Alignment Stats
| Sequences analysed in total |
79877 |
| Single-end alignments with a unique best hit |
39627 |
| Sequences without alignments under any condition |
40250 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
361611 |
| Methylated C's in CpG context |
907 |
| Methylated C's in CHG context |
939 |
| Methylated C's in CHH context |
836 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
100352 |
| Unmethylated C's in CHG context |
142664 |
| Unmethylated C's in CHH context |
115913 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
0.9% |
| Percentage methylation (CHG context) |
0.7% |
| Percentage methylation (CHH context) |
0.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
39616 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
11 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
39627 |
| Unique alignments |
311 |
| Duplicates removed |
39316 |
| Duplicated alignments were found at 298 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2923 |
| Methylated C's in CpG context |
42 |
| Methylated C's in CHG context |
36 |
| Methylated C's in CHH context |
49 |
| Unmethylated C's in CpG context |
864 |
| Unmethylated C's in CHG context |
998 |
| Unmethylated C's in CHH context |
934 |
| Percentage methylation (CpG context) |
4.6% |
| Percentage methylation (CHG context) |
3.5% |
| Percentage methylation (CHH context) |
5.0% |
|
|
M-Bias Plot
