[2020-03-18 04:17:13,601] multiqc                                            [DEBUG  ]  No MultiQC config found: /home/agalicina/anaconda3/envs/chipseq-nf-core/lib/python2.7/site-packages/multiqc_config.yaml
[2020-03-18 04:17:13,601] multiqc                                            [DEBUG  ]  No MultiQC config found: /home/agalicina/.multiqc_config.yaml
[2020-03-18 04:17:13,628] multiqc                                            [DEBUG  ]  Loading config settings from: multiqc_config.yaml
[2020-03-18 04:17:13,628] multiqc                                            [DEBUG  ]  New config 'module_order': [{'fastqc': {'info': 'This section of the report shows FastQC results before adapter trimming.', 'name': 'FastQC (library; raw)', 'path_filters_exclude': ['*val*_fastqc.zip', '*trimmed_fastqc.zip'], 'path_filters': ['*_fastqc.zip']}}, {'cutadapt': {'info': 'This section of the report shows the length of trimmed reads by cutadapt.', 'name': 'cutadapt (library; trimmed)', 'path_filters': ['*_trimming_report.txt']}}, {'fastqc': {'info': 'This section of the report shows FastQC results after adapter trimming.', 'name': 'FastQC (library; trimmed)', 'path_filters': ['*val*_fastqc.zip', '*trimmed_fastqc.zip']}}, {'samtools': {'info': 'This section of the report shows SAMTools results for individual libraries.', 'name': 'SAMTools (library)', 'path_filters': ['*.Lb.sorted.bam*']}}, {'samtools': {'info': 'This section of the report shows SAMTools results after merging libraries and before filtering.', 'name': 'SAMTools (merged library; unfiltered)', 'path_filters': ['*mLb.mkD.sorted.bam*']}}, {'preseq': {'info': 'This section of the report shows Preseq results after merging libraries and before filtering.', 'name': 'Preseq (merged library; unfiltered)', 'path_filters': ['*mLb*']}}, {'samtools': {'info': 'This section of the report shows SAMTools results after merging libraries and after filtering.', 'name': 'SAMTools (merged library; filtered)', 'path_filters': ['*mLb.clN.sorted.bam*']}}, {'picard': {'info': 'This section of the report shows picard results after merging libraries and after filtering.', 'name': 'Picard (merged library; filtered)', 'path_filters': ['*mLb*']}}, {'deeptools': {'info': 'This section of the report shows ChIP-seq QC plots generated by deepTools.', 'name': 'deepTools', 'path_filters': ['*.plot*']}}, {'featureCounts': {'info': 'This section of the report shows featureCounts results for the number of reads assigned to merged library consensus peaks.', 'name': 'featureCounts', 'path_filters': ['*featureCounts*']}}]
[2020-03-18 04:17:13,628] multiqc                                            [DEBUG  ]  New config 'custom_plot_config': {'featurecounts': {'cpswitch_c_active': False}, 'picard-insertsize': {'cpswitch_c_active': False, 'smooth_points': 1000}}
[2020-03-18 04:17:13,628] multiqc                                            [DEBUG  ]  New config 'report_comment': This report has been generated by the <a href="https://github.com/nf-core/chipseq" target="_blank">nf-core/chipseq</a> analysis pipeline. For information about how to interpret these results, please see the <a href="https://github.com/nf-core/chipseq/blob/master/docs/output.md" target="_blank">documentation</a>.

[2020-03-18 04:17:13,629] multiqc                                            [DEBUG  ]  New config 'export_plots': True
[2020-03-18 04:17:13,629] multiqc                                            [DEBUG  ]  New config 'fn_clean_exts': ['fastq.gz', '_trimmed', '_val', 'sorted.bam', '.Lb', 'mkD', 'clN', 'mLb', '_peaks', '_spp', '.spp']
[2020-03-18 04:17:13,629] multiqc                                            [DEBUG  ]  New config 'report_section_order': {'software_versions': {'order': -3600}, 'rsc_coefficient': {'order': -1400}, 'deseq2_pca_8': {'order': -2300}, 'deseq2_pca_4': {'order': -1900}, 'deseq2_pca_5': {'order': -2000}, 'deseq2_pca_6': {'order': -2100}, 'deseq2_clustering_10': {'order': -3500}, 'peak_annotation': {'order': -1500}, 'deseq2_pca_1': {'order': -1600}, 'deseq2_pca_2': {'order': -1700}, 'deseq2_pca_3': {'order': -1800}, 'frip_score': {'order': -1100}, 'strand_shift_correlation': {'order': -1200}, 'deseq2_pca_9': {'order': -2400}, 'nf-core-chipseq-summary': {'order': -3700}, 'peak_count': {'order': -1000}, 'deseq2_clustering_9': {'order': -3400}, 'deseq2_clustering_8': {'order': -3300}, 'deseq2_clustering_7': {'order': -3200}, 'nsc_coefficient': {'order': -1300}, 'deseq2_clustering_5': {'order': -3000}, 'deseq2_clustering_4': {'order': -2900}, 'deseq2_clustering_3': {'order': -2800}, 'deseq2_clustering_2': {'order': -2700}, 'deseq2_clustering_1': {'order': -2600}, 'deseq2_pca_7': {'order': -2200}, 'deseq2_pca_10': {'order': -2500}, 'deseq2_clustering_6': {'order': -3100}}
[2020-03-18 04:17:13,644] multiqc                                            [DEBUG  ]  Loading config settings from: multiqc_config.yaml
[2020-03-18 04:17:13,644] multiqc                                            [DEBUG  ]  New config 'module_order': [{'fastqc': {'info': 'This section of the report shows FastQC results before adapter trimming.', 'name': 'FastQC (library; raw)', 'path_filters_exclude': ['*val*_fastqc.zip', '*trimmed_fastqc.zip'], 'path_filters': ['*_fastqc.zip']}}, {'cutadapt': {'info': 'This section of the report shows the length of trimmed reads by cutadapt.', 'name': 'cutadapt (library; trimmed)', 'path_filters': ['*_trimming_report.txt']}}, {'fastqc': {'info': 'This section of the report shows FastQC results after adapter trimming.', 'name': 'FastQC (library; trimmed)', 'path_filters': ['*val*_fastqc.zip', '*trimmed_fastqc.zip']}}, {'samtools': {'info': 'This section of the report shows SAMTools results for individual libraries.', 'name': 'SAMTools (library)', 'path_filters': ['*.Lb.sorted.bam*']}}, {'samtools': {'info': 'This section of the report shows SAMTools results after merging libraries and before filtering.', 'name': 'SAMTools (merged library; unfiltered)', 'path_filters': ['*mLb.mkD.sorted.bam*']}}, {'preseq': {'info': 'This section of the report shows Preseq results after merging libraries and before filtering.', 'name': 'Preseq (merged library; unfiltered)', 'path_filters': ['*mLb*']}}, {'samtools': {'info': 'This section of the report shows SAMTools results after merging libraries and after filtering.', 'name': 'SAMTools (merged library; filtered)', 'path_filters': ['*mLb.clN.sorted.bam*']}}, {'picard': {'info': 'This section of the report shows picard results after merging libraries and after filtering.', 'name': 'Picard (merged library; filtered)', 'path_filters': ['*mLb*']}}, {'deeptools': {'info': 'This section of the report shows ChIP-seq QC plots generated by deepTools.', 'name': 'deepTools', 'path_filters': ['*.plot*']}}, {'featureCounts': {'info': 'This section of the report shows featureCounts results for the number of reads assigned to merged library consensus peaks.', 'name': 'featureCounts', 'path_filters': ['*featureCounts*']}}]
[2020-03-18 04:17:13,644] multiqc                                            [DEBUG  ]  New config 'custom_plot_config': {'featurecounts': {'cpswitch_c_active': False}, 'picard-insertsize': {'cpswitch_c_active': False, 'smooth_points': 1000}}
[2020-03-18 04:17:13,644] multiqc                                            [DEBUG  ]  New config 'report_comment': This report has been generated by the <a href="https://github.com/nf-core/chipseq" target="_blank">nf-core/chipseq</a> analysis pipeline. For information about how to interpret these results, please see the <a href="https://github.com/nf-core/chipseq/blob/master/docs/output.md" target="_blank">documentation</a>.

[2020-03-18 04:17:13,644] multiqc                                            [DEBUG  ]  New config 'export_plots': True
[2020-03-18 04:17:13,644] multiqc                                            [DEBUG  ]  New config 'fn_clean_exts': ['fastq.gz', '_trimmed', '_val', 'sorted.bam', '.Lb', 'mkD', 'clN', 'mLb', '_peaks', '_spp', '.spp']
[2020-03-18 04:17:13,645] multiqc                                            [DEBUG  ]  New config 'report_section_order': {'software_versions': {'order': -3600}, 'rsc_coefficient': {'order': -1400}, 'deseq2_pca_8': {'order': -2300}, 'deseq2_pca_4': {'order': -1900}, 'deseq2_pca_5': {'order': -2000}, 'deseq2_pca_6': {'order': -2100}, 'deseq2_clustering_10': {'order': -3500}, 'peak_annotation': {'order': -1500}, 'deseq2_pca_1': {'order': -1600}, 'deseq2_pca_2': {'order': -1700}, 'deseq2_pca_3': {'order': -1800}, 'frip_score': {'order': -1100}, 'strand_shift_correlation': {'order': -1200}, 'deseq2_pca_9': {'order': -2400}, 'nf-core-chipseq-summary': {'order': -3700}, 'peak_count': {'order': -1000}, 'deseq2_clustering_9': {'order': -3400}, 'deseq2_clustering_8': {'order': -3300}, 'deseq2_clustering_7': {'order': -3200}, 'nsc_coefficient': {'order': -1300}, 'deseq2_clustering_5': {'order': -3000}, 'deseq2_clustering_4': {'order': -2900}, 'deseq2_clustering_3': {'order': -2800}, 'deseq2_clustering_2': {'order': -2700}, 'deseq2_clustering_1': {'order': -2600}, 'deseq2_pca_7': {'order': -2200}, 'deseq2_pca_10': {'order': -2500}, 'deseq2_clustering_6': {'order': -3100}}
[2020-03-18 04:17:13,645] multiqc                                            [DEBUG  ]  Command used: /home/agalicina/anaconda3/envs/chipseq-nf-core/bin/multiqc . -f --config multiqc_config.yaml -m custom_content -m fastqc -m cutadapt -m samtools -m picard -m preseq -m featureCounts -m deeptools -m phantompeakqualtools
[2020-03-18 04:17:14,243] multiqc                                            [WARNING]  MultiQC Version v1.8 now available!
[2020-03-18 04:17:14,244] multiqc                                            [INFO   ]  This is MultiQC v1.7
[2020-03-18 04:17:14,244] multiqc                                            [DEBUG  ]  Command     : /home/agalicina/anaconda3/envs/chipseq-nf-core/bin/multiqc . -f --config multiqc_config.yaml -m custom_content -m fastqc -m cutadapt -m samtools -m picard -m preseq -m featureCounts -m deeptools -m phantompeakqualtools
[2020-03-18 04:17:14,244] multiqc                                            [DEBUG  ]  Working dir : /home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755
[2020-03-18 04:17:14,244] multiqc                                            [INFO   ]  Template    : default
[2020-03-18 04:17:14,244] multiqc                                            [INFO   ]  Searching '.'
[2020-03-18 04:17:14,246] multiqc                                            [INFO   ]  Only using modules custom_content, fastqc, cutadapt, samtools, picard, preseq, featureCounts, deeptools, phantompeakqualtools
[2020-03-18 04:17:14,246] multiqc                                            [DEBUG  ]  Analysing modules: phantompeakqualtools, custom_content, fastqc, cutadapt, fastqc, samtools, samtools, preseq, samtools, picard, deeptools, featureCounts
[2020-03-18 04:17:14,248] multiqc                                            [DEBUG  ]  Using temporary directory for creating report: /tmp/tmpwfeXtk
[2020-03-18 04:17:14,598] multiqc                                            [DEBUG  ]  Ignored search patterns as didn't match running modules: rna_seqc/correlation, biscuit/qc_cpg_cv, hicpro/mergestat, bbmap/statsfile_machine, bbmap/bhist, bamtools/stats, rseqc/gene_body_coverage, supernova/kmers, biscuit/covdist_cpg_q40_topgc, kallisto, bbmap/qhist, bbmap/aqhist, biscuit/retention_rate_byread, homer/GCcontent, biscuit/covdist, quast, bbmap/bqhist, bismark/m_bias, bowtie2, conpair/concordance, qualimap/bamqc/genome_fraction, biscuit/align_mapq, goleft_indexcov/roc, longranger/invocation, rseqc/read_duplication_pos, flexbar, biscuit/dup_report, gatk/varianteval, mirtrace/summary, supernova/molecules, fastq_screen, rseqc/read_distribution, prokka, homer/tagInfo, hicup, bbmap/lhist, rna_seqc/metrics, bbmap/statsfile, biscuit/qc_cpg_dist, biscuit/covdist_cpg_q40, skewer, biscuit/markdup_report, hicpro/mRSstat, mirtrace/mirnacomplexity, damageprofiler, gatk/base_recalibrator, longranger/summary, bbmap/gchist, bcftools/stats, rseqc/inner_distance, flash/hist, bismark/meth_extract, dedup, bismark/dedup, homer/LengthDistribution, mirtrace/contaminationbasic, biscuit/align_isize, minionqc, qualimap/bamqc/insert_size, slamdunk/tcperreadpos, biscuit/retention_dist_byread, goleft_indexcov/ped, biscuit/covdist_cpg, snpeff, bbmap/mhist, hicpro/mpairstat, verifybamid/selfsm, bbmap/covstats, methylQA, qualimap/bamqc/coverage, peddy/summary_table, star/genecounts, flash/log, biscuit/covdist_q40, peddy/background_pca, homer/genomeGCcontent, bcl2fastq, bbmap/bincov, qualimap/bamqc/gc_dist, conpair/contamination, homer/findpeaks, stacks/gstacks, afterqc, rseqc/bam_stat, theta2, bbmap/idhist, hicexplorer, supernova/report, bbmap/covhist, biscuit/covdist_cpg_q40_botgc, biscuit/retention_cpg_readpos, clipandmerge, slamdunk/summary, slamdunk/utrrates, peddy/sex_check, sargasso, slamdunk/PCA, stacks/populations, rna_seqc/coverage, bbmap/qahist, biscuit/align_strand, happy, qorts, bismark/align, homer/RestrictionDistribution, rsem, biscuit/retention_cph_readpos, interop/index-summary, rseqc/junction_saturation, interop/summary, supernova/summary, bbmap/stats, clusterflow/logs, biobloomtools, peddy/het_check, bbmap/ehist, biscuit/retention_dist, biscuit/covdist_q40_botgc, homer/FreqDistribution, macs2, samblaster, vcftools/tstv_by_qual, biscuit/retention_rate_bybase, bbmap/indelhist, vcftools/tstv_by_count, fastp, hicpro/mmapstat, salmon/meta, vcftools/relatedness2, bismark/bam2nuc, vcftools/tstv_summary, busco, bbmap/ihist, tophat, clusterflow/runfiles, hisat2, rseqc/infer_experiment, biscuit/qc_cv, slamdunk/rates, rseqc/junction_annotation, qualimap/rnaseq/rnaseq_results, slamdunk/tcperutrpos, biscuit/covdist_q40_topgc, sortmerna, disambiguate, star, adapterRemoval, rseqc/read_gc, qualimap/bamqc/genome_results, hicpro/assplit, htseq, kat, bowtie1, trimmomatic, jellyfish, bbmap/rpkm, peddy/ped_check, leehom, mirtrace/length, salmon/fld, qualimap/rnaseq/coverage, stacks/sumstats
[2020-03-18 04:17:14,807] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_INPUT_R1_T1_1_val_1_fastqc.html
[2020-03-18 04:17:14,807] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_T15_R2_T1_2_val_2_fastqc.html
[2020-03-18 04:17:14,808] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_T15_R1_T1_1_val_1_fastqc.html
[2020-03-18 04:17:14,808] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_T0_R1_T1_1_val_1_fastqc.html
[2020-03-18 04:17:14,808] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_T15_R2_T1_1_val_1_fastqc.html
[2020-03-18 04:17:14,808] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_T0_R2_T1_2_val_2_fastqc.html
[2020-03-18 04:17:14,808] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_T0_R2_T1_1_val_1_fastqc.html
[2020-03-18 04:17:14,808] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_INPUT_R2_T1_2_val_2_fastqc.html
[2020-03-18 04:17:14,809] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_T0_R1_T1_2_val_2_fastqc.html
[2020-03-18 04:17:14,809] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_INPUT_R2_T1_1_val_1_fastqc.html
[2020-03-18 04:17:14,809] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_INPUT_R1_T1_2_val_2_fastqc.html
[2020-03-18 04:17:14,809] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_T15_R1_T1_2_val_2_fastqc.html
[2020-03-18 04:17:15,854] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_T15_R2_T1_2_fastqc.html
[2020-03-18 04:17:15,855] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_T0_R2_T1_1_fastqc.html
[2020-03-18 04:17:15,855] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_T0_R2_T1_2_fastqc.html
[2020-03-18 04:17:15,855] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_T15_R1_T1_1_fastqc.html
[2020-03-18 04:17:15,855] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_INPUT_R1_T1_1_fastqc.html
[2020-03-18 04:17:15,855] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_INPUT_R2_T1_2_fastqc.html
[2020-03-18 04:17:15,855] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_T15_R1_T1_2_fastqc.html
[2020-03-18 04:17:15,856] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_T0_R1_T1_1_fastqc.html
[2020-03-18 04:17:15,856] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_INPUT_R2_T1_1_fastqc.html
[2020-03-18 04:17:15,856] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_T0_R1_T1_2_fastqc.html
[2020-03-18 04:17:15,856] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_INPUT_R1_T1_2_fastqc.html
[2020-03-18 04:17:15,856] multiqc                                            [DEBUG  ]  Ignoring file as matched an ignore pattern: SPT5_T15_R2_T1_1_fastqc.html
[2020-03-18 04:17:15,920] multiqc.modules.phantompeakqualtools.phantompeakqualtools [INFO   ]  Found 6 logs
[2020-03-18 04:17:16,243] multiqc.modules.custom_content.custom_content      [INFO   ]  nf-core-chipseq-summary: Found 1 sample (html)
[2020-03-18 04:17:16,243] multiqc.modules.custom_content.custom_content      [INFO   ]  nf-core-chipseq-summary: Found 1775 samples (html)
[2020-03-18 04:17:16,243] multiqc.modules.custom_content.custom_content      [INFO   ]  software_versions: Found 1 sample (html)
[2020-03-18 04:17:16,243] multiqc.modules.custom_content.custom_content      [INFO   ]  software_versions: Found 835 samples (html)
[2020-03-18 04:17:17,303] multiqc.modules.custom_content.custom_content      [INFO   ]  peak_count: Found 4 samples (bargraph)
[2020-03-18 04:17:18,504] multiqc.modules.custom_content.custom_content      [INFO   ]  rsc_coefficient: Found 6 samples (bargraph)
[2020-03-18 04:17:19,681] multiqc.modules.custom_content.custom_content      [INFO   ]  nsc_coefficient: Found 6 samples (bargraph)
[2020-03-18 04:17:19,681] multiqc.modules.custom_content.custom_content      [INFO   ]  deseq2_clustering_1: Found 4 samples (heatmap)
[2020-03-18 04:17:20,604] multiqc.modules.custom_content.custom_content      [INFO   ]  peak_annotation: Found 4 samples (bargraph)
[2020-03-18 04:17:20,604] multiqc.modules.custom_content.custom_content      [INFO   ]  deseq2_pca_1: Found 4 samples (scatter)
[2020-03-18 04:17:21,522] multiqc.modules.custom_content.custom_content      [INFO   ]  frip_score: Found 4 samples (bargraph)
[2020-03-18 04:17:22,226] multiqc.modules.custom_content.custom_content      [INFO   ]  strand_shift_correlation: Found 6 samples (linegraph)
[2020-03-18 04:17:22,234] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_T15_R1_T1_2_val_2_fastqc.zip' as it matched the path_filters_exclude for 'FastQC (library; raw)'
[2020-03-18 04:17:22,234] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_T0_R2_T1_1_val_1_fastqc.zip' as it matched the path_filters_exclude for 'FastQC (library; raw)'
[2020-03-18 04:17:22,234] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_T0_R2_T1_2_val_2_fastqc.zip' as it matched the path_filters_exclude for 'FastQC (library; raw)'
[2020-03-18 04:17:22,234] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_T0_R1_T1_2_val_2_fastqc.zip' as it matched the path_filters_exclude for 'FastQC (library; raw)'
[2020-03-18 04:17:22,234] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_T0_R1_T1_1_val_1_fastqc.zip' as it matched the path_filters_exclude for 'FastQC (library; raw)'
[2020-03-18 04:17:22,234] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_T15_R1_T1_1_val_1_fastqc.zip' as it matched the path_filters_exclude for 'FastQC (library; raw)'
[2020-03-18 04:17:22,234] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_T15_R2_T1_1_val_1_fastqc.zip' as it matched the path_filters_exclude for 'FastQC (library; raw)'
[2020-03-18 04:17:22,234] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_INPUT_R1_T1_2_val_2_fastqc.zip' as it matched the path_filters_exclude for 'FastQC (library; raw)'
[2020-03-18 04:17:22,234] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_INPUT_R2_T1_2_val_2_fastqc.zip' as it matched the path_filters_exclude for 'FastQC (library; raw)'
[2020-03-18 04:17:22,234] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_INPUT_R2_T1_1_val_1_fastqc.zip' as it matched the path_filters_exclude for 'FastQC (library; raw)'
[2020-03-18 04:17:22,234] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_INPUT_R1_T1_1_val_1_fastqc.zip' as it matched the path_filters_exclude for 'FastQC (library; raw)'
[2020-03-18 04:17:22,234] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_T15_R2_T1_2_val_2_fastqc.zip' as it matched the path_filters_exclude for 'FastQC (library; raw)'
[2020-03-18 04:17:22,235] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_T0_R2_T1_1_fastqc.zip' as it matched the path_filters for 'FastQC (library; raw)'
[2020-03-18 04:17:22,334] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_T0_R1_T1_2_fastqc.zip' as it matched the path_filters for 'FastQC (library; raw)'
[2020-03-18 04:17:22,457] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_INPUT_R2_T1_1_fastqc.zip' as it matched the path_filters for 'FastQC (library; raw)'
[2020-03-18 04:17:22,489] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_INPUT_R1_T1_2_fastqc.zip' as it matched the path_filters for 'FastQC (library; raw)'
[2020-03-18 04:17:22,534] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_T15_R1_T1_2_fastqc.zip' as it matched the path_filters for 'FastQC (library; raw)'
[2020-03-18 04:17:22,623] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_T15_R1_T1_1_fastqc.zip' as it matched the path_filters for 'FastQC (library; raw)'
[2020-03-18 04:17:22,728] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_T0_R1_T1_1_fastqc.zip' as it matched the path_filters for 'FastQC (library; raw)'
[2020-03-18 04:17:22,831] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_INPUT_R2_T1_2_fastqc.zip' as it matched the path_filters for 'FastQC (library; raw)'
[2020-03-18 04:17:22,861] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_T15_R2_T1_1_fastqc.zip' as it matched the path_filters for 'FastQC (library; raw)'
[2020-03-18 04:17:22,972] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_T0_R2_T1_2_fastqc.zip' as it matched the path_filters for 'FastQC (library; raw)'
[2020-03-18 04:17:23,065] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_T15_R2_T1_2_fastqc.zip' as it matched the path_filters for 'FastQC (library; raw)'
[2020-03-18 04:17:23,154] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_INPUT_R1_T1_1_fastqc.zip' as it matched the path_filters for 'FastQC (library; raw)'
[2020-03-18 04:17:23,159] multiqc.modules.fastqc.fastqc                      [INFO   ]  Found 12 reports
[2020-03-18 04:17:29,803] multiqc.modules.base_module                        [DEBUG  ]  cutadapt - Selecting 'SPT5_INPUT_R1_T1_1.fastq.gz_trimming_report.txt' as it matched the path_filters for 'cutadapt (library; trimmed)'
[2020-03-18 04:17:29,805] multiqc.modules.base_module                        [DEBUG  ]  cutadapt - Selecting 'SPT5_T0_R2_T1_2.fastq.gz_trimming_report.txt' as it matched the path_filters for 'cutadapt (library; trimmed)'
[2020-03-18 04:17:29,806] multiqc.modules.base_module                        [DEBUG  ]  cutadapt - Selecting 'SPT5_T0_R1_T1_2.fastq.gz_trimming_report.txt' as it matched the path_filters for 'cutadapt (library; trimmed)'
[2020-03-18 04:17:29,807] multiqc.modules.base_module                        [DEBUG  ]  cutadapt - Selecting 'SPT5_INPUT_R1_T1_2.fastq.gz_trimming_report.txt' as it matched the path_filters for 'cutadapt (library; trimmed)'
[2020-03-18 04:17:29,808] multiqc.modules.base_module                        [DEBUG  ]  cutadapt - Selecting 'SPT5_T15_R2_T1_1.fastq.gz_trimming_report.txt' as it matched the path_filters for 'cutadapt (library; trimmed)'
[2020-03-18 04:17:29,809] multiqc.modules.base_module                        [DEBUG  ]  cutadapt - Selecting 'SPT5_T15_R1_T1_2.fastq.gz_trimming_report.txt' as it matched the path_filters for 'cutadapt (library; trimmed)'
[2020-03-18 04:17:29,810] multiqc.modules.base_module                        [DEBUG  ]  cutadapt - Selecting 'SPT5_T0_R1_T1_1.fastq.gz_trimming_report.txt' as it matched the path_filters for 'cutadapt (library; trimmed)'
[2020-03-18 04:17:29,811] multiqc.modules.base_module                        [DEBUG  ]  cutadapt - Selecting 'SPT5_T15_R2_T1_2.fastq.gz_trimming_report.txt' as it matched the path_filters for 'cutadapt (library; trimmed)'
[2020-03-18 04:17:29,812] multiqc.modules.base_module                        [DEBUG  ]  cutadapt - Selecting 'SPT5_T15_R1_T1_1.fastq.gz_trimming_report.txt' as it matched the path_filters for 'cutadapt (library; trimmed)'
[2020-03-18 04:17:29,813] multiqc.modules.base_module                        [DEBUG  ]  cutadapt - Selecting 'SPT5_INPUT_R2_T1_2.fastq.gz_trimming_report.txt' as it matched the path_filters for 'cutadapt (library; trimmed)'
[2020-03-18 04:17:29,814] multiqc.modules.base_module                        [DEBUG  ]  cutadapt - Selecting 'SPT5_INPUT_R2_T1_1.fastq.gz_trimming_report.txt' as it matched the path_filters for 'cutadapt (library; trimmed)'
[2020-03-18 04:17:29,815] multiqc.modules.base_module                        [DEBUG  ]  cutadapt - Selecting 'SPT5_T0_R2_T1_1.fastq.gz_trimming_report.txt' as it matched the path_filters for 'cutadapt (library; trimmed)'
[2020-03-18 04:17:29,816] multiqc.modules.cutadapt.cutadapt                  [INFO   ]  Found 12 reports
[2020-03-18 04:17:31,266] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_T15_R1_T1_2_val_2_fastqc.zip' as it matched the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:31,376] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_T0_R2_T1_1_val_1_fastqc.zip' as it matched the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:31,521] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_T0_R2_T1_2_val_2_fastqc.zip' as it matched the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:31,629] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_T0_R1_T1_2_val_2_fastqc.zip' as it matched the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:31,740] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_T0_R1_T1_1_val_1_fastqc.zip' as it matched the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:31,877] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_T15_R1_T1_1_val_1_fastqc.zip' as it matched the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:31,964] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_T15_R2_T1_1_val_1_fastqc.zip' as it matched the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:32,106] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_INPUT_R1_T1_2_val_2_fastqc.zip' as it matched the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:32,135] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_INPUT_R2_T1_2_val_2_fastqc.zip' as it matched the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:32,162] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_INPUT_R2_T1_1_val_1_fastqc.zip' as it matched the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:32,204] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_INPUT_R1_T1_1_val_1_fastqc.zip' as it matched the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:32,241] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Selecting 'SPT5_T15_R2_T1_2_val_2_fastqc.zip' as it matched the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:32,332] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_T0_R2_T1_1_fastqc.zip' as it didn't match the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:32,332] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_T0_R1_T1_2_fastqc.zip' as it didn't match the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:32,332] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_INPUT_R2_T1_1_fastqc.zip' as it didn't match the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:32,333] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_INPUT_R1_T1_2_fastqc.zip' as it didn't match the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:32,333] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_T15_R1_T1_2_fastqc.zip' as it didn't match the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:32,333] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_T15_R1_T1_1_fastqc.zip' as it didn't match the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:32,333] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_T0_R1_T1_1_fastqc.zip' as it didn't match the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:32,333] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_INPUT_R2_T1_2_fastqc.zip' as it didn't match the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:32,333] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_T15_R2_T1_1_fastqc.zip' as it didn't match the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:32,333] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_T0_R2_T1_2_fastqc.zip' as it didn't match the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:32,333] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_T15_R2_T1_2_fastqc.zip' as it didn't match the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:32,333] multiqc.modules.base_module                        [DEBUG  ]  fastqc/zip - Skipping 'SPT5_INPUT_R1_T1_1_fastqc.zip' as it didn't match the path_filters for 'FastQC (library; trimmed)'
[2020-03-18 04:17:32,333] multiqc.modules.fastqc.fastqc                      [INFO   ]  Found 12 reports
[2020-03-18 04:17:39,096] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_INPUT_R1.mLb.clN.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:39,096] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_INPUT_R1.mLb.mkD.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:39,096] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T15_R2.mLb.clN.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:39,096] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T15_R1.mLb.clN.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:39,096] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_INPUT_R2.mLb.mkD.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:39,096] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T0_R2.mLb.mkD.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:39,096] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T0_R1.mLb.mkD.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:39,096] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T0_R2.mLb.clN.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:39,096] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_INPUT_R2.mLb.clN.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:39,096] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T0_R1.mLb.clN.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:39,096] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T15_R2.mLb.mkD.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:39,096] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T15_R1.mLb.mkD.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:39,096] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Selecting 'SPT5_INPUT_R1_T1.Lb.sorted.bam.stats' as it matched the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:39,112] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Selecting 'SPT5_T0_R1_T1.Lb.sorted.bam.stats' as it matched the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:39,115] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Selecting 'SPT5_INPUT_R2_T1.Lb.sorted.bam.stats' as it matched the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:39,116] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Selecting 'SPT5_T15_R2_T1.Lb.sorted.bam.stats' as it matched the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:39,118] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Selecting 'SPT5_T0_R2_T1.Lb.sorted.bam.stats' as it matched the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:39,121] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Selecting 'SPT5_T15_R1_T1.Lb.sorted.bam.stats' as it matched the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,060] multiqc.modules.samtools.samtools                  [INFO   ]  Found 6 stats reports
[2020-03-18 04:17:40,060] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_INPUT_R1.mLb.mkD.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,060] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T0_R1.mLb.mkD.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,060] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_INPUT_R1.mLb.clN.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,060] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T15_R1.mLb.clN.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,060] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T15_R1.mLb.mkD.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,060] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T15_R2.mLb.clN.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,060] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T0_R2.mLb.mkD.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,060] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T0_R2.mLb.clN.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,060] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_INPUT_R2.mLb.clN.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,060] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_INPUT_R2.mLb.mkD.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,061] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T0_R1.mLb.clN.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,061] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T15_R2.mLb.mkD.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,061] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Selecting 'SPT5_T15_R2_T1.Lb.sorted.bam.flagstat' as it matched the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,063] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Selecting 'SPT5_T0_R1_T1.Lb.sorted.bam.flagstat' as it matched the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,064] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Selecting 'SPT5_INPUT_R1_T1.Lb.sorted.bam.flagstat' as it matched the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,064] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Selecting 'SPT5_T15_R1_T1.Lb.sorted.bam.flagstat' as it matched the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,065] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Selecting 'SPT5_T0_R2_T1.Lb.sorted.bam.flagstat' as it matched the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,065] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Selecting 'SPT5_INPUT_R2_T1.Lb.sorted.bam.flagstat' as it matched the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,067] multiqc.modules.samtools.samtools                  [INFO   ]  Found 6 flagstat reports
[2020-03-18 04:17:40,067] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T0_R1.mLb.mkD.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,067] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T15_R1.mLb.mkD.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,067] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T0_R1.mLb.clN.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,068] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_INPUT_R2.mLb.clN.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,068] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T0_R2.mLb.clN.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,068] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T15_R1.mLb.clN.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,068] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T0_R2.mLb.mkD.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,068] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_INPUT_R1.mLb.clN.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,068] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_INPUT_R2.mLb.mkD.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,068] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T15_R2.mLb.clN.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,068] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_INPUT_R1.mLb.mkD.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,068] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T15_R2.mLb.mkD.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,068] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Selecting 'SPT5_INPUT_R2_T1.Lb.sorted.bam.idxstats' as it matched the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,073] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Selecting 'SPT5_T0_R1_T1.Lb.sorted.bam.idxstats' as it matched the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,074] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Selecting 'SPT5_T15_R2_T1.Lb.sorted.bam.idxstats' as it matched the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,074] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Selecting 'SPT5_T15_R1_T1.Lb.sorted.bam.idxstats' as it matched the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,075] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Selecting 'SPT5_T0_R2_T1.Lb.sorted.bam.idxstats' as it matched the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:40,076] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Selecting 'SPT5_INPUT_R1_T1.Lb.sorted.bam.idxstats' as it matched the path_filters for 'SAMTools (library)'
[2020-03-18 04:17:41,356] multiqc.modules.samtools.samtools                  [INFO   ]  Found 6 idxstats reports
[2020-03-18 04:17:41,359] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_INPUT_R1.mLb.clN.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:41,359] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Selecting 'SPT5_INPUT_R1.mLb.mkD.sorted.bam.stats' as it matched the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:41,360] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T15_R2.mLb.clN.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:41,361] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T15_R1.mLb.clN.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:41,361] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Selecting 'SPT5_INPUT_R2.mLb.mkD.sorted.bam.stats' as it matched the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:41,362] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Selecting 'SPT5_T0_R2.mLb.mkD.sorted.bam.stats' as it matched the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:41,364] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Selecting 'SPT5_T0_R1.mLb.mkD.sorted.bam.stats' as it matched the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:41,367] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T0_R2.mLb.clN.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:41,367] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_INPUT_R2.mLb.clN.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:41,367] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T0_R1.mLb.clN.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:41,367] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Selecting 'SPT5_T15_R2.mLb.mkD.sorted.bam.stats' as it matched the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:41,369] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Selecting 'SPT5_T15_R1.mLb.mkD.sorted.bam.stats' as it matched the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:41,371] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_INPUT_R1_T1.Lb.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:41,371] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T0_R1_T1.Lb.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:41,371] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_INPUT_R2_T1.Lb.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:41,371] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T15_R2_T1.Lb.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:41,372] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T0_R2_T1.Lb.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:41,372] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T15_R1_T1.Lb.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,336] multiqc.modules.samtools.samtools                  [INFO   ]  Found 6 stats reports
[2020-03-18 04:17:42,336] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Selecting 'SPT5_INPUT_R1.mLb.mkD.sorted.bam.flagstat' as it matched the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,338] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Selecting 'SPT5_T0_R1.mLb.mkD.sorted.bam.flagstat' as it matched the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,338] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_INPUT_R1.mLb.clN.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,339] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T15_R1.mLb.clN.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,339] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Selecting 'SPT5_T15_R1.mLb.mkD.sorted.bam.flagstat' as it matched the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,339] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T15_R2.mLb.clN.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,339] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Selecting 'SPT5_T0_R2.mLb.mkD.sorted.bam.flagstat' as it matched the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,340] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T0_R2.mLb.clN.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,340] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_INPUT_R2.mLb.clN.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,340] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Selecting 'SPT5_INPUT_R2.mLb.mkD.sorted.bam.flagstat' as it matched the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,340] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T0_R1.mLb.clN.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,340] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Selecting 'SPT5_T15_R2.mLb.mkD.sorted.bam.flagstat' as it matched the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,341] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T15_R2_T1.Lb.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,341] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T0_R1_T1.Lb.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,341] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_INPUT_R1_T1.Lb.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,341] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T15_R1_T1.Lb.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,341] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T0_R2_T1.Lb.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,341] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_INPUT_R2_T1.Lb.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,343] multiqc.modules.samtools.samtools                  [INFO   ]  Found 6 flagstat reports
[2020-03-18 04:17:42,343] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Selecting 'SPT5_T0_R1.mLb.mkD.sorted.bam.idxstats' as it matched the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,344] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Selecting 'SPT5_T15_R1.mLb.mkD.sorted.bam.idxstats' as it matched the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,344] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T0_R1.mLb.clN.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,344] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_INPUT_R2.mLb.clN.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,344] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T0_R2.mLb.clN.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,344] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T15_R1.mLb.clN.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,344] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Selecting 'SPT5_T0_R2.mLb.mkD.sorted.bam.idxstats' as it matched the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,344] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_INPUT_R1.mLb.clN.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,344] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Selecting 'SPT5_INPUT_R2.mLb.mkD.sorted.bam.idxstats' as it matched the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,345] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T15_R2.mLb.clN.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,345] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Selecting 'SPT5_INPUT_R1.mLb.mkD.sorted.bam.idxstats' as it matched the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,345] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Selecting 'SPT5_T15_R2.mLb.mkD.sorted.bam.idxstats' as it matched the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,345] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_INPUT_R2_T1.Lb.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,345] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T0_R1_T1.Lb.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,345] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T15_R2_T1.Lb.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,345] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T15_R1_T1.Lb.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,345] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T0_R2_T1.Lb.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:42,346] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_INPUT_R1_T1.Lb.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; unfiltered)'
[2020-03-18 04:17:43,566] multiqc.modules.samtools.samtools                  [INFO   ]  Found 6 idxstats reports
[2020-03-18 04:17:43,573] multiqc.modules.base_module                        [DEBUG  ]  preseq - Selecting 'SPT5_T15_R2.mLb.clN.ccurve.txt' as it matched the path_filters for 'Preseq (merged library; unfiltered)'
[2020-03-18 04:17:43,586] multiqc.modules.base_module                        [DEBUG  ]  preseq - Selecting 'SPT5_T0_R2.mLb.clN.ccurve.txt' as it matched the path_filters for 'Preseq (merged library; unfiltered)'
[2020-03-18 04:17:43,601] multiqc.modules.base_module                        [DEBUG  ]  preseq - Selecting 'SPT5_T15_R1.mLb.clN.ccurve.txt' as it matched the path_filters for 'Preseq (merged library; unfiltered)'
[2020-03-18 04:17:43,614] multiqc.modules.base_module                        [DEBUG  ]  preseq - Selecting 'SPT5_INPUT_R1.mLb.clN.ccurve.txt' as it matched the path_filters for 'Preseq (merged library; unfiltered)'
[2020-03-18 04:17:43,655] multiqc.modules.base_module                        [DEBUG  ]  preseq - Selecting 'SPT5_T0_R1.mLb.clN.ccurve.txt' as it matched the path_filters for 'Preseq (merged library; unfiltered)'
[2020-03-18 04:17:43,667] multiqc.modules.base_module                        [DEBUG  ]  preseq - Selecting 'SPT5_INPUT_R2.mLb.clN.ccurve.txt' as it matched the path_filters for 'Preseq (merged library; unfiltered)'
[2020-03-18 04:17:43,681] multiqc.modules.preseq.preseq                      [INFO   ]  Found 6 reports
[2020-03-18 04:17:44,552] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Selecting 'SPT5_INPUT_R1.mLb.clN.sorted.bam.stats' as it matched the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:44,553] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_INPUT_R1.mLb.mkD.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:44,553] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Selecting 'SPT5_T15_R2.mLb.clN.sorted.bam.stats' as it matched the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:44,556] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Selecting 'SPT5_T15_R1.mLb.clN.sorted.bam.stats' as it matched the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:44,558] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_INPUT_R2.mLb.mkD.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:44,558] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T0_R2.mLb.mkD.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:44,558] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T0_R1.mLb.mkD.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:44,558] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Selecting 'SPT5_T0_R2.mLb.clN.sorted.bam.stats' as it matched the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:44,561] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Selecting 'SPT5_INPUT_R2.mLb.clN.sorted.bam.stats' as it matched the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:44,562] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Selecting 'SPT5_T0_R1.mLb.clN.sorted.bam.stats' as it matched the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:44,564] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T15_R2.mLb.mkD.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:44,564] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T15_R1.mLb.mkD.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:44,564] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_INPUT_R1_T1.Lb.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:44,564] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T0_R1_T1.Lb.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:44,564] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_INPUT_R2_T1.Lb.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:44,565] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T15_R2_T1.Lb.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:44,565] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T0_R2_T1.Lb.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:44,565] multiqc.modules.base_module                        [DEBUG  ]  samtools/stats - Skipping 'SPT5_T15_R1_T1.Lb.sorted.bam.stats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,448] multiqc.modules.samtools.samtools                  [INFO   ]  Found 6 stats reports
[2020-03-18 04:17:45,449] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_INPUT_R1.mLb.mkD.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,449] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T0_R1.mLb.mkD.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,449] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Selecting 'SPT5_INPUT_R1.mLb.clN.sorted.bam.flagstat' as it matched the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,449] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Selecting 'SPT5_T15_R1.mLb.clN.sorted.bam.flagstat' as it matched the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,450] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T15_R1.mLb.mkD.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,450] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Selecting 'SPT5_T15_R2.mLb.clN.sorted.bam.flagstat' as it matched the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,450] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T0_R2.mLb.mkD.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,450] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Selecting 'SPT5_T0_R2.mLb.clN.sorted.bam.flagstat' as it matched the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,451] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Selecting 'SPT5_INPUT_R2.mLb.clN.sorted.bam.flagstat' as it matched the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,451] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_INPUT_R2.mLb.mkD.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,452] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Selecting 'SPT5_T0_R1.mLb.clN.sorted.bam.flagstat' as it matched the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,452] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T15_R2.mLb.mkD.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,452] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T15_R2_T1.Lb.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,452] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T0_R1_T1.Lb.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,452] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_INPUT_R1_T1.Lb.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,452] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T15_R1_T1.Lb.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,452] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_T0_R2_T1.Lb.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,452] multiqc.modules.base_module                        [DEBUG  ]  samtools/flagstat - Skipping 'SPT5_INPUT_R2_T1.Lb.sorted.bam.flagstat' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,454] multiqc.modules.samtools.samtools                  [INFO   ]  Found 6 flagstat reports
[2020-03-18 04:17:45,454] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T0_R1.mLb.mkD.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,454] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T15_R1.mLb.mkD.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,455] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Selecting 'SPT5_T0_R1.mLb.clN.sorted.bam.idxstats' as it matched the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,455] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Selecting 'SPT5_INPUT_R2.mLb.clN.sorted.bam.idxstats' as it matched the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,455] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Selecting 'SPT5_T0_R2.mLb.clN.sorted.bam.idxstats' as it matched the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,472] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Selecting 'SPT5_T15_R1.mLb.clN.sorted.bam.idxstats' as it matched the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,473] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T0_R2.mLb.mkD.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,473] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Selecting 'SPT5_INPUT_R1.mLb.clN.sorted.bam.idxstats' as it matched the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,473] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_INPUT_R2.mLb.mkD.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,473] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Selecting 'SPT5_T15_R2.mLb.clN.sorted.bam.idxstats' as it matched the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,474] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_INPUT_R1.mLb.mkD.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,474] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T15_R2.mLb.mkD.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,474] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_INPUT_R2_T1.Lb.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,474] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T0_R1_T1.Lb.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,474] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T15_R2_T1.Lb.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,474] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T15_R1_T1.Lb.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,474] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_T0_R2_T1.Lb.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:45,474] multiqc.modules.base_module                        [DEBUG  ]  samtools/idxstats - Skipping 'SPT5_INPUT_R1_T1.Lb.sorted.bam.idxstats' as it didn't match the path_filters for 'SAMTools (merged library; filtered)'
[2020-03-18 04:17:46,749] multiqc.modules.samtools.samtools                  [INFO   ]  Found 6 idxstats reports
[2020-03-18 04:17:46,791] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_T0_R2.mLb.clN.CollectMultipleMetrics.base_distribution_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,792] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_INPUT_R2.mLb.clN.CollectMultipleMetrics.alignment_summary_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,792] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_INPUT_R1.mLb.clN.CollectMultipleMetrics.quality_distribution_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,792] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_INPUT_R1.mLb.clN.CollectMultipleMetrics.base_distribution_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,793] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_T15_R1.mLb.clN.CollectMultipleMetrics.quality_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,793] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_T15_R1.mLb.clN.CollectMultipleMetrics.quality_distribution_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,794] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_T0_R2.mLb.clN.CollectMultipleMetrics.alignment_summary_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,794] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_INPUT_R1.mLb.clN.CollectMultipleMetrics.quality_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,794] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_INPUT_R2.mLb.clN.CollectMultipleMetrics.quality_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,795] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_T0_R1.mLb.clN.CollectMultipleMetrics.quality_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,795] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_T0_R1.mLb.clN.CollectMultipleMetrics.base_distribution_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,796] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_INPUT_R2.mLb.clN.CollectMultipleMetrics.quality_distribution_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,796] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_T15_R2.mLb.clN.CollectMultipleMetrics.base_distribution_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,797] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_T0_R2.mLb.clN.CollectMultipleMetrics.quality_distribution_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,797] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_INPUT_R1.mLb.clN.CollectMultipleMetrics.insert_size_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,797] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_T15_R2.mLb.clN.CollectMultipleMetrics.quality_distribution_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,798] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_T15_R1.mLb.clN.CollectMultipleMetrics.insert_size_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,799] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_T0_R2.mLb.clN.CollectMultipleMetrics.quality_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,800] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_T15_R2.mLb.clN.CollectMultipleMetrics.alignment_summary_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,800] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_T15_R1.mLb.clN.CollectMultipleMetrics.base_distribution_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,800] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_INPUT_R2.mLb.clN.CollectMultipleMetrics.base_distribution_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,801] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_T0_R1.mLb.clN.CollectMultipleMetrics.insert_size_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,802] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_T0_R1.mLb.clN.CollectMultipleMetrics.quality_distribution_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,802] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_T0_R1.mLb.clN.CollectMultipleMetrics.alignment_summary_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,803] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_INPUT_R1.mLb.clN.CollectMultipleMetrics.alignment_summary_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,803] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_T0_R2.mLb.clN.CollectMultipleMetrics.insert_size_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,805] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_T15_R2.mLb.clN.CollectMultipleMetrics.quality_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,805] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_INPUT_R2.mLb.clN.CollectMultipleMetrics.insert_size_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,806] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_T15_R2.mLb.clN.CollectMultipleMetrics.insert_size_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:46,807] multiqc.modules.base_module                        [DEBUG  ]  picard/alignment_metrics - Selecting 'SPT5_T15_R1.mLb.clN.CollectMultipleMetrics.alignment_summary_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:47,589] multiqc.modules.picard.picard                      [INFO   ]  Found 6 AlignmentSummaryMetrics reports
[2020-03-18 04:17:47,589] multiqc.modules.base_module                        [DEBUG  ]  picard/basedistributionbycycle - Selecting 'SPT5_T0_R2.mLb.clN.CollectMultipleMetrics.base_distribution_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:47,590] multiqc.modules.base_module                        [DEBUG  ]  picard/basedistributionbycycle - Selecting 'SPT5_INPUT_R1.mLb.clN.CollectMultipleMetrics.base_distribution_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:47,591] multiqc.modules.base_module                        [DEBUG  ]  picard/basedistributionbycycle - Selecting 'SPT5_T0_R1.mLb.clN.CollectMultipleMetrics.base_distribution_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:47,592] multiqc.modules.base_module                        [DEBUG  ]  picard/basedistributionbycycle - Selecting 'SPT5_T15_R2.mLb.clN.CollectMultipleMetrics.base_distribution_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:47,593] multiqc.modules.base_module                        [DEBUG  ]  picard/basedistributionbycycle - Selecting 'SPT5_T15_R1.mLb.clN.CollectMultipleMetrics.base_distribution_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:47,594] multiqc.modules.base_module                        [DEBUG  ]  picard/basedistributionbycycle - Selecting 'SPT5_INPUT_R2.mLb.clN.CollectMultipleMetrics.base_distribution_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,047] multiqc.modules.picard.picard                      [INFO   ]  Found 12 BaseDistributionByCycleMetrics reports
[2020-03-18 04:17:51,047] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_T0_R2.mLb.clN.CollectMultipleMetrics.base_distribution_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,048] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_INPUT_R2.mLb.clN.CollectMultipleMetrics.alignment_summary_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,048] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_INPUT_R1.mLb.clN.CollectMultipleMetrics.quality_distribution_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,049] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_INPUT_R1.mLb.clN.CollectMultipleMetrics.base_distribution_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,049] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_T15_R1.mLb.clN.CollectMultipleMetrics.quality_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,049] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_T15_R1.mLb.clN.CollectMultipleMetrics.quality_distribution_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,050] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_T0_R2.mLb.clN.CollectMultipleMetrics.alignment_summary_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,050] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_INPUT_R1.mLb.clN.CollectMultipleMetrics.quality_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,050] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_INPUT_R2.mLb.clN.CollectMultipleMetrics.quality_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,051] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_T0_R1.mLb.clN.CollectMultipleMetrics.quality_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,051] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_T0_R1.mLb.clN.CollectMultipleMetrics.base_distribution_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,052] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_INPUT_R2.mLb.clN.CollectMultipleMetrics.quality_distribution_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,052] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_T15_R2.mLb.clN.CollectMultipleMetrics.base_distribution_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,053] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_T0_R2.mLb.clN.CollectMultipleMetrics.quality_distribution_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,053] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_INPUT_R1.mLb.clN.CollectMultipleMetrics.insert_size_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,054] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_T15_R2.mLb.clN.CollectMultipleMetrics.quality_distribution_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,055] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_T15_R1.mLb.clN.CollectMultipleMetrics.insert_size_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,059] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_T0_R2.mLb.clN.CollectMultipleMetrics.quality_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,059] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_T15_R2.mLb.clN.CollectMultipleMetrics.alignment_summary_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,059] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_T15_R1.mLb.clN.CollectMultipleMetrics.base_distribution_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,060] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_INPUT_R2.mLb.clN.CollectMultipleMetrics.base_distribution_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,060] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_T0_R1.mLb.clN.CollectMultipleMetrics.insert_size_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,064] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_T0_R1.mLb.clN.CollectMultipleMetrics.quality_distribution_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,064] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_T0_R1.mLb.clN.CollectMultipleMetrics.alignment_summary_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,064] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_INPUT_R1.mLb.clN.CollectMultipleMetrics.alignment_summary_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,065] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_T0_R2.mLb.clN.CollectMultipleMetrics.insert_size_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,069] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_T15_R2.mLb.clN.CollectMultipleMetrics.quality_by_cycle_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,069] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_INPUT_R2.mLb.clN.CollectMultipleMetrics.insert_size_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,071] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_T15_R2.mLb.clN.CollectMultipleMetrics.insert_size_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:51,075] multiqc.modules.base_module                        [DEBUG  ]  picard/insertsize - Selecting 'SPT5_T15_R1.mLb.clN.CollectMultipleMetrics.alignment_summary_metrics' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:52,291] multiqc.modules.picard.picard                      [INFO   ]  Found 6 InsertSizeMetrics reports
[2020-03-18 04:17:52,291] multiqc.modules.base_module                        [DEBUG  ]  picard/markdups - Selecting 'SPT5_T0_R1.mLb.mkD.MarkDuplicates.metrics.txt' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:52,292] multiqc.modules.base_module                        [DEBUG  ]  picard/markdups - Selecting 'SPT5_T15_R1.mLb.mkD.MarkDuplicates.metrics.txt' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:52,292] multiqc.modules.base_module                        [DEBUG  ]  picard/markdups - Selecting 'SPT5_T15_R2.mLb.mkD.MarkDuplicates.metrics.txt' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:52,292] multiqc.modules.base_module                        [DEBUG  ]  picard/markdups - Selecting 'SPT5_INPUT_R2.mLb.mkD.MarkDuplicates.metrics.txt' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:52,293] multiqc.modules.base_module                        [DEBUG  ]  picard/markdups - Selecting 'SPT5_INPUT_R1.mLb.mkD.MarkDuplicates.metrics.txt' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:52,293] multiqc.modules.base_module                        [DEBUG  ]  picard/markdups - Selecting 'SPT5_T0_R2.mLb.mkD.MarkDuplicates.metrics.txt' as it matched the path_filters for 'Picard (merged library; filtered)'
[2020-03-18 04:17:53,407] multiqc.modules.picard.picard                      [INFO   ]  Found 6 MarkDuplicates reports
[2020-03-18 04:17:53,420] multiqc.modules.base_module                        [DEBUG  ]  deeptools/plotFingerprintOutRawCounts - Selecting 'SPT5_T0_R1.plotFingerprint.raw.txt' as it matched the path_filters for 'deepTools'
[2020-03-18 04:17:53,421] multiqc.modules.base_module                        [DEBUG  ]  deeptools/plotFingerprintOutRawCounts - Selecting 'SPT5_T15_R1.plotFingerprint.raw.txt' as it matched the path_filters for 'deepTools'
[2020-03-18 04:17:53,422] multiqc.modules.deeptools.plotFingerprint          [WARNING]  Replacing duplicate sample SPT5_INPUT_R1.
[2020-03-18 04:17:53,422] multiqc.modules.base_module                        [DEBUG  ]  deeptools/plotFingerprintOutRawCounts - Selecting 'SPT5_T0_R2.plotFingerprint.raw.txt' as it matched the path_filters for 'deepTools'
[2020-03-18 04:17:53,423] multiqc.modules.base_module                        [DEBUG  ]  deeptools/plotFingerprintOutRawCounts - Selecting 'SPT5_T15_R2.plotFingerprint.raw.txt' as it matched the path_filters for 'deepTools'
[2020-03-18 04:17:53,424] multiqc.modules.deeptools.plotFingerprint          [WARNING]  Replacing duplicate sample SPT5_INPUT_R2.
[2020-03-18 04:17:54,006] multiqc.modules.deeptools.deeptools                [DEBUG  ]  Found 0 and 6 deepTools plotFingerprint --outQualityMetrics and --outRawCounts samples, respectively
[2020-03-18 04:17:54,007] multiqc.modules.base_module                        [DEBUG  ]  deeptools/plotProfile - Selecting 'SPT5_T0_R1.plotProfile.tab' as it matched the path_filters for 'deepTools'
[2020-03-18 04:17:54,011] multiqc.modules.base_module                        [DEBUG  ]  deeptools/plotProfile - Selecting 'SPT5_T15_R1.plotProfile.tab' as it matched the path_filters for 'deepTools'
[2020-03-18 04:17:54,016] multiqc.modules.base_module                        [DEBUG  ]  deeptools/plotProfile - Selecting 'SPT5_INPUT_R1.plotProfile.tab' as it matched the path_filters for 'deepTools'
[2020-03-18 04:17:54,020] multiqc.modules.base_module                        [DEBUG  ]  deeptools/plotProfile - Selecting 'SPT5_INPUT_R2.plotProfile.tab' as it matched the path_filters for 'deepTools'
[2020-03-18 04:17:54,025] multiqc.modules.base_module                        [DEBUG  ]  deeptools/plotProfile - Selecting 'SPT5_T15_R2.plotProfile.tab' as it matched the path_filters for 'deepTools'
[2020-03-18 04:17:54,029] multiqc.modules.base_module                        [DEBUG  ]  deeptools/plotProfile - Selecting 'SPT5_T0_R2.plotProfile.tab' as it matched the path_filters for 'deepTools'
[2020-03-18 04:17:54,698] multiqc.modules.deeptools.deeptools                [INFO   ]  Found 6 total deepTools samples
[2020-03-18 04:17:54,706] multiqc.modules.base_module                        [DEBUG  ]  featurecounts - Selecting 'SPT5.consensus_peaks.featureCounts.txt.summary' as it matched the path_filters for 'featureCounts'
[2020-03-18 04:17:54,706] multiqc.modules.featureCounts.feature_counts       [INFO   ]  Found 4 reports
[2020-03-18 04:17:55,743] multiqc                                            [INFO   ]  Compressing plot data
[2020-03-18 04:17:57,478] multiqc                                            [INFO   ]  Report      : multiqc_report.html
[2020-03-18 04:17:57,478] multiqc                                            [INFO   ]  Data        : multiqc_data
[2020-03-18 04:17:57,478] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_picard_base_distribution_by_cycle__Thymine.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,478] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_fastqc_sequence_duplication_levels_plot-2_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,479] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/multiqc_sources.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,479] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/multiqc_featureCounts.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,479] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_cutadapt_plot_Counts.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,479] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_picard_base_distribution_by_cycle__Cytosine.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,479] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_preseq_plot_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,480] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_fastqc_sequence_length_distribution_plot_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,480] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Percentages.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,480] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_mqc_mplplot_meucwvzdlf_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,480] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_fastqc_sequence_duplication_levels_plot_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,480] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_samtools-idxstats-mapped-reads-plot-2_Normalised_Counts.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,481] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/multiqc_fastqc.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,481] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_read_distribution_profile_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,481] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/multiqc_data.json' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,485] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_fastqc_sequence_counts_plot-2_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,485] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_fastqc_per_sequence_quality_scores_plot-2_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,485] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot-2_Percentages.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,485] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot-2_Counts.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,485] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_picard_base_distribution_by_cycle__Adenine.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,486] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/multiqc_samtools_idxstats.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,486] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_mqc_mplplot_bjewgvhuzs_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,486] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_samtools_alignment_plot-2_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,486] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_fastqc_per_base_n_content_plot_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,486] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_samtools-idxstats-mapped-reads-plot-2_Counts.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,487] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_cutadapt_plot_Obs_Exp.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,487] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/multiqc_samtools_stats.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,487] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/multiqc_samtools_flagstat.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,487] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_fastqc_adapter_content_plot_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,487] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_samtools_alignment_plot-3_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,488] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/multiqc_picard_baseContent.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,488] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/multiqc_picard_AlignmentSummaryMetrics.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,488] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_samtools-idxstats-mapped-reads-plot-3_Normalised_Counts.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,488] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Counts.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,488] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_samtools-idxstats-mapped-reads-plot-3_Counts.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,488] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_fastqc_per_sequence_quality_scores_plot_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,489] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/multiqc_picard_insertSize.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,489] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/multiqc_general_stats.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,489] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_picard_insert_size_Counts.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,489] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/multiqc_cutadapt.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,489] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_picard_insert_size_Percentages.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,490] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_picard_base_distribution_by_cycle__Guanine.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,490] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_samtools-idxstats-mapped-reads-plot_Normalised_Counts.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,490] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_fastqc_per_base_sequence_quality_plot-2_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,490] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/multiqc_phantompeakqualtools.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,490] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_fastqc_sequence_counts_plot_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,491] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_fastqc_per_base_n_content_plot-2_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,491] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_picard_deduplication_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,491] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_mqc_mplplot_nqzocsjgyi_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,491] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_mqc_mplplot_nfpdomrxzt_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,491] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_picard_aligned_reads_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,492] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_samtools_alignment_plot_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,492] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_featureCounts_assignment_plot_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,492] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_deeptools_fingerprint_plot_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,492] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_fastqc_per_base_sequence_quality_plot_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,492] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/multiqc_picard_dups.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,493] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_mqc_mplplot_jsxiymlnpa_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,493] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_picard_base_distribution_by_cycle__Undetermined.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,493] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_mqc_mplplot_ambrgnkhfq_1.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,493] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpwfeXtk/multiqc_data/mqc_samtools-idxstats-mapped-reads-plot_Counts.txt' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_data'
[2020-03-18 04:17:57,493] multiqc                                            [INFO   ]  Plots       : multiqc_plots
[2020-03-18 04:17:57,494] multiqc                                            [DEBUG  ]  Moving plots directory from '/tmp/tmpwfeXtk/multiqc_plots/pdf' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_plots'
[2020-03-18 04:17:57,500] multiqc                                            [DEBUG  ]  Moving plots directory from '/tmp/tmpwfeXtk/multiqc_plots/svg' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_plots'
[2020-03-18 04:17:57,508] multiqc                                            [DEBUG  ]  Moving plots directory from '/tmp/tmpwfeXtk/multiqc_plots/png' to '/home/agalicina/DANIO/CHIPSEQ/chipseq/work/46/4bdec7237f8a2311b95879906d7755/multiqc_plots'
[2020-03-18 04:17:57,705] multiqc                                            [INFO   ]  MultiQC complete