##FastQC 0.10.1 >>Basic Statistics pass #Measure Value Filename NAN20_S3_R1_001.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1020808 Filtered Sequences 0 Sequence length 151 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.26626162804367 32.0 32.0 32.0 32.0 32.0 2 31.356583216432472 32.0 32.0 32.0 32.0 32.0 3 31.65384675668686 32.0 32.0 32.0 32.0 32.0 4 31.681785409205258 32.0 32.0 32.0 32.0 32.0 5 31.723678693740645 32.0 32.0 32.0 32.0 32.0 6 35.383894914616654 36.0 36.0 36.0 36.0 36.0 7 35.33591429534251 36.0 36.0 36.0 36.0 36.0 8 35.354489776725885 36.0 36.0 36.0 36.0 36.0 9 35.392410717784344 36.0 36.0 36.0 36.0 36.0 10-14 35.37227392418555 36.0 36.0 36.0 36.0 36.0 15-19 35.35725778011144 36.0 36.0 36.0 36.0 36.0 20-24 35.28941465975972 36.0 36.0 36.0 36.0 36.0 25-29 35.17475117749861 36.0 36.0 36.0 36.0 36.0 30-34 35.054706271894425 36.0 36.0 36.0 36.0 36.0 35-39 34.93833766976748 36.0 36.0 36.0 36.0 36.0 40-44 34.80124685543217 36.0 36.0 36.0 34.4 36.0 45-49 34.69134136879805 36.0 36.0 36.0 32.0 36.0 50-54 34.57667259660974 36.0 36.0 36.0 32.0 36.0 55-59 34.450158501892616 36.0 36.0 36.0 32.0 36.0 60-64 34.32737106292271 36.0 36.0 36.0 32.0 36.0 65-69 34.136004028181596 36.0 36.0 36.0 32.0 36.0 70-74 34.01820930086755 36.0 36.0 36.0 32.0 36.0 75-79 33.87504153572464 36.0 36.0 36.0 32.0 36.0 80-84 33.74699355804421 36.0 36.0 36.0 28.0 36.0 85-89 33.55703599501571 36.0 36.0 36.0 27.0 36.0 90-94 33.35843547464362 36.0 36.0 36.0 27.0 36.0 95-99 33.212005195884046 36.0 36.0 36.0 22.2 36.0 100-104 33.08867015148784 36.0 36.0 36.0 21.0 36.0 105-109 32.97144281784625 36.0 36.0 36.0 15.4 36.0 110-114 32.88583494643459 36.0 36.0 36.0 14.0 36.0 115-119 32.76378261142154 36.0 33.6 36.0 14.0 36.0 120-124 32.64538718348602 36.0 32.0 36.0 14.0 36.0 125-129 32.51664073949264 36.0 32.0 36.0 14.0 36.0 130-134 32.39113055540317 36.0 32.0 36.0 14.0 36.0 135-139 32.217444808426265 36.0 32.0 36.0 14.0 36.0 140-144 32.04783818308634 36.0 32.0 36.0 14.0 36.0 145-149 31.82432915886239 36.0 32.0 36.0 14.0 36.0 150-151 30.265618510043026 34.0 29.5 36.0 14.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 3.0 14 2.0 15 19.0 16 62.0 17 167.0 18 404.0 19 848.0 20 1710.0 21 3331.0 22 6093.0 23 9464.0 24 12539.0 25 14782.0 26 16873.0 27 18662.0 28 20830.0 29 23331.0 30 26487.0 31 32451.0 32 43719.0 33 71362.0 34 170821.0 35 546848.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 24.952824180669182 32.45960907264978 20.588742468035075 21.998824278645962 2 19.254566507510763 36.05782512181598 27.405510569140734 17.28209780153252 3 17.806957734778486 27.81791001496877 34.826977484149566 19.54815476610318 4 18.313203676727742 28.488272421896966 28.85445616619922 24.344067735176072 5 19.559855015673982 30.908503134796238 29.810834639498434 19.72080721003135 6 20.915904882278593 30.65253813820875 28.88735388926447 19.544203090248182 7 21.413659292611936 30.038276115096778 29.063494069504408 19.48457052278688 8 19.97713573672594 29.439845142127748 30.092759943848346 20.49025917729796 9 20.2883018793991 29.32411185290041 30.206356747860756 20.181229519839736 10-14 20.773428250166486 30.125076974288874 29.438533911888708 19.66296086365593 15-19 20.877305036794382 29.782623176934347 29.397653623404207 19.942418162867064 20-24 20.835463999288407 29.609301498147154 29.354424869093844 20.200809633470598 25-29 20.987844922845433 29.289993808825947 29.46667737713654 20.255483891192075 30-34 21.191760520939216 29.07383446590643 29.337783688596343 20.396621324558016 35-39 21.160348952548496 29.540470550097496 29.097292738622105 20.2018877587319 40-44 21.17694151402503 29.39126802393257 28.837273276057495 20.594517185984902 45-49 21.145190868410122 29.14808661374127 29.237427606366722 20.469294911481885 50-54 21.29758741711565 29.169688020001765 28.75404907063139 20.778675492251196 55-59 21.482075494247866 29.267353680962728 28.864768893840107 20.385801930949306 60-64 21.40001829930492 29.40535683742557 28.73116263869707 20.46346222457244 65-69 21.360606239963058 29.45201103323494 28.79420320076701 20.393179526034995 70-74 21.3505517804454 29.611299610815657 28.461321878751527 20.576826729987417 75-79 21.727531581893487 29.15169869315019 28.740350861381366 20.38041886357496 80-84 21.69820157729424 29.451337235415988 28.497529647754344 20.352931539535433 85-89 21.561804505500838 29.495317730603777 28.525305659847746 20.417572104047643 90-94 21.598924236137854 29.381349504823916 28.577801115450107 20.441925143588122 95-99 21.48799501335848 29.369240811270124 28.642179068258578 20.500585107112826 100-104 21.69977319106643 29.471713573838365 28.52974098302167 20.298772252073526 105-109 21.652875292708142 29.361160192555207 28.67536162907444 20.31060288566221 110-114 21.81682370742646 29.410233991581208 28.443260558856874 20.329681742135453 115-119 21.948567357811406 29.392323191475857 28.36052379351394 20.298585657198792 120-124 21.955488828118323 29.3582565797982 28.506110106541822 20.18014448554165 125-129 22.236091958572903 29.50631163364091 27.999699002770313 20.257897405015875 130-134 22.311406312976985 29.35573681932443 28.141895711436998 20.19096115626159 135-139 22.699827853405278 29.30916328757263 27.803517655513136 20.18749120350895 140-144 22.72393638924554 29.445266853500407 27.71166819769986 20.119128559554188 145-149 22.88498434679191 29.474051032221915 27.563307147635243 20.077657473350936 150-151 23.29326222283196 29.028616505508452 27.58115686039134 20.096964411268253 >>END_MODULE >>Per base GC content warn #Base %GC 1 46.951648459315145 2 36.53666430904328 3 37.355112500881674 4 42.657271411903814 5 39.280662225705335 6 40.46010797252677 7 40.898229815398814 8 40.4673949140239 9 40.46953139923883 10-14 40.43638911382242 15-19 40.819723199661446 20-24 41.036273632759 25-29 41.243328814037504 30-34 41.58838184549723 35-39 41.362236711280396 40-44 41.77145870000993 45-49 41.61448577989201 50-54 42.07626290936685 55-59 41.86787742519717 60-64 41.863480523877364 65-69 41.75378576599805 70-74 41.92737851043282 75-79 42.10795044546845 80-84 42.05113311682967 85-89 41.97937660954848 90-94 42.04084937972598 95-99 41.988580120471305 100-104 41.99854544313996 105-109 41.96347817837036 110-114 42.146505449561914 115-119 42.247153015010205 120-124 42.13563331365997 125-129 42.49398936358878 130-134 42.50236746923858 135-139 42.88731905691423 140-144 42.84306494879973 145-149 42.96264182014284 150-151 43.390226634100216 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 34.0 1 40.5 2 51.5 3 65.0 4 87.0 5 120.0 6 150.5 7 162.5 8 185.5 9 260.0 10 324.5 11 390.0 12 484.5 13 576.5 14 738.0 15 985.0 16 1305.0 17 1696.0 18 2218.5 19 2915.0 20 3771.5 21 4756.5 22 5997.5 23 7583.0 24 9407.0 25 11376.5 26 13491.5 27 15937.0 28 18593.5 29 21440.5 30 24677.0 31 28224.5 32 31994.5 33 34115.0 34 34500.5 35 35392.5 36 36781.0 37 38566.0 38 39884.0 39 40610.5 40 40134.5 41 38185.0 42 36433.0 43 35056.5 44 33628.0 45 31983.5 46 30084.0 47 27988.0 48 25817.5 49 23375.0 50 20816.0 51 18389.0 52 16148.5 53 14118.5 54 12367.5 55 10776.0 56 9425.5 57 8440.0 58 7911.5 59 7771.0 60 7954.5 61 8492.0 62 9379.0 63 10372.5 64 10890.0 65 10815.5 66 9960.0 67 8338.5 68 6268.5 69 4309.5 70 2932.0 71 1999.0 72 1364.5 73 970.0 74 743.5 75 569.5 76 431.0 77 322.0 78 248.0 79 203.0 80 168.0 81 141.5 82 116.5 83 92.0 84 79.0 85 71.5 86 60.0 87 52.5 88 49.0 89 41.5 90 31.5 91 26.0 92 22.0 93 22.5 94 28.0 95 67.5 96 105.0 97 118.5 98 254.0 99 1144.5 100 1894.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.015477935125900268 2 5.877696883253266E-4 3 0.0015673858355342042 4 8.8165453248799E-4 5 7.836929177671021E-4 6 0.017437167420318023 7 0.006563428186299481 8 9.796161472088776E-5 9 2.938848441626633E-4 10-14 0.001234316345483186 15-19 0.0 20-24 3.9184645888355105E-5 25-29 0.0 30-34 5.485850424369715E-4 35-39 0.03524658897657542 40-44 0.003938056911779688 45-49 0.0 50-54 0.0017829013879201575 55-59 4.3103110477190617E-4 60-64 4.114387818277286E-4 65-69 0.03209222498256283 70-74 0.005662181330867312 75-79 0.0017045320961434473 80-84 0.02202177098925557 85-89 0.04807956050501171 90-94 0.07907461540270061 95-99 0.047217498295467904 100-104 0.05544627393202248 105-109 0.04980368492409934 110-114 0.013597072123259222 115-119 8.620622095438123E-4 120-124 0.013557887477370868 125-129 0.019651099913010086 130-134 0.009580645919702823 135-139 0.05043063925831302 140-144 0.035677620081347325 145-149 0.037049082687439755 150-151 0.03237631366525341 >>END_MODULE >>Sequence Length Distribution pass #Length Count 151 1020808.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 8.958361393854267 #Duplication Level Relative count 1 100.0 2 3.949572283777429 3 0.6081548760706115 4 0.28637701375349384 5 0.17594750106995102 6 0.10673091656495527 7 0.08665282334976566 8 0.060234279645568815 9 0.042798040800798895 10++ 0.35770708175482535 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 1847 0.1809351023894797 No Hit TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 1477 0.14468930494275123 No Hit GATCTGGTTTTATTACATTCTGAATTGGACGTTGAAAATGAGCTTATCTC 1070 0.1048189277513499 No Hit >>END_MODULE >>Kmer Content fail #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position GGGGG 1049670 15.031044 32.73486 145-147 GATCG 425950 3.5611732 6.3403797 1 GCCCC 189710 3.4395192 4.3161464 9 GGGGC 214485 3.258 4.450054 140-144 GGCCC 187995 3.213187 3.9818816 4 CCCTG 245040 3.1514792 4.498684 1 GGGCC 192720 3.1052651 3.3652709 60-64 CCAGG 255110 3.0067134 3.6802917 8 CCAGC 206310 2.5793045 10.814294 4 TCCAG 246485 2.1859627 9.059679 3 CAGCC 147015 1.8379933 6.964515 5 GATCC 194440 1.7243994 20.646122 1 GATCT 250315 1.5747408 18.297808 1 ATCTG 226795 1.4267756 9.389806 2 ATCCA 207305 1.3447906 9.172219 2 TCTGG 152780 1.3140023 6.0680146 3 GATCA 213215 1.3039017 17.872437 1 ATCAG 197020 1.2048622 6.264903 2 >>END_MODULE