/*
 * -------------------------------------------------
 *  Nextflow config file for running tests
 * -------------------------------------------------
 * Defines bundled input files and everything required
 * to run a fast and simple test. Use as follows:
 *   nextflow run nf-core/methylseq -profile test_paired,<conda/docker/singularity>
 */

params {
  config_profile_name = 'Test profile'
  config_profile_description = 'Minimal test dataset to check pipeline function'
  // Limit resources so that this can run on GitHub Actions
  max_cpus = 2
  max_memory = 6.GB
  max_time = 48.h

  // Input data
  single_end = false
  input_paths = [
    [
      'Ecoli_10K_methylated',
      [
        'https://github.com/nf-core/test-datasets/raw/methylseq/testdata/Ecoli_10K_methylated_R1.fastq.gz',
        'https://github.com/nf-core/test-datasets/raw/methylseq/testdata/Ecoli_10K_methylated_R2.fastq.gz'
      ]
    ]
  ]
  // Genome references
  fasta = 'https://github.com/nf-core/test-datasets/raw/methylseq/reference/genome.fa'
  fasta_index = 'https://github.com/nf-core/test-datasets/raw/methylseq/reference/genome.fa.fai'
  // Ignore `--input` as otherwise the parameter validation will throw an error
  schema_ignore_params = 'genomes,input_paths,input'
}