Alignment Stats
| Sequences analysed in total |
119828 |
| Single-end alignments with a unique best hit |
59741 |
| Sequences without alignments under any condition |
60087 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
543990 |
| Methylated C's in CpG context |
1406 |
| Methylated C's in CHG context |
1376 |
| Methylated C's in CHH context |
1352 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
151362 |
| Unmethylated C's in CHG context |
214886 |
| Unmethylated C's in CHH context |
173608 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
0.9% |
| Percentage methylation (CHG context) |
0.6% |
| Percentage methylation (CHH context) |
0.8% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
59713 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
28 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
59741 |
| Unique alignments |
323 |
| Duplicates removed |
59418 |
| Duplicated alignments were found at 304 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
3028 |
| Methylated C's in CpG context |
77 |
| Methylated C's in CHG context |
55 |
| Methylated C's in CHH context |
101 |
| Unmethylated C's in CpG context |
865 |
| Unmethylated C's in CHG context |
996 |
| Unmethylated C's in CHH context |
934 |
| Percentage methylation (CpG context) |
8.2% |
| Percentage methylation (CHG context) |
5.2% |
| Percentage methylation (CHH context) |
9.8% |
|
|
M-Bias Plot
