FastQCFastQC Report
Mon 15 Feb 2021
1hA_S3_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename1hA_S3_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences125043466
Sequences flagged as poor quality0
Sequence length35-101
%GC29

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2303869618.424550068053936No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)