Basic Statistics
Measure | Value |
---|---|
Filename | NAN20_S3_R1_001.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1020808 |
Filtered Sequences | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 1847 | 0.1809351023894797 | No Hit |
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 1477 | 0.14468930494275123 | No Hit |
GATCTGGTTTTATTACATTCTGAATTGGACGTTGAAAATGAGCTTATCTC | 1070 | 0.1048189277513499 | No Hit |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGGGG | 1049670 | 15.031044 | 32.73486 | 145-147 |
GATCG | 425950 | 3.5611732 | 6.3403797 | 1 |
GCCCC | 189710 | 3.4395192 | 4.3161464 | 9 |
GGGGC | 214485 | 3.258 | 4.450054 | 140-144 |
GGCCC | 187995 | 3.213187 | 3.9818816 | 4 |
CCCTG | 245040 | 3.1514792 | 4.498684 | 1 |
GGGCC | 192720 | 3.1052651 | 3.3652709 | 60-64 |
CCAGG | 255110 | 3.0067134 | 3.6802917 | 8 |
CCAGC | 206310 | 2.5793045 | 10.814294 | 4 |
TCCAG | 246485 | 2.1859627 | 9.059679 | 3 |
CAGCC | 147015 | 1.8379933 | 6.964515 | 5 |
GATCC | 194440 | 1.7243994 | 20.646122 | 1 |
GATCT | 250315 | 1.5747408 | 18.297808 | 1 |
ATCTG | 226795 | 1.4267756 | 9.389806 | 2 |
ATCCA | 207305 | 1.3447906 | 9.172219 | 2 |
TCTGG | 152780 | 1.3140023 | 6.0680146 | 3 |
GATCA | 213215 | 1.3039017 | 17.872437 | 1 |
ATCAG | 197020 | 1.2048622 | 6.264903 | 2 |