[2021-09-15 04:37:21,042] multiqc [DEBUG ] This is MultiQC v1.11
[2021-09-15 04:37:21,043] multiqc [DEBUG ] No MultiQC config found: /mnt/lustre/agalicina/anaconda3/envs/nf-core/lib/python3.7/site-packages/multiqc_config.yaml
[2021-09-15 04:37:21,044] multiqc [DEBUG ] No MultiQC config found: /home/agalicina/.multiqc_config.yaml
[2021-09-15 04:37:21,051] multiqc [DEBUG ] Loading config settings from: multiqc_config.yaml
[2021-09-15 04:37:21,051] multiqc [DEBUG ] New config 'report_comment': This report has been generated by the nf-core/methylseq analysis pipeline. For information about how to interpret these results, please see the documentation.
[2021-09-15 04:37:21,051] multiqc [DEBUG ] New config 'report_section_order': {'software_versions': {'order': -1000}, 'nf-core-methylseq-summary': {'order': -1001}}
[2021-09-15 04:37:21,051] multiqc [DEBUG ] New config 'export_plots': True
[2021-09-15 04:37:21,052] multiqc [DEBUG ] New config 'table_columns_visible': {'QualiMap': {'avg_gc': False, '30_x_pc': False, 'percentage_aligned': False}}
[2021-09-15 04:37:21,052] multiqc [DEBUG ] New config 'top_modules': ['bismark']
[2021-09-15 04:37:21,052] multiqc [DEBUG ] Command used: /home/agalicina/anaconda3/envs/nf-core/bin/multiqc -f . -m custom_content -m picard -m qualimap -m bismark -m samtools -m preseq -m cutadapt -m fastqc
[2021-09-15 04:37:21,851] multiqc [DEBUG ] Latest MultiQC version is v1.11
[2021-09-15 04:37:21,852] multiqc [DEBUG ] Command : /home/agalicina/anaconda3/envs/nf-core/bin/multiqc -f . -m custom_content -m picard -m qualimap -m bismark -m samtools -m preseq -m cutadapt -m fastqc
[2021-09-15 04:37:21,852] multiqc [DEBUG ] Working dir : /mnt/lustre/agalicina/tmp/DimaTO/methylseq/work/b4/e6daf53197d8f4234bd6788d66c108
[2021-09-15 04:37:21,852] multiqc [DEBUG ] Template : default
[2021-09-15 04:37:21,852] multiqc [DEBUG ] Running Python 3.7.6 (default, Jan 8 2020, 19:59:22) [GCC 7.3.0]
[2021-09-15 04:37:21,853] multiqc [INFO ] Only using modules: custom_content, picard, qualimap, bismark, samtools, preseq, cutadapt, fastqc
[2021-09-15 04:37:21,853] multiqc [DEBUG ] Analysing modules: bismark, custom_content, qualimap, preseq, picard, samtools, cutadapt, fastqc
[2021-09-15 04:37:21,890] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpqs0jl6zb
[2021-09-15 04:37:22,954] multiqc [INFO ] Search path : /mnt/lustre/agalicina/tmp/DimaTO/methylseq/work/b4/e6daf53197d8f4234bd6788d66c108
[2021-09-15 04:37:22,956] multiqc [DEBUG ] Ignored 230 search patterns as didn't match running modules.
[2021-09-15 04:37:37,840] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3
[2021-09-15 04:37:37,865] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3
[2021-09-15 04:37:38,471] multiqc.modules.bismark.bismark [INFO ] Found 4 alignment reports
[2021-09-15 04:37:42,098] multiqc.modules.bismark.bismark [INFO ] Found 4 methextract reports
[2021-09-15 04:37:49,181] multiqc.modules.custom_content.custom_content [INFO ] nf-core-methylseq-summary: Found 1 sample (html)
[2021-09-15 04:37:49,182] multiqc.modules.custom_content.custom_content [INFO ] software_versions: Found 1 sample (html)
[2021-09-15 04:37:49,500] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50
[2021-09-15 04:37:53,790] multiqc.modules.qualimap.qualimap [INFO ] Found 4 BamQC reports
[2021-09-15 04:37:53,841] multiqc [DEBUG ] No samples found: preseq
[2021-09-15 04:37:54,222] multiqc [DEBUG ] No samples found: picard
[2021-09-15 04:37:54,388] multiqc [DEBUG ] No samples found: samtools
[2021-09-15 04:37:54,497] multiqc.modules.cutadapt.cutadapt [INFO ] Found 8 reports
[2021-09-15 04:37:59,033] multiqc.modules.fastqc.fastqc [INFO ] Found 8 reports
[2021-09-15 04:38:10,734] multiqc [DEBUG ] Reordering sections: anchor 'software_versions' not found for module 'Bismark'.
[2021-09-15 04:38:10,734] multiqc [DEBUG ] Reordering sections: anchor 'nf-core-methylseq-summary' not found for module 'Bismark'.
[2021-09-15 04:38:10,734] multiqc [DEBUG ] Reordering sections: anchor 'software_versions' not found for module 'QualiMap'.
[2021-09-15 04:38:10,734] multiqc [DEBUG ] Reordering sections: anchor 'nf-core-methylseq-summary' not found for module 'QualiMap'.
[2021-09-15 04:38:10,735] multiqc [DEBUG ] Reordering sections: anchor 'software_versions' not found for module 'Cutadapt'.
[2021-09-15 04:38:10,735] multiqc [DEBUG ] Reordering sections: anchor 'nf-core-methylseq-summary' not found for module 'Cutadapt'.
[2021-09-15 04:38:10,735] multiqc [DEBUG ] Reordering sections: anchor 'software_versions' not found for module 'FastQC'.
[2021-09-15 04:38:10,735] multiqc [DEBUG ] Reordering sections: anchor 'nf-core-methylseq-summary' not found for module 'FastQC'.
[2021-09-15 04:38:10,735] multiqc [DEBUG ] Reordering sections: anchor 'software_versions' not found for module 'nf-core/methylseq Software Versions'.
[2021-09-15 04:38:10,735] multiqc [DEBUG ] Reordering sections: anchor 'nf-core-methylseq-summary' not found for module 'nf-core/methylseq Software Versions'.
[2021-09-15 04:38:10,735] multiqc [DEBUG ] Reordering sections: anchor 'software_versions' not found for module 'nf-core/methylseq Workflow Summary'.
[2021-09-15 04:38:10,735] multiqc [DEBUG ] Reordering sections: anchor 'nf-core-methylseq-summary' not found for module 'nf-core/methylseq Workflow Summary'.
[2021-09-15 04:38:10,783] multiqc [INFO ] Compressing plot data
[2021-09-15 04:38:11,051] multiqc [INFO ] Report : multiqc_report.html
[2021-09-15 04:38:11,051] multiqc [INFO ] Data : multiqc_data
[2021-09-15 04:38:11,052] multiqc [DEBUG ] Moving data file from '/tmp/tmpqs0jl6zb/multiqc_data' to '/mnt/lustre/agalicina/tmp/DimaTO/methylseq/work/b4/e6daf53197d8f4234bd6788d66c108/multiqc_data'
[2021-09-15 04:38:11,214] multiqc [INFO ] Plots : multiqc_plots
[2021-09-15 04:38:11,215] multiqc [DEBUG ] Moving plots directory from '/tmp/tmpqs0jl6zb/multiqc_plots' to '/mnt/lustre/agalicina/tmp/DimaTO/methylseq/work/b4/e6daf53197d8f4234bd6788d66c108/multiqc_plots'
[2021-09-15 04:38:12,865] multiqc [INFO ] MultiQC complete