nf-core/methylseq v1.6.1
Run Name: festering_kirch
nf-core/methylseq execution completed successfully!
The workflow was completed at 2021-09-15T04:38:13.558790+03:00 (duration: 4h 16m 44s)
The command used to launch the workflow was as follows:
nextflow run nf-core/methylseq -profile cfdna
Pipeline Configuration:
| Pipeline Release | master |
|---|---|
| Run Name | festering_kirch |
| Input | null |
| Aligner | bismark |
| Data Type | Paired-End |
| Bismark Index | results/reference_genome/BismarkIndex/ |
| Fasta Ref | /home/agalicina/GENOMES/HG38_FASTA/hg38.fa |
| Fasta Index | /home/agalicina/GENOMES/HG38_FASTA/hg38.fa.fai |
| Trimming | 5'R1: 0 / 5'R2: 0 / 3'R1: 0 / 3'R2: 0 |
| Deduplication | No |
| Directional Mode | Yes |
| All C Contexts | Yes |
| Cytosine report | Yes |
| Save Intermediates | Reference genome build |
| Output dir | ./results |
| Launch dir | /mnt/lustre/agalicina/tmp/DimaTO/methylseq |
| Working dir | /mnt/lustre/agalicina/tmp/DimaTO/methylseq/work |
| Pipeline dir | /home/agalicina/.nextflow/assets/nf-core/methylseq |
| User | agalicina |
| Config Profile | cfdna |
| Max Resources | 30 GB memory, 20 cpus, 5h time per job |
| Config Files | /home/agalicina/.nextflow/assets/nf-core/methylseq/nextflow.config, /mnt/lustre/agalicina/tmp/DimaTO/methylseq/nextflow.config |
| Date Started | 2021-09-15T00:21:29.697823+03:00 |
| Date Completed | 2021-09-15T04:38:13.558790+03:00 |
| Pipeline script file path | /home/agalicina/.nextflow/assets/nf-core/methylseq/main.nf |
| Pipeline script hash ID | 18179884b6320ca99aa10bcca5ebb512 |
| Pipeline repository Git URL | https://github.com/nf-core/methylseq |
| Pipeline repository Git Commit | 03972a686bedeb2920803cd575f4d671e9135af0 |
| Pipeline Git branch/tag | master |
| Nextflow Version | 21.04.0 |
| Nextflow Build | 5552 |
| Nextflow Compile Timestamp | 02-05-2021 16:22 UTC |
nf-core/methylseq