Alignment Stats
| Sequences analysed in total |
99829 |
| Single-end alignments with a unique best hit |
49589 |
| Sequences without alignments under any condition |
50240 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
451198 |
| Methylated C's in CpG context |
1173 |
| Methylated C's in CHG context |
1178 |
| Methylated C's in CHH context |
1010 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
125416 |
| Unmethylated C's in CHG context |
178381 |
| Unmethylated C's in CHH context |
144040 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
0.9% |
| Percentage methylation (CHG context) |
0.7% |
| Percentage methylation (CHH context) |
0.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
49575 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
14 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
49589 |
| Unique alignments |
310 |
| Duplicates removed |
49279 |
| Duplicated alignments were found at 300 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2899 |
| Methylated C's in CpG context |
48 |
| Methylated C's in CHG context |
29 |
| Methylated C's in CHH context |
48 |
| Unmethylated C's in CpG context |
853 |
| Unmethylated C's in CHG context |
996 |
| Unmethylated C's in CHH context |
925 |
| Percentage methylation (CpG context) |
5.3% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
4.9% |
|
|
M-Bias Plot
