FastQCFastQC Report
Wed 15 Sep 2021
3_S3_L001_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename3_S3_L001_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90182
Sequences flagged as poor quality0
Sequence length150
%GC28

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGGTAGTGAATATTTTTGTTGTTATGGTAATGATATTATGTTATGGGAG7112078.86274422833824No Hit
TTGGTAGTGAATATTTTTGTTGTTACGGTAATGATATTATGTTATGGGAG42854.751502517132022No Hit
TTGGTAGTGAATATTTTTGTTGTTACGGTAACGATATTATGTTATGGGAG38604.2802333059812385No Hit
TTGGTAGTGAATATTTTTGTTGTTATGGTAACGATATTATGTTATGGGAG19262.135681178062141No Hit
TTGGTAGTGAATATTTTTGTTGTTATGAAATGGATGGTTAGGGAGTTGTA8200.9092723603379833No Hit
TTGGTAGTGAATATTTTTGTTGTTATGGTAATGATATTATGTCATGGGAG5570.6176398837905568No Hit
TTGGTAGTGAATATTAGTATTGATATGAAATGGATGGTTAGGGAGTTGTA5090.5644141846488213No Hit
TTGGTAGTGAATATTTTTGTTGTTATGGTGATGATATTATGTTATGGGAG4940.5477811536670288No Hit
TTGGTAGTGAATATTTTTGTTGTTATGGTAATGATATTATGTTGTGGGAG3320.36814441906367124No Hit
TTGGTAGTGAATATTTTTGTTGTTATGGTAATGGTATTATGTTATGGGAG2270.25171320219112464No Hit
TTGGTAGTGAATATTTTGTTGTTATGGTAATGATATTATGTTATGGGAGG2040.2262092213523763No Hit
TTGGTAGTGAATATTTTTGTTGTTATGGTAGTGATATTATGTTATGGGAG1720.19072542192455258No Hit
TTGGTAGTGAATATTTTTGTGTTATGGTAATGATATTATGTTATGGGAGG1550.1718746534785212No Hit
TTGGTAGTGAATATTTTTGTTGTTATGGTAATGATATTATGTTATGGGGG1310.1452618039076534No Hit
TTGGTAGTGAATATTTTTGTTGTTATGGTAATGATGTTATGTTATGGGAG990.10977800447982969No Hit
TTGGTAGTGAATATTTTTGTTGTTATGGTAATGATATTATGCTATGGGAG910.10090705462287375No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)