PeakID (cmd=annotatePeaks.pl CTCF-S2-jox2017_R1_peaks.narrowPeak dm3.fa -gid -gtf Drosophila_melanogaster.BDGP5.78.chr.gtf -cpu 6) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type CTCF-S2-jox2017_R1_peak_448 chr2R 17422949 17423292 + 3689 NA TTS (FBgn0050286) protein_coding-TTS (FBgn0050286) 1180 FBgn0050286 FBgn0050286 FBtr0300952 CG30286 protein_coding CTCF-S2-jox2017_R1_peak_527 chr3L 2409288 2409641 + 3627 NA TTS (FBgn0035338) protein_coding-TTS (FBgn0035338) -8491 FBgn0261551 FBgn0261551 FBtr0302675 CG42669 protein_coding CTCF-S2-jox2017_R1_peak_971 chr3R 12795242 12795639 + 3446 NA intron (FBgn0000015, intron 1 of 6) protein_coding-intron (FBgn0000015, intron 1 of 6) -5486 FBgn0038458 FBgn0038458 FBtr0083366 VhaM9.7-d protein_coding CTCF-S2-jox2017_R1_peak_436 chr2R 16771915 16772384 + 3371 NA exon (FBgn0015524, exon 6 of 6) protein_coding-exon (FBgn0015524, exon 6 of 6) 4714 FBgn0034558 FBgn0034558 FBtr0304717 CG9236 protein_coding CTCF-S2-jox2017_R1_peak_875 chr3R 3635840 3636290 + 3190 NA promoter-TSS (FBgn0051472) protein_coding-promoter-TSS (FBgn0051472) -189 FBgn0051472 FBgn0051472 FBtr0081747 CG31472 protein_coding CTCF-S2-jox2017_R1_peak_224 chr2L 20120737 20121245 + 2992 NA Intergenic Intergenic 13932 FBgn0032853 FBgn0032853 FBtr0081378 CG10651 protein_coding CTCF-S2-jox2017_R1_peak_1523 chrX 17425806 17426225 + 2570 NA promoter-TSS (FBgn0263706) protein_coding-promoter-TSS (FBgn0263706) 37246 FBgn0030844 FBgn0030844 FBtr0100574 ppk23 protein_coding CTCF-S2-jox2017_R1_peak_470 chr2R 19539794 19540163 + 2301 NA intron (FBgn0004795, intron 9 of 11) protein_coding-intron (FBgn0004795, intron 9 of 11) -5116 FBgn0034886 FBgn0034886 FBtr0072078 Pde8 protein_coding CTCF-S2-jox2017_R1_peak_109 chr2L 9612746 9613307 + 2246 NA promoter-TSS (FBgn0040070) protein_coding-promoter-TSS (FBgn0040070) -353 FBgn0040070 FBgn0040070 FBtr0079840 Trx-2 protein_coding CTCF-S2-jox2017_R1_peak_723 chr3L 16704715 16704999 + 2170 NA promoter-TSS (FBgn0063485) protein_coding-promoter-TSS (FBgn0063485) -80 FBgn0264605 FBgn0264605 FBtr0333628 CG43954 protein_coding CTCF-S2-jox2017_R1_peak_378 chr2R 11226963 11227438 + 2146 NA TTS (FBgn0034012) protein_coding-TTS (FBgn0034012) 8094 FBgn0034012 FBgn0034012 FBtr0114456 Hr51 protein_coding CTCF-S2-jox2017_R1_peak_390 chr2R 12022998 12023354 + 2127 NA intron (FBgn0086676, intron 4 of 7) protein_coding-intron (FBgn0086676, intron 3 of 7) -3005 FBgn0001124 FBgn0001124 FBtr0087232 Got1 protein_coding CTCF-S2-jox2017_R1_peak_419 chr2R 15356346 15356810 + 2078 NA exon (FBgn0260934, exon 2 of 15) protein_coding-exon (FBgn0260934, exon 2 of 15) 12878 FBgn0002716 FBgn0002716 FBtr0086461 mei-W68 protein_coding CTCF-S2-jox2017_R1_peak_935 chr3R 10216957 10217353 + 2048 NA TTS (FBgn0086901) protein_coding-TTS (FBgn0086901) 5010 FBgn0262327 FBgn0262327 FBtr0304502 mir-2281 pre_miRNA CTCF-S2-jox2017_R1_peak_213 chr2L 19415170 19415490 + 1925 NA promoter-TSS (FBgn0041789) protein_coding-promoter-TSS (FBgn0041789) -872 FBgn0041789 FBgn0041789 FBtr0081214 Pax protein_coding CTCF-S2-jox2017_R1_peak_201 chr2L 18665935 18666264 + 1823 NA TTS (FBgn0263079) protein_coding-TTS (FBgn0263079) 867 FBgn0086200 FBgn0086200 FBtr0306300 CG42490 protein_coding CTCF-S2-jox2017_R1_peak_508 chr3L 505757 506428 + 1820 NA intron (FBgn0001316, intron 3 of 18) protein_coding-intron (FBgn0001316, intron 4 of 18) 5127 FBgn0085297 FBgn0085297 FBtr0112463 CG34268 protein_coding CTCF-S2-jox2017_R1_peak_1538 chrX 18411384 18411849 + 1812 NA exon (FBgn0027087, exon 2 of 6) protein_coding-exon (FBgn0027087, exon 2 of 6) 2155 FBgn0027087 FBgn0027087 FBtr0333806 Aats-his protein_coding CTCF-S2-jox2017_R1_peak_795 chr3L 21597410 21597753 + 1804 NA intron (FBgn0261953, intron 1 of 7) protein_coding-intron (FBgn0261953, intron 1 of 7) 9884 FBgn0264568 FBgn0264568 FBtr0333469 CR43940 ncRNA CTCF-S2-jox2017_R1_peak_654 chr3L 11041012 11041369 + 1790 NA intron (FBgn0263776, intron 1 of 6) protein_coding-intron (FBgn0263776, intron 1 of 5) 3281 FBgn0263776 FBgn0263776 FBtr0310568 CG43693 protein_coding CTCF-S2-jox2017_R1_peak_33 chr2L 3472252 3472651 + 1787 NA promoter-TSS (FBgn0051956) protein_coding-promoter-TSS (FBgn0051956) -152 FBgn0051956 FBgn0051956 FBtr0114524 pgant4 protein_coding CTCF-S2-jox2017_R1_peak_150 chr2L 12540155 12540601 + 1773 NA exon (FBgn0259176, exon 1 of 5) protein_coding-exon (FBgn0259176, exon 1 of 5) -2798 FBgn0261709 FBgn0261709 FBtr0303215 CR42746 ncRNA CTCF-S2-jox2017_R1_peak_1125 chr3R 26887075 26887456 + 1714 NA promoter-TSS (FBgn0002413) protein_coding-promoter-TSS (FBgn0002413) -662 FBgn0002413 FBgn0002413 FBtr0085744 dco protein_coding CTCF-S2-jox2017_R1_peak_1099 chr3R 24811756 24812067 + 1706 NA Intergenic Intergenic -15835 FBgn0039617 FBgn0039617 FBtr0085347 CG14521 protein_coding CTCF-S2-jox2017_R1_peak_834 chr3R 185279 185571 + 1704 NA promoter-TSS (FBgn0037238) protein_coding-promoter-TSS (FBgn0037238) -180 FBgn0037238 FBgn0037238 FBtr0332450 CG1090 protein_coding CTCF-S2-jox2017_R1_peak_706 chr3L 15171782 15172082 + 1693 NA Intergenic Intergenic -15204 FBgn0036489 FBgn0036489 FBtr0075645 CG7011 protein_coding CTCF-S2-jox2017_R1_peak_848 chr3R 1124701 1125111 + 1675 NA promoter-TSS (FBgn0037310) protein_coding-promoter-TSS (FBgn0037310) -961 FBgn0037310 FBgn0037310 FBtr0078784 Tim17b1 protein_coding CTCF-S2-jox2017_R1_peak_897 chr3R 5926230 5926633 + 1665 NA promoter-TSS (FBgn0262459) pre_miRNA-promoter-TSS (FBgn0262459) -243 FBgn0262459 FBgn0262459 FBtr0304500 mir-34 pre_miRNA CTCF-S2-jox2017_R1_peak_970 chr3R 12783464 12783806 + 1647 NA intron (FBgn0000015, intron 1 of 6) protein_coding-intron (FBgn0000015, intron 1 of 6) -17291 FBgn0038458 FBgn0038458 FBtr0083366 VhaM9.7-d protein_coding CTCF-S2-jox2017_R1_peak_534 chr3L 2851812 2852197 + 1647 NA intron (FBgn0263392, intron 3 of 9) protein_coding-intron (FBgn0263392, intron 3 of 9) 27154 FBgn0263392 FBgn0263392 FBtr0309119 CG43444 protein_coding CTCF-S2-jox2017_R1_peak_1287 chrUextra 27346671 27347391 + 1629 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_612 chr3L 8644917 8645294 + 1629 NA TTS (FBgn0035922) protein_coding-TTS (FBgn0035922) 2534 FBgn0035922 FBgn0035922 FBtr0273328 Pex7 protein_coding CTCF-S2-jox2017_R1_peak_614 chr3L 8741952 8742284 + 1605 NA TTS (FBgn0040828) protein_coding-TTS (FBgn0040828) 708 FBgn0040828 FBgn0040828 FBtr0076592 CG13306 protein_coding CTCF-S2-jox2017_R1_peak_843 chr3R 796387 796921 + 1577 NA Intergenic Intergenic 5487 FBgn0037290 FBgn0037290 FBtr0078841 CG1124 protein_coding CTCF-S2-jox2017_R1_peak_689 chr3L 14104542 14104937 + 1570 NA TTS (FBgn0042630) protein_coding-TTS (FBgn0042630) -3521 FBgn0036411 FBgn0036411 FBtr0330178 Sox21a protein_coding CTCF-S2-jox2017_R1_peak_24 chr2L 2130128 2130473 + 1567 NA promoter-TSS (FBgn0004507) protein_coding-promoter-TSS (FBgn0004507) -515 FBgn0004507 FBgn0004507 FBtr0100485 GlyP protein_coding CTCF-S2-jox2017_R1_peak_1098 chr3R 24497935 24498340 + 1556 NA TTS (FBgn0039593) protein_coding-TTS (FBgn0039593) 1679 FBgn0039593 FBgn0039593 FBtr0085307 CG9989 protein_coding CTCF-S2-jox2017_R1_peak_1156 chr4 445244 445615 + 1545 NA Intergenic Intergenic -1264 FBgn0263385 FBgn0263385 FBtr0309072 CR43437 ncRNA CTCF-S2-jox2017_R1_peak_260 chr2R 2038495 2039050 + 1495 NA intron (FBgn0000546, intron 4 of 7) protein_coding-intron (FBgn0000546, intron 3 of 6) 1409 FBgn0011938 FBgn0011938 FBtr0086016 tRNA:N5:42Ah tRNA CTCF-S2-jox2017_R1_peak_359 chr2R 9829566 9829927 + 1454 NA promoter-TSS (FBgn0013733) protein_coding-promoter-TSS (FBgn0013733) 1136 FBgn0033885 FBgn0033885 FBtr0087615 DJ-1alpha protein_coding CTCF-S2-jox2017_R1_peak_83 chr2L 7534998 7535285 + 1450 NA intron (FBgn0085403, intron 2 of 4) protein_coding-intron (FBgn0085403, intron 3 of 5) -19881 FBgn0085403 FBgn0085403 FBtr0112606 Rapgap1 protein_coding CTCF-S2-jox2017_R1_peak_286 chr2R 4510735 4511048 + 1440 NA exon (FBgn0033313, exon 10 of 10) protein_coding-exon (FBgn0033313, exon 10 of 10) -2065 FBgn0022027 FBgn0022027 FBtr0088694 Vps25 protein_coding CTCF-S2-jox2017_R1_peak_650 chr3L 10892225 10892691 + 1434 NA promoter-TSS (FBgn0036111) protein_coding-promoter-TSS (FBgn0036111) -235 FBgn0036111 FBgn0036111 FBtr0076251 Aps protein_coding CTCF-S2-jox2017_R1_peak_844 chr3R 952581 952941 + 1423 NA Intergenic Intergenic -1049 FBgn0037293 FBgn0037293 FBtr0078842 CG12007 protein_coding CTCF-S2-jox2017_R1_peak_108 chr2L 9576670 9577029 + 1419 NA promoter-TSS (FBgn0028479) protein_coding-promoter-TSS (FBgn0028479) -95 FBgn0028479 FBgn0028479 FBtr0079859 Mtpalpha protein_coding CTCF-S2-jox2017_R1_peak_1207 chrUextra 3809267 3809833 + 1417 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1381 chrX 3374920 3375294 + 1385 NA exon (FBgn0029663, exon 2 of 7) protein_coding-exon (FBgn0029663, exon 2 of 7) 1248 FBgn0029663 FBgn0029663 FBtr0114487 CG10804 protein_coding CTCF-S2-jox2017_R1_peak_988 chr3R 13846892 13847395 + 1380 NA promoter-TSS (FBgn0038564) protein_coding-promoter-TSS (FBgn0038564) -179 FBgn0038564 FBgn0038564 FBtr0083539 CG7785 protein_coding CTCF-S2-jox2017_R1_peak_399 chr2R 12687543 12687897 + 1373 NA Intergenic Intergenic -3808 FBgn0034159 FBgn0034159 FBtr0300552 CG15615 protein_coding CTCF-S2-jox2017_R1_peak_1438 chrX 9046174 9046537 + 1366 NA TTS (FBgn0030093) protein_coding-TTS (FBgn0030093) 3013 FBgn0030093 FBgn0030093 FBtr0071300 dalao protein_coding CTCF-S2-jox2017_R1_peak_425 chr2R 15884970 15885375 + 1365 NA Intergenic Intergenic 2701 FBgn0050212 FBgn0050212 FBtr0086326 tRNA:CR30212 tRNA CTCF-S2-jox2017_R1_peak_796 chr3L 21645888 21646267 + 1340 NA intron (FBgn0264711, intron 2 of 7) protein_coding-intron (FBgn0264711, intron 2 of 7) -5245 FBgn0264711 FBgn0264711 FBtr0333974 CG43980 protein_coding CTCF-S2-jox2017_R1_peak_1203 chrUextra 2684423 2684930 + 1329 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_184 chr2L 16815986 16816271 + 1297 NA promoter-TSS (FBgn0004797) protein_coding-promoter-TSS (FBgn0004797) -980 FBgn0004797 FBgn0004797 FBtr0080918 mdy protein_coding CTCF-S2-jox2017_R1_peak_193 chr2L 17784641 17784997 + 1288 NA Intergenic Intergenic -7593 FBgn0263338 FBgn0263338 FBtr0308768 CR43419 ncRNA CTCF-S2-jox2017_R1_peak_133 chr2L 11816381 11816711 + 1256 NA exon (FBgn0259225, exon 10 of 10) protein_coding-exon (FBgn0259225, exon 10 of 10) -2766 FBgn0032378 FBgn0032378 FBtr0080259 CycY protein_coding CTCF-S2-jox2017_R1_peak_294 chr2R 5196161 5196479 + 1254 NA promoter-TSS (FBgn0033402) protein_coding-promoter-TSS (FBgn0033402) -93 FBgn0033402 FBgn0033402 FBtr0088598 Myd88 protein_coding CTCF-S2-jox2017_R1_peak_1348 chrX 423826 424148 + 1240 NA promoter-TSS (FBgn0024983) protein_coding-promoter-TSS (FBgn0024983) -105 FBgn0024983 FBgn0024983 FBtr0334033 CG4293 protein_coding CTCF-S2-jox2017_R1_peak_544 chr3L 3616367 3616841 + 1238 NA TTS (FBgn0035453) protein_coding-TTS (FBgn0035453) 1222 FBgn0035453 FBgn0035453 FBtr0300062 CG10357 protein_coding CTCF-S2-jox2017_R1_peak_227 chr2L 20414825 20415192 + 1238 NA TTS (FBgn0032858) protein_coding-TTS (FBgn0032858) 1910 FBgn0032858 FBgn0032858 FBtr0081367 CG10949 protein_coding CTCF-S2-jox2017_R1_peak_916 chr3R 7438887 7439430 + 1232 NA intron (FBgn0051363, intron 1 of 4) protein_coding-intron (FBgn0051363, intron 1 of 3) -6656 FBgn0037920 FBgn0037920 FBtr0299566 CG14710 protein_coding CTCF-S2-jox2017_R1_peak_1558 chrX 20500412 20500705 + 1207 NA Intergenic Intergenic -5758 FBgn0083981 FBgn0083981 FBtr0331160 RunxA protein_coding CTCF-S2-jox2017_R1_peak_1154 chr4 427471 427817 + 1203 NA Intergenic Intergenic -11216 FBgn0262636 FBgn0262636 FBtr0307044 Lin29 protein_coding CTCF-S2-jox2017_R1_peak_463 chr2R 19001995 19002268 + 1173 NA Intergenic Intergenic -9439 FBgn0041236 FBgn0041236 FBtr0071976 Gr59d protein_coding CTCF-S2-jox2017_R1_peak_167 chr2L 14706162 14706589 + 1171 NA Intergenic Intergenic -6290 FBgn0028855 FBgn0028855 FBtr0302946 CG15282 protein_coding CTCF-S2-jox2017_R1_peak_335 chr2R 7515569 7515865 + 1166 NA intron (FBgn0033638, intron 2 of 7) protein_coding-intron (FBgn0033638, intron 2 of 7) -9189 FBgn0086712 FBgn0086712 FBtr0088090 Egm protein_coding CTCF-S2-jox2017_R1_peak_872 chr3R 3172158 3172527 + 1149 NA promoter-TSS (FBgn0051501) protein_coding-promoter-TSS (FBgn0051501) -213 FBgn0051501 FBgn0051501 FBtr0081583 nxf4 protein_coding CTCF-S2-jox2017_R1_peak_1445 chrX 9672480 9672859 + 1120 NA promoter-TSS (FBgn0030151) protein_coding-promoter-TSS (FBgn0030151) -1551 FBgn0030151 FBgn0030151 FBtr0089386 CG1354 protein_coding CTCF-S2-jox2017_R1_peak_87 chr2L 7856397 7856683 + 1107 NA promoter-TSS (FBgn0040099) protein_coding-promoter-TSS (FBgn0040099) -537 FBgn0040099 FBgn0040099 FBtr0308065 lectin-28C protein_coding CTCF-S2-jox2017_R1_peak_602 chr3L 7553728 7554019 + 1102 NA promoter-TSS (FBgn0035797) protein_coding-promoter-TSS (FBgn0035797) -736 FBgn0035797 FBgn0035797 FBtr0290223 CG14837 protein_coding CTCF-S2-jox2017_R1_peak_863 chr3R 2585247 2585582 + 1086 NA promoter-TSS (FBgn0000166) protein_coding-promoter-TSS (FBgn0000166) -215 FBgn0000166 FBgn0000166 FBtr0081668 bcd protein_coding CTCF-S2-jox2017_R1_peak_1519 chrX 16971845 16972145 + 1086 NA promoter-TSS (FBgn0030813) protein_coding-promoter-TSS (FBgn0030813) -65 FBgn0030812 FBgn0030812 FBtr0310525 CG8949 protein_coding CTCF-S2-jox2017_R1_peak_529 chr3L 2531111 2531656 + 1084 NA intron (FBgn0010905, intron 3 of 16) protein_coding-intron (FBgn0010905, intron 3 of 15) -4410 FBgn0260480 FBgn0260480 FBtr0072962 CG32295 protein_coding CTCF-S2-jox2017_R1_peak_514 chr3L 774719 775094 + 1083 NA Intergenic Intergenic 4543 FBgn0052481 FBgn0052481 FBtr0072580 tRNA:CR32481 tRNA CTCF-S2-jox2017_R1_peak_1112 chr3R 25848271 25848577 + 1075 NA promoter-TSS (FBgn0026597) protein_coding-promoter-TSS (FBgn0026597) -104 FBgn0039739 FBgn0039739 FBtr0085601 RpS28a protein_coding CTCF-S2-jox2017_R1_peak_1225 chrUextra 9036992 9037521 + 1075 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_27 chr2L 2855939 2856218 + 1075 NA promoter-TSS (FBgn0015521) protein_coding-promoter-TSS (FBgn0015521) 8 FBgn0015521 FBgn0015521 FBtr0273293 RpS21 protein_coding CTCF-S2-jox2017_R1_peak_341 chr2R 8088559 8088882 + 1060 NA promoter-TSS (FBgn0033699) protein_coding-promoter-TSS (FBgn0033699) -387 FBgn0033699 FBgn0033699 FBtr0088007 RpS11 protein_coding CTCF-S2-jox2017_R1_peak_279 chr2R 4139034 4139423 + 1052 NA Intergenic Intergenic -2533 FBgn0033277 FBgn0033277 FBtr0088794 CG14760 protein_coding CTCF-S2-jox2017_R1_peak_784 chr3L 20704505 20704941 + 1033 NA Intergenic Intergenic -2477 FBgn0085289 FBgn0085289 FBtr0333482 CG34260 protein_coding CTCF-S2-jox2017_R1_peak_394 chr2R 12471380 12471678 + 1026 NA intron (FBgn0016131, intron 3 of 6) protein_coding-intron (FBgn0016131, intron 3 of 6) -2070 FBgn0003274 FBgn0003274 FBtr0087105 RpLP2 protein_coding CTCF-S2-jox2017_R1_peak_705 chr3L 15154725 15155007 + 1020 NA promoter-TSS (FBgn0036488) protein_coding-promoter-TSS (FBgn0036488) -51 FBgn0036488 FBgn0036488 FBtr0075643 CG6878 protein_coding CTCF-S2-jox2017_R1_peak_300 chr2R 5830330 5830659 + 1010 NA exon (FBgn0011656, exon 1 of 11) protein_coding-exon (FBgn0011656, exon 1 of 11) 15856 FBgn0011656 FBgn0011656 FBtr0088446 Mef2 protein_coding CTCF-S2-jox2017_R1_peak_656 chr3L 11116197 11116485 + 1005 NA promoter-TSS (FBgn0036136) protein_coding-promoter-TSS (FBgn0036136) -25 FBgn0036136 FBgn0036136 FBtr0076223 Ufd1-like protein_coding CTCF-S2-jox2017_R1_peak_581 chr3L 6117908 6118316 + 994 NA intron (FBgn0002440, intron 4 of 5) protein_coding-intron (FBgn0002440, intron 4 of 5) 3795 FBgn0002440 FBgn0002440 FBtr0077062 l(3)mbn protein_coding CTCF-S2-jox2017_R1_peak_1563 chrX 20931621 20932027 + 969 NA exon (FBgn0031150, exon 2 of 7) protein_coding-exon (FBgn0031150, exon 2 of 7) 3791 FBgn0052512 FBgn0052512 FBtr0332847 CG32512 protein_coding CTCF-S2-jox2017_R1_peak_974 chr3R 13228212 13228497 + 969 NA promoter-TSS (FBgn0038504) protein_coding-promoter-TSS (FBgn0038504) 656 FBgn0085308 FBgn0085308 FBtr0333932 CG34279 protein_coding CTCF-S2-jox2017_R1_peak_512 chr3L 712055 712392 + 961 NA promoter-TSS (FBgn0035159) protein_coding-promoter-TSS (FBgn0035159) -373 FBgn0035159 FBgn0035159 FBtr0072602 CG13896 protein_coding CTCF-S2-jox2017_R1_peak_69 chr2L 6455980 6456325 + 958 NA promoter-TSS (FBgn0031815) protein_coding-promoter-TSS (FBgn0031815) 117 FBgn0031815 FBgn0031815 FBtr0079258 frj protein_coding CTCF-S2-jox2017_R1_peak_342 chr2R 8161626 8162067 + 955 NA exon (FBgn0000253, exon 5 of 5) protein_coding-exon (FBgn0000253, exon 5 of 5) 9781 FBgn0000253 FBgn0000253 FBtr0088002 Cam protein_coding CTCF-S2-jox2017_R1_peak_953 chr3R 12086269 12086935 + 951 NA TTS (FBgn0040071) protein_coding-TTS (FBgn0040071) 3235 FBgn0040237 FBgn0040237 FBtr0083276 bor protein_coding CTCF-S2-jox2017_R1_peak_1157 chr4 507176 507561 + 931 NA promoter-TSS (FBgn0039908) protein_coding-promoter-TSS (FBgn0039908) -2939 FBgn0039908 FBgn0039908 FBtr0332904 Asator protein_coding CTCF-S2-jox2017_R1_peak_965 chr3R 12694922 12695256 + 922 NA intron (FBgn0263610, intron 4 of 7) ncRNA-intron (FBgn0263610, intron 3 of 6) 13052 FBgn0262462 FBgn0262462 FBtr0304522 mir-iab-4 pre_miRNA CTCF-S2-jox2017_R1_peak_998 chr3R 15316738 15317073 + 917 NA promoter-TSS (FBgn0038709) protein_coding-promoter-TSS (FBgn0038709) -68 FBgn0038709 FBgn0038709 FBtr0083768 CG15025 protein_coding CTCF-S2-jox2017_R1_peak_632 chr3L 9744575 9745075 + 908 NA promoter-TSS (FBgn0259163) protein_coding-promoter-TSS (FBgn0259163) -149 FBgn0259163 FBgn0259163 FBtr0331539 CG42268 protein_coding CTCF-S2-jox2017_R1_peak_60 chr2L 5771230 5771494 + 906 NA exon (FBgn0051912, exon 2 of 2) ncRNA-exon (FBgn0051912, exon 2 of 2) 1610 FBgn0051912 FBgn0051912 FBtr0332036 CR31912 ncRNA CTCF-S2-jox2017_R1_peak_329 chr2R 7298290 7298622 + 906 NA promoter-TSS (FBgn0054054) protein_coding-promoter-TSS (FBgn0054054) -513 FBgn0054054 FBgn0054054 FBtr0100109 CG34054 protein_coding CTCF-S2-jox2017_R1_peak_1387 chrX 3673684 3673982 + 905 NA promoter-TSS (FBgn0086899) protein_coding-promoter-TSS (FBgn0086899) 2344 FBgn0263532 FBgn0263532 FBtr0309622 mir-4962 pre_miRNA CTCF-S2-jox2017_R1_peak_1215 chrUextra 7039305 7039800 + 903 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_51 chr2L 4660957 4661267 + 902 NA Intergenic Intergenic 9709 FBgn0031619 FBgn0031619 FBtr0077376 CG3355 protein_coding CTCF-S2-jox2017_R1_peak_324 chr2R 7021856 7022233 + 886 NA Intergenic Intergenic -1389 FBgn0033578 FBgn0033578 FBtr0088202 BBS4 protein_coding CTCF-S2-jox2017_R1_peak_967 chr3R 12744799 12745144 + 877 NA intron (FBgn0263610, intron 1 of 7) ncRNA-intron (FBgn0263610, intron 1 of 7) 3984 FBgn0263610 FBgn0263610 FBtr0306339 msa ncRNA CTCF-S2-jox2017_R1_peak_1417 chrX 6003927 6004275 + 877 NA intron (FBgn0264386, intron 24 of 25) protein_coding-intron (FBgn0264386, intron 24 of 25) 16199 FBgn0029843 FBgn0029843 FBtr0070873 Nep1 protein_coding CTCF-S2-jox2017_R1_peak_37 chr2L 3657282 3657741 + 873 NA promoter-TSS (FBgn0000721) protein_coding-promoter-TSS (FBgn0000721) -5234 FBgn0085369 FBgn0085369 FBtr0302391 CG34340 protein_coding CTCF-S2-jox2017_R1_peak_1109 chr3R 25542716 25543216 + 866 NA promoter-TSS (FBgn0039685) protein_coding-promoter-TSS (FBgn0039685) -348 FBgn0039685 FBgn0039685 FBtr0085462 Obp99b protein_coding CTCF-S2-jox2017_R1_peak_605 chr3L 7830193 7830502 + 865 NA intron (FBgn0016694, intron 1 of 5) protein_coding-intron (FBgn0016694, intron 1 of 4) -27422 FBgn0052369 FBgn0052369 FBtr0076783 CG32369 protein_coding CTCF-S2-jox2017_R1_peak_85 chr2L 7641641 7641930 + 864 NA TTS (FBgn0264087) protein_coding-TTS (FBgn0264087) 32898 FBgn0264087 FBgn0264087 FBtr0330703 Slob protein_coding CTCF-S2-jox2017_R1_peak_770 chr3L 20090391 20090688 + 862 NA TTS (FBgn0036935) protein_coding-TTS (FBgn0036935) 6388 FBgn0036935 FBgn0036935 FBtr0074870 CG14186 protein_coding CTCF-S2-jox2017_R1_peak_13 chr2L 740117 740411 + 859 NA intron (FBgn0026438, intron 4 of 7) protein_coding-intron (FBgn0026438, intron 4 of 7) 4131 FBgn0026438 FBgn0026438 FBtr0301316 Eaat2 protein_coding CTCF-S2-jox2017_R1_peak_1054 chr3R 20382656 20382949 + 853 NA promoter-TSS (FBgn0004190) snRNA-promoter-TSS (FBgn0004190) -135 FBgn0004190 FBgn0004190 FBtr0084652 snRNA:U6:96Ac snRNA CTCF-S2-jox2017_R1_peak_1022 chr3R 17010509 17010778 + 853 NA intron (FBgn0264357, intron 1 of 8) protein_coding-intron (FBgn0264357, intron 6 of 12) -16716 FBgn0260004 FBgn0260004 FBtr0084027 Snmp1 protein_coding CTCF-S2-jox2017_R1_peak_1483 chrX 13457468 13457878 + 845 NA promoter-TSS (FBgn0086674) protein_coding-promoter-TSS (FBgn0086674) -183 FBgn0086674 FBgn0086674 FBtr0330399 Tango13 protein_coding CTCF-S2-jox2017_R1_peak_934 chr3R 9924278 9924670 + 844 NA promoter-TSS (FBgn0038200) protein_coding-promoter-TSS (FBgn0038200) -672 FBgn0038200 FBgn0038200 FBtr0082917 CG9920 protein_coding CTCF-S2-jox2017_R1_peak_1015 chr3R 16773717 16774076 + 834 NA promoter-TSS (FBgn0002921) protein_coding-promoter-TSS (FBgn0002921) -540 FBgn0002921 FBgn0002921 FBtr0089516 Atpalpha protein_coding CTCF-S2-jox2017_R1_peak_118 chr2L 9887830 9888187 + 824 NA promoter-TSS (FBgn0029174) protein_coding-promoter-TSS (FBgn0029174) -90 FBgn0029174 FBgn0029174 FBtr0079872 FKBP59 protein_coding CTCF-S2-jox2017_R1_peak_266 chr2R 2810633 2810929 + 821 NA promoter-TSS (FBgn0033117) protein_coding-promoter-TSS (FBgn0033117) -170 FBgn0033117 FBgn0033117 FBtr0307183 CG3358 protein_coding CTCF-S2-jox2017_R1_peak_205 chr2L 18839582 18839920 + 816 NA promoter-TSS (FBgn0032717) protein_coding-promoter-TSS (FBgn0032717) -72 FBgn0032717 FBgn0032717 FBtr0081120 CG10600 protein_coding CTCF-S2-jox2017_R1_peak_393 chr2R 12439372 12439656 + 811 NA promoter-TSS (FBgn0034135) protein_coding-promoter-TSS (FBgn0034135) -251 FBgn0034135 FBgn0034135 FBtr0087097 Syn2 protein_coding CTCF-S2-jox2017_R1_peak_1046 chr3R 19505578 19505898 + 807 NA promoter-TSS (FBgn0040227) protein_coding-promoter-TSS (FBgn0040227) -29 FBgn0040227 FBgn0040227 FBtr0089622 eIF-3p66 protein_coding CTCF-S2-jox2017_R1_peak_365 chr2R 10334352 10334698 + 806 NA intron (FBgn0261613, intron 2 of 5) protein_coding-intron (FBgn0261613, intron 2 of 5) 11121 FBgn0261613 FBgn0261613 FBtr0302926 Oaz protein_coding CTCF-S2-jox2017_R1_peak_1362 chrX 1846902 1847500 + 790 NA intron (FBgn0264562, intron 2 of 11) protein_coding-intron (FBgn0264562, intron 2 of 11) 11228 FBgn0264562 FBgn0264562 FBtr0333339 Hr4 protein_coding CTCF-S2-jox2017_R1_peak_481 chr2R 21070457 21070868 + 787 NA TTS (FBgn0035094) protein_coding-TTS (FBgn0035094) 5669 FBgn0035094 FBgn0035094 FBtr0333170 CG9380 protein_coding CTCF-S2-jox2017_R1_peak_951 chr3R 12031120 12031506 + 783 NA promoter-TSS (FBgn0010438) protein_coding-promoter-TSS (FBgn0010438) -340 FBgn0010438 FBgn0010438 FBtr0083277 mtSSB protein_coding CTCF-S2-jox2017_R1_peak_956 chr3R 12323094 12323431 + 775 NA TTS (FBgn0038440) protein_coding-TTS (FBgn0038440) 1419 FBgn0038440 FBgn0038440 FBtr0089695 Gr89a protein_coding CTCF-S2-jox2017_R1_peak_920 chr3R 8176247 8176531 + 764 NA promoter-TSS (FBgn0038013) protein_coding-promoter-TSS (FBgn0038013) -58 FBgn0038013 FBgn0038013 FBtr0082615 CG10038 protein_coding CTCF-S2-jox2017_R1_peak_76 chr2L 6797459 6797853 + 764 NA promoter-TSS (FBgn0015777) protein_coding-promoter-TSS (FBgn0015777) 538 FBgn0015777 FBgn0015777 FBtr0100381 nrv2 protein_coding CTCF-S2-jox2017_R1_peak_1101 chr3R 25077269 25077583 + 763 NA TTS (FBgn0003525) protein_coding-TTS (FBgn0003525) -2882 FBgn0263236 FBgn0263236 FBtr0085400 SP1029 protein_coding CTCF-S2-jox2017_R1_peak_1394 chrX 4423937 4424214 + 761 NA promoter-TSS (FBgn0029708) protein_coding-promoter-TSS (FBgn0029708) -189 FBgn0029708 FBgn0029708 FBtr0070674 CG3556 protein_coding CTCF-S2-jox2017_R1_peak_159 chr2L 14094621 14094964 + 757 NA TTS (FBgn0028875) protein_coding-TTS (FBgn0028875) -9691 FBgn0028904 FBgn0028904 FBtr0080596 CG16879 protein_coding CTCF-S2-jox2017_R1_peak_933 chr3R 9914537 9914880 + 752 NA promoter-TSS (FBgn0038198) protein_coding-promoter-TSS (FBgn0038198) -1788 FBgn0038198 FBgn0038198 FBtr0082889 Npc2b protein_coding CTCF-S2-jox2017_R1_peak_737 chr3L 17590087 17590343 + 751 NA intron (FBgn0000567, intron 5 of 7) protein_coding-intron (FBgn0000567, intron 5 of 7) 22210 FBgn0000567 FBgn0000567 FBtr0075204 Eip74EF protein_coding CTCF-S2-jox2017_R1_peak_71 chr2L 6557353 6557647 + 748 NA promoter-TSS (FBgn0031830) protein_coding-promoter-TSS (FBgn0031830) -141 FBgn0031829 FBgn0031829 FBtr0079333 osm-6 protein_coding CTCF-S2-jox2017_R1_peak_729 chr3L 16948297 16948650 + 745 NA promoter-TSS (FBgn0010352) protein_coding-promoter-TSS (FBgn0010352) 438 FBgn0010352 FBgn0010352 FBtr0075269 Nc73EF protein_coding CTCF-S2-jox2017_R1_peak_504 chr3L 246837 247173 + 742 NA promoter-TSS (FBgn0052476) protein_coding-promoter-TSS (FBgn0052476) -93 FBgn0000541 FBgn0000541 FBtr0301349 E(bx) protein_coding CTCF-S2-jox2017_R1_peak_1117 chr3R 26250849 26251129 + 740 NA promoter-TSS (FBgn0039766) protein_coding-promoter-TSS (FBgn0039766) -105 FBgn0039766 FBgn0039766 FBtr0085628 CG15536 protein_coding CTCF-S2-jox2017_R1_peak_960 chr3R 12574328 12574678 + 736 NA intron (FBgn0020556, intron 1 of 2) ncRNA-intron (FBgn0020556, intron 2 of 2) -2395 FBgn0020556 FBgn0020556 FBtr0083344 bxd ncRNA CTCF-S2-jox2017_R1_peak_1489 chrX 14606494 14606820 + 736 NA intron (FBgn0015774, intron 2 of 7) protein_coding-intron (FBgn0015774, intron 3 of 8) 6318 FBgn0052595 FBgn0052595 FBtr0073941 CG32595 protein_coding CTCF-S2-jox2017_R1_peak_1434 chrX 7604887 7605165 + 730 NA Intergenic Intergenic 3218 FBgn0262979 FBgn0262979 FBtr0306815 CG43287 protein_coding CTCF-S2-jox2017_R1_peak_1029 chr3R 17345917 17346323 + 719 NA promoter-TSS (FBgn0038890) protein_coding-promoter-TSS (FBgn0038890) -547 FBgn0038890 FBgn0038890 FBtr0301212 CG7956 protein_coding CTCF-S2-jox2017_R1_peak_274 chr2R 3901744 3902045 + 718 NA promoter-TSS (FBgn0033250) protein_coding-promoter-TSS (FBgn0033250) -635 FBgn0033250 FBgn0033250 FBtr0304750 CG14762 protein_coding CTCF-S2-jox2017_R1_peak_1220 chrUextra 8133327 8133843 + 715 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_961 chr3R 12624264 12624782 + 715 NA Intergenic Intergenic 10490 FBgn0015230 FBgn0015230 FBtr0083340 Glut3 protein_coding CTCF-S2-jox2017_R1_peak_1361 chrX 1666691 1666998 + 712 NA promoter-TSS (FBgn0026086) protein_coding-promoter-TSS (FBgn0026086) -908 FBgn0026086 FBgn0026086 FBtr0309961 Adar protein_coding CTCF-S2-jox2017_R1_peak_7 chr2L 414579 414934 + 698 NA promoter-TSS (FBgn0263933) protein_coding-promoter-TSS (FBgn0263933) -311 FBgn0263933 FBgn0263933 FBtr0078055 ebi protein_coding CTCF-S2-jox2017_R1_peak_564 chr3L 4805820 4806152 + 693 NA promoter-TSS (FBgn0035575) protein_coding-promoter-TSS (FBgn0035575) -712 FBgn0035575 FBgn0035575 FBtr0073362 CG7509 protein_coding CTCF-S2-jox2017_R1_peak_977 chr3R 13442912 13443258 + 688 NA promoter-TSS (FBgn0012002) tRNA-promoter-TSS (FBgn0012002) -398 FBgn0012002 FBgn0012002 FBtr0083466 tRNA:V3b:90BC tRNA CTCF-S2-jox2017_R1_peak_79 chr2L 7258142 7258411 + 679 NA TTS (FBgn0051909) protein_coding-TTS (FBgn0051909) 764 FBgn0051909 FBgn0051909 FBtr0300459 CG31909 protein_coding CTCF-S2-jox2017_R1_peak_423 chr2R 15614738 15615167 + 675 NA promoter-TSS (FBgn0011849) tRNA-promoter-TSS (FBgn0011849) 84 FBgn0011849 FBgn0011849 FBtr0086447 tRNA:E4:56Fb tRNA CTCF-S2-jox2017_R1_peak_1528 chrX 17645575 17646138 + 675 NA TTS (FBgn0261570) protein_coding-TTS (FBgn0261570) -17560 FBgn0024184 FBgn0024184 FBtr0074460 unc-4 protein_coding CTCF-S2-jox2017_R1_peak_1521 chrX 17069794 17070170 + 671 NA intron (FBgn0000163, intron 1 of 6) protein_coding-intron (FBgn0000163, intron 1 of 6) -10992 FBgn0000163 FBgn0000163 FBtr0111000 baz protein_coding CTCF-S2-jox2017_R1_peak_999 chr3R 15474375 15474642 + 667 NA promoter-TSS (FBgn0038723) protein_coding-promoter-TSS (FBgn0038723) -284 FBgn0038723 FBgn0038723 FBtr0083803 CG6195 protein_coding CTCF-S2-jox2017_R1_peak_1087 chr3R 23373048 23373443 + 661 NA TTS (FBgn0046885) protein_coding-TTS (FBgn0046885) 1471 FBgn0046885 FBgn0046885 FBtr0085188 Gr98d protein_coding CTCF-S2-jox2017_R1_peak_446 chr2R 17200385 17200694 + 660 NA promoter-TSS (FBgn0034618) protein_coding-promoter-TSS (FBgn0034618) 630 FBgn0034618 FBgn0034618 FBtr0071601 CG9485 protein_coding CTCF-S2-jox2017_R1_peak_479 chr2R 20701339 20701587 + 657 NA promoter-TSS (FBgn0000157) protein_coding-promoter-TSS (FBgn0000157) -890 FBgn0000157 FBgn0000157 FBtr0300076 Dll protein_coding CTCF-S2-jox2017_R1_peak_1409 chrX 5418566 5418878 + 656 NA promoter-TSS (FBgn0086667) snoRNA-promoter-TSS (FBgn0086667) -224 FBgn0086667 FBgn0086667 FBtr0091788 snoRNA:Psi28S-3342 snoRNA CTCF-S2-jox2017_R1_peak_460 chr2R 18889464 18889750 + 654 NA Intergenic Intergenic -3201 FBgn0034808 FBgn0034808 FBtr0071988 CG9896 protein_coding CTCF-S2-jox2017_R1_peak_1023 chr3R 17049212 17049496 + 652 NA promoter-TSS (FBgn0038872) protein_coding-promoter-TSS (FBgn0038872) -48 FBgn0038871 FBgn0038871 FBtr0084107 CG3337 protein_coding CTCF-S2-jox2017_R1_peak_1432 chrX 7572916 7573216 + 647 NA TTS (FBgn0004198) protein_coding-TTS (FBgn0004198) 15885 FBgn0029504 FBgn0029504 FBtr0071079 CHES-1-like protein_coding CTCF-S2-jox2017_R1_peak_387 chr2R 11706017 11706336 + 643 NA TTS (FBgn0053465) protein_coding-TTS (FBgn0053465) 2424 FBgn0053465 FBgn0053465 FBtr0301048 CG33465 protein_coding CTCF-S2-jox2017_R1_peak_17 chr2L 1362270 1362578 + 639 NA promoter-TSS (FBgn0053126) protein_coding-promoter-TSS (FBgn0053126) -692 FBgn0053126 FBgn0053126 FBtr0329947 NLaz protein_coding CTCF-S2-jox2017_R1_peak_1047 chr3R 19547692 19548057 + 638 NA Intergenic Intergenic -1212 FBgn0039109 FBgn0039109 FBtr0084448 CG10365 protein_coding CTCF-S2-jox2017_R1_peak_969 chr3R 12760494 12760803 + 635 NA promoter-TSS (FBgn0000015) protein_coding-promoter-TSS (FBgn0000015) -3313 FBgn0000015 FBgn0000015 FBtr0330709 Abd-B protein_coding CTCF-S2-jox2017_R1_peak_396 chr2R 12482191 12482557 + 635 NA promoter-TSS (FBgn0034142) protein_coding-promoter-TSS (FBgn0034142) -156 FBgn0034142 FBgn0034142 FBtr0087120 CG8306 protein_coding CTCF-S2-jox2017_R1_peak_683 chr3L 13838360 13838692 + 633 NA promoter-TSS (FBgn0029167) protein_coding-promoter-TSS (FBgn0029167) -628 FBgn0029167 FBgn0029167 FBtr0333020 Hml protein_coding CTCF-S2-jox2017_R1_peak_1245 chrUextra 17025985 17026318 + 632 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_80 chr2L 7281463 7281778 + 630 NA Intergenic Intergenic -4452 FBgn0010453 FBgn0010453 FBtr0089291 Wnt4 protein_coding CTCF-S2-jox2017_R1_peak_178 chr2L 15643818 15644189 + 628 NA TTS (FBgn0028863) protein_coding-TTS (FBgn0028863) 13919 FBgn0028518 FBgn0028518 FBtr0080755 CG18480 protein_coding CTCF-S2-jox2017_R1_peak_439 chr2R 16825587 16826116 + 627 NA Intergenic Intergenic -5682 FBgn0000044 FBgn0000044 FBtr0300946 Act57B protein_coding CTCF-S2-jox2017_R1_peak_366 chr2R 10335335 10335593 + 624 NA intron (FBgn0261613, intron 2 of 5) protein_coding-intron (FBgn0261613, intron 2 of 5) 12060 FBgn0261613 FBgn0261613 FBtr0302926 Oaz protein_coding CTCF-S2-jox2017_R1_peak_46 chr2L 4417999 4418436 + 623 NA TTS (FBgn0051963) tRNA-TTS (FBgn0051963) 831 FBgn0051963 FBgn0051963 FBtr0077458 tRNA:CR31963 tRNA CTCF-S2-jox2017_R1_peak_1028 chr3R 17313505 17313861 + 617 NA TTS (FBgn0038889) protein_coding-TTS (FBgn0038889) 5636 FBgn0038889 FBgn0038889 FBtr0084109 CG7922 protein_coding CTCF-S2-jox2017_R1_peak_1436 chrX 8570686 8571170 + 617 NA promoter-TSS (FBgn0030055) protein_coding-promoter-TSS (FBgn0030055) -168 FBgn0030055 FBgn0030055 FBtr0071221 CG12772 protein_coding CTCF-S2-jox2017_R1_peak_219 chr2L 19887516 19887822 + 616 NA intron (FBgn0263873, intron 3 of 15) protein_coding-intron (FBgn0263873, intron 4 of 15) 4881 FBgn0032827 FBgn0032827 FBtr0081312 CG10481 protein_coding CTCF-S2-jox2017_R1_peak_340 chr2R 7985066 7985299 + 609 NA intron (FBgn0086677, intron 1 of 2) protein_coding-intron (FBgn0086677, intron 1 of 2) 16401 FBgn0033680 FBgn0033680 FBtr0087981 CG13186 protein_coding CTCF-S2-jox2017_R1_peak_1443 chrX 9581745 9582134 + 606 NA promoter-TSS (FBgn0261522) protein_coding-promoter-TSS (FBgn0261522) -283 FBgn0261522 FBgn0261522 FBtr0302457 CG42657 protein_coding CTCF-S2-jox2017_R1_peak_9 chr2L 492270 492515 + 601 NA intron (FBgn0003963, intron 2 of 8) protein_coding-intron (FBgn0003963, intron 1 of 7) -12704 FBgn0043364 FBgn0043364 FBtr0310030 cbt protein_coding CTCF-S2-jox2017_R1_peak_906 chr3R 6490669 6490951 + 599 NA Intergenic Intergenic 8642 FBgn0085333 FBgn0085333 FBtr0112500 CG34304 protein_coding CTCF-S2-jox2017_R1_peak_957 chr3R 12399609 12399951 + 596 NA promoter-TSS (FBgn0038446) protein_coding-promoter-TSS (FBgn0038446) -200 FBgn0038446 FBgn0038446 FBtr0083303 CG14903 protein_coding CTCF-S2-jox2017_R1_peak_30 chr2L 3179775 3180040 + 595 NA intron (FBgn0085422, intron 12 of 12) protein_coding-intron (FBgn0085422, intron 12 of 12) 5918 FBgn0031512 FBgn0031512 FBtr0077578 CG15404 protein_coding CTCF-S2-jox2017_R1_peak_740 chr3L 17981310 17981586 + 586 NA intron (FBgn0000568, intron 4 of 7) protein_coding-intron (FBgn0000568, intron 2 of 5) 14730 FBgn0086081 FBgn0086081 FBtr0114357 snoRNA:Me28S-A30 snoRNA CTCF-S2-jox2017_R1_peak_510 chr3L 606999 607339 + 586 NA promoter-TSS (FBgn0016715) protein_coding-promoter-TSS (FBgn0016715) -600 FBgn0016715 FBgn0016715 FBtr0072561 Reg-2 protein_coding CTCF-S2-jox2017_R1_peak_1533 chrX 18023317 18023581 + 584 NA TTS (FBgn0262607) protein_coding-TTS (FBgn0262607) 762 FBgn0262607 FBgn0262607 FBtr0305281 CG43133 protein_coding CTCF-S2-jox2017_R1_peak_515 chr3L 868885 869133 + 584 NA exon (FBgn0035171, exon 5 of 7) protein_coding-exon (FBgn0035171, exon 5 of 7) 3613 FBgn0035171 FBgn0035171 FBtr0304699 CG12502 protein_coding CTCF-S2-jox2017_R1_peak_160 chr2L 14160898 14161156 + 582 NA TTS (FBgn0028906) protein_coding-TTS (FBgn0028906) 2195 FBgn0263037 FBgn0263037 FBtr0306928 CG43332 protein_coding CTCF-S2-jox2017_R1_peak_147 chr2L 12424581 12424864 + 577 NA promoter-TSS (FBgn0032428) protein_coding-promoter-TSS (FBgn0032428) -182 FBgn0032428 FBgn0032428 FBtr0080366 CG6405 protein_coding CTCF-S2-jox2017_R1_peak_877 chr3R 3807148 3807497 + 569 NA TTS (FBgn0037534) protein_coding-TTS (FBgn0037534) -1278 FBgn0259974 FBgn0259974 FBtr0300322 Sfp84E protein_coding CTCF-S2-jox2017_R1_peak_459 chr2R 18694328 18694701 + 553 NA promoter-TSS (FBgn0000405) protein_coding-promoter-TSS (FBgn0000405) -24 FBgn0000405 FBgn0000405 FBtr0071914 CycB protein_coding CTCF-S2-jox2017_R1_peak_765 chr3L 19287452 19287732 + 546 NA promoter-TSS (FBgn0028380) protein_coding-promoter-TSS (FBgn0028380) -275 FBgn0028380 FBgn0028380 FBtr0321324 fal protein_coding CTCF-S2-jox2017_R1_peak_437 chr2R 16794079 16794358 + 538 NA Intergenic Intergenic -2991 FBgn0034560 FBgn0034560 FBtr0071517 CG9235 protein_coding CTCF-S2-jox2017_R1_peak_1459 chrX 10975867 10976167 + 538 NA intron (FBgn0003366, intron 2 of 11) protein_coding-intron (FBgn0003366, intron 2 of 11) 4315 FBgn0003366 FBgn0003366 FBtr0073393 sev protein_coding CTCF-S2-jox2017_R1_peak_918 chr3R 8047868 8048121 + 538 NA promoter-TSS (FBgn0038000) protein_coding-promoter-TSS (FBgn0038000) -115 FBgn0038000 FBgn0038000 FBtr0082559 CG10014 protein_coding CTCF-S2-jox2017_R1_peak_1140 chr3RHet 2107029 2107354 + 535 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_880 chr3R 4215446 4215788 + 531 NA intron (FBgn0263416, intron 14 of 15) protein_coding-intron (FBgn0263416, intron 14 of 15) -1693 FBgn0051462 FBgn0051462 FBtr0081851 CG31462 protein_coding CTCF-S2-jox2017_R1_peak_1456 chrX 10631975 10632419 + 531 NA intron (FBgn0052676, intron 1 of 3) protein_coding-intron (FBgn0052676, intron 1 of 3) -6338 FBgn0003204 FBgn0003204 FBtr0071496 ras protein_coding CTCF-S2-jox2017_R1_peak_724 chr3L 16762974 16763360 + 530 NA intron (FBgn0004108, intron 1 of 2) protein_coding-intron (FBgn0004108, intron 1 of 2) 3995 FBgn0004108 FBgn0004108 FBtr0075323 Nrt protein_coding CTCF-S2-jox2017_R1_peak_1529 chrX 17714290 17714637 + 528 NA promoter-TSS (FBgn0030868) protein_coding-promoter-TSS (FBgn0030868) -745 FBgn0030868 FBgn0030868 FBtr0074474 CG12986 protein_coding CTCF-S2-jox2017_R1_peak_1052 chr3R 20303213 20303555 + 522 NA Intergenic Intergenic -7875 FBgn0000039 FBgn0000039 FBtr0084640 nAcRalpha-96Ab protein_coding CTCF-S2-jox2017_R1_peak_719 chr3L 16400932 16401308 + 521 NA intron (FBgn0014163, intron 1 of 4) protein_coding-intron (FBgn0014163, intron 1 of 4) 143 FBgn0014163 FBgn0014163 FBtr0100477 fax protein_coding CTCF-S2-jox2017_R1_peak_539 chr3L 3288480 3288795 + 518 NA intron (FBgn0035429, intron 5 of 6) protein_coding-intron (FBgn0035429, intron 5 of 6) -2822 FBgn0035430 FBgn0035430 FBtr0073053 CG12009 protein_coding CTCF-S2-jox2017_R1_peak_625 chr3L 9326839 9327181 + 517 NA promoter-TSS (FBgn0035975) protein_coding-promoter-TSS (FBgn0035975) -1779 FBgn0035975 FBgn0035975 FBtr0076433 PGRP-LA protein_coding CTCF-S2-jox2017_R1_peak_518 chr3L 1041542 1041846 + 516 NA intron (FBgn0004870, intron 1 of 3) protein_coding-intron (FBgn0004870, intron 1 of 3) 6509 FBgn0035181 FBgn0035181 FBtr0072622 CG9205 protein_coding CTCF-S2-jox2017_R1_peak_902 chr3R 6262792 6263077 + 514 NA TTS (FBgn0037817) protein_coding-TTS (FBgn0037817) 2423 FBgn0037817 FBgn0037817 FBtr0301283 Cyp12e1 protein_coding CTCF-S2-jox2017_R1_peak_854 chr3R 1996464 1996883 + 513 NA TTS (FBgn0037405) protein_coding-TTS (FBgn0037405) -2694 FBgn0037406 FBgn0037406 FBtr0078588 Osi1 protein_coding CTCF-S2-jox2017_R1_peak_203 chr2L 18776566 18776886 + 512 NA intron (FBgn0045852, intron 2 of 7) protein_coding-intron (FBgn0045852, intron 2 of 7) -2889 FBgn0264348 FBgn0264348 FBtr0332018 CR43804 ncRNA CTCF-S2-jox2017_R1_peak_231 chr2L 20922875 20923091 + 511 NA promoter-TSS (FBgn0032904) protein_coding-promoter-TSS (FBgn0032904) -107 FBgn0032904 FBgn0032904 FBtr0081439 Mtp protein_coding CTCF-S2-jox2017_R1_peak_1444 chrX 9643438 9643679 + 509 NA intron (FBgn0020378, intron 1 of 2) protein_coding-intron (FBgn0020378, intron 2 of 2) 19877 FBgn0020378 FBgn0020378 FBtr0331335 Sp1 protein_coding CTCF-S2-jox2017_R1_peak_1061 chr3R 20938292 20938629 + 509 NA promoter-TSS (FBgn0039277) protein_coding-promoter-TSS (FBgn0039277) -222 FBgn0039277 FBgn0039277 FBtr0113286 CG13650 protein_coding CTCF-S2-jox2017_R1_peak_455 chr2R 18185318 18185611 + 507 NA TTS (FBgn0034718) protein_coding-TTS (FBgn0034718) 4542 FBgn0034717 FBgn0034717 FBtr0071812 CG5819 protein_coding CTCF-S2-jox2017_R1_peak_794 chr3L 21476956 21477302 + 505 NA TTS (FBgn0037085) protein_coding-TTS (FBgn0037085) 6557 FBgn0037085 FBgn0037085 FBtr0078394 Neu2 protein_coding CTCF-S2-jox2017_R1_peak_671 chr3L 12059825 12060080 + 504 NA TTS (FBgn0250876) protein_coding-TTS (FBgn0250876) -1993 FBgn0041096 FBgn0041096 FBtr0334109 rols protein_coding CTCF-S2-jox2017_R1_peak_223 chr2L 20106551 20106992 + 501 NA Intergenic Intergenic -2681 FBgn0032851 FBgn0032851 FBtr0089388 CG13970 protein_coding CTCF-S2-jox2017_R1_peak_18 chr2L 1491882 1492190 + 500 NA promoter-TSS (FBgn0051928) protein_coding-promoter-TSS (FBgn0051928) -259 FBgn0051928 FBgn0051928 FBtr0077929 CG31928 protein_coding CTCF-S2-jox2017_R1_peak_1376 chrX 3086441 3086715 + 500 NA intron (FBgn0000479, intron 2 of 14) protein_coding-intron (FBgn0000479, intron 1 of 14) 16105 FBgn0000479 FBgn0000479 FBtr0070522 dnc protein_coding CTCF-S2-jox2017_R1_peak_218 chr2L 19817122 19817389 + 495 NA TTS (FBgn0043021) snRNA-TTS (FBgn0043021) 841 FBgn0043021 FBgn0043021 FBtr0081294 snRNA:U5:38ABb snRNA CTCF-S2-jox2017_R1_peak_742 chr3L 18012756 18013066 + 491 NA intron (FBgn0000568, intron 3 of 7) protein_coding-intron (FBgn0000568, intron 1 of 5) -16733 FBgn0086081 FBgn0086081 FBtr0114357 snoRNA:Me28S-A30 snoRNA CTCF-S2-jox2017_R1_peak_175 chr2L 15498796 15499101 + 489 NA promoter-TSS (FBgn0002524) protein_coding-promoter-TSS (FBgn0002524) -162 FBgn0002524 FBgn0002524 FBtr0080738 lace protein_coding CTCF-S2-jox2017_R1_peak_596 chr3L 6987808 6988070 + 489 NA TTS (FBgn0045759) protein_coding-TTS (FBgn0045759) -4004 FBgn0260660 FBgn0260660 FBtr0308094 mp protein_coding CTCF-S2-jox2017_R1_peak_1040 chr3R 18993461 18993749 + 488 NA promoter-TSS (FBgn0039060) protein_coding-promoter-TSS (FBgn0039060) -519 FBgn0039060 FBgn0039060 FBtr0084370 CG13836 protein_coding CTCF-S2-jox2017_R1_peak_1205 chrUextra 3094438 3094778 + 487 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_648 chr3L 10879112 10879348 + 486 NA promoter-TSS (FBgn0027615) protein_coding-promoter-TSS (FBgn0027615) -80 FBgn0027615 FBgn0027615 FBtr0076271 CG6404 protein_coding CTCF-S2-jox2017_R1_peak_679 chr3L 13220628 13220872 + 485 NA Intergenic Intergenic -1042 FBgn0023095 FBgn0023095 FBtr0305480 caps protein_coding CTCF-S2-jox2017_R1_peak_476 chr2R 20225082 20225345 + 483 NA Intergenic Intergenic -3384 FBgn0005638 FBgn0005638 FBtr0072272 slbo protein_coding CTCF-S2-jox2017_R1_peak_1254 chrUextra 19603813 19604136 + 482 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_299 chr2R 5707618 5707889 + 476 NA promoter-TSS (FBgn0033446) protein_coding-promoter-TSS (FBgn0033446) -315 FBgn0054033 FBgn0054033 FBtr0100088 CG34033 protein_coding CTCF-S2-jox2017_R1_peak_369 chr2R 10511967 10512273 + 475 NA TTS (FBgn0082930) snoRNA-TTS (FBgn0082930) 362 FBgn0082919 FBgn0082919 FBtr0113511 snoRNA:Or-CD4 snoRNA CTCF-S2-jox2017_R1_peak_1209 chrUextra 5223991 5224507 + 473 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_763 chr3L 19133494 19133757 + 471 NA TTS (FBgn0016797) protein_coding-TTS (FBgn0016797) -1550 FBgn0036851 FBgn0036851 FBtr0330092 CG14082 protein_coding CTCF-S2-jox2017_R1_peak_722 chr3L 16698767 16699071 + 471 NA exon (FBgn0036654, exon 2 of 2) protein_coding-exon (FBgn0036654, exon 2 of 2) 846 FBgn0036654 FBgn0036654 FBtr0075317 CG9692 protein_coding CTCF-S2-jox2017_R1_peak_1079 chr3R 22392538 22392792 + 471 NA exon (FBgn0263289, exon 7 of 23) protein_coding-exon (FBgn0263289, exon 7 of 23) 30593 FBgn0263289 FBgn0263289 FBtr0308629 scrib protein_coding CTCF-S2-jox2017_R1_peak_745 chr3L 18107433 18107844 + 471 NA exon (FBgn0052195, exon 2 of 4) protein_coding-exon (FBgn0052195, exon 2 of 4) 254 FBgn0052195 FBgn0052195 FBtr0333697 CG32195 protein_coding CTCF-S2-jox2017_R1_peak_338 chr2R 7712623 7712953 + 470 NA promoter-TSS (FBgn0033653) protein_coding-promoter-TSS (FBgn0033653) -82 FBgn0033653 FBgn0033653 FBtr0088031 CG13192 protein_coding CTCF-S2-jox2017_R1_peak_57 chr2L 5365774 5366247 + 469 NA TTS (FBgn0016920) protein_coding-TTS (FBgn0016920) 15064 FBgn0262097 FBgn0262097 FBtr0310549 CG42850 protein_coding CTCF-S2-jox2017_R1_peak_411 chr2R 14401492 14401753 + 464 NA promoter-TSS (FBgn0262476) protein_coding-promoter-TSS (FBgn0262476) -507 FBgn0262476 FBgn0262476 FBtr0304867 CG43066 protein_coding CTCF-S2-jox2017_R1_peak_786 chr3L 20791578 20791863 + 461 NA promoter-TSS (FBgn0037024) protein_coding-promoter-TSS (FBgn0037024) -62 FBgn0037024 FBgn0037024 FBtr0078253 CG4365 protein_coding CTCF-S2-jox2017_R1_peak_16 chr2L 1006611 1006927 + 460 NA Intergenic Intergenic 20121 FBgn0031295 FBgn0031295 FBtr0310271 CG4375 protein_coding CTCF-S2-jox2017_R1_peak_480 chr2R 20972982 20973270 + 460 NA TTS (FBgn0003715) protein_coding-TTS (FBgn0003715) -1283 FBgn0004919 FBgn0004919 FBtr0306330 gol protein_coding CTCF-S2-jox2017_R1_peak_757 chr3L 18841556 18841990 + 458 NA Intergenic Intergenic 7094 FBgn0052027 FBgn0052027 FBtr0307116 CR32027 ncRNA CTCF-S2-jox2017_R1_peak_1375 chrX 3028592 3028909 + 457 NA promoter-TSS (FBgn0004647) protein_coding-promoter-TSS (FBgn0004647) -155 FBgn0004647 FBgn0004647 FBtr0304659 N protein_coding CTCF-S2-jox2017_R1_peak_1126 chr3R 26959814 26960044 + 453 NA promoter-TSS (FBgn0013973) protein_coding-promoter-TSS (FBgn0013973) -185 FBgn0013973 FBgn0013973 FBtr0085753 Gycbeta100B protein_coding CTCF-S2-jox2017_R1_peak_591 chr3L 6897099 6897364 + 450 NA Intergenic Intergenic 9833 FBgn0041194 FBgn0041194 FBtr0076946 Prat2 protein_coding CTCF-S2-jox2017_R1_peak_388 chr2R 11708810 11709092 + 445 NA promoter-TSS (FBgn0053465) protein_coding-promoter-TSS (FBgn0053465) -351 FBgn0053465 FBgn0053465 FBtr0301048 CG33465 protein_coding CTCF-S2-jox2017_R1_peak_1383 chrX 3620037 3620425 + 443 NA intron (FBgn0086899, intron 1 of 7) protein_coding-intron (FBgn0086899, intron 1 of 7) -6566 FBgn0015286 FBgn0015286 FBtr0070584 Rala protein_coding CTCF-S2-jox2017_R1_peak_1090 chr3R 24171113 24171416 + 442 NA TTS (FBgn0039581) protein_coding-TTS (FBgn0039581) 5204 FBgn0039581 FBgn0039581 FBtr0300346 Moca-cyp protein_coding CTCF-S2-jox2017_R1_peak_442 chr2R 17126390 17126690 + 441 NA intron (FBgn0034606, intron 1 of 7) protein_coding-intron (FBgn0034606, intron 1 of 7) 12115 FBgn0034606 FBgn0034606 FBtr0071623 ASPP protein_coding CTCF-S2-jox2017_R1_peak_40 chr2L 3786231 3786564 + 439 NA promoter-TSS (FBgn0031571) protein_coding-promoter-TSS (FBgn0031571) 578 FBgn0051958 FBgn0051958 FBtr0077495 CG31958 protein_coding CTCF-S2-jox2017_R1_peak_787 chr3L 20834618 20834904 + 431 NA promoter-TSS (FBgn0037031) protein_coding-promoter-TSS (FBgn0037031) -85 FBgn0027055 FBgn0027055 FBtr0078269 CSN3 protein_coding CTCF-S2-jox2017_R1_peak_275 chr2R 3940208 3940478 + 428 NA TTS (FBgn0033252) protein_coding-TTS (FBgn0033252) 5713 FBgn0033252 FBgn0033252 FBtr0088828 CG12769 protein_coding CTCF-S2-jox2017_R1_peak_949 chr3R 11629783 11630024 + 427 NA promoter-TSS (FBgn0026616) protein_coding-promoter-TSS (FBgn0026616) -71 FBgn0026616 FBgn0026616 FBtr0083179 alpha-Man-IIb protein_coding CTCF-S2-jox2017_R1_peak_1121 chr3R 26696286 26696568 + 426 NA TTS (FBgn0039806) protein_coding-TTS (FBgn0039806) 1575 FBgn0039806 FBgn0039806 FBtr0085719 CG15545 protein_coding CTCF-S2-jox2017_R1_peak_955 chr3R 12257402 12257754 + 423 NA promoter-TSS (FBgn0051282) tRNA-promoter-TSS (FBgn0051282) -84 FBgn0051282 FBgn0051282 FBtr0083285 tRNA:CR31282 tRNA CTCF-S2-jox2017_R1_peak_926 chr3R 8903064 8903392 + 423 NA exon (FBgn0004666, exon 8 of 8) protein_coding-exon (FBgn0004666, exon 8 of 8) -8718 FBgn0262365 FBgn0262365 FBtr0304647 CG43063 protein_coding CTCF-S2-jox2017_R1_peak_1393 chrX 4401198 4401483 + 421 NA intron (FBgn0052773, intron 2 of 4) protein_coding-intron (FBgn0052773, intron 2 of 4) -22924 FBgn0029708 FBgn0029708 FBtr0070674 CG3556 protein_coding CTCF-S2-jox2017_R1_peak_1097 chr3R 24461339 24461632 + 416 NA promoter-TSS (FBgn0039591) protein_coding-promoter-TSS (FBgn0039591) -649 FBgn0039591 FBgn0039591 FBtr0085305 CG9988 protein_coding CTCF-S2-jox2017_R1_peak_454 chr2R 18021413 18021688 + 415 NA Intergenic Intergenic -2835 FBgn0085234 FBgn0085234 FBtr0112398 CG34205 protein_coding CTCF-S2-jox2017_R1_peak_1249 chrUextra 18119382 18119764 + 410 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_370 chr2R 10541350 10541684 + 402 NA Intergenic Intergenic 4743 FBgn0033952 FBgn0033952 FBtr0087482 Adgf-E protein_coding CTCF-S2-jox2017_R1_peak_987 chr3R 13744770 13745001 + 400 NA promoter-TSS (FBgn0263995) protein_coding-promoter-TSS (FBgn0263995) -2585 FBgn0053547 FBgn0053547 FBtr0305019 Rim protein_coding CTCF-S2-jox2017_R1_peak_1020 chr3R 16843244 16843529 + 399 NA promoter-TSS (FBgn0026056) protein_coding-promoter-TSS (FBgn0026056) -37 FBgn0026056 FBgn0026056 FBtr0084002 Rlip protein_coding CTCF-S2-jox2017_R1_peak_1458 chrX 10726446 10726707 + 399 NA TTS (FBgn0003321) protein_coding-TTS (FBgn0003321) -6687 FBgn0040850 FBgn0040850 FBtr0073377 CG15210 protein_coding CTCF-S2-jox2017_R1_peak_74 chr2L 6593396 6593629 + 399 NA intron (FBgn0031835, intron 1 of 15) protein_coding-intron (FBgn0031835, intron 1 of 15) 7554 FBgn0031835 FBgn0031835 FBtr0089641 CG11319 protein_coding CTCF-S2-jox2017_R1_peak_196 chr2L 17960191 17960550 + 396 NA Intergenic Intergenic -3044 FBgn0032656 FBgn0032656 FBtr0290267 CG5674 protein_coding CTCF-S2-jox2017_R1_peak_593 chr3L 6899852 6900143 + 394 NA Intergenic Intergenic 7067 FBgn0041194 FBgn0041194 FBtr0076946 Prat2 protein_coding CTCF-S2-jox2017_R1_peak_292 chr2R 5004728 5005149 + 394 NA exon (FBgn0003612, exon 2 of 8) protein_coding-exon (FBgn0003612, exon 2 of 8) 1307 FBgn0003612 FBgn0003612 FBtr0088578 Su(var)2-10 protein_coding CTCF-S2-jox2017_R1_peak_400 chr2R 12759520 12759780 + 390 NA promoter-TSS (FBgn0025827) protein_coding-promoter-TSS (FBgn0025827) -105 FBgn0025827 FBgn0025827 FBtr0087043 CG6421 protein_coding CTCF-S2-jox2017_R1_peak_901 chr3R 6241699 6241950 + 389 NA promoter-TSS (FBgn0037816) protein_coding-promoter-TSS (FBgn0037816) -58 FBgn0037816 FBgn0037816 FBtr0082258 CG6345 protein_coding CTCF-S2-jox2017_R1_peak_891 chr3R 5400054 5400311 + 388 NA promoter-TSS (FBgn0037715) protein_coding-promoter-TSS (FBgn0037715) -255 FBgn0037715 FBgn0037715 FBtr0082109 CG9399 protein_coding CTCF-S2-jox2017_R1_peak_864 chr3R 2737952 2738209 + 387 NA intron (FBgn0260642, intron 2 of 6) protein_coding-intron (FBgn0260642, intron 1 of 4) -7676 FBgn0262897 FBgn0262897 FBtr0306313 CG43252 protein_coding CTCF-S2-jox2017_R1_peak_418 chr2R 15035506 15035895 + 385 NA intron (FBgn0000578, intron 2 of 10) protein_coding-intron (FBgn0000578, intron 1 of 9) 3649 FBgn0263290 FBgn0263290 FBtr0308635 CR43399 ncRNA CTCF-S2-jox2017_R1_peak_12 chr2L 602330 602665 + 383 NA promoter-TSS (FBgn0031270) protein_coding-promoter-TSS (FBgn0031270) -316 FBgn0031270 FBgn0031270 FBtr0078071 CG13689 protein_coding CTCF-S2-jox2017_R1_peak_192 chr2L 17589700 17590196 + 383 NA promoter-TSS (FBgn0032651) protein_coding-promoter-TSS (FBgn0032651) -192 FBgn0032651 FBgn0032651 FBtr0303253 Oli protein_coding CTCF-S2-jox2017_R1_peak_1536 chrX 18133412 18133660 + 382 NA Intergenic Intergenic 3781 FBgn0030904 FBgn0030904 FBtr0300182 upd2 protein_coding CTCF-S2-jox2017_R1_peak_619 chr3L 9047950 9048232 + 381 NA intron (FBgn0000116, intron 2 of 2) protein_coding-intron (FBgn0000116, intron 3 of 3) -1430 FBgn0000116 FBgn0000116 FBtr0076546 Argk protein_coding CTCF-S2-jox2017_R1_peak_733 chr3L 17230130 17230406 + 378 NA intron (FBgn0260943, intron 1 of 14) protein_coding-intron (FBgn0260943, intron 1 of 14) 1044 FBgn0260943 FBgn0260943 FBtr0113427 Rbp6 protein_coding CTCF-S2-jox2017_R1_peak_1155 chr4 437009 437325 + 378 NA Intergenic Intergenic -9526 FBgn0263385 FBgn0263385 FBtr0309072 CR43437 ncRNA CTCF-S2-jox2017_R1_peak_1042 chr3R 19157098 19157355 + 378 NA intron (FBgn0003118, intron 3 of 8) protein_coding-intron (FBgn0003118, intron 3 of 8) 14658 FBgn0003118 FBgn0003118 FBtr0089715 pnt protein_coding CTCF-S2-jox2017_R1_peak_1557 chrX 20396037 20396347 + 375 NA promoter-TSS (FBgn0026323) protein_coding-promoter-TSS (FBgn0026323) -239 FBgn0026323 FBgn0026323 FBtr0077319 Tak1 protein_coding CTCF-S2-jox2017_R1_peak_578 chr3L 5862769 5863120 + 371 NA Intergenic Intergenic -1657 FBgn0035641 FBgn0035641 FBtr0077025 CG5568 protein_coding CTCF-S2-jox2017_R1_peak_123 chr2L 10615162 10615455 + 368 NA intron (FBgn0051721, intron 1 of 9) protein_coding-intron (FBgn0051721, intron 1 of 8) 24200 FBgn0032271 FBgn0032271 FBtr0080131 CG7329 protein_coding CTCF-S2-jox2017_R1_peak_1060 chr3R 20525051 20525319 + 364 NA intron (FBgn0003429, intron 15 of 22) protein_coding-intron (FBgn0003429, intron 16 of 24) -15321 FBgn0039217 FBgn0039217 FBtr0084687 CG13627 protein_coding CTCF-S2-jox2017_R1_peak_728 chr3L 16923709 16923961 + 362 NA TTS (FBgn0036678) protein_coding-TTS (FBgn0036678) -3301 FBgn0036677 FBgn0036677 FBtr0075307 CG13023 protein_coding CTCF-S2-jox2017_R1_peak_1191 chrU 4022770 4023097 + 361 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_138 chr2L 12078189 12078485 + 360 NA TTS (FBgn0032406) protein_coding-TTS (FBgn0032406) 1514 FBgn0032406 FBgn0032406 FBtr0080297 CG14947 protein_coding CTCF-S2-jox2017_R1_peak_516 chr3L 882898 883276 + 359 NA intron (FBgn0052479, intron 4 of 9) protein_coding-intron (FBgn0052479, intron 4 of 9) -1074 FBgn0035173 FBgn0035173 FBtr0072593 CG13907 protein_coding CTCF-S2-jox2017_R1_peak_1506 chrX 15547501 15547898 + 359 NA Intergenic Intergenic -8919 FBgn0030664 FBgn0030664 FBtr0074051 CG8119 protein_coding CTCF-S2-jox2017_R1_peak_1222 chrUextra 8455317 8455703 + 359 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_346 chr2R 8408728 8409052 + 358 NA promoter-TSS (FBgn0053632) protein_coding-promoter-TSS (FBgn0053632) -638 FBgn0053632 FBgn0053632 FBtr0091609 CG33632 protein_coding CTCF-S2-jox2017_R1_peak_374 chr2R 10822809 10823072 + 358 NA promoter-TSS (FBgn0033984) protein_coding-promoter-TSS (FBgn0033984) -242 FBgn0033984 FBgn0033984 FBtr0303759 Lap1 protein_coding CTCF-S2-jox2017_R1_peak_288 chr2R 4696072 4696367 + 357 NA intron (FBgn0024189, intron 1 of 21) protein_coding-intron (FBgn0024189, intron 1 of 20) 10197 FBgn0024189 FBgn0024189 FBtr0111043 sns protein_coding CTCF-S2-jox2017_R1_peak_468 chr2R 19489305 19489591 + 357 NA promoter-TSS (FBgn0034882) protein_coding-promoter-TSS (FBgn0034882) -152 FBgn0260455 FBgn0260455 FBtr0072109 CG10332 protein_coding CTCF-S2-jox2017_R1_peak_103 chr2L 9539979 9540271 + 356 NA promoter-TSS (FBgn0032124) protein_coding-promoter-TSS (FBgn0032124) -506 FBgn0032124 FBgn0032124 FBtr0079830 CG17855 protein_coding CTCF-S2-jox2017_R1_peak_64 chr2L 6323490 6323788 + 353 NA promoter-TSS (FBgn0021873) protein_coding-promoter-TSS (FBgn0021873) -128 FBgn0021873 FBgn0021873 FBtr0300039 Gef26 protein_coding CTCF-S2-jox2017_R1_peak_1416 chrX 5801979 5802263 + 353 NA promoter-TSS (FBgn0029822) protein_coding-promoter-TSS (FBgn0029822) -37 FBgn0029822 FBgn0029822 FBtr0070826 CG12236 protein_coding CTCF-S2-jox2017_R1_peak_424 chr2R 15713778 15714133 + 346 NA promoter-TSS (FBgn0034476) protein_coding-promoter-TSS (FBgn0034476) -455 FBgn0034476 FBgn0034476 FBtr0086336 Toll-7 protein_coding CTCF-S2-jox2017_R1_peak_358 chr2R 9716685 9716978 + 345 NA intron (FBgn0033872, intron 1 of 3) protein_coding-intron (FBgn0033872, intron 1 of 3) 2365 FBgn0033872 FBgn0033872 FBtr0087635 CG6329 protein_coding CTCF-S2-jox2017_R1_peak_976 chr3R 13442310 13442663 + 345 NA promoter-TSS (FBgn0012002) tRNA-promoter-TSS (FBgn0012002) -997 FBgn0012002 FBgn0012002 FBtr0083466 tRNA:V3b:90BC tRNA CTCF-S2-jox2017_R1_peak_911 chr3R 7094777 7095048 + 341 NA TTS (FBgn0051386) ncRNA-TTS (FBgn0051386) -13067 FBgn0262972 FBgn0262972 FBtr0306728 CR43283 ncRNA CTCF-S2-jox2017_R1_peak_1442 chrX 9552916 9553178 + 340 NA TTS (FBgn0030148) protein_coding-TTS (FBgn0030148) 3744 FBgn0030148 FBgn0030148 FBtr0071403 CG3106 protein_coding CTCF-S2-jox2017_R1_peak_126 chr2L 10986098 10986381 + 339 NA intron (FBgn0004872, intron 1 of 7) protein_coding-intron (FBgn0004872, intron 1 of 7) 1177 FBgn0004872 FBgn0004872 FBtr0080166 piwi protein_coding CTCF-S2-jox2017_R1_peak_166 chr2L 14588913 14589162 + 337 NA promoter-TSS (FBgn0261566) protein_coding-promoter-TSS (FBgn0261566) -803 FBgn0261566 FBgn0261566 FBtr0302802 CG42680 protein_coding CTCF-S2-jox2017_R1_peak_1224 chrUextra 8511012 8511412 + 336 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1021 chr3R 17005363 17005625 + 336 NA intron (FBgn0264357, intron 6 of 12) protein_coding-intron (FBgn0264357, intron 6 of 12) -11567 FBgn0260004 FBgn0260004 FBtr0084027 Snmp1 protein_coding CTCF-S2-jox2017_R1_peak_682 chr3L 13404211 13404425 + 333 NA TTS (FBgn0036356) protein_coding-TTS (FBgn0036356) 1235 FBgn0036356 FBgn0036356 FBtr0075861 CG10222 protein_coding CTCF-S2-jox2017_R1_peak_1547 chrX 18737415 18737741 + 331 NA promoter-TSS (FBgn0085451) protein_coding-promoter-TSS (FBgn0085451) -118 FBgn0085451 FBgn0085451 FBtr0310365 CG34422 protein_coding CTCF-S2-jox2017_R1_peak_975 chr3R 13275175 13275467 + 330 NA promoter-TSS (FBgn0000564) protein_coding-promoter-TSS (FBgn0000564) -71 FBgn0000564 FBgn0000564 FBtr0083444 Eh protein_coding CTCF-S2-jox2017_R1_peak_1544 chrX 18529368 18529677 + 329 NA promoter-TSS (FBgn0030941) protein_coding-promoter-TSS (FBgn0030941) -586 FBgn0030941 FBgn0030941 FBtr0074617 wgn protein_coding CTCF-S2-jox2017_R1_peak_1365 chrX 2152751 2152960 + 329 NA intron (FBgn0023524, intron 1 of 4) protein_coding-intron (FBgn0023524, intron 1 of 4) 1041 FBgn0023524 FBgn0023524 FBtr0070415 CG3078 protein_coding CTCF-S2-jox2017_R1_peak_1233 chrUextra 12442315 12442703 + 328 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_573 chr3L 5601373 5601618 + 328 NA promoter-TSS (FBgn0035624) protein_coding-promoter-TSS (FBgn0035624) -95 FBgn0035624 FBgn0035624 FBtr0077126 Eaf6 protein_coding CTCF-S2-jox2017_R1_peak_31 chr2L 3183231 3183565 + 327 NA exon (FBgn0085422, exon 12 of 13) protein_coding-exon (FBgn0085422, exon 12 of 13) 9409 FBgn0031512 FBgn0031512 FBtr0077578 CG15404 protein_coding CTCF-S2-jox2017_R1_peak_1560 chrX 20631376 20631804 + 326 NA TTS (FBgn0085387) protein_coding-TTS (FBgn0085387) 390 FBgn0264390 FBgn0264390 FBtr0332284 CR43838 ncRNA CTCF-S2-jox2017_R1_peak_927 chr3R 8904020 8904320 + 326 NA TTS (FBgn0004666) protein_coding-TTS (FBgn0004666) -7776 FBgn0262365 FBgn0262365 FBtr0304647 CG43063 protein_coding CTCF-S2-jox2017_R1_peak_928 chr3R 9297132 9297373 + 325 NA Intergenic Intergenic -5424 FBgn0040554 FBgn0040554 FBtr0309274 CR17025 ncRNA CTCF-S2-jox2017_R1_peak_331 chr2R 7339848 7340116 + 323 NA promoter-TSS (FBgn0000581) protein_coding-promoter-TSS (FBgn0000581) 434 FBgn0000581 FBgn0000581 FBtr0088140 E(Pc) protein_coding CTCF-S2-jox2017_R1_peak_89 chr2L 7890782 7891021 + 322 NA promoter-TSS (FBgn0053121) protein_coding-promoter-TSS (FBgn0053121) -307 FBgn0053121 FBgn0053121 FBtr0079557 Spn28Db protein_coding CTCF-S2-jox2017_R1_peak_1206 chrUextra 3204675 3204994 + 322 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_171 chr2L 15113228 15113464 + 318 NA promoter-TSS (FBgn0001978) protein_coding-promoter-TSS (FBgn0001978) -134 FBgn0001978 FBgn0001978 FBtr0332474 stc protein_coding CTCF-S2-jox2017_R1_peak_1537 chrX 18251988 18252346 + 317 NA promoter-TSS (FBgn0030914) protein_coding-promoter-TSS (FBgn0030914) -749 FBgn0030914 FBgn0030914 FBtr0074553 CG6106 protein_coding CTCF-S2-jox2017_R1_peak_75 chr2L 6684682 6684943 + 316 NA promoter-TSS (FBgn0028703) protein_coding-promoter-TSS (FBgn0028703) -455 FBgn0028703 FBgn0028703 FBtr0333347 Nhe3 protein_coding CTCF-S2-jox2017_R1_peak_361 chr2R 9855584 9855829 + 315 NA promoter-TSS (FBgn0020766) protein_coding-promoter-TSS (FBgn0020766) -146 FBgn0020766 FBgn0020766 FBtr0087594 Aats-phe protein_coding CTCF-S2-jox2017_R1_peak_125 chr2L 10940259 10940456 + 313 NA intron (FBgn0261871, intron 2 of 8) protein_coding-intron (FBgn0261871, intron 2 of 7) 3695 FBgn0032318 FBgn0032318 FBtr0080145 CG14072 protein_coding CTCF-S2-jox2017_R1_peak_1452 chrX 10536279 10536652 + 311 NA intron (FBgn0052677, intron 2 of 12) protein_coding-intron (FBgn0052677, intron 2 of 14) 14695 FBgn0052677 FBgn0052677 FBtr0071493 X11Lbeta protein_coding CTCF-S2-jox2017_R1_peak_697 chr3L 14555784 14556050 + 307 NA TTS (FBgn0054039) protein_coding-TTS (FBgn0054039) -2053 FBgn0028418 FBgn0028418 FBtr0075722 Lk protein_coding CTCF-S2-jox2017_R1_peak_917 chr3R 7491255 7491485 + 306 NA intron (FBgn0259227, intron 1 of 4) protein_coding-intron (FBgn0259227, intron 1 of 4) -8571 FBgn0037930 FBgn0037930 FBtr0082423 CG14715 protein_coding CTCF-S2-jox2017_R1_peak_15 chr2L 871604 871859 + 304 NA exon (FBgn0053526, exon 3 of 5) protein_coding-exon (FBgn0053526, exon 3 of 5) 1266 FBgn0053526 FBgn0053526 FBtr0091486 PNUTS protein_coding CTCF-S2-jox2017_R1_peak_354 chr2R 9340974 9341238 + 303 NA TTS (FBgn0086757) protein_coding-TTS (FBgn0086757) 2937 FBgn0086757 FBgn0086757 FBtr0309887 cbs protein_coding CTCF-S2-jox2017_R1_peak_1556 chrX 20256924 20257133 + 302 NA Intergenic Intergenic -1939 FBgn0085340 FBgn0085340 FBtr0112509 CR34311 pseudogene CTCF-S2-jox2017_R1_peak_936 chr3R 10403040 10403324 + 301 NA exon (FBgn0020299, exon 1 of 7) protein_coding-exon (FBgn0020299, exon 1 of 7) 241 FBgn0020299 FBgn0020299 FBtr0082959 stumps protein_coding CTCF-S2-jox2017_R1_peak_298 chr2R 5698200 5698483 + 301 NA TTS (FBgn0033446) protein_coding-TTS (FBgn0033446) 1938 FBgn0033446 FBgn0033446 FBtr0088494 CG1648 protein_coding CTCF-S2-jox2017_R1_peak_1070 chr3R 21676914 21677147 + 299 NA promoter-TSS (FBgn0039379) protein_coding-promoter-TSS (FBgn0039379) -17 FBgn0040602 FBgn0040602 FBtr0084913 CG14545 protein_coding CTCF-S2-jox2017_R1_peak_1094 chr3R 24370801 24371116 + 298 NA promoter-TSS (FBgn0039588) protein_coding-promoter-TSS (FBgn0039588) -434 FBgn0039588 FBgn0039588 FBtr0085293 CG12413 protein_coding CTCF-S2-jox2017_R1_peak_56 chr2L 5278351 5278672 + 296 NA promoter-TSS (FBgn0031696) protein_coding-promoter-TSS (FBgn0031696) 47 FBgn0000228 FBgn0000228 FBtr0302567 Bsg25D protein_coding CTCF-S2-jox2017_R1_peak_715 chr3L 15947816 15948091 + 296 NA promoter-TSS (FBgn0036545) protein_coding-promoter-TSS (FBgn0036545) -243 FBgn0036545 FBgn0036545 FBtr0273189 GXIVsPLA2 protein_coding CTCF-S2-jox2017_R1_peak_580 chr3L 6075815 6076097 + 295 NA promoter-TSS (FBgn0035677) protein_coding-promoter-TSS (FBgn0035677) -27 FBgn0035677 FBgn0035677 FBtr0332064 CG13293 protein_coding CTCF-S2-jox2017_R1_peak_582 chr3L 6257599 6257863 + 294 NA Intergenic Intergenic -3471 FBgn0001258 FBgn0001258 FBtr0332066 ImpL3 protein_coding CTCF-S2-jox2017_R1_peak_630 chr3L 9607137 9607356 + 294 NA promoter-TSS (FBgn0002528) protein_coding-promoter-TSS (FBgn0002528) -768 FBgn0002528 FBgn0002528 FBtr0076382 LanB2 protein_coding CTCF-S2-jox2017_R1_peak_1524 chrX 17426339 17426618 + 294 NA promoter-TSS (FBgn0263706) protein_coding-promoter-TSS (FBgn0263706) 36783 FBgn0030844 FBgn0030844 FBtr0100574 ppk23 protein_coding CTCF-S2-jox2017_R1_peak_1355 chrX 903935 904164 + 294 NA Intergenic Intergenic 1627 FBgn0040338 FBgn0040338 FBtr0070184 TfIIA-S-2 protein_coding CTCF-S2-jox2017_R1_peak_321 chr2R 6926576 6926861 + 293 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -46373 FBgn0262817 FBgn0262817 FBtr0306049 CG43188 protein_coding CTCF-S2-jox2017_R1_peak_364 chr2R 10321754 10322026 + 292 NA Intergenic Intergenic -1514 FBgn0261613 FBgn0261613 FBtr0302926 Oaz protein_coding CTCF-S2-jox2017_R1_peak_698 chr3L 14600764 14601071 + 289 NA Intergenic Intergenic -6641 FBgn0003388 FBgn0003388 FBtr0304700 shd protein_coding CTCF-S2-jox2017_R1_peak_45 chr2L 4345754 4346005 + 289 NA TTS (FBgn0020762) protein_coding-TTS (FBgn0020762) 2143 FBgn0262375 FBgn0262375 FBtr0304206 mir-1005 pre_miRNA CTCF-S2-jox2017_R1_peak_1127 chr3R 27288787 27289089 + 289 NA promoter-TSS (FBgn0039850) protein_coding-promoter-TSS (FBgn0039850) -129 FBgn0039850 FBgn0039850 FBtr0085789 CG11333 protein_coding CTCF-S2-jox2017_R1_peak_973 chr3R 12934655 12934898 + 284 NA intron (FBgn0014141, intron 5 of 17) protein_coding-intron (FBgn0014141, intron 4 of 15) -10247 FBgn0014141 FBgn0014141 FBtr0089473 cher protein_coding CTCF-S2-jox2017_R1_peak_70 chr2L 6527050 6527302 + 283 NA TTS (FBgn0051637) protein_coding-TTS (FBgn0051637) 3333 FBgn0000320 FBgn0000320 FBtr0306113 eya protein_coding CTCF-S2-jox2017_R1_peak_397 chr2R 12560507 12560750 + 280 NA TTS (FBgn0050463) protein_coding-TTS (FBgn0050463) 1071 FBgn0085487 FBgn0085487 FBtr0112764 CG34458 protein_coding CTCF-S2-jox2017_R1_peak_1410 chrX 5457394 5457717 + 276 NA Intergenic Intergenic -3339 FBgn0263512 FBgn0263512 FBtr0100024 Vsx2 protein_coding CTCF-S2-jox2017_R1_peak_277 chr2R 4129167 4129358 + 276 NA Intergenic Intergenic 3898 FBgn0013726 FBgn0013726 FBtr0088793 pnut protein_coding CTCF-S2-jox2017_R1_peak_526 chr3L 2237173 2237475 + 274 NA promoter-TSS (FBgn0040507) protein_coding-promoter-TSS (FBgn0040507) -248 FBgn0035318 FBgn0035318 FBtr0072909 CG9018 protein_coding CTCF-S2-jox2017_R1_peak_1197 chrU 9151129 9151462 + 273 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1282 chrUextra 26550114 26550493 + 273 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1415 chrX 5777486 5777788 + 273 NA TTS (FBgn0029820) protein_coding-TTS (FBgn0029820) 3746 FBgn0029820 FBgn0029820 FBtr0070821 CG16721 protein_coding CTCF-S2-jox2017_R1_peak_90 chr2L 7953416 7953721 + 273 NA intron (FBgn0085450, intron 2 of 2) protein_coding-intron (FBgn0085450, intron 1 of 1) 23497 FBgn0085450 FBgn0085450 FBtr0112720 Snoo protein_coding CTCF-S2-jox2017_R1_peak_755 chr3L 18794458 18794785 + 273 NA promoter-TSS (FBgn0001078) protein_coding-promoter-TSS (FBgn0001078) 19154 FBgn0036814 FBgn0036814 FBtr0332801 CG14073 protein_coding CTCF-S2-jox2017_R1_peak_588 chr3L 6740294 6740530 + 273 NA promoter-TSS (FBgn0035713) protein_coding-promoter-TSS (FBgn0035713) -4148 FBgn0261934 FBgn0261934 FBtr0303748 dikar protein_coding CTCF-S2-jox2017_R1_peak_1039 chr3R 18985077 18985353 + 271 NA promoter-TSS (FBgn0039058) protein_coding-promoter-TSS (FBgn0039058) -177 FBgn0039058 FBgn0039058 FBtr0084401 VhaAC39-2 protein_coding CTCF-S2-jox2017_R1_peak_699 chr3L 14664741 14665025 + 271 NA TTS (FBgn0041604) protein_coding-TTS (FBgn0041604) 654 FBgn0262581 FBgn0262581 FBtr0304960 CG43121 protein_coding CTCF-S2-jox2017_R1_peak_1527 chrX 17614382 17614641 + 270 NA intron (FBgn0261570, intron 1 of 9) protein_coding-intron (FBgn0261570, intron 1 of 7) 10333 FBgn0261570 FBgn0261570 FBtr0302833 CG42684 protein_coding CTCF-S2-jox2017_R1_peak_1460 chrX 11047961 11048582 + 269 NA promoter-TSS (FBgn0030276) protein_coding-promoter-TSS (FBgn0030276) -436 FBgn0261277 FBgn0261277 FBtr0331743 rtv protein_coding CTCF-S2-jox2017_R1_peak_799 chr3L 22260474 22260733 + 269 NA promoter-TSS (FBgn0004179) protein_coding-promoter-TSS (FBgn0004179) 242 FBgn0004179 FBgn0004179 FBtr0078494 Csp protein_coding CTCF-S2-jox2017_R1_peak_1153 chr4 425050 425300 + 268 NA Intergenic Intergenic -8747 FBgn0262636 FBgn0262636 FBtr0307044 Lin29 protein_coding CTCF-S2-jox2017_R1_peak_1141 chr3RHet 2136534 2136777 + 267 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1027 chr3R 17307645 17307977 + 262 NA promoter-TSS (FBgn0038889) protein_coding-promoter-TSS (FBgn0038889) -236 FBgn0038889 FBgn0038889 FBtr0084109 CG7922 protein_coding CTCF-S2-jox2017_R1_peak_1270 chrUextra 24365671 24366007 + 259 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_283 chr2R 4281852 4282109 + 258 NA intron (FBgn0261588, intron 7 of 10) protein_coding-intron (FBgn0261588, intron 6 of 9) 17248 FBgn0033289 FBgn0033289 FBtr0088764 CG2121 protein_coding CTCF-S2-jox2017_R1_peak_1108 chr3R 25541780 25542143 + 257 NA promoter-TSS (FBgn0250832) protein_coding-promoter-TSS (FBgn0250832) 657 FBgn0039685 FBgn0039685 FBtr0085462 Obp99b protein_coding CTCF-S2-jox2017_R1_peak_1146 chr4 110355 110710 + 256 NA intron (FBgn0085432, intron 8 of 11) protein_coding-intron (FBgn0085432, intron 9 of 12) 20245 FBgn0085432 FBgn0085432 FBtr0112657 pan protein_coding CTCF-S2-jox2017_R1_peak_198 chr2L 18347992 18348277 + 255 NA intron (FBgn0000636, intron 1 of 6) protein_coding-intron (FBgn0000636, intron 1 of 7) 10892 FBgn0011559 FBgn0011559 FBtr0081054 Acp36DE protein_coding CTCF-S2-jox2017_R1_peak_291 chr2R 4954837 4955071 + 253 NA Intergenic Intergenic -1652 FBgn0011746 FBgn0011746 FBtr0300501 ana protein_coding CTCF-S2-jox2017_R1_peak_678 chr3L 12895828 12896065 + 250 NA promoter-TSS (FBgn0036324) protein_coding-promoter-TSS (FBgn0036324) -272 FBgn0036324 FBgn0036324 FBtr0113169 CG12520 protein_coding CTCF-S2-jox2017_R1_peak_585 chr3L 6682134 6682405 + 249 NA TTS (FBgn0035710) protein_coding-TTS (FBgn0035710) 3485 FBgn0035710 FBgn0035710 FBtr0076960 SP1173 protein_coding CTCF-S2-jox2017_R1_peak_1229 chrUextra 10241371 10241730 + 249 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_152 chr2L 13322046 13322302 + 249 NA intron (FBgn0264308, intron 1 of 5) protein_coding-intron (FBgn0264308, intron 1 of 5) 8947 FBgn0264308 FBgn0264308 FBtr0331504 CG43778 protein_coding CTCF-S2-jox2017_R1_peak_1386 chrX 3638502 3638728 + 249 NA intron (FBgn0086899, intron 1 of 7) protein_coding-intron (FBgn0086899, intron 1 of 7) -24950 FBgn0015286 FBgn0015286 FBtr0070584 Rala protein_coding CTCF-S2-jox2017_R1_peak_67 chr2L 6357053 6357261 + 248 NA TTS (FBgn0031803) protein_coding-TTS (FBgn0031803) 1078 FBgn0031804 FBgn0031804 FBtr0079280 CG9500 protein_coding CTCF-S2-jox2017_R1_peak_966 chr3R 12708210 12708659 + 247 NA intron (FBgn0263610, intron 3 of 7) ncRNA-intron (FBgn0263610, intron 2 of 6) -9698 FBgn0263595 FBgn0263595 FBtr0309896 CR43617 ncRNA CTCF-S2-jox2017_R1_peak_1517 chrX 16640912 16641167 + 247 NA intron (FBgn0027528, intron 1 of 10) protein_coding-intron (FBgn0027528, intron 1 of 10) 4115 FBgn0052574 FBgn0052574 FBtr0074329 Twdlalpha protein_coding CTCF-S2-jox2017_R1_peak_849 chr3R 1126371 1126656 + 246 NA exon (FBgn0037310, exon 2 of 3) protein_coding-exon (FBgn0037310, exon 2 of 3) 646 FBgn0037310 FBgn0037310 FBtr0078784 Tim17b1 protein_coding CTCF-S2-jox2017_R1_peak_1246 chrUextra 17373696 17374013 + 246 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_694 chr3L 14353330 14353595 + 246 NA intron (FBgn0001085, intron 4 of 4) protein_coding-intron (FBgn0001085, intron 4 of 4) 9345 FBgn0036421 FBgn0036421 FBtr0113170 CG13481 protein_coding CTCF-S2-jox2017_R1_peak_409 chr2R 14333914 14334143 + 245 NA promoter-TSS (FBgn0034350) protein_coding-promoter-TSS (FBgn0034350) -47 FBgn0050120 FBgn0050120 FBtr0299806 CG30120 protein_coding CTCF-S2-jox2017_R1_peak_1289 chrUextra 27485264 27485617 + 244 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_637 chr3L 10239495 10239789 + 244 NA Intergenic Intergenic -1836 FBgn0036078 FBgn0036078 FBtr0076300 Or67c protein_coding CTCF-S2-jox2017_R1_peak_878 chr3R 3891121 3891474 + 243 NA intron (FBgn0037546, intron 1 of 3) protein_coding-intron (FBgn0037546, intron 1 of 3) 6291 FBgn0037546 FBgn0037546 FBtr0081789 CG7918 protein_coding CTCF-S2-jox2017_R1_peak_21 chr2L 1884323 1884581 + 242 NA promoter-TSS (FBgn0031374) protein_coding-promoter-TSS (FBgn0031374) -170 FBgn0031374 FBgn0031374 FBtr0110882 CG7337 protein_coding CTCF-S2-jox2017_R1_peak_1110 chr3R 25729712 25729941 + 240 NA promoter-TSS (FBgn0039718) protein_coding-promoter-TSS (FBgn0039718) -303 FBgn0039718 FBgn0039718 FBtr0085515 CG15517 protein_coding CTCF-S2-jox2017_R1_peak_8 chr2L 421439 421645 + 239 NA promoter-TSS (FBgn0031254) protein_coding-promoter-TSS (FBgn0031254) -92 FBgn0031253 FBgn0031253 FBtr0078089 CG11885 protein_coding CTCF-S2-jox2017_R1_peak_189 chr2L 17260713 17260953 + 238 NA promoter-TSS (FBgn0032629) protein_coding-promoter-TSS (FBgn0032629) -101 FBgn0032629 FBgn0032629 FBtr0080972 beat-IIIc protein_coding CTCF-S2-jox2017_R1_peak_441 chr2R 17125588 17125965 + 237 NA intron (FBgn0034606, intron 2 of 7) protein_coding-intron (FBgn0034606, intron 2 of 7) 12879 FBgn0034606 FBgn0034606 FBtr0071623 ASPP protein_coding CTCF-S2-jox2017_R1_peak_1044 chr3R 19448659 19448907 + 235 NA intron (FBgn0051145, intron 8 of 15) protein_coding-intron (FBgn0051145, intron 5 of 13) -17574 FBgn0039094 FBgn0039094 FBtr0084481 CG10184 protein_coding CTCF-S2-jox2017_R1_peak_736 chr3L 17572450 17572710 + 233 NA intron (FBgn0000567, intron 5 of 7) protein_coding-intron (FBgn0000567, intron 5 of 7) -13318 FBgn0086080 FBgn0086080 FBtr0114356 snoRNA:Me28S-A576 snoRNA CTCF-S2-jox2017_R1_peak_1511 chrX 16138775 16139125 + 232 NA Intergenic Intergenic 9200 FBgn0003933 FBgn0003933 FBtr0074249 snRNA:U5:14B snRNA CTCF-S2-jox2017_R1_peak_769 chr3L 19997744 19998172 + 232 NA TTS (FBgn0036929) protein_coding-TTS (FBgn0036929) -1726 FBgn0261574 FBgn0261574 FBtr0332722 kug protein_coding CTCF-S2-jox2017_R1_peak_112 chr2L 9731470 9731686 + 231 NA TTS (FBgn0032139) protein_coding-TTS (FBgn0032139) 1638 FBgn0032139 FBgn0032139 FBtr0079863 CG13116 protein_coding CTCF-S2-jox2017_R1_peak_716 chr3L 16004391 16004627 + 231 NA exon (FBgn0263601, exon 1 of 4) protein_coding-exon (FBgn0263601, exon 1 of 4) -1100 FBgn0263601 FBgn0263601 FBtr0333578 mib1 protein_coding CTCF-S2-jox2017_R1_peak_330 chr2R 7323186 7323375 + 230 NA promoter-TSS (FBgn0033635) protein_coding-promoter-TSS (FBgn0033635) -471 FBgn0033635 FBgn0033635 FBtr0305074 CG7777 protein_coding CTCF-S2-jox2017_R1_peak_1212 chrUextra 6346364 6346810 + 229 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_922 chr3R 8549605 8549836 + 228 NA Intergenic Intergenic -4206 FBgn0002719 FBgn0002719 FBtr0330025 Men protein_coding CTCF-S2-jox2017_R1_peak_1005 chr3R 15884673 15884995 + 228 NA exon (FBgn0038772, exon 3 of 3) protein_coding-exon (FBgn0038772, exon 3 of 3) 1362 FBgn0038772 FBgn0038772 FBtr0083835 CG4973 protein_coding CTCF-S2-jox2017_R1_peak_210 chr2L 19363665 19363915 + 227 NA promoter-TSS (FBgn0032770) protein_coding-promoter-TSS (FBgn0032770) -566 FBgn0024245 FBgn0024245 FBtr0081224 dnt protein_coding CTCF-S2-jox2017_R1_peak_440 chr2R 16864386 16864605 + 226 NA promoter-TSS (FBgn0034564) protein_coding-promoter-TSS (FBgn0034564) -66 FBgn0034564 FBgn0034564 FBtr0071520 CG9344 protein_coding CTCF-S2-jox2017_R1_peak_1380 chrX 3347143 3347399 + 226 NA Intergenic Intergenic 7002 FBgn0029659 FBgn0029659 FBtr0331608 CG16782 protein_coding CTCF-S2-jox2017_R1_peak_1515 chrX 16527704 16527965 + 224 NA intron (FBgn0026181, intron 2 of 10) protein_coding-intron (FBgn0026181, intron 2 of 10) -1566 FBgn0030764 FBgn0030764 FBtr0074287 CG9777 protein_coding CTCF-S2-jox2017_R1_peak_782 chr3L 20573817 20574048 + 223 NA Intergenic Intergenic 39827 FBgn0001323 FBgn0001323 FBtr0078212 knrl protein_coding CTCF-S2-jox2017_R1_peak_626 chr3L 9349266 9349471 + 220 NA TTS (FBgn0052040) protein_coding-TTS (FBgn0052040) 1615 FBgn0035978 FBgn0035978 FBtr0301698 UGP protein_coding CTCF-S2-jox2017_R1_peak_1076 chr3R 22258321 22258655 + 219 NA Intergenic Intergenic 4176 FBgn0263382 FBgn0263382 FBtr0309068 CR43434 ncRNA CTCF-S2-jox2017_R1_peak_1120 chr3R 26640417 26640624 + 217 NA intron (FBgn0027598, intron 1 of 5) protein_coding-intron (FBgn0027598, intron 1 of 5) 6182 FBgn0027598 FBgn0027598 FBtr0310072 cindr protein_coding CTCF-S2-jox2017_R1_peak_1247 chrUextra 17985562 17985860 + 214 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_500 chr2RHet 3065515 3065800 + 213 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_182 chr2L 16743034 16743288 + 212 NA promoter-TSS (FBgn0032600) protein_coding-promoter-TSS (FBgn0032600) -65 FBgn0261068 FBgn0261068 FBtr0308804 LSm7 protein_coding CTCF-S2-jox2017_R1_peak_764 chr3L 19170941 19171440 + 212 NA intron (FBgn0016797, intron 4 of 5) protein_coding-intron (FBgn0016797, intron 5 of 6) -7442 FBgn0016797 FBgn0016797 FBtr0075029 fz2 protein_coding CTCF-S2-jox2017_R1_peak_209 chr2L 19319224 19319642 + 211 NA Intergenic Intergenic 19127 FBgn0032769 FBgn0032769 FBtr0081196 CG10750 protein_coding CTCF-S2-jox2017_R1_peak_720 chr3L 16405445 16405698 + 211 NA promoter-TSS (FBgn0028399) protein_coding-promoter-TSS (FBgn0028399) -251 FBgn0028399 FBgn0028399 FBtr0331174 TMS1 protein_coding CTCF-S2-jox2017_R1_peak_561 chr3L 4690722 4690940 + 211 NA promoter-TSS (FBgn0035568) protein_coding-promoter-TSS (FBgn0035568) -761 FBgn0035568 FBgn0035568 FBtr0073366 CG18418 protein_coding CTCF-S2-jox2017_R1_peak_1196 chrU 9142999 9143255 + 210 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_589 chr3L 6745378 6745586 + 209 NA promoter-TSS (FBgn0035714) protein_coding-promoter-TSS (FBgn0035714) -96 FBgn0035713 FBgn0035713 FBtr0076951 CG10107 protein_coding CTCF-S2-jox2017_R1_peak_1364 chrX 1899945 1900166 + 208 NA TTS (FBgn0264562) protein_coding-TTS (FBgn0264562) 3342 FBgn0023545 FBgn0023545 FBtr0070347 CG4406 protein_coding CTCF-S2-jox2017_R1_peak_1002 chr3R 15591760 15592195 + 207 NA intron (FBgn0024963, intron 10 of 12) protein_coding-intron (FBgn0024963, intron 10 of 11) 6970 FBgn0038730 FBgn0038730 FBtr0083798 CG6300 protein_coding CTCF-S2-jox2017_R1_peak_54 chr2L 5036158 5036441 + 207 NA intron (FBgn0000299, intron 8 of 8) protein_coding-intron (FBgn0000299, intron 8 of 8) -1754 FBgn0260451 FBgn0260451 FBtr0110984 CG14042 protein_coding CTCF-S2-jox2017_R1_peak_301 chr2R 5911381 5911639 + 207 NA intron (FBgn0022382, intron 2 of 9) protein_coding-intron (FBgn0022382, intron 2 of 9) 2037 FBgn0022382 FBgn0022382 FBtr0112902 Pka-R2 protein_coding CTCF-S2-jox2017_R1_peak_1549 chrX 18935253 18935494 + 206 NA Intergenic Intergenic -9133 FBgn0085358 FBgn0085358 FBtr0112531 Diedel3 protein_coding CTCF-S2-jox2017_R1_peak_915 chr3R 7369996 7370261 + 204 NA Intergenic Intergenic -7511 FBgn0053512 FBgn0053512 FBtr0300492 dpr4 protein_coding CTCF-S2-jox2017_R1_peak_456 chr2R 18204653 18204989 + 204 NA promoter-TSS (FBgn0013272) protein_coding-promoter-TSS (FBgn0013272) -5587 FBgn0013272 FBgn0013272 FBtr0071816 Gp150 protein_coding CTCF-S2-jox2017_R1_peak_96 chr2L 8485533 8485782 + 203 NA promoter-TSS (FBgn0263489) ncRNA-promoter-TSS (FBgn0263489) -68 FBgn0263489 FBgn0263489 FBtr0309788 unsRNA:d-a ncRNA CTCF-S2-jox2017_R1_peak_636 chr3L 10218368 10218697 + 203 NA promoter-TSS (FBgn0052056) protein_coding-promoter-TSS (FBgn0052056) -2172 FBgn0052056 FBgn0052056 FBtr0076303 scramb1 protein_coding CTCF-S2-jox2017_R1_peak_1006 chr3R 15892176 15892607 + 202 NA Intergenic Intergenic 8919 FBgn0038772 FBgn0038772 FBtr0083835 CG4973 protein_coding CTCF-S2-jox2017_R1_peak_402 chr2R 13029704 13029925 + 200 NA Intergenic Intergenic 1384 FBgn0065048 FBgn0065048 FBtr0091925 snoRNA:U3:54Aa snoRNA CTCF-S2-jox2017_R1_peak_1390 chrX 3999818 4000067 + 200 NA promoter-TSS (FBgn0026084) protein_coding-promoter-TSS (FBgn0026084) 1565 FBgn0000221 FBgn0000221 FBtr0070638 brn protein_coding CTCF-S2-jox2017_R1_peak_261 chr2R 2148834 2149128 + 199 NA Intergenic Intergenic 15940 FBgn0033075 FBgn0033075 FBtr0114492 Pld protein_coding CTCF-S2-jox2017_R1_peak_634 chr3L 10071770 10072000 + 198 NA intron (FBgn0040823, intron 6 of 6) protein_coding-intron (FBgn0040823, intron 6 of 6) 10615 FBgn0036066 FBgn0036066 FBtr0076316 CG14160 protein_coding CTCF-S2-jox2017_R1_peak_704 chr3L 15041312 15041585 + 198 NA TTS (FBgn0263761) protein_coding-TTS (FBgn0263761) 1147 FBgn0263761 FBgn0263761 FBtr0310458 CG43678 protein_coding CTCF-S2-jox2017_R1_peak_1100 chr3R 24913138 24913484 + 198 NA promoter-TSS (FBgn0039633) protein_coding-promoter-TSS (FBgn0039633) 23761 FBgn0039633 FBgn0039633 FBtr0330300 CG11873 protein_coding CTCF-S2-jox2017_R1_peak_1461 chrX 11576262 11576472 + 197 NA exon (FBgn0014133, exon 3 of 6) protein_coding-exon (FBgn0014133, exon 3 of 6) 3339 FBgn0014133 FBgn0014133 FBtr0073526 bif protein_coding CTCF-S2-jox2017_R1_peak_1440 chrX 9354984 9355207 + 197 NA intron (FBgn0261260, intron 2 of 2) protein_coding-intron (FBgn0261260, intron 2 of 14) 35126 FBgn0261260 FBgn0261260 FBtr0302154 mgl protein_coding CTCF-S2-jox2017_R1_peak_997 chr3R 14921928 14922235 + 196 NA promoter-TSS (FBgn0038679) protein_coding-promoter-TSS (FBgn0038679) 1367 FBgn0016120 FBgn0016120 FBtr0083728 ATPsyn-d protein_coding CTCF-S2-jox2017_R1_peak_666 chr3L 11869295 11869510 + 196 NA Intergenic Intergenic -2813 FBgn0036218 FBgn0036218 FBtr0300724 CG14128 protein_coding CTCF-S2-jox2017_R1_peak_144 chr2L 12373659 12374029 + 196 NA exon (FBgn0262475, exon 2 of 7) protein_coding-exon (FBgn0262475, exon 2 of 7) 17403 FBgn0032424 FBgn0032424 FBtr0080354 CG17010 protein_coding CTCF-S2-jox2017_R1_peak_749 chr3L 18398799 18399005 + 196 NA Intergenic Intergenic -7367 FBgn0011706 FBgn0011706 FBtr0075120 rpr protein_coding CTCF-S2-jox2017_R1_peak_693 chr3L 14349636 14349885 + 195 NA intron (FBgn0001085, intron 4 of 4) protein_coding-intron (FBgn0001085, intron 4 of 4) 13047 FBgn0036421 FBgn0036421 FBtr0113170 CG13481 protein_coding CTCF-S2-jox2017_R1_peak_760 chr3L 18961718 18961942 + 195 NA Intergenic Intergenic -16231 FBgn0036835 FBgn0036835 FBtr0075024 CG14075 protein_coding CTCF-S2-jox2017_R1_peak_1102 chr3R 25138923 25139164 + 194 NA Intergenic Intergenic 6293 FBgn0015622 FBgn0015622 FBtr0110909 Cnx99A protein_coding CTCF-S2-jox2017_R1_peak_942 chr3R 11263583 11264006 + 193 NA Intergenic Intergenic -1916 FBgn0000047 FBgn0000047 FBtr0083143 Act88F protein_coding CTCF-S2-jox2017_R1_peak_1231 chrUextra 11242087 11242267 + 193 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1283 chrUextra 26582212 26582475 + 192 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1026 chr3R 17234192 17234401 + 191 NA promoter-TSS (FBgn0051438) protein_coding-promoter-TSS (FBgn0051438) -549 FBgn0051438 FBgn0051438 FBtr0084090 CheB93b protein_coding CTCF-S2-jox2017_R1_peak_1384 chrX 3635130 3635418 + 191 NA intron (FBgn0086899, intron 1 of 7) protein_coding-intron (FBgn0086899, intron 1 of 7) -21609 FBgn0015286 FBgn0015286 FBtr0070584 Rala protein_coding CTCF-S2-jox2017_R1_peak_11 chr2L 541938 542313 + 191 NA TTS (FBgn0031260) protein_coding-TTS (FBgn0031260) 455 FBgn0010602 FBgn0010602 FBtr0310029 lwr protein_coding CTCF-S2-jox2017_R1_peak_726 chr3L 16889606 16889854 + 190 NA intron (FBgn0261565, intron 2 of 8) protein_coding-intron (FBgn0261565, intron 3 of 9) 9524 FBgn0261565 FBgn0261565 FBtr0302784 Lmpt protein_coding CTCF-S2-jox2017_R1_peak_229 chr2L 20488223 20488415 + 188 NA TTS (FBgn0262455) pre_miRNA-TTS (FBgn0262455) 823 FBgn0262455 FBgn0262455 FBtr0304488 mir-1 pre_miRNA CTCF-S2-jox2017_R1_peak_1505 chrX 15488567 15488809 + 187 NA Intergenic Intergenic -3727 FBgn0030662 FBgn0030662 FBtr0074064 CG9220 protein_coding CTCF-S2-jox2017_R1_peak_1267 chrUextra 23887272 23887417 + 187 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1518 chrX 16861532 16861935 + 187 NA exon (FBgn0030809, exon 2 of 11) protein_coding-exon (FBgn0030809, exon 2 of 11) 949 FBgn0030809 FBgn0030809 FBtr0308839 CG9086 protein_coding CTCF-S2-jox2017_R1_peak_1004 chr3R 15603902 15604115 + 187 NA promoter-TSS (FBgn0038732) protein_coding-promoter-TSS (FBgn0038732) -480 FBgn0038732 FBgn0038732 FBtr0083789 CG11391 protein_coding CTCF-S2-jox2017_R1_peak_466 chr2R 19145828 19146171 + 187 NA Intergenic Intergenic 7058 FBgn0034838 FBgn0034838 FBtr0072048 CG12782 protein_coding CTCF-S2-jox2017_R1_peak_1226 chrUextra 9848839 9849227 + 187 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1499 chrX 14975150 14975392 + 187 NA promoter-TSS (FBgn0053177) protein_coding-promoter-TSS (FBgn0053177) -311 FBgn0053177 FBgn0053177 FBtr0073962 CG33177 protein_coding CTCF-S2-jox2017_R1_peak_141 chr2L 12127392 12127829 + 186 NA exon (FBgn0032414, exon 5 of 6) protein_coding-exon (FBgn0032414, exon 5 of 6) 5757 FBgn0032415 FBgn0032415 FBtr0080360 rho-6 protein_coding CTCF-S2-jox2017_R1_peak_667 chr3L 11886025 11886225 + 185 NA Intergenic Intergenic -4044 FBgn0036220 FBgn0036220 FBtr0302207 CG5897 protein_coding CTCF-S2-jox2017_R1_peak_1211 chrUextra 5832187 5832480 + 185 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_898 chr3R 6029377 6029577 + 185 NA TTS (FBgn0025879) protein_coding-TTS (FBgn0025879) 9249 FBgn0025879 FBgn0025879 FBtr0082245 Timp protein_coding CTCF-S2-jox2017_R1_peak_1321 chrUextra 28737203 28737369 + 185 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1423 chrX 6627653 6627800 + 184 NA intron (FBgn0263415, intron 1 of 1) protein_coding-intron (FBgn0029896, intron 1 of 3) 976 FBgn0263415 FBgn0263415 FBtr0309201 CR43461 ncRNA CTCF-S2-jox2017_R1_peak_528 chr3L 2466565 2466827 + 184 NA promoter-TSS (FBgn0035347) protein_coding-promoter-TSS (FBgn0035347) 8918 FBgn0035343 FBgn0035343 FBtr0072968 CG16762 protein_coding CTCF-S2-jox2017_R1_peak_1093 chr3R 24370470 24370720 + 184 NA promoter-TSS (FBgn0039588) protein_coding-promoter-TSS (FBgn0039588) -71 FBgn0039588 FBgn0039588 FBtr0085293 CG12413 protein_coding CTCF-S2-jox2017_R1_peak_1565 chrX 21195267 21195494 + 184 NA promoter-TSS (FBgn0029067) protein_coding-promoter-TSS (FBgn0029067) 286 FBgn0031174 FBgn0031174 FBtr0077191 CG1486 protein_coding CTCF-S2-jox2017_R1_peak_350 chr2R 8553343 8553564 + 184 NA promoter-TSS (FBgn0261673) protein_coding-promoter-TSS (FBgn0261673) -151 FBgn0261673 FBgn0261673 FBtr0087868 nemy protein_coding CTCF-S2-jox2017_R1_peak_1397 chrX 4593501 4593695 + 184 NA TTS (FBgn0011760) protein_coding-TTS (FBgn0011760) -2798 FBgn0028325 FBgn0028325 FBtr0070711 l(1)G0334 protein_coding CTCF-S2-jox2017_R1_peak_317 chr2R 6442729 6443172 + 183 NA Intergenic Intergenic -2443 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding CTCF-S2-jox2017_R1_peak_105 chr2L 9567401 9567675 + 183 NA promoter-TSS (FBgn0032129) protein_coding-promoter-TSS (FBgn0032129) -2779 FBgn0032130 FBgn0032130 FBtr0079835 CG3838 protein_coding CTCF-S2-jox2017_R1_peak_328 chr2R 7297611 7297835 + 181 NA promoter-TSS (FBgn0050026) protein_coding-promoter-TSS (FBgn0050026) 220 FBgn0054054 FBgn0054054 FBtr0100109 CG34054 protein_coding CTCF-S2-jox2017_R1_peak_1373 chrX 2843768 2844044 + 180 NA TTS (FBgn0029648) protein_coding-TTS (FBgn0029648) 1839 FBgn0029648 FBgn0029648 FBtr0070558 CG3603 protein_coding CTCF-S2-jox2017_R1_peak_606 chr3L 7830906 7831139 + 178 NA intron (FBgn0016694, intron 1 of 5) protein_coding-intron (FBgn0016694, intron 1 of 4) -28097 FBgn0052369 FBgn0052369 FBtr0076783 CG32369 protein_coding CTCF-S2-jox2017_R1_peak_401 chr2R 13028899 13029164 + 178 NA promoter-TSS (FBgn0262567) protein_coding-promoter-TSS (FBgn0262567) -647 FBgn0262567 FBgn0262567 FBtr0304890 CG43107 protein_coding CTCF-S2-jox2017_R1_peak_462 chr2R 18984535 18984809 + 177 NA Intergenic Intergenic -2887 FBgn0034821 FBgn0034821 FBtr0071979 CG9876 protein_coding CTCF-S2-jox2017_R1_peak_1242 chrUextra 15572691 15572950 + 177 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_443 chr2R 17139124 17139356 + 176 NA promoter-TSS (FBgn0034606) protein_coding-promoter-TSS (FBgn0034606) -585 FBgn0034606 FBgn0034606 FBtr0071623 ASPP protein_coding CTCF-S2-jox2017_R1_peak_200 chr2L 18441317 18441546 + 176 NA TTS (FBgn0261597) protein_coding-TTS (FBgn0261597) 1797 FBgn0261597 FBgn0261597 FBtr0081090 RpS26 protein_coding CTCF-S2-jox2017_R1_peak_352 chr2R 9227699 9227920 + 175 NA Intergenic Intergenic -10863 FBgn0262391 FBgn0262391 FBtr0304273 mir-184 pre_miRNA CTCF-S2-jox2017_R1_peak_61 chr2L 6173062 6173257 + 173 NA Intergenic Intergenic -5974 FBgn0085409 FBgn0085409 FBtr0112617 CG34380 protein_coding CTCF-S2-jox2017_R1_peak_19 chr2L 1492286 1492585 + 172 NA exon (FBgn0051928, exon 1 of 1) protein_coding-exon (FBgn0051928, exon 1 of 1) 140 FBgn0051928 FBgn0051928 FBtr0077929 CG31928 protein_coding CTCF-S2-jox2017_R1_peak_703 chr3L 14935958 14936220 + 172 NA TTS (FBgn0040809) protein_coding-TTS (FBgn0040809) 1342 FBgn0040809 FBgn0040809 FBtr0075674 CG13465 protein_coding CTCF-S2-jox2017_R1_peak_62 chr2L 6221100 6221288 + 172 NA Intergenic Intergenic -3856 FBgn0026755 FBgn0026755 FBtr0079242 Ugt37b1 protein_coding CTCF-S2-jox2017_R1_peak_1530 chrX 17715652 17715866 + 172 NA exon (FBgn0030869, exon 9 of 9) protein_coding-exon (FBgn0030869, exon 9 of 9) -2041 FBgn0030868 FBgn0030868 FBtr0074474 CG12986 protein_coding CTCF-S2-jox2017_R1_peak_429 chr2R 16490771 16490958 + 171 NA intron (FBgn0015907, intron 1 of 2) protein_coding-intron (FBgn0015907, intron 6 of 8) -2722 FBgn0262370 FBgn0262370 FBtr0304181 mir-7 pre_miRNA CTCF-S2-jox2017_R1_peak_1454 chrX 10624484 10624640 + 170 NA intron (FBgn0052676, intron 1 of 3) protein_coding-intron (FBgn0052676, intron 1 of 3) -13973 FBgn0003204 FBgn0003204 FBtr0071496 ras protein_coding CTCF-S2-jox2017_R1_peak_583 chr3L 6543252 6543451 + 169 NA promoter-TSS (FBgn0042185) protein_coding-promoter-TSS (FBgn0042185) -487 FBgn0042185 FBgn0042185 FBtr0076974 CG18769 protein_coding CTCF-S2-jox2017_R1_peak_1078 chr3R 22355367 22355606 + 168 NA intron (FBgn0039431, intron 2 of 10) protein_coding-intron (FBgn0039431, intron 2 of 10) 5453 FBgn0039431 FBgn0039431 FBtr0302210 CG6490 protein_coding CTCF-S2-jox2017_R1_peak_910 chr3R 7069872 7070117 + 167 NA promoter-TSS (FBgn0037891) protein_coding-promoter-TSS (FBgn0037891) -12 FBgn0037891 FBgn0037891 FBtr0082358 CG5214 protein_coding CTCF-S2-jox2017_R1_peak_792 chr3L 21195672 21195869 + 167 NA promoter-TSS (FBgn0037057) protein_coding-promoter-TSS (FBgn0037057) 212 FBgn0053054 FBgn0053054 FBtr0078316 CG33054 protein_coding CTCF-S2-jox2017_R1_peak_207 chr2L 19245906 19246105 + 165 NA Intergenic Intergenic 16888 FBgn0051797 FBgn0051797 FBtr0081227 CG31797 protein_coding CTCF-S2-jox2017_R1_peak_790 chr3L 21042864 21043097 + 165 NA intron (FBgn0026179, intron 1 of 5) protein_coding-intron (FBgn0026179, intron 1 of 5) 1654 FBgn0026179 FBgn0026179 FBtr0111038 siz protein_coding CTCF-S2-jox2017_R1_peak_1257 chrUextra 22164634 22164973 + 165 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_962 chr3R 12660435 12660654 + 164 NA intron (FBgn0263610, intron 6 of 7) ncRNA-intron (FBgn0263610, intron 5 of 6) -4777 FBgn0000014 FBgn0000014 FBtr0083388 abd-A protein_coding CTCF-S2-jox2017_R1_peak_1080 chr3R 22692413 22692623 + 164 NA promoter-TSS (FBgn0001197) protein_coding-promoter-TSS (FBgn0001197) -87 FBgn0027889 FBgn0027889 FBtr0085096 ball protein_coding CTCF-S2-jox2017_R1_peak_793 chr3L 21278741 21278926 + 163 NA promoter-TSS (FBgn0259785) protein_coding-promoter-TSS (FBgn0259785) -297 FBgn0037065 FBgn0037065 FBtr0078410 CG12974 protein_coding CTCF-S2-jox2017_R1_peak_3 chr2L 247591 247800 + 161 NA intron (FBgn0086902, intron 1 of 16) protein_coding-intron (FBgn0086902, intron 1 of 17) 3128 FBgn0086902 FBgn0086902 FBtr0078145 kis protein_coding CTCF-S2-jox2017_R1_peak_829 chr3LHet 2100871 2101071 + 160 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_744 chr3L 18076573 18076784 + 160 NA intron (FBgn0262898, intron 2 of 2) protein_coding-intron (FBgn0262898, intron 2 of 2) 1732 FBgn0262898 FBgn0262898 FBtr0306318 CG43253 protein_coding CTCF-S2-jox2017_R1_peak_748 chr3L 18228628 18228804 + 159 NA Intergenic Intergenic -16472 FBgn0036783 FBgn0036783 FBtr0075129 CheA75a protein_coding CTCF-S2-jox2017_R1_peak_148 chr2L 12520251 12520630 + 159 NA intron (FBgn0259176, intron 5 of 7) protein_coding-intron (FBgn0259176, intron 5 of 7) 12332 FBgn0263458 FBgn0263458 FBtr0309757 snoRNA:CG43051-a snoRNA CTCF-S2-jox2017_R1_peak_687 chr3L 13950638 13950885 + 158 NA intron (FBgn0052137, intron 2 of 6) protein_coding-intron (FBgn0052137, intron 2 of 6) 7041 FBgn0025874 FBgn0025874 FBtr0333030 Meics protein_coding CTCF-S2-jox2017_R1_peak_303 chr2R 5989268 5989451 + 157 NA intron (FBgn0004907, intron 1 of 6) protein_coding-intron (FBgn0004907, intron 1 of 6) -2261 FBgn0004907 FBgn0004907 FBtr0332917 14-3-3zeta protein_coding CTCF-S2-jox2017_R1_peak_14 chr2L 819254 819451 + 157 NA promoter-TSS (FBgn0015621) protein_coding-promoter-TSS (FBgn0015621) 156 FBgn0031284 FBgn0031284 FBtr0078039 CG3876 protein_coding CTCF-S2-jox2017_R1_peak_610 chr3L 8442415 8442621 + 157 NA promoter-TSS (FBgn0010825) protein_coding-promoter-TSS (FBgn0010825) -41 FBgn0035896 FBgn0035896 FBtr0076659 CG6983 protein_coding CTCF-S2-jox2017_R1_peak_1426 chrX 7056625 7056877 + 156 NA intron (FBgn0029939, intron 1 of 5) protein_coding-intron (FBgn0029939, intron 1 of 5) -12868 FBgn0047092 FBgn0047092 FBtr0071016 CR32730 ncRNA CTCF-S2-jox2017_R1_peak_1158 chr4 522036 522251 + 156 NA promoter-TSS (FBgn0004607) protein_coding-promoter-TSS (FBgn0004607) -293 FBgn0004607 FBgn0004607 FBtr0332913 zfh2 protein_coding CTCF-S2-jox2017_R1_peak_982 chr3R 13705380 13705583 + 156 NA intron (FBgn0053547, intron 20 of 25) protein_coding-intron (FBgn0053547, intron 22 of 26) -26705 FBgn0038558 FBgn0038558 FBtr0308497 CG12347 protein_coding CTCF-S2-jox2017_R1_peak_613 chr3L 8711721 8711936 + 155 NA TTS (FBgn0011509) protein_coding-TTS (FBgn0011509) 1497 FBgn0011509 FBgn0011509 FBtr0076598 SrpRbeta protein_coding CTCF-S2-jox2017_R1_peak_1147 chr4 164520 164749 + 153 NA TTS (FBgn0052000) protein_coding-TTS (FBgn0052000) -6756 FBgn0052006 FBgn0052006 FBtr0089170 CG32006 protein_coding CTCF-S2-jox2017_R1_peak_179 chr2L 15949572 15949779 + 152 NA intron (FBgn0028645, intron 1 of 6) protein_coding-intron (FBgn0028645, intron 1 of 6) -8183 FBgn0028856 FBgn0028856 FBtr0300614 CG18063 protein_coding CTCF-S2-jox2017_R1_peak_1236 chrUextra 13217380 13217529 + 152 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_860 chr3R 2275640 2275901 + 152 NA Intergenic Intergenic 6601 FBgn0037445 FBgn0037445 FBtr0330192 CG9727 protein_coding CTCF-S2-jox2017_R1_peak_1509 chrX 15999855 16000054 + 152 NA Intergenic Intergenic -1009 FBgn0259699 FBgn0259699 FBtr0299953 CG42353 protein_coding CTCF-S2-jox2017_R1_peak_351 chr2R 8634523 8634711 + 151 NA intron (FBgn0261545, intron 5 of 8) protein_coding-intron (FBgn0261545, intron 4 of 7) 5824 FBgn0033773 FBgn0033773 FBtr0087865 mos protein_coding CTCF-S2-jox2017_R1_peak_403 chr2R 13101830 13102126 + 151 NA Intergenic Intergenic 9265 FBgn0262882 FBgn0262882 FBtr0306290 CG43237 protein_coding CTCF-S2-jox2017_R1_peak_681 chr3L 13383069 13383266 + 150 NA promoter-TSS (FBgn0036354) protein_coding-promoter-TSS (FBgn0036354) -61 FBgn0036354 FBgn0036354 FBtr0321318 Poc1 protein_coding CTCF-S2-jox2017_R1_peak_1372 chrX 2843290 2843471 + 149 NA TTS (FBgn0029648) protein_coding-TTS (FBgn0029648) 1313 FBgn0029648 FBgn0029648 FBtr0070558 CG3603 protein_coding CTCF-S2-jox2017_R1_peak_1407 chrX 5183810 5184018 + 149 NA Intergenic Intergenic -6213 FBgn0261803 FBgn0261803 FBtr0303279 CG42749 protein_coding CTCF-S2-jox2017_R1_peak_896 chr3R 5902477 5902690 + 149 NA Intergenic Intergenic -1488 FBgn0037786 FBgn0037786 FBtr0309853 CG5361 protein_coding CTCF-S2-jox2017_R1_peak_86 chr2L 7808958 7809183 + 149 NA intron (FBgn0031952, intron 1 of 6) protein_coding-intron (FBgn0031952, intron 1 of 6) 1627 FBgn0031952 FBgn0031952 FBtr0301331 cdc14 protein_coding CTCF-S2-jox2017_R1_peak_768 chr3L 19509719 19509934 + 147 NA TTS (FBgn0036878) protein_coding-TTS (FBgn0036878) 1606 FBgn0036878 FBgn0036878 FBtr0074977 Cpr76Ba protein_coding CTCF-S2-jox2017_R1_peak_1424 chrX 6899560 6899945 + 145 NA intron (FBgn0027106, intron 2 of 4) protein_coding-intron (FBgn0027106, intron 2 of 4) 5426 FBgn0000330 FBgn0000330 FBtr0071033 cm protein_coding CTCF-S2-jox2017_R1_peak_153 chr2L 13445598 13445827 + 145 NA promoter-TSS (FBgn0032524) protein_coding-promoter-TSS (FBgn0032524) -61 FBgn0032524 FBgn0032524 FBtr0080519 CG9267 protein_coding CTCF-S2-jox2017_R1_peak_1572 chrX 22226624 22226851 + 145 NA exon (FBgn0000719, exon 3 of 3) protein_coding-exon (FBgn0000719, exon 3 of 3) -7498 FBgn0259677 FBgn0259677 FBtr0333177 CG42346 protein_coding CTCF-S2-jox2017_R1_peak_155 chr2L 13500523 13500718 + 145 NA TTS (FBgn0263354) protein_coding-TTS (FBgn0263354) -27221 FBgn0053640 FBgn0053640 FBtr0332506 CG33640 protein_coding CTCF-S2-jox2017_R1_peak_1351 chrX 678519 678719 + 145 NA promoter-TSS (FBgn0086368) protein_coding-promoter-TSS (FBgn0086368) -205 FBgn0086368 FBgn0086368 FBtr0070139 tw protein_coding CTCF-S2-jox2017_R1_peak_1468 chrX 12434849 12435031 + 144 NA intron (FBgn0264542, intron 4 of 10) protein_coding-intron (FBgn0264542, intron 4 of 10) 6056 FBgn0264542 FBgn0264542 FBtr0333155 CG43921 protein_coding CTCF-S2-jox2017_R1_peak_493 chr2RHet 2781215 2781559 + 144 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_289 chr2R 4879888 4880085 + 143 NA Intergenic Intergenic -6923 FBgn0033359 FBgn0033359 FBtr0273385 CG8213 protein_coding CTCF-S2-jox2017_R1_peak_963 chr3R 12682798 12682999 + 143 NA promoter-TSS (FBgn0262290) pre_miRNA-promoter-TSS (FBgn0262290) 861 FBgn0262462 FBgn0262462 FBtr0304522 mir-iab-4 pre_miRNA CTCF-S2-jox2017_R1_peak_996 chr3R 14866577 14866745 + 141 NA exon (FBgn0038676, exon 2 of 3) protein_coding-exon (FBgn0038676, exon 2 of 3) 7405 FBgn0038676 FBgn0038676 FBtr0273301 CG6026 protein_coding CTCF-S2-jox2017_R1_peak_1553 chrX 19791578 19791765 + 141 NA intron (FBgn0052529, intron 1 of 5) protein_coding-intron (FBgn0052529, intron 4 of 8) -7578 FBgn0086782 FBgn0086782 FBtr0074802 amn protein_coding CTCF-S2-jox2017_R1_peak_349 chr2R 8486034 8486243 + 141 NA intron (FBgn0027356, intron 1 of 8) protein_coding-intron (FBgn0027356, intron 1 of 9) -3138 FBgn0264510 FBgn0264510 FBtr0333104 CR43909 ncRNA CTCF-S2-jox2017_R1_peak_1546 chrX 18682473 18682674 + 141 NA promoter-TSS (FBgn0004462) protein_coding-promoter-TSS (FBgn0004462) 74 FBgn0004462 FBgn0004462 FBtr0307198 Pk17E protein_coding CTCF-S2-jox2017_R1_peak_663 chr3L 11516489 11516686 + 141 NA promoter-TSS (FBgn0036170) protein_coding-promoter-TSS (FBgn0036170) -774 FBgn0036170 FBgn0036170 FBtr0331531 CG11714 protein_coding CTCF-S2-jox2017_R1_peak_1174 chrU 627591 627884 + 141 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_344 chr2R 8180680 8180934 + 141 NA exon (FBgn0261611, exon 2 of 9) protein_coding-exon (FBgn0261611, exon 2 of 9) 2513 FBgn0261611 FBgn0261611 FBtr0332924 CG42700 protein_coding CTCF-S2-jox2017_R1_peak_1478 chrX 13118986 13119210 + 141 NA exon (FBgn0004456, exon 3 of 9) protein_coding-exon (FBgn0004456, exon 3 of 9) 11501 FBgn0052639 FBgn0052639 FBtr0073734 CG32639 protein_coding CTCF-S2-jox2017_R1_peak_225 chr2L 20293974 20294201 + 139 NA promoter-TSS (FBgn0040996) protein_coding-promoter-TSS (FBgn0040996) -620 FBgn0040996 FBgn0040996 FBtr0081351 CG12617 protein_coding CTCF-S2-jox2017_R1_peak_113 chr2L 9759037 9759230 + 139 NA intron (FBgn0022720, intron 1 of 3) protein_coding-intron (FBgn0022720, intron 1 of 3) 795 FBgn0022720 FBgn0022720 FBtr0079865 zf30C protein_coding CTCF-S2-jox2017_R1_peak_1368 chrX 2550126 2550326 + 139 NA intron (FBgn0003371, intron 4 of 11) protein_coding-intron (FBgn0003371, intron 2 of 9) 13176 FBgn0003371 FBgn0003371 FBtr0112828 sgg protein_coding CTCF-S2-jox2017_R1_peak_1516 chrX 16531361 16531633 + 139 NA promoter-TSS (FBgn0026181) protein_coding-promoter-TSS (FBgn0026181) -45 FBgn0026181 FBgn0026181 FBtr0074286 rok protein_coding CTCF-S2-jox2017_R1_peak_1057 chr3R 20508687 20508944 + 138 NA intron (FBgn0003429, intron 8 of 25) protein_coding-intron (FBgn0003429, intron 8 of 24) 12729 FBgn0261637 FBgn0261637 FBtr0303007 CG42720 protein_coding CTCF-S2-jox2017_R1_peak_1304 chrUextra 28575402 28575611 + 138 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_237 chr2L 21683657 21684003 + 138 NA promoter-TSS (FBgn0051619) protein_coding-promoter-TSS (FBgn0051619) -352 FBgn0051619 FBgn0051619 FBtr0307497 CG31619 protein_coding CTCF-S2-jox2017_R1_peak_242 chr2L 22182159 22182368 + 138 NA intron (FBgn0032981, intron 1 of 2) protein_coding-intron (FBgn0032981, intron 1 of 2) 6848 FBgn0032981 FBgn0032981 FBtr0304739 CG3635 protein_coding CTCF-S2-jox2017_R1_peak_811 chr3L 24102585 24102730 + 137 NA intron (FBgn0011288, intron 2 of 6) protein_coding-intron (FBgn0011288, intron 2 of 7) 35328 FBgn0011288 FBgn0011288 FBtr0304626 Snap25 protein_coding CTCF-S2-jox2017_R1_peak_1512 chrX 16367976 16368163 + 137 NA intron (FBgn0264255, intron 27 of 30) protein_coding-intron (FBgn0264255, intron 27 of 30) 25359 FBgn0262734 FBgn0262734 FBtr0074281 Rbp2 protein_coding CTCF-S2-jox2017_R1_peak_952 chr3R 12070247 12070442 + 137 NA intron (FBgn0040071, intron 1 of 1) protein_coding-intron (FBgn0040071, intron 1 of 1) 1803 FBgn0040071 FBgn0040071 FBtr0083258 tara protein_coding CTCF-S2-jox2017_R1_peak_228 chr2L 20464444 20464625 + 136 NA Intergenic Intergenic -1090 FBgn0032864 FBgn0032864 FBtr0332970 CG2493 protein_coding CTCF-S2-jox2017_R1_peak_1036 chr3R 18481653 18481815 + 136 NA intron (FBgn0261572, intron 2 of 5) protein_coding-intron (FBgn0261572, intron 2 of 5) -10749 FBgn0039000 FBgn0039000 FBtr0306108 CG6954 protein_coding CTCF-S2-jox2017_R1_peak_1399 chrX 4957499 4957681 + 136 NA promoter-TSS (FBgn0003028) protein_coding-promoter-TSS (FBgn0003028) 15260 FBgn0003028 FBgn0003028 FBtr0100408 ovo protein_coding CTCF-S2-jox2017_R1_peak_1360 chrX 1519449 1519703 + 136 NA intron (FBgn0000210, intron 3 of 8) protein_coding-intron (FBgn0000210, intron 2 of 7) -7388 FBgn0025390 FBgn0025390 FBtr0070284 Mur2B protein_coding CTCF-S2-jox2017_R1_peak_212 chr2L 19398841 19399069 + 136 NA promoter-TSS (FBgn0032775) protein_coding-promoter-TSS (FBgn0032775) -463 FBgn0032775 FBgn0032775 FBtr0300822 CG17544 protein_coding CTCF-S2-jox2017_R1_peak_1014 chr3R 16734482 16734738 + 136 NA TTS (FBgn0038840) protein_coding-TTS (FBgn0038840) -3370 FBgn0044810 FBgn0044810 FBtr0083985 TotX protein_coding CTCF-S2-jox2017_R1_peak_721 chr3L 16556568 16556882 + 136 NA TTS (FBgn0026061) protein_coding-TTS (FBgn0026061) -3125 FBgn0262842 FBgn0262842 FBtr0306084 CG43206 protein_coding CTCF-S2-jox2017_R1_peak_461 chr2R 18962209 18962403 + 136 NA promoter-TSS (FBgn0034816) protein_coding-promoter-TSS (FBgn0034816) -46 FBgn0034816 FBgn0034816 FBtr0071963 CG3085 protein_coding CTCF-S2-jox2017_R1_peak_240 chr2L 21899139 21899730 + 136 NA Intergenic Intergenic -1145 FBgn0032965 FBgn0032965 FBtr0085950 CG11629 protein_coding CTCF-S2-jox2017_R1_peak_281 chr2R 4227655 4227854 + 135 NA intron (FBgn0261588, intron 1 of 10) protein_coding-intron (FBgn0261588, intron 1 of 10) 12749 FBgn0261588 FBgn0261588 FBtr0302918 pdm3 protein_coding CTCF-S2-jox2017_R1_peak_1085 chr3R 23251856 23252069 + 135 NA intron (FBgn0016061, intron 1 of 17) protein_coding-intron (FBgn0016061, intron 1 of 16) 11242 FBgn0016061 FBgn0016061 FBtr0289998 side protein_coding CTCF-S2-jox2017_R1_peak_570 chr3L 5476097 5476557 + 135 NA exon (FBgn0035607, exon 2 of 2) protein_coding-exon (FBgn0035607, exon 2 of 2) 3437 FBgn0035607 FBgn0035607 FBtr0333613 CG4835 protein_coding CTCF-S2-jox2017_R1_peak_2 chr2L 122373 122588 + 133 NA promoter-TSS (FBgn0031220) protein_coding-promoter-TSS (FBgn0031220) -1738 FBgn0031220 FBgn0031220 FBtr0330646 CG4822 protein_coding CTCF-S2-jox2017_R1_peak_868 chr3R 2801224 2801403 + 133 NA intron (FBgn0260642, intron 1 of 6) protein_coding-intron (FBgn0260642, intron 1 of 6) -42751 FBgn0260642 FBgn0260642 FBtr0081646 Antp protein_coding CTCF-S2-jox2017_R1_peak_187 chr2L 17201906 17202092 + 133 NA intron (FBgn0032629, intron 2 of 6) protein_coding-intron (FBgn0032629, intron 2 of 5) 20061 FBgn0046888 FBgn0046888 FBtr0080965 Gr36d protein_coding CTCF-S2-jox2017_R1_peak_55 chr2L 5036819 5036991 + 133 NA TTS (FBgn0000299) protein_coding-TTS (FBgn0000299) -1148 FBgn0260451 FBgn0260451 FBtr0110984 CG14042 protein_coding CTCF-S2-jox2017_R1_peak_1298 chrUextra 28422828 28423162 + 132 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_110 chr2L 9721754 9721912 + 132 NA intron (FBgn0028704, intron 5 of 8) protein_coding-intron (FBgn0028704, intron 5 of 7) -8107 FBgn0032139 FBgn0032139 FBtr0079863 CG13116 protein_coding CTCF-S2-jox2017_R1_peak_871 chr3R 2926129 2926307 + 131 NA exon (FBgn0261238, exon 4 of 6) protein_coding-exon (FBgn0261238, exon 4 of 6) 6458 FBgn0040670 FBgn0040670 FBtr0081562 e(y)2b protein_coding CTCF-S2-jox2017_R1_peak_1488 chrX 14479345 14479561 + 131 NA TTS (FBgn0030573) protein_coding-TTS (FBgn0030573) 1743 FBgn0030573 FBgn0030573 FBtr0073933 nmdyn-D6 protein_coding CTCF-S2-jox2017_R1_peak_137 chr2L 11940755 11941035 + 130 NA Intergenic Intergenic 2926 FBgn0026390 FBgn0026390 FBtr0080280 Or33c protein_coding CTCF-S2-jox2017_R1_peak_900 chr3R 6093840 6094046 + 130 NA intron (FBgn0262617, intron 1 of 13) protein_coding-intron (FBgn0262617, intron 1 of 11) 6109 FBgn0040078 FBgn0040078 FBtr0082226 pont protein_coding CTCF-S2-jox2017_R1_peak_1032 chr3R 17901517 17901724 + 130 NA intron (FBgn0264491, intron 8 of 8) protein_coding-intron (FBgn0264491, intron 8 of 8) -4484 FBgn0038929 FBgn0038929 FBtr0084179 CG13408 protein_coding CTCF-S2-jox2017_R1_peak_521 chr3L 1352215 1352479 + 130 NA TTS (FBgn0029514) protein_coding-TTS (FBgn0029514) 1231 FBgn0029514 FBgn0029514 FBtr0310160 CG9166 protein_coding CTCF-S2-jox2017_R1_peak_467 chr2R 19227218 19227418 + 130 NA Intergenic Intergenic -6840 FBgn0034846 FBgn0034846 FBtr0290285 CG9863 protein_coding CTCF-S2-jox2017_R1_peak_115 chr2L 9803703 9803944 + 128 NA intron (FBgn0032151, intron 9 of 13) protein_coding-intron (FBgn0032151, intron 9 of 13) -10716 FBgn0032150 FBgn0032150 FBtr0331286 CG13123 protein_coding CTCF-S2-jox2017_R1_peak_1018 chr3R 16809944 16810163 + 128 NA intron (FBgn0013995, intron 1 of 10) protein_coding-intron (FBgn0013995, intron 1 of 8) 3605 FBgn0263400 FBgn0263400 FBtr0309177 CG43446 protein_coding CTCF-S2-jox2017_R1_peak_536 chr3L 2939936 2940108 + 128 NA intron (FBgn0262593, intron 4 of 11) protein_coding-intron (FBgn0262593, intron 4 of 8) 11596 FBgn0052846 FBgn0052846 FBtr0304042 CG32846 protein_coding CTCF-S2-jox2017_R1_peak_845 chr3R 1042016 1042218 + 128 NA intron (FBgn0259212, intron 1 of 19) protein_coding-intron (FBgn0259212, intron 1 of 16) 1030 FBgn0259212 FBgn0259212 FBtr0299710 cno protein_coding CTCF-S2-jox2017_R1_peak_1062 chr3R 21019601 21019814 + 127 NA promoter-TSS (FBgn0083946) protein_coding-promoter-TSS (FBgn0083946) -209 FBgn0083946 FBgn0083946 FBtr0110797 lobo protein_coding CTCF-S2-jox2017_R1_peak_1250 chrUextra 18286302 18286560 + 127 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1469 chrX 12615636 12615832 + 127 NA intron (FBgn0264678, intron 1 of 1) protein_coding-intron (FBgn0263865, intron 2 of 9) -3241 FBgn0264678 FBgn0264678 FBtr0333775 CR43963 ncRNA CTCF-S2-jox2017_R1_peak_633 chr3L 9967367 9967569 + 126 NA promoter-TSS (FBgn0040823) protein_coding-promoter-TSS (FBgn0040823) -283 FBgn0040823 FBgn0040823 FBtr0076353 dpr6 protein_coding CTCF-S2-jox2017_R1_peak_652 chr3L 11033898 11034044 + 126 NA promoter-TSS (FBgn0263776) protein_coding-promoter-TSS (FBgn0263776) 10500 FBgn0263776 FBgn0263776 FBtr0310568 CG43693 protein_coding CTCF-S2-jox2017_R1_peak_639 chr3L 10264797 10265219 + 126 NA Intergenic Intergenic -1296 FBgn0036080 FBgn0036080 FBtr0076297 Or67d protein_coding CTCF-S2-jox2017_R1_peak_1152 chr4 396798 396997 + 126 NA exon (FBgn0262636, exon 10 of 10) protein_coding-exon (FBgn0262636, exon 10 of 10) 16294 FBgn0039904 FBgn0039904 FBtr0307379 Hcf protein_coding CTCF-S2-jox2017_R1_peak_919 chr3R 8104956 8105133 + 126 NA intron (FBgn0003651, intron 1 of 4) protein_coding-intron (FBgn0003651, intron 1 of 4) -1830 FBgn0003651 FBgn0003651 FBtr0331183 svp protein_coding CTCF-S2-jox2017_R1_peak_1395 chrX 4448178 4448411 + 126 NA promoter-TSS (FBgn0029715) protein_coding-promoter-TSS (FBgn0029715) -68 FBgn0029715 FBgn0029715 FBtr0070698 CG11444 protein_coding CTCF-S2-jox2017_R1_peak_548 chr3L 3769166 3769454 + 126 NA exon (FBgn0052264, exon 3 of 12) protein_coding-exon (FBgn0052264, exon 3 of 12) -14109 FBgn0035458 FBgn0035458 FBtr0303094 CG10858 protein_coding CTCF-S2-jox2017_R1_peak_1069 chr3R 21525168 21525344 + 126 NA exon (FBgn0051092, exon 11 of 11) protein_coding-exon (FBgn0051092, exon 11 of 11) -12164 FBgn0039360 FBgn0039360 FBtr0084931 CLS protein_coding CTCF-S2-jox2017_R1_peak_120 chr2L 10053660 10053969 + 126 NA promoter-TSS (FBgn0053302) protein_coding-promoter-TSS (FBgn0053302) -401 FBgn0053302 FBgn0053302 FBtr0079936 Cpr31A protein_coding CTCF-S2-jox2017_R1_peak_1324 chrUextra 28746040 28746249 + 126 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_599 chr3L 7349491 7349736 + 125 NA TTS (FBgn0035770) protein_coding-TTS (FBgn0035770) 200 FBgn0035769 FBgn0035769 FBtr0076878 CTCF protein_coding CTCF-S2-jox2017_R1_peak_161 chr2L 14161265 14162157 + 125 NA exon (FBgn0263037, exon 2 of 2) protein_coding-exon (FBgn0263037, exon 2 of 2) 1511 FBgn0263037 FBgn0263037 FBtr0306928 CG43332 protein_coding CTCF-S2-jox2017_R1_peak_176 chr2L 15504654 15504845 + 125 NA exon (FBgn0002524, exon 4 of 4) protein_coding-exon (FBgn0002524, exon 4 of 4) 5639 FBgn0002524 FBgn0002524 FBtr0080738 lace protein_coding CTCF-S2-jox2017_R1_peak_643 chr3L 10501188 10501357 + 124 NA intron (FBgn0052062, intron 2 of 13) protein_coding-intron (FBgn0052062, intron 2 of 16) -7831 FBgn0052062 FBgn0052062 FBtr0305094 A2bp1 protein_coding CTCF-S2-jox2017_R1_peak_375 chr2R 11023862 11024021 + 124 NA intron (FBgn0015371, intron 1 of 5) protein_coding-intron (FBgn0015371, intron 1 of 4) 9083 FBgn0262954 FBgn0262954 FBtr0112379 Rpb12 protein_coding CTCF-S2-jox2017_R1_peak_65 chr2L 6338644 6338847 + 124 NA promoter-TSS (FBgn0015623) protein_coding-promoter-TSS (FBgn0015623) -74 FBgn0031799 FBgn0031799 FBtr0079284 Pez protein_coding CTCF-S2-jox2017_R1_peak_59 chr2L 5725775 5725991 + 124 NA TTS (FBgn0031733) protein_coding-TTS (FBgn0031733) 1227 FBgn0031736 FBgn0031736 FBtr0079135 CG11030 protein_coding CTCF-S2-jox2017_R1_peak_618 chr3L 9040396 9040628 + 124 NA promoter-TSS (FBgn0035957) protein_coding-promoter-TSS (FBgn0035957) -27 FBgn0035957 FBgn0035957 FBtr0076523 CG5144 protein_coding CTCF-S2-jox2017_R1_peak_1181 chrU 2149628 2149887 + 123 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1166 chrU 89210 89436 + 123 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1204 chrUextra 3080784 3081242 + 123 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1252 chrUextra 19108655 19108919 + 123 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_308 chr2R 6283422 6283582 + 122 NA promoter-TSS (FBgn0261698) protein_coding-promoter-TSS (FBgn0261698) 11448 FBgn0033516 FBgn0033516 FBtr0088321 CG12898 protein_coding CTCF-S2-jox2017_R1_peak_1377 chrX 3237826 3238077 + 122 NA TTS (FBgn0000479) protein_coding-TTS (FBgn0000479) -27516 FBgn0029656 FBgn0029656 FBtr0070536 CG10793 protein_coding CTCF-S2-jox2017_R1_peak_847 chr3R 1109061 1109227 + 122 NA promoter-TSS (FBgn0013576) protein_coding-promoter-TSS (FBgn0013576) -5587 FBgn0051538 FBgn0051538 FBtr0078819 CG31538 protein_coding CTCF-S2-jox2017_R1_peak_985 chr3R 13718510 13718715 + 122 NA intron (FBgn0053547, intron 8 of 24) protein_coding-intron (FBgn0053547, intron 9 of 26) -13574 FBgn0038558 FBgn0038558 FBtr0308497 CG12347 protein_coding CTCF-S2-jox2017_R1_peak_491 chr2RHet 548188 548430 + 122 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_547 chr3L 3767851 3768136 + 121 NA intron (FBgn0052264, intron 3 of 9) protein_coding-intron (FBgn0052264, intron 4 of 11) -12792 FBgn0035458 FBgn0035458 FBtr0303094 CG10858 protein_coding CTCF-S2-jox2017_R1_peak_82 chr2L 7423538 7423704 + 120 NA promoter-TSS (FBgn0264439) ncRNA-promoter-TSS (FBgn0264439) -199 FBgn0264439 FBgn0264439 FBtr0332525 CR43857 ncRNA CTCF-S2-jox2017_R1_peak_680 chr3L 13264443 13264629 + 120 NA intron (FBgn0023095, intron 4 of 4) protein_coding-intron (FBgn0023095, intron 4 of 4) -8340 FBgn0052123 FBgn0052123 FBtr0075835 tRNA:CR32123:Psi pseudogene CTCF-S2-jox2017_R1_peak_835 chr3R 223241 223446 + 120 NA TTS (FBgn0086605) protein_coding-TTS (FBgn0086605) 266 FBgn0037242 FBgn0037242 FBtr0078950 CG9855 protein_coding CTCF-S2-jox2017_R1_peak_287 chr2R 4543236 4543410 + 120 NA intron (FBgn0003892, intron 1 of 5) protein_coding-intron (FBgn0003892, intron 1 of 5) 6183 FBgn0003892 FBgn0003892 FBtr0089427 ptc protein_coding CTCF-S2-jox2017_R1_peak_587 chr3L 6736710 6737012 + 120 NA promoter-TSS (FBgn0261934) protein_coding-promoter-TSS (FBgn0261934) -597 FBgn0261934 FBgn0261934 FBtr0303748 dikar protein_coding CTCF-S2-jox2017_R1_peak_392 chr2R 12216594 12216822 + 120 NA intron (FBgn0262511, intron 4 of 10) protein_coding-intron (FBgn0262511, intron 3 of 8) 7015 FBgn0034114 FBgn0034114 FBtr0087144 CG4282 protein_coding CTCF-S2-jox2017_R1_peak_379 chr2R 11259007 11259266 + 119 NA promoter-TSS (FBgn0011660) protein_coding-promoter-TSS (FBgn0011660) -115 FBgn0011660 FBgn0011660 FBtr0087388 Pms2 protein_coding CTCF-S2-jox2017_R1_peak_1296 chrUextra 28342776 28343039 + 119 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1271 chrUextra 24405961 24406216 + 119 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_753 chr3L 18779470 18779711 + 119 NA intron (FBgn0001078, intron 2 of 9) protein_coding-intron (FBgn0001078, intron 2 of 9) -20746 FBgn0001078 FBgn0001078 FBtr0075087 ftz-f1 protein_coding CTCF-S2-jox2017_R1_peak_1273 chrUextra 25124582 25124850 + 118 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1148 chr4 165178 165392 + 118 NA Intergenic Intergenic -6105 FBgn0052006 FBgn0052006 FBtr0089170 CG32006 protein_coding CTCF-S2-jox2017_R1_peak_1234 chrUextra 12698838 12699089 + 118 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1334 chrUextra 28878760 28879017 + 118 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1431 chrX 7487189 7487359 + 117 NA Intergenic Intergenic -7110 FBgn0029952 FBgn0029952 FBtr0305135 CG12689 protein_coding CTCF-S2-jox2017_R1_peak_428 chr2R 16218235 16218395 + 117 NA TTS (FBgn0034504) protein_coding-TTS (FBgn0034504) 3543 FBgn0034504 FBgn0034504 FBtr0086285 CG8929 protein_coding CTCF-S2-jox2017_R1_peak_517 chr3L 976022 976170 + 117 NA intron (FBgn0264574, intron 8 of 14) protein_coding-intron (FBgn0264574, intron 2 of 10) 16436 FBgn0264574 FBgn0264574 FBtr0333507 Glut1 protein_coding CTCF-S2-jox2017_R1_peak_449 chr2R 17588295 17588467 + 117 NA intron (FBgn0010228, intron 1 of 2) protein_coding-intron (FBgn0010228, intron 1 of 2) 2032 FBgn0010228 FBgn0010228 FBtr0071674 HmgZ protein_coding CTCF-S2-jox2017_R1_peak_1371 chrX 2763636 2763876 + 117 NA intron (FBgn0028369, intron 3 of 11) protein_coding-intron (FBgn0028369, intron 3 of 12) 3130 FBgn0040352 FBgn0040352 FBtr0070567 CG14416 protein_coding CTCF-S2-jox2017_R1_peak_381 chr2R 11399143 11399321 + 117 NA promoter-TSS (FBgn0034025) protein_coding-promoter-TSS (FBgn0034025) -85 FBgn0034025 FBgn0034025 FBtr0087332 GalNAc-T1 protein_coding CTCF-S2-jox2017_R1_peak_121 chr2L 10124009 10124469 + 117 NA intron (FBgn0083945, intron 12 of 12) protein_coding-intron (FBgn0083945, intron 12 of 12) -1468 FBgn0032184 FBgn0032184 FBtr0079966 CG13135 protein_coding CTCF-S2-jox2017_R1_peak_357 chr2R 9697248 9697401 + 116 NA intron (FBgn0261041, intron 5 of 21) protein_coding-intron (FBgn0261041, intron 5 of 20) 4345 FBgn0261041 FBgn0261041 FBtr0304695 stj protein_coding CTCF-S2-jox2017_R1_peak_1161 chr4 831164 831337 + 116 NA intron (FBgn0039938, intron 3 of 4) protein_coding-intron (FBgn0039938, intron 3 of 4) 11191 FBgn0039939 FBgn0039939 FBtr0089242 CG11231 protein_coding CTCF-S2-jox2017_R1_peak_241 chr2L 21904225 21904663 + 116 NA TTS (FBgn0032966) protein_coding-TTS (FBgn0032966) 1382 FBgn0032966 FBgn0032966 FBtr0085928 CG1421 protein_coding CTCF-S2-jox2017_R1_peak_220 chr2L 19896321 19896487 + 116 NA intron (FBgn0263873, intron 1 of 13) protein_coding-intron (FBgn0263873, intron 4 of 15) -3854 FBgn0032827 FBgn0032827 FBtr0081312 CG10481 protein_coding CTCF-S2-jox2017_R1_peak_1091 chr3R 24223073 24223265 + 116 NA Intergenic Intergenic -20761 FBgn0039584 FBgn0039584 FBtr0085289 beat-VI protein_coding CTCF-S2-jox2017_R1_peak_414 chr2R 14526735 14526923 + 116 NA promoter-TSS (FBgn0050227) tRNA-promoter-TSS (FBgn0050227) -233 FBgn0050227 FBgn0050227 FBtr0086603 tRNA:CR30227 tRNA CTCF-S2-jox2017_R1_peak_132 chr2L 11802010 11802220 + 116 NA intron (FBgn0020309, intron 4 of 7) protein_coding-intron (FBgn0020309, intron 4 of 7) -3920 FBgn0086036 FBgn0086036 FBtr0114312 snoRNA:Me18S-A934 snoRNA CTCF-S2-jox2017_R1_peak_336 chr2R 7639718 7639882 + 116 NA Intergenic Intergenic -16158 FBgn0033650 FBgn0033650 FBtr0088029 CG13193 protein_coding CTCF-S2-jox2017_R1_peak_913 chr3R 7219650 7219879 + 116 NA exon (FBgn0004595, exon 8 of 8) protein_coding-exon (FBgn0004595, exon 8 of 8) -13855 FBgn0037892 FBgn0037892 FBtr0082384 mRpL40 protein_coding CTCF-S2-jox2017_R1_peak_363 chr2R 10186447 10186595 + 115 NA TTS (FBgn0263397) protein_coding-TTS (FBgn0263397) 3337 FBgn0033921 FBgn0033921 FBtr0087562 tej protein_coding CTCF-S2-jox2017_R1_peak_1447 chrX 9903885 9904364 + 115 NA promoter-TSS (FBgn0030170) protein_coding-promoter-TSS (FBgn0030170) -412 FBgn0030170 FBgn0030170 FBtr0112971 CG2990 protein_coding CTCF-S2-jox2017_R1_peak_1230 chrUextra 10890886 10891132 + 114 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_885 chr3R 4805651 4805825 + 113 NA promoter-TSS (FBgn0037646) protein_coding-promoter-TSS (FBgn0037646) -846 FBgn0037646 FBgn0037646 FBtr0081958 CAHbeta protein_coding CTCF-S2-jox2017_R1_peak_1337 chrUextra 28898978 28899199 + 113 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_95 chr2L 8428040 8428200 + 113 NA exon (FBgn0027932, exon 4 of 5) protein_coding-exon (FBgn0027932, exon 4 of 5) 5478 FBgn0001137 FBgn0001137 FBtr0079708 grk protein_coding CTCF-S2-jox2017_R1_peak_1532 chrX 17818657 17818808 + 113 NA TTS (FBgn0030884) protein_coding-TTS (FBgn0030884) 13236 FBgn0030884 FBgn0030884 FBtr0074505 CG6847 protein_coding CTCF-S2-jox2017_R1_peak_657 chr3L 11308393 11308667 + 113 NA Intergenic Intergenic 3683 FBgn0036153 FBgn0036153 FBtr0076171 CG7573 protein_coding CTCF-S2-jox2017_R1_peak_435 chr2R 16719910 16720098 + 113 NA promoter-TSS (FBgn0016984) protein_coding-promoter-TSS (FBgn0016984) -85 FBgn0016984 FBgn0016984 FBtr0071563 sktl protein_coding CTCF-S2-jox2017_R1_peak_101 chr2L 9342045 9342271 + 112 NA promoter-TSS (FBgn0032110) protein_coding-promoter-TSS (FBgn0032110) -674 FBgn0032110 FBgn0032110 FBtr0079803 CG3748 protein_coding CTCF-S2-jox2017_R1_peak_1269 chrUextra 24282094 24282388 + 112 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_839 chr3R 627860 628005 + 112 NA promoter-TSS (FBgn0260794) protein_coding-promoter-TSS (FBgn0260794) 9851 FBgn0026417 FBgn0026417 FBtr0078876 Hus1-like protein_coding CTCF-S2-jox2017_R1_peak_309 chr2R 6290399 6290556 + 112 NA intron (FBgn0261698, intron 2 of 27) protein_coding-intron (FBgn0261698, intron 2 of 27) 4473 FBgn0033516 FBgn0033516 FBtr0088321 CG12898 protein_coding CTCF-S2-jox2017_R1_peak_128 chr2L 11172057 11172231 + 112 NA promoter-TSS (FBgn0014076) protein_coding-promoter-TSS (FBgn0014076) -479 FBgn0014076 FBgn0014076 FBtr0080216 Vm32E protein_coding CTCF-S2-jox2017_R1_peak_270 chr2R 3074067 3074249 + 112 NA promoter-TSS (FBgn0003090) protein_coding-promoter-TSS (FBgn0003090) -609 FBgn0003090 FBgn0003090 FBtr0089044 pk protein_coding CTCF-S2-jox2017_R1_peak_334 chr2R 7500615 7500837 + 112 NA intron (FBgn0033636, intron 1 of 16) protein_coding-intron (FBgn0033636, intron 1 of 16) -2974 FBgn0264508 FBgn0264508 FBtr0333069 CR43907 ncRNA CTCF-S2-jox2017_R1_peak_718 chr3L 16157709 16157945 + 111 NA promoter-TSS (FBgn0036576) protein_coding-promoter-TSS (FBgn0036576) -26 FBgn0036576 FBgn0036576 FBtr0307519 CG5151 protein_coding CTCF-S2-jox2017_R1_peak_422 chr2R 15520400 15520628 + 110 NA Intergenic Intergenic -2270 FBgn0261807 FBgn0261807 FBtr0303283 CG42753 protein_coding CTCF-S2-jox2017_R1_peak_696 chr3L 14544424 14544606 + 110 NA promoter-TSS (FBgn0036428) protein_coding-promoter-TSS (FBgn0036428) -440 FBgn0036428 FBgn0036428 FBtr0075723 CG9238 protein_coding CTCF-S2-jox2017_R1_peak_1555 chrX 20223600 20223759 + 110 NA Intergenic Intergenic 23870 FBgn0031103 FBgn0031103 FBtr0077332 CG12679 protein_coding CTCF-S2-jox2017_R1_peak_979 chr3R 13559137 13559359 + 110 NA promoter-TSS (FBgn0038540) protein_coding-promoter-TSS (FBgn0038540) -74 FBgn0038540 FBgn0038540 FBtr0083511 CG14321 protein_coding CTCF-S2-jox2017_R1_peak_1081 chr3R 22782168 22782417 + 110 NA exon (FBgn0039464, exon 2 of 6) protein_coding-exon (FBgn0039464, exon 2 of 6) -3317 FBgn0039464 FBgn0039464 FBtr0085085 CG6330 protein_coding CTCF-S2-jox2017_R1_peak_1285 chrUextra 27225261 27225427 + 110 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_389 chr2R 11738847 11739112 + 109 NA intron (FBgn0034046, intron 1 of 4) protein_coding-intron (FBgn0034046, intron 1 of 4) 2868 FBgn0034046 FBgn0034046 FBtr0087287 tun protein_coding CTCF-S2-jox2017_R1_peak_197 chr2L 18294513 18294712 + 108 NA promoter-TSS (FBgn0032677) protein_coding-promoter-TSS (FBgn0032677) -292 FBgn0032677 FBgn0032677 FBtr0081050 CG5790 protein_coding CTCF-S2-jox2017_R1_peak_129 chr2L 11318519 11318730 + 108 NA Intergenic Intergenic 10871 FBgn0263874 FBgn0263874 FBtr0329848 CR43721 ncRNA CTCF-S2-jox2017_R1_peak_1356 chrX 1130700 1130921 + 108 NA promoter-TSS (FBgn0261444) protein_coding-promoter-TSS (FBgn0261444) -93 FBgn0261444 FBgn0261444 FBtr0330205 CG3638 protein_coding CTCF-S2-jox2017_R1_peak_343 chr2R 8162125 8162300 + 108 NA TTS (FBgn0000253) protein_coding-TTS (FBgn0000253) 10147 FBgn0000253 FBgn0000253 FBtr0088002 Cam protein_coding CTCF-S2-jox2017_R1_peak_538 chr3L 3185722 3185911 + 107 NA promoter-TSS (FBgn0052284) protein_coding-promoter-TSS (FBgn0052284) -848 FBgn0052284 FBgn0052284 FBtr0073037 CG32284 protein_coding CTCF-S2-jox2017_R1_peak_1239 chrUextra 14301896 14302165 + 107 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_20 chr2L 1697699 1697880 + 107 NA TTS (FBgn0086758) protein_coding-TTS (FBgn0086758) -7342 FBgn0011570 FBgn0011570 FBtr0331630 cpb protein_coding CTCF-S2-jox2017_R1_peak_1441 chrX 9444972 9445205 + 107 NA TTS (FBgn0028327) protein_coding-TTS (FBgn0028327) 174 FBgn0052700 FBgn0052700 FBtr0071374 CG32700 protein_coding CTCF-S2-jox2017_R1_peak_1320 chrUextra 28735872 28736134 + 106 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_995 chr3R 14839845 14840028 + 106 NA intron (FBgn0026239, intron 4 of 4) protein_coding-intron (FBgn0026239, intron 4 of 4) 9808 FBgn0038672 FBgn0038672 FBtr0083719 CG6005 protein_coding CTCF-S2-jox2017_R1_peak_1088 chr3R 23596375 23596571 + 106 NA intron (FBgn0085382, intron 11 of 11) protein_coding-intron (FBgn0085382, intron 11 of 11) 34211 FBgn0005659 FBgn0005659 FBtr0085224 Ets98B protein_coding CTCF-S2-jox2017_R1_peak_204 chr2L 18839052 18839230 + 106 NA TTS (FBgn0051752) protein_coding-TTS (FBgn0051752) 538 FBgn0032717 FBgn0032717 FBtr0081120 CG10600 protein_coding CTCF-S2-jox2017_R1_peak_206 chr2L 18974252 18974429 + 106 NA promoter-TSS (FBgn0032730) protein_coding-promoter-TSS (FBgn0032730) 108 FBgn0032729 FBgn0032729 FBtr0081186 CG10639 protein_coding CTCF-S2-jox2017_R1_peak_1024 chr3R 17078300 17078481 + 106 NA intron (FBgn0038874, intron 1 of 4) protein_coding-intron (FBgn0038874, intron 1 of 4) 5364 FBgn0038874 FBgn0038874 FBtr0084054 ETHR protein_coding CTCF-S2-jox2017_R1_peak_497 chr2RHet 3058646 3059005 + 106 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_645 chr3L 10843206 10843357 + 106 NA Intergenic Intergenic -8223 FBgn0026160 FBgn0026160 FBtr0076268 tna protein_coding CTCF-S2-jox2017_R1_peak_751 chr3L 18660312 18660530 + 105 NA promoter-TSS (FBgn0260027) protein_coding-promoter-TSS (FBgn0260027) -40 FBgn0260027 FBgn0260027 FBtr0300582 CG42495 protein_coding CTCF-S2-jox2017_R1_peak_156 chr2L 13732356 13732618 + 105 NA Intergenic Intergenic -3653 FBgn0051813 FBgn0051813 FBtr0080531 CG31813 protein_coding CTCF-S2-jox2017_R1_peak_1169 chrU 221881 222047 + 104 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_806 chr3L 23656358 23656567 + 104 NA intron (FBgn0250816, intron 7 of 7) protein_coding-intron (FBgn0250816, intron 7 of 7) -51929 FBgn0039977 FBgn0039977 FBtr0333911 CG17454 protein_coding CTCF-S2-jox2017_R1_peak_377 chr2R 11132470 11132774 + 104 NA Intergenic Intergenic -3538 FBgn0259878 FBgn0259878 FBtr0087398 Fs protein_coding CTCF-S2-jox2017_R1_peak_1568 chrX 21233983 21234167 + 104 NA promoter-TSS (FBgn0024182) protein_coding-promoter-TSS (FBgn0024182) 20 FBgn0024182 FBgn0024182 FBtr0100536 waw protein_coding CTCF-S2-jox2017_R1_peak_1413 chrX 5556084 5556268 + 104 NA exon (FBgn0259150, exon 2 of 7) protein_coding-exon (FBgn0259150, exon 2 of 7) 699 FBgn0259150 FBgn0259150 FBtr0331168 CG42265 protein_coding CTCF-S2-jox2017_R1_peak_1492 chrX 14804023 14804304 + 104 NA exon (FBgn0030595, exon 2 of 2) protein_coding-exon (FBgn0030595, exon 2 of 2) 715 FBgn0030595 FBgn0030595 FBtr0073977 CG14406 protein_coding CTCF-S2-jox2017_R1_peak_668 chr3L 11996067 11996351 + 104 NA promoter-TSS (FBgn0036240) protein_coding-promoter-TSS (FBgn0036240) -46 FBgn0036240 FBgn0036240 FBtr0332709 CG6928 protein_coding CTCF-S2-jox2017_R1_peak_545 chr3L 3678451 3678664 + 103 NA Intergenic Intergenic -10229 FBgn0263495 FBgn0263495 FBtr0309509 CR43484 ncRNA CTCF-S2-jox2017_R1_peak_50 chr2L 4643183 4643357 + 103 NA TTS (FBgn0083938) protein_coding-TTS (FBgn0083938) 298 FBgn0031617 FBgn0031617 FBtr0300354 CG15635 protein_coding CTCF-S2-jox2017_R1_peak_767 chr3L 19402239 19402404 + 103 NA intron (FBgn0052206, intron 1 of 13) protein_coding-intron (FBgn0052206, intron 1 of 13) 3682 FBgn0264697 FBgn0264697 FBtr0333868 CR43966 ncRNA CTCF-S2-jox2017_R1_peak_738 chr3L 17795324 17795485 + 103 NA promoter-TSS (FBgn0052190) protein_coding-promoter-TSS (FBgn0052190) -25 FBgn0052190 FBgn0052190 FBtr0075171 NUCB1 protein_coding CTCF-S2-jox2017_R1_peak_1119 chr3R 26615156 26615361 + 103 NA TTS (FBgn0011739) protein_coding-TTS (FBgn0011739) 2122 FBgn0262444 FBgn0262444 FBtr0304453 mir-1013 pre_miRNA CTCF-S2-jox2017_R1_peak_822 chr3LHet 822573 822796 + 102 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1035 chr3R 18390488 18390691 + 102 NA Intergenic Intergenic -2296 FBgn0038986 FBgn0038986 FBtr0084281 CG5278 protein_coding CTCF-S2-jox2017_R1_peak_840 chr3R 671064 671224 + 102 NA Intergenic Intergenic -7391 FBgn0003002 FBgn0003002 FBtr0078836 opa protein_coding CTCF-S2-jox2017_R1_peak_1366 chrX 2233998 2234171 + 102 NA promoter-TSS (FBgn0003079) protein_coding-promoter-TSS (FBgn0003079) 4598 FBgn0040389 FBgn0040389 FBtr0070405 mRpL14 protein_coding CTCF-S2-jox2017_R1_peak_1561 chrX 20639913 20640091 + 102 NA exon (FBgn0085387, exon 10 of 10) protein_coding-exon (FBgn0085387, exon 10 of 10) -8022 FBgn0264390 FBgn0264390 FBtr0332284 CR43838 ncRNA CTCF-S2-jox2017_R1_peak_559 chr3L 4513931 4514177 + 102 NA exon (FBgn0014073, exon 3 of 6) protein_coding-exon (FBgn0014073, exon 3 of 6) -5621 FBgn0261526 FBgn0261526 FBtr0301520 NT1 protein_coding CTCF-S2-jox2017_R1_peak_992 chr3R 14544473 14544645 + 101 NA TTS (FBgn0015323) protein_coding-TTS (FBgn0015323) 3685 FBgn0085312 FBgn0085312 FBtr0112479 CG34283 protein_coding CTCF-S2-jox2017_R1_peak_1307 chrUextra 28583670 28583815 + 101 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_761 chr3L 19056147 19056300 + 101 NA promoter-TSS (FBgn0036843) protein_coding-promoter-TSS (FBgn0036843) -42 FBgn0036843 FBgn0036843 FBtr0075025 CG6812 protein_coding CTCF-S2-jox2017_R1_peak_117 chr2L 9813926 9814096 + 101 NA intron (FBgn0032151, intron 6 of 13) protein_coding-intron (FBgn0032151, intron 5 of 13) -20904 FBgn0032150 FBgn0032150 FBtr0331286 CG13123 protein_coding CTCF-S2-jox2017_R1_peak_190 chr2L 17465983 17466159 + 101 NA intron (FBgn0000183, intron 1 of 7) protein_coding-intron (FBgn0000183, intron 1 of 7) -5532 FBgn0032640 FBgn0032640 FBtr0080982 Sgt protein_coding CTCF-S2-jox2017_R1_peak_941 chr3R 11242169 11242335 + 101 NA TTS (FBgn0041188) protein_coding-TTS (FBgn0041188) 903 FBgn0262367 FBgn0262367 FBtr0304170 mir-13b-1 pre_miRNA CTCF-S2-jox2017_R1_peak_269 chr2R 3027129 3027386 + 101 NA Intergenic Intergenic -7617 FBgn0015039 FBgn0015039 FBtr0089055 Cyp9b2 protein_coding CTCF-S2-jox2017_R1_peak_360 chr2R 9845274 9845441 + 101 NA TTS (FBgn0033886) protein_coding-TTS (FBgn0033886) 237 FBgn0262739 FBgn0262739 FBtr0087613 AGO1 protein_coding CTCF-S2-jox2017_R1_peak_597 chr3L 7012067 7012225 + 100 NA intron (FBgn0260660, intron 1 of 18) protein_coding-intron (FBgn0260660, intron 4 of 21) 7748 FBgn0035730 FBgn0035730 FBtr0076932 CG17744 protein_coding CTCF-S2-jox2017_R1_peak_380 chr2R 11373058 11373251 + 100 NA TTS (FBgn0034022) protein_coding-TTS (FBgn0034022) -2816 FBgn0034021 FBgn0034021 FBtr0087359 CG8180 protein_coding CTCF-S2-jox2017_R1_peak_773 chr3L 20167426 20167597 + 100 NA intron (FBgn0261556, intron 3 of 14) protein_coding-intron (FBgn0261556, intron 2 of 14) 10974 FBgn0261556 FBgn0261556 FBtr0332699 CG42674 protein_coding CTCF-S2-jox2017_R1_peak_594 chr3L 6935152 6935511 + 99 NA promoter-TSS (FBgn0035719) protein_coding-promoter-TSS (FBgn0035719) -625 FBgn0035719 FBgn0035719 FBtr0113150 tow protein_coding CTCF-S2-jox2017_R1_peak_691 chr3L 14188937 14189098 + 99 NA intron (FBgn0013718, intron 1 of 10) protein_coding-intron (FBgn0013718, intron 1 of 9) -6269 FBgn0036414 FBgn0036414 FBtr0321258 nan protein_coding CTCF-S2-jox2017_R1_peak_1559 chrX 20503080 20503425 + 99 NA Intergenic Intergenic -8452 FBgn0083981 FBgn0083981 FBtr0331160 RunxA protein_coding CTCF-S2-jox2017_R1_peak_471 chr2R 19597315 19597508 + 99 NA promoter-TSS (FBgn0011297) protein_coding-promoter-TSS (FBgn0011297) -100 FBgn0011297 FBgn0011297 FBtr0072095 l(2)not protein_coding CTCF-S2-jox2017_R1_peak_530 chr3L 2554251 2554426 + 99 NA promoter-TSS (FBgn0010905) protein_coding-promoter-TSS (FBgn0010905) -46 FBgn0010905 FBgn0010905 FBtr0308203 Spn protein_coding CTCF-S2-jox2017_R1_peak_616 chr3L 8938200 8938367 + 98 NA promoter-TSS (FBgn0264307) protein_coding-promoter-TSS (FBgn0264307) 8051 FBgn0264307 FBgn0264307 FBtr0331511 orb2 protein_coding CTCF-S2-jox2017_R1_peak_501 chr2RHet 3069215 3069541 + 97 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_623 chr3L 9188314 9188478 + 97 NA Intergenic Intergenic 11317 FBgn0035968 FBgn0035968 FBtr0332126 Slc45-1 protein_coding CTCF-S2-jox2017_R1_peak_215 chr2L 19426515 19426701 + 97 NA promoter-TSS (FBgn0032779) protein_coding-promoter-TSS (FBgn0032779) 286 FBgn0032780 FBgn0032780 FBtr0081203 CG13085 protein_coding CTCF-S2-jox2017_R1_peak_263 chr2R 2154487 2154730 + 97 NA Intergenic Intergenic 21567 FBgn0033075 FBgn0033075 FBtr0114492 Pld protein_coding CTCF-S2-jox2017_R1_peak_641 chr3L 10278101 10278262 + 97 NA Intergenic Intergenic 11877 FBgn0036080 FBgn0036080 FBtr0076297 Or67d protein_coding CTCF-S2-jox2017_R1_peak_465 chr2R 19122652 19122817 + 97 NA Intergenic Intergenic 2585 FBgn0034835 FBgn0034835 FBtr0071999 CG3092 protein_coding CTCF-S2-jox2017_R1_peak_1160 chr4 757229 757388 + 97 NA intron (FBgn0005666, intron 20 of 45) protein_coding-intron (FBgn0005666, intron 16 of 40) 12278 FBgn0005666 FBgn0005666 FBtr0301341 bt protein_coding CTCF-S2-jox2017_R1_peak_886 chr3R 4840944 4841155 + 97 NA promoter-TSS (FBgn0037656) protein_coding-promoter-TSS (FBgn0037656) -44 FBgn0040534 FBgn0040534 FBtr0082006 CG11985 protein_coding CTCF-S2-jox2017_R1_peak_876 chr3R 3691713 3691930 + 97 NA intron (FBgn0037525, intron 6 of 14) protein_coding-intron (FBgn0037525, intron 6 of 14) 20634 FBgn0037525 FBgn0037525 FBtr0300826 CG17816 protein_coding CTCF-S2-jox2017_R1_peak_909 chr3R 7047402 7047573 + 97 NA promoter-TSS (FBgn0020910) protein_coding-promoter-TSS (FBgn0020910) -126 FBgn0037878 FBgn0037878 FBtr0082367 CG6693 protein_coding CTCF-S2-jox2017_R1_peak_642 chr3L 10392753 10393015 + 97 NA Intergenic Intergenic 12593 FBgn0264722 FBgn0264722 FBtr0334101 CR43990 ncRNA CTCF-S2-jox2017_R1_peak_888 chr3R 4916175 4916362 + 97 NA intron (FBgn0003165, intron 8 of 12) protein_coding-intron (FBgn0003165, intron 8 of 12) 25363 FBgn0037661 FBgn0037661 FBtr0081971 Ada protein_coding CTCF-S2-jox2017_R1_peak_295 chr2R 5406877 5407074 + 96 NA intron (FBgn0259246, intron 1 of 13) protein_coding-intron (FBgn0259246, intron 8 of 21) 15682 FBgn0259246 FBgn0259246 FBtr0305059 brp protein_coding CTCF-S2-jox2017_R1_peak_348 chr2R 8465741 8465908 + 96 NA TTS (FBgn0022764) protein_coding-TTS (FBgn0022764) 6207 FBgn0033755 FBgn0033755 FBtr0087826 ClC-b protein_coding CTCF-S2-jox2017_R1_peak_553 chr3L 3978885 3979040 + 96 NA Intergenic Intergenic -4934 FBgn0004880 FBgn0004880 FBtr0073165 scrt protein_coding CTCF-S2-jox2017_R1_peak_846 chr3R 1108647 1108792 + 96 NA exon (FBgn0013576, exon 1 of 5) protein_coding-exon (FBgn0013576, exon 1 of 5) -5162 FBgn0051538 FBgn0051538 FBtr0078819 CG31538 protein_coding CTCF-S2-jox2017_R1_peak_293 chr2R 5118156 5118345 + 96 NA intron (FBgn0010114, intron 4 of 6) protein_coding-intron (FBgn0010114, intron 4 of 7) -6785 FBgn0033395 FBgn0033395 FBtr0088591 Cyp4p2 protein_coding CTCF-S2-jox2017_R1_peak_628 chr3L 9464202 9464377 + 96 NA exon (FBgn0052043, exon 5 of 5) protein_coding-exon (FBgn0052043, exon 5 of 5) -1866 FBgn0036003 FBgn0036003 FBtr0310528 CG14180 protein_coding CTCF-S2-jox2017_R1_peak_739 chr3L 17853336 17853485 + 96 NA exon (FBgn0054002, exon 3 of 3) protein_coding-exon (FBgn0054002, exon 3 of 3) 1836 FBgn0054002 FBgn0054002 FBtr0302155 CG34002 protein_coding CTCF-S2-jox2017_R1_peak_97 chr2L 8741007 8741187 + 96 NA promoter-TSS (FBgn0003209) protein_coding-promoter-TSS (FBgn0003209) -437 FBgn0003209 FBgn0003209 FBtr0079746 raw protein_coding CTCF-S2-jox2017_R1_peak_1550 chrX 19155107 19155467 + 95 NA promoter-TSS (FBgn0040068) protein_coding-promoter-TSS (FBgn0040068) -28 FBgn0031006 FBgn0031006 FBtr0074689 rictor protein_coding CTCF-S2-jox2017_R1_peak_1071 chr3R 21754710 21754906 + 94 NA intron (FBgn0039396, intron 2 of 6) protein_coding-intron (FBgn0039396, intron 2 of 6) -2315 FBgn0054024 FBgn0054024 FBtr0308933 CR34024 ncRNA CTCF-S2-jox2017_R1_peak_600 chr3L 7359233 7359442 + 94 NA TTS (FBgn0035772) protein_coding-TTS (FBgn0035772) 3023 FBgn0035772 FBgn0035772 FBtr0302546 Sh3beta protein_coding CTCF-S2-jox2017_R1_peak_569 chr3L 5268722 5268885 + 94 NA intron (FBgn0052423, intron 2 of 11) protein_coding-intron (FBgn0052423, intron 2 of 10) 41220 FBgn0035598 FBgn0035598 FBtr0077171 CG4669 protein_coding CTCF-S2-jox2017_R1_peak_1114 chr3R 25960117 25960269 + 94 NA promoter-TSS (FBgn0086355) protein_coding-promoter-TSS (FBgn0086355) -196 FBgn0086355 FBgn0086355 FBtr0085584 Tpi protein_coding CTCF-S2-jox2017_R1_peak_36 chr2L 3618746 3618950 + 94 NA promoter-TSS (FBgn0015663) protein_coding-promoter-TSS (FBgn0015663) -343 FBgn0015663 FBgn0015663 FBtr0077532 Dot protein_coding CTCF-S2-jox2017_R1_peak_972 chr3R 12882218 12882363 + 94 NA intron (FBgn0020493, intron 2 of 7) protein_coding-intron (FBgn0020493, intron 2 of 7) 2561 FBgn0020493 FBgn0020493 FBtr0083394 Dad protein_coding CTCF-S2-jox2017_R1_peak_1327 chrUextra 28779932 28780206 + 93 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1186 chrU 2769076 2769332 + 93 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_107 chr2L 9569288 9569446 + 93 NA promoter-TSS (FBgn0032130) protein_coding-promoter-TSS (FBgn0032130) -950 FBgn0032130 FBgn0032130 FBtr0079835 CG3838 protein_coding CTCF-S2-jox2017_R1_peak_362 chr2R 10164604 10164775 + 92 NA intron (FBgn0263397, intron 1 of 7) protein_coding-intron (FBgn0263397, intron 1 of 14) 6383 FBgn0261269 FBgn0261269 FBtr0087540 conv protein_coding CTCF-S2-jox2017_R1_peak_1214 chrUextra 6950153 6950437 + 92 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_673 chr3L 12519984 12520217 + 92 NA promoter-TSS (FBgn0004926) protein_coding-promoter-TSS (FBgn0004926) -263 FBgn0004926 FBgn0004926 FBtr0075968 eIF-2beta protein_coding CTCF-S2-jox2017_R1_peak_1496 chrX 14849264 14849422 + 92 NA promoter-TSS (FBgn0000535) protein_coding-promoter-TSS (FBgn0000535) -167 FBgn0000535 FBgn0000535 FBtr0310015 eag protein_coding CTCF-S2-jox2017_R1_peak_608 chr3L 8317131 8317344 + 92 NA Intergenic Intergenic -1722 FBgn0250833 FBgn0250833 FBtr0112767 CG34461 protein_coding CTCF-S2-jox2017_R1_peak_385 chr2R 11674012 11674169 + 92 NA intron (FBgn0083919, intron 2 of 15) protein_coding-intron (FBgn0083919, intron 2 of 15) 28360 FBgn0083919 FBgn0083919 FBtr0329910 Zasp52 protein_coding CTCF-S2-jox2017_R1_peak_575 chr3L 5809204 5809468 + 91 NA intron (FBgn0003984, intron 5 of 5) protein_coding-intron (FBgn0003984, intron 5 of 5) -3143 FBgn0035640 FBgn0035640 FBtr0077113 mad2 protein_coding CTCF-S2-jox2017_R1_peak_1259 chrUextra 22410197 22410347 + 91 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_427 chr2R 16193077 16193232 + 91 NA intron (FBgn0034500, intron 3 of 4) protein_coding-intron (FBgn0034500, intron 4 of 5) 2990 FBgn0034500 FBgn0034500 FBtr0086300 CG11200 protein_coding CTCF-S2-jox2017_R1_peak_1175 chrU 1192895 1193059 + 91 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_665 chr3L 11846098 11846353 + 91 NA intron (FBgn0085449, intron 2 of 2) protein_coding-intron (FBgn0085449, intron 2 of 2) -5322 FBgn0040816 FBgn0040816 FBtr0076074 CG12521 protein_coding CTCF-S2-jox2017_R1_peak_181 chr2L 16598806 16598988 + 91 NA intron (FBgn0259735, intron 2 of 4) protein_coding-intron (FBgn0259735, intron 2 of 4) -7048 FBgn0051815 FBgn0051815 FBtr0080870 CG31815 protein_coding CTCF-S2-jox2017_R1_peak_1053 chr3R 20321624 20321789 + 91 NA Intergenic Intergenic 7327 FBgn0262389 FBgn0262389 FBtr0304260 mir-1017 pre_miRNA CTCF-S2-jox2017_R1_peak_1467 chrX 12280401 12280650 + 91 NA Intergenic Intergenic -8737 FBgn0030385 FBgn0030385 FBtr0073673 Ir11a protein_coding CTCF-S2-jox2017_R1_peak_63 chr2L 6249391 6249555 + 91 NA Intergenic Intergenic -3650 FBgn0053531 FBgn0053531 FBtr0301305 Ddr protein_coding CTCF-S2-jox2017_R1_peak_1379 chrX 3317299 3317523 + 91 NA intron (FBgn0029657, intron 3 of 4) protein_coding-intron (FBgn0029657, intron 2 of 3) 4145 FBgn0052493 FBgn0052493 FBtr0070533 tRNA:CR32493 tRNA CTCF-S2-jox2017_R1_peak_944 chr3R 11319061 11319223 + 91 NA TTS (FBgn0038344) protein_coding-TTS (FBgn0038344) -1182 FBgn0038345 FBgn0038345 FBtr0083148 CG5213 protein_coding CTCF-S2-jox2017_R1_peak_1067 chr3R 21252997 21253201 + 91 NA intron (FBgn0004509, intron 1 of 9) protein_coding-intron (FBgn0004509, intron 2 of 11) -26732 FBgn0051439 FBgn0051439 FBtr0084845 Muc96D protein_coding CTCF-S2-jox2017_R1_peak_1450 chrX 10100228 10100461 + 91 NA TTS (FBgn0030183) protein_coding-TTS (FBgn0030183) 1911 FBgn0052690 FBgn0052690 FBtr0303456 CR32690 ncRNA CTCF-S2-jox2017_R1_peak_1176 chrU 1230495 1230703 + 91 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1353 chrX 737417 737655 + 91 NA intron (FBgn0264449, intron 3 of 12) protein_coding-intron (FBgn0264449, intron 3 of 11) -1320 FBgn0029535 FBgn0029535 FBtr0070142 CG14635 protein_coding CTCF-S2-jox2017_R1_peak_1292 chrUextra 28073748 28073935 + 91 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1507 chrX 15581124 15581286 + 91 NA exon (FBgn0030667, exon 3 of 5) protein_coding-exon (FBgn0030667, exon 3 of 5) 1617 FBgn0030667 FBgn0030667 FBtr0307503 CG15599 protein_coding CTCF-S2-jox2017_R1_peak_1335 chrUextra 28879694 28879947 + 91 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_572 chr3L 5534848 5534999 + 90 NA intron (FBgn0035612, intron 2 of 7) protein_coding-intron (FBgn0035612, intron 3 of 9) -6064 FBgn0035611 FBgn0035611 FBtr0077141 CG13285 protein_coding CTCF-S2-jox2017_R1_peak_939 chr3R 10658047 10658344 + 90 NA intron (FBgn0053555, intron 1 of 13) protein_coding-intron (FBgn0053555, intron 1 of 11) -12570 FBgn0038266 FBgn0038266 FBtr0082994 CG3610 protein_coding CTCF-S2-jox2017_R1_peak_815 chr3L 24249446 24249747 + 90 NA intron (FBgn0011288, intron 6 of 6) protein_coding-intron (FBgn0011288, intron 6 of 7) -68371 FBgn0259697 FBgn0259697 FBtr0113473 nvd protein_coding CTCF-S2-jox2017_R1_peak_577 chr3L 5845113 5845313 + 90 NA Intergenic Intergenic -6449 FBgn0003984 FBgn0003984 FBtr0077082 vn protein_coding CTCF-S2-jox2017_R1_peak_1274 chrUextra 25505517 25505795 + 90 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_475 chr2R 20200731 20200915 + 90 NA TTS (FBgn0003888) protein_coding-TTS (FBgn0003888) 7418 FBgn0003888 FBgn0003888 FBtr0072270 betaTub60D protein_coding CTCF-S2-jox2017_R1_peak_1319 chrUextra 28734827 28735073 + 90 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_496 chr2RHet 3002159 3002345 + 89 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1385 chrX 3637328 3637538 + 89 NA intron (FBgn0086899, intron 1 of 7) protein_coding-intron (FBgn0086899, intron 1 of 7) -23768 FBgn0015286 FBgn0015286 FBtr0070584 Rala protein_coding CTCF-S2-jox2017_R1_peak_882 chr3R 4643009 4643179 + 89 NA TTS (FBgn0037636) protein_coding-TTS (FBgn0037636) -2246 FBgn0262604 FBgn0262604 FBtr0305278 CG43130 protein_coding CTCF-S2-jox2017_R1_peak_58 chr2L 5403555 5403738 + 89 NA promoter-TSS (FBgn0016660) protein_coding-promoter-TSS (FBgn0016660) -696 FBgn0016660 FBgn0016660 FBtr0079076 H15 protein_coding CTCF-S2-jox2017_R1_peak_371 chr2R 10603360 10603505 + 89 NA Intergenic Intergenic -2305 FBgn0020269 FBgn0020269 FBtr0087477 mspo protein_coding CTCF-S2-jox2017_R1_peak_1284 chrUextra 27077169 27077526 + 89 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1182 chrU 2307920 2308125 + 89 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_25 chr2L 2226801 2226974 + 89 NA promoter-TSS (FBgn0031403) protein_coding-promoter-TSS (FBgn0031403) 364 FBgn0010704 FBgn0010704 FBtr0100674 l(2)s5379 protein_coding CTCF-S2-jox2017_R1_peak_222 chr2L 20084760 20084937 + 89 NA exon (FBgn0263773, exon 1 of 2) protein_coding-exon (FBgn0263773, exon 1 of 2) -4652 FBgn0263773 FBgn0263773 FBtr0310558 fok protein_coding CTCF-S2-jox2017_R1_peak_1485 chrX 13803096 13803306 + 89 NA intron (FBgn0263115, intron 2 of 7) protein_coding-intron (FBgn0263115, intron 1 of 4) -46083 FBgn0030536 FBgn0030536 FBtr0073854 CG11068 protein_coding CTCF-S2-jox2017_R1_peak_1428 chrX 7136056 7136539 + 89 NA TTS (FBgn0029939) protein_coding-TTS (FBgn0029939) -24640 FBgn0029940 FBgn0029940 FBtr0071046 CG1958 protein_coding CTCF-S2-jox2017_R1_peak_26 chr2L 2704829 2704989 + 88 NA intron (FBgn0051690, intron 2 of 7) protein_coding-intron (FBgn0051690, intron 3 of 8) -8472 FBgn0031446 FBgn0031446 FBtr0300986 CG15398 protein_coding CTCF-S2-jox2017_R1_peak_532 chr3L 2743841 2744006 + 88 NA intron (FBgn0052296, intron 1 of 4) protein_coding-intron (FBgn0052296, intron 1 of 4) 4173 FBgn0020509 FBgn0020509 FBtr0072943 Acp62F protein_coding CTCF-S2-jox2017_R1_peak_574 chr3L 5742870 5743031 + 88 NA TTS (FBgn0263106) protein_coding-TTS (FBgn0263106) 2339 FBgn0263106 FBgn0263106 FBtr0077124 DnaJ-1 protein_coding CTCF-S2-jox2017_R1_peak_867 chr3R 2796367 2796552 + 88 NA intron (FBgn0260642, intron 1 of 6) protein_coding-intron (FBgn0260642, intron 1 of 6) -37897 FBgn0260642 FBgn0260642 FBtr0081646 Antp protein_coding CTCF-S2-jox2017_R1_peak_624 chr3L 9324505 9324665 + 88 NA Intergenic Intergenic -4204 FBgn0035975 FBgn0035975 FBtr0076433 PGRP-LA protein_coding CTCF-S2-jox2017_R1_peak_1000 chr3R 15505664 15505829 + 88 NA intron (FBgn0051216, intron 1 of 6) protein_coding-intron (FBgn0051216, intron 1 of 6) -7675 FBgn0012003 FBgn0012003 FBtr0083799 tRNA:V3b:92Ba tRNA CTCF-S2-jox2017_R1_peak_1276 chrUextra 25742571 25742827 + 88 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_417 chr2R 14891954 14892168 + 88 NA intron (FBgn0034412, intron 7 of 12) protein_coding-intron (FBgn0034412, intron 7 of 12) 9860 FBgn0263473 FBgn0263473 FBtr0309772 snoRNA:abba-a snoRNA CTCF-S2-jox2017_R1_peak_1165 chr4 1133595 1133842 + 88 NA exon (FBgn0005561, exon 13 of 13) protein_coding-exon (FBgn0005561, exon 13 of 13) 10265 FBgn0039928 FBgn0039928 FBtr0333700 cals protein_coding CTCF-S2-jox2017_R1_peak_828 chr3LHet 1843632 1843814 + 88 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1317 chrUextra 28689421 28689566 + 88 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_932 chr3R 9889978 9890131 + 87 NA intron (FBgn0038197, intron 2 of 10) protein_coding-intron (FBgn0038197, intron 2 of 10) 7364 FBgn0038197 FBgn0038197 FBtr0305052 foxo protein_coding CTCF-S2-jox2017_R1_peak_1513 chrX 16456500 16456654 + 87 NA exon (FBgn0030758, exon 2 of 2) protein_coding-exon (FBgn0030758, exon 2 of 2) -2521 FBgn0011826 FBgn0011826 FBtr0074294 Pp2B-14D protein_coding CTCF-S2-jox2017_R1_peak_208 chr2L 19260425 19260819 + 87 NA exon (FBgn0051797, exon 2 of 2) protein_coding-exon (FBgn0051797, exon 2 of 2) 2271 FBgn0051797 FBgn0051797 FBtr0081227 CG31797 protein_coding CTCF-S2-jox2017_R1_peak_4 chr2L 248319 248476 + 87 NA intron (FBgn0086902, intron 1 of 16) protein_coding-intron (FBgn0086902, intron 1 of 17) 2426 FBgn0086902 FBgn0086902 FBtr0078145 kis protein_coding CTCF-S2-jox2017_R1_peak_1433 chrX 7584831 7584978 + 87 NA intron (FBgn0029504, intron 1 of 5) protein_coding-intron (FBgn0029504, intron 1 of 5) 4047 FBgn0029504 FBgn0029504 FBtr0071079 CHES-1-like protein_coding CTCF-S2-jox2017_R1_peak_1187 chrU 3070540 3070709 + 87 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_259 chr2R 1839302 1839487 + 87 NA Intergenic Intergenic -5966 FBgn0033047 FBgn0033047 FBtr0085966 CG7882 protein_coding CTCF-S2-jox2017_R1_peak_430 chr2R 16557992 16558185 + 87 NA promoter-TSS (FBgn0034543) protein_coding-promoter-TSS (FBgn0034543) 209 FBgn0000615 FBgn0000615 FBtr0086243 exu protein_coding CTCF-S2-jox2017_R1_peak_1405 chrX 5137876 5138037 + 87 NA exon (FBgn0086911, exon 20 of 26) protein_coding-exon (FBgn0086911, exon 20 of 26) -52171 FBgn0261803 FBgn0261803 FBtr0303279 CG42749 protein_coding CTCF-S2-jox2017_R1_peak_727 chr3L 16904942 16905125 + 87 NA intron (FBgn0261565, intron 1 of 5) protein_coding-intron (FBgn0261565, intron 1 of 5) -11319 FBgn0036676 FBgn0036676 FBtr0075261 CG13028 protein_coding CTCF-S2-jox2017_R1_peak_485 chr2RHet 116242 116657 + 87 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_458 chr2R 18656052 18656248 + 87 NA intron (FBgn0259145, intron 2 of 11) protein_coding-intron (FBgn0259145, intron 2 of 11) 4911 FBgn0034776 FBgn0034776 FBtr0071880 CG13527 protein_coding CTCF-S2-jox2017_R1_peak_163 chr2L 14287996 14288154 + 87 NA intron (FBgn0261563, intron 3 of 12) protein_coding-intron (FBgn0261563, intron 3 of 15) -3126 FBgn0263648 FBgn0263648 FBtr0310012 CR43639 ncRNA CTCF-S2-jox2017_R1_peak_318 chr2R 6452438 6452608 + 87 NA intron (FBgn0263102, intron 3 of 10) protein_coding-intron (FBgn0263102, intron 3 of 9) 7130 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding CTCF-S2-jox2017_R1_peak_452 chr2R 17857112 17857404 + 87 NA intron (FBgn0085398, intron 7 of 9) protein_coding-intron (FBgn0085398, intron 7 of 9) 1527 FBgn0054029 FBgn0054029 FBtr0100084 CG34029 protein_coding CTCF-S2-jox2017_R1_peak_883 chr3R 4658649 4658830 + 87 NA TTS (FBgn0262614) protein_coding-TTS (FBgn0262614) 8607 FBgn0037638 FBgn0037638 FBtr0081922 CG8379 protein_coding CTCF-S2-jox2017_R1_peak_1302 chrUextra 28551623 28551877 + 87 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_130 chr2L 11494122 11494320 + 87 NA Intergenic Intergenic 4898 FBgn0032361 FBgn0032361 FBtr0080248 CG6488 protein_coding CTCF-S2-jox2017_R1_peak_635 chr3L 10173601 10173761 + 87 NA intron (FBgn0052057, intron 2 of 6) protein_coding-intron (FBgn0052057, intron 2 of 7) 5527 FBgn0052057 FBgn0052057 FBtr0331552 dpr10 protein_coding CTCF-S2-jox2017_R1_peak_146 chr2L 12404063 12404216 + 87 NA exon (FBgn0043841, exon 6 of 6) protein_coding-exon (FBgn0043841, exon 6 of 6) 5865 FBgn0041195 FBgn0041195 FBtr0080365 Pkd2 protein_coding CTCF-S2-jox2017_R1_peak_376 chr2R 11024101 11024271 + 87 NA intron (FBgn0015371, intron 1 of 5) protein_coding-intron (FBgn0015371, intron 1 of 4) 8838 FBgn0262954 FBgn0262954 FBtr0112379 Rpb12 protein_coding CTCF-S2-jox2017_R1_peak_199 chr2L 18392675 18392872 + 87 NA exon (FBgn0000636, exon 8 of 8) protein_coding-exon (FBgn0000636, exon 8 of 8) 14147 FBgn0085200 FBgn0085200 FBtr0305066 CG34171 protein_coding CTCF-S2-jox2017_R1_peak_801 chr3L 22825926 22826290 + 86 NA exon (FBgn0027339, exon 2 of 7) protein_coding-exon (FBgn0027339, exon 2 of 7) 380 FBgn0027339 FBgn0027339 FBtr0100184 jim protein_coding CTCF-S2-jox2017_R1_peak_783 chr3L 20577427 20577586 + 86 NA Intergenic Intergenic 36253 FBgn0001323 FBgn0001323 FBtr0078212 knrl protein_coding CTCF-S2-jox2017_R1_peak_938 chr3R 10656471 10656663 + 86 NA intron (FBgn0053555, intron 1 of 13) protein_coding-intron (FBgn0053555, intron 1 of 11) -14198 FBgn0038266 FBgn0038266 FBtr0082994 CG3610 protein_coding CTCF-S2-jox2017_R1_peak_503 chr2RHet 3233221 3233406 + 86 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_644 chr3L 10786764 10786912 + 86 NA Intergenic Intergenic -7452 FBgn0036102 FBgn0036102 FBtr0076266 CG12523 protein_coding CTCF-S2-jox2017_R1_peak_638 chr3L 10247608 10247811 + 86 NA Intergenic Intergenic -9903 FBgn0036078 FBgn0036078 FBtr0076300 Or67c protein_coding CTCF-S2-jox2017_R1_peak_99 chr2L 9277582 9277735 + 86 NA intron (FBgn0263984, intron 2 of 2) protein_coding-intron (FBgn0028433, intron 3 of 3) 21095 FBgn0263984 FBgn0263984 FBtr0330020 CG43733 protein_coding CTCF-S2-jox2017_R1_peak_195 chr2L 17958386 17958546 + 86 NA Intergenic Intergenic -4948 FBgn0032656 FBgn0032656 FBtr0290267 CG5674 protein_coding CTCF-S2-jox2017_R1_peak_1306 chrUextra 28583470 28583615 + 85 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_858 chr3R 2248984 2249159 + 85 NA intron (FBgn0264495, intron 2 of 9) protein_coding-intron (FBgn0264495, intron 2 of 8) 16492 FBgn0264495 FBgn0264495 FBtr0303788 gpp protein_coding CTCF-S2-jox2017_R1_peak_391 chr2R 12216307 12216459 + 85 NA exon (FBgn0262511, exon 5 of 11) protein_coding-exon (FBgn0262511, exon 5 of 11) 6690 FBgn0034114 FBgn0034114 FBtr0087144 CG4282 protein_coding CTCF-S2-jox2017_R1_peak_505 chr3L 253061 253207 + 84 NA intron (FBgn0024806, intron 8 of 15) protein_coding-intron (FBgn0024806, intron 8 of 15) 4820 FBgn0024806 FBgn0024806 FBtr0332110 DIP2 protein_coding CTCF-S2-jox2017_R1_peak_1034 chr3R 18320538 18320697 + 84 NA Intergenic Intergenic 1886 FBgn0038979 FBgn0038979 FBtr0084259 CG7046 protein_coding CTCF-S2-jox2017_R1_peak_1012 chr3R 16626331 16626520 + 84 NA intron (FBgn0038826, intron 7 of 8) protein_coding-intron (FBgn0038826, intron 11 of 11) 15498 FBgn0038827 FBgn0038827 FBtr0083995 Fancd2 protein_coding CTCF-S2-jox2017_R1_peak_339 chr2R 7976053 7976255 + 84 NA exon (FBgn0086677, exon 3 of 3) protein_coding-exon (FBgn0086677, exon 3 of 3) 7373 FBgn0033680 FBgn0033680 FBtr0087981 CG13186 protein_coding CTCF-S2-jox2017_R1_peak_708 chr3L 15261790 15261955 + 84 NA Intergenic Intergenic -30186 FBgn0036491 FBgn0036491 FBtr0113172 Best4 protein_coding CTCF-S2-jox2017_R1_peak_579 chr3L 5950386 5950542 + 84 NA Intergenic Intergenic 18643 FBgn0035656 FBgn0035656 FBtr0332041 CG10479 protein_coding CTCF-S2-jox2017_R1_peak_404 chr2R 13241263 13241417 + 84 NA TTS (FBgn0261642) protein_coding-TTS (FBgn0261642) 38010 FBgn0050232 FBgn0050232 FBtr0086965 tRNA:CR30232 tRNA CTCF-S2-jox2017_R1_peak_685 chr3L 13865080 13865280 + 83 NA exon (FBgn0264006, exon 17 of 17) protein_coding-exon (FBgn0264006, exon 17 of 17) -5175 FBgn0036381 FBgn0036381 FBtr0075801 CG8745 protein_coding CTCF-S2-jox2017_R1_peak_1370 chrX 2688960 2689227 + 83 NA intron (FBgn0003996, intron 1 of 5) protein_coding-intron (FBgn0003996, intron 1 of 5) 1406 FBgn0003996 FBgn0003996 FBtr0070490 w protein_coding CTCF-S2-jox2017_R1_peak_670 chr3L 12042832 12043006 + 83 NA intron (FBgn0041096, intron 2 of 6) protein_coding-intron (FBgn0041096, intron 2 of 7) 5240 FBgn0263647 FBgn0263647 FBtr0310008 CG43638 protein_coding CTCF-S2-jox2017_R1_peak_775 chr3L 20313013 20313458 + 83 NA promoter-TSS (FBgn0036969) protein_coding-promoter-TSS (FBgn0036969) -817 FBgn0036969 FBgn0036969 FBtr0074843 Spn77Bb protein_coding CTCF-S2-jox2017_R1_peak_833 chr3R 113098 113312 + 82 NA intron (FBgn0041605, intron 4 of 7) protein_coding-intron (FBgn0041605, intron 3 of 6) -4465 FBgn0041605 FBgn0041605 FBtr0100499 cpx protein_coding CTCF-S2-jox2017_R1_peak_305 chr2R 6059461 6059632 + 82 NA intron (FBgn0033494, intron 1 of 16) protein_coding-intron (FBgn0033494, intron 1 of 16) -13457 FBgn0033495 FBgn0033495 FBtr0088370 CG12214 protein_coding CTCF-S2-jox2017_R1_peak_607 chr3L 8095399 8095629 + 82 NA exon (FBgn0262579, exon 2 of 7) protein_coding-exon (FBgn0262579, exon 2 of 7) -6718 FBgn0028379 FBgn0028379 FBtr0076683 fan protein_coding CTCF-S2-jox2017_R1_peak_320 chr2R 6810662 6810831 + 82 NA Intergenic Intergenic 13318 FBgn0033573 FBgn0033573 FBtr0088200 Obp47a protein_coding CTCF-S2-jox2017_R1_peak_52 chr2L 4811759 4811906 + 81 NA Intergenic Intergenic -1177 FBgn0031630 FBgn0031630 FBtr0077383 CG15629 protein_coding CTCF-S2-jox2017_R1_peak_879 chr3R 4194387 4194533 + 81 NA intron (FBgn0263416, intron 15 of 15) protein_coding-intron (FBgn0263416, intron 15 of 15) 5912 FBgn0037584 FBgn0037584 FBtr0301759 CG7963 protein_coding CTCF-S2-jox2017_R1_peak_1240 chrUextra 14369218 14369474 + 81 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_788 chr3L 20853367 20853526 + 81 NA exon (FBgn0052432, exon 3 of 20) protein_coding-exon (FBgn0052432, exon 3 of 20) 18359 FBgn0037031 FBgn0037031 FBtr0333371 CG11456 protein_coding CTCF-S2-jox2017_R1_peak_692 chr3L 14191616 14191766 + 80 NA intron (FBgn0013718, intron 1 of 10) protein_coding-intron (FBgn0013718, intron 1 of 9) -4732 FBgn0052141 FBgn0052141 FBtr0075735 CG32141 protein_coding CTCF-S2-jox2017_R1_peak_1150 chr4 334471 334662 + 80 NA promoter-TSS (FBgn0052850) protein_coding-promoter-TSS (FBgn0052850) 147 FBgn0039902 FBgn0039902 FBtr0089133 CG2177 protein_coding CTCF-S2-jox2017_R1_peak_47 chr2L 4530221 4530428 + 80 NA intron (FBgn0053196, intron 21 of 66) protein_coding-intron (FBgn0053196, intron 21 of 46) 47877 FBgn0031613 FBgn0031613 FBtr0077444 HP6 protein_coding CTCF-S2-jox2017_R1_peak_315 chr2R 6408771 6408926 + 80 NA TTS (FBgn0005630) protein_coding-TTS (FBgn0005630) 13735 FBgn0005630 FBgn0005630 FBtr0089362 lola protein_coding CTCF-S2-jox2017_R1_peak_1382 chrX 3568968 3569160 + 80 NA intron (FBgn0023215, intron 1 of 8) protein_coding-intron (FBgn0023215, intron 1 of 8) -3529 FBgn0023216 FBgn0023216 FBtr0307279 Parg protein_coding CTCF-S2-jox2017_R1_peak_367 chr2R 10380220 10380371 + 80 NA intron (FBgn0001332, intron 1 of 3) protein_coding-intron (FBgn0001332, intron 1 of 3) 10689 FBgn0024698 FBgn0024698 FBtr0089258 Cpsf160 protein_coding CTCF-S2-jox2017_R1_peak_1419 chrX 6147801 6148172 + 80 NA intron (FBgn0023458, intron 1 of 14) protein_coding-intron (FBgn0023458, intron 1 of 14) 1395 FBgn0023458 FBgn0023458 FBtr0303341 Rbcn-3A protein_coding CTCF-S2-jox2017_R1_peak_565 chr3L 4840243 4840484 + 80 NA promoter-TSS (FBgn0035578) protein_coding-promoter-TSS (FBgn0035578) -267 FBgn0035578 FBgn0035578 FBtr0308822 CG13707 protein_coding CTCF-S2-jox2017_R1_peak_1570 chrX 21652710 21653095 + 80 NA Intergenic Intergenic -151717 FBgn0024807 FBgn0024807 FBtr0301292 DIP1 protein_coding CTCF-S2-jox2017_R1_peak_247 chr2R 217624 217830 + 80 NA intron (FBgn0260798, intron 14 of 15) protein_coding-intron (FBgn0260798, intron 13 of 14) -87283 FBgn0262117 FBgn0262117 FBtr0111269 IntS3 protein_coding CTCF-S2-jox2017_R1_peak_743 chr3L 18028277 18028459 + 80 NA intron (FBgn0000568, intron 3 of 7) protein_coding-intron (FBgn0000568, intron 1 of 5) -5049 FBgn0052192 FBgn0052192 FBtr0300047 CG32192 protein_coding CTCF-S2-jox2017_R1_peak_273 chr2R 3828008 3828207 + 80 NA promoter-TSS (FBgn0050380) protein_coding-promoter-TSS (FBgn0050380) 646 FBgn0050379 FBgn0050379 FBtr0305125 CG30379 protein_coding CTCF-S2-jox2017_R1_peak_707 chr3L 15260904 15261080 + 80 NA Intergenic Intergenic -31066 FBgn0036491 FBgn0036491 FBtr0113172 Best4 protein_coding CTCF-S2-jox2017_R1_peak_22 chr2L 1902416 1902573 + 80 NA intron (FBgn0031374, intron 1 of 17) protein_coding-intron (FBgn0031374, intron 1 of 18) 17872 FBgn0031374 FBgn0031374 FBtr0110882 CG7337 protein_coding CTCF-S2-jox2017_R1_peak_1354 chrX 737717 737940 + 79 NA intron (FBgn0264449, intron 3 of 12) protein_coding-intron (FBgn0264449, intron 3 of 11) -1028 FBgn0029535 FBgn0029535 FBtr0070142 CG14635 protein_coding CTCF-S2-jox2017_R1_peak_853 chr3R 1919151 1919301 + 79 NA exon (FBgn0026077, exon 5 of 5) protein_coding-exon (FBgn0026077, exon 5 of 5) 7383 FBgn0026077 FBgn0026077 FBtr0078619 Gasp protein_coding CTCF-S2-jox2017_R1_peak_1562 chrX 20663731 20663888 + 79 NA promoter-TSS (FBgn0085387) protein_coding-promoter-TSS (FBgn0085387) -11562 FBgn0052507 FBgn0052507 FBtr0302987 CG32507 protein_coding CTCF-S2-jox2017_R1_peak_23 chr2L 2099026 2099215 + 79 NA intron (FBgn0053516, intron 1 of 7) protein_coding-intron (FBgn0053516, intron 1 of 7) 10758 FBgn0053516 FBgn0053516 FBtr0300671 dpr3 protein_coding CTCF-S2-jox2017_R1_peak_1422 chrX 6435419 6435596 + 79 NA intron (FBgn0085446, intron 1 of 9) protein_coding-intron (FBgn0085446, intron 1 of 3) 7464 FBgn0000524 FBgn0000524 FBtr0070914 dx protein_coding CTCF-S2-jox2017_R1_peak_1389 chrX 3973575 3973786 + 79 NA intron (FBgn0263772, intron 2 of 9) protein_coding-intron (FBgn0263772, intron 2 of 10) 3573 FBgn0263772 FBgn0263772 FBtr0310493 CG43689 protein_coding CTCF-S2-jox2017_R1_peak_1290 chrUextra 27511740 27511896 + 79 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1217 chrUextra 7349486 7349632 + 79 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1542 chrX 18515541 18515783 + 79 NA exon (FBgn0262981, exon 1 of 2) protein_coding-exon (FBgn0262981, exon 1 of 2) 131 FBgn0262981 FBgn0262981 FBtr0306817 CG43289 protein_coding CTCF-S2-jox2017_R1_peak_78 chr2L 7097463 7097644 + 79 NA Intergenic Intergenic -12919 FBgn0031888 FBgn0031888 FBtr0079423 Pvf2 protein_coding CTCF-S2-jox2017_R1_peak_1105 chr3R 25414772 25414948 + 79 NA TTS (FBgn0051041) protein_coding-TTS (FBgn0051041) 624 FBgn0039671 FBgn0039671 FBtr0085471 CG11470 protein_coding CTCF-S2-jox2017_R1_peak_1123 chr3R 26760649 26760800 + 79 NA TTS (FBgn0039810) protein_coding-TTS (FBgn0039810) 1505 FBgn0039810 FBgn0039810 FBtr0085752 CG15549 protein_coding CTCF-S2-jox2017_R1_peak_904 chr3R 6364678 6364870 + 78 NA intron (FBgn0001235, intron 7 of 12) protein_coding-intron (FBgn0001235, intron 6 of 11) -25996 FBgn0263547 FBgn0263547 FBtr0309664 mir-4944 pre_miRNA CTCF-S2-jox2017_R1_peak_1131 chr3RHet 873660 873822 + 78 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_714 chr3L 15886736 15886899 + 78 NA exon (FBgn0036542, exon 2 of 11) protein_coding-exon (FBgn0036542, exon 2 of 11) 5312 FBgn0036542 FBgn0036542 FBtr0100034 pHCl protein_coding CTCF-S2-jox2017_R1_peak_1180 chrU 1400886 1401044 + 78 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_174 chr2L 15439077 15439283 + 78 NA Intergenic Intergenic 5818 FBgn0028892 FBgn0028892 FBtr0080735 CG4161 protein_coding CTCF-S2-jox2017_R1_peak_5 chr2L 395493 395658 + 78 NA promoter-TSS (FBgn0263871) ncRNA-promoter-TSS (FBgn0263871) -545 FBgn0263871 FBgn0263871 FBtr0329831 CR43718 ncRNA CTCF-S2-jox2017_R1_peak_106 chr2L 9568388 9568547 + 78 NA promoter-TSS (FBgn0032130) protein_coding-promoter-TSS (FBgn0032130) -1850 FBgn0032130 FBgn0032130 FBtr0079835 CG3838 protein_coding CTCF-S2-jox2017_R1_peak_406 chr2R 13256962 13257111 + 78 NA intron (FBgn0261642, intron 7 of 7) protein_coding-intron (FBgn0261642, intron 6 of 7) 22314 FBgn0050232 FBgn0050232 FBtr0086965 tRNA:CR30232 tRNA CTCF-S2-jox2017_R1_peak_312 chr2R 6363059 6363233 + 78 NA promoter-TSS (FBgn0261862) protein_coding-promoter-TSS (FBgn0261862) -163 FBgn0261862 FBgn0261862 FBtr0301282 whd protein_coding CTCF-S2-jox2017_R1_peak_506 chr3L 342874 343105 + 78 NA promoter-TSS (FBgn0035132) protein_coding-promoter-TSS (FBgn0035132) -74 FBgn0035132 FBgn0035132 FBtr0072572 mthl10 protein_coding CTCF-S2-jox2017_R1_peak_752 chr3L 18727070 18727295 + 78 NA Intergenic Intergenic 10275 FBgn0264717 FBgn0264717 FBtr0334051 CR43985 ncRNA CTCF-S2-jox2017_R1_peak_948 chr3R 11594791 11594954 + 78 NA Intergenic Intergenic -1712 FBgn0038357 FBgn0038357 FBtr0083197 CG5623 protein_coding CTCF-S2-jox2017_R1_peak_1349 chrX 425918 426073 + 77 NA intron (FBgn0000108, intron 2 of 10) protein_coding-intron (FBgn0000108, intron 2 of 11) 1492 FBgn0000108 FBgn0000108 FBtr0307291 Appl protein_coding CTCF-S2-jox2017_R1_peak_1301 chrUextra 28531104 28531252 + 77 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_296 chr2R 5409432 5409706 + 77 NA intron (FBgn0259246, intron 1 of 13) protein_coding-intron (FBgn0259246, intron 8 of 21) 18276 FBgn0259246 FBgn0259246 FBtr0305059 brp protein_coding CTCF-S2-jox2017_R1_peak_1253 chrUextra 19267845 19268076 + 77 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_262 chr2R 2154023 2154168 + 77 NA Intergenic Intergenic 21054 FBgn0033075 FBgn0033075 FBtr0114492 Pld protein_coding CTCF-S2-jox2017_R1_peak_164 chr2L 14547521 14547677 + 77 NA TTS (FBgn0250844) protein_coding-TTS (FBgn0250844) 1476 FBgn0250844 FBgn0250844 FBtr0080662 CG4218 protein_coding CTCF-S2-jox2017_R1_peak_66 chr2L 6356788 6356941 + 77 NA TTS (FBgn0031803) protein_coding-TTS (FBgn0031803) 1371 FBgn0031804 FBgn0031804 FBtr0079280 CG9500 protein_coding CTCF-S2-jox2017_R1_peak_1344 chrUextra 28979651 28979796 + 77 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_669 chr3L 12015104 12015257 + 77 NA intron (FBgn0041096, intron 4 of 6) protein_coding-intron (FBgn0041096, intron 4 of 7) -5721 FBgn0264726 FBgn0264726 FBtr0334107 CR43994 ncRNA CTCF-S2-jox2017_R1_peak_188 chr2L 17243233 17243396 + 77 NA intron (FBgn0032629, intron 2 of 6) protein_coding-intron (FBgn0032629, intron 2 of 5) 3955 FBgn0040987 FBgn0040987 FBtr0304947 CG15139 protein_coding CTCF-S2-jox2017_R1_peak_1001 chr3R 15517517 15517679 + 77 NA intron (FBgn0051216, intron 3 of 6) protein_coding-intron (FBgn0051216, intron 3 of 6) -19527 FBgn0012003 FBgn0012003 FBtr0083799 tRNA:V3b:92Ba tRNA CTCF-S2-jox2017_R1_peak_1427 chrX 7103358 7103614 + 77 NA intron (FBgn0029939, intron 1 of 3) protein_coding-intron (FBgn0029939, intron 2 of 5) 13424 FBgn0029939 FBgn0029939 FBtr0301241 CG9650 protein_coding CTCF-S2-jox2017_R1_peak_1199 chrUextra 82538 82759 + 77 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_102 chr2L 9520850 9521024 + 77 NA promoter-TSS (FBgn0032123) protein_coding-promoter-TSS (FBgn0032123) -277 FBgn0032123 FBgn0032123 FBtr0079828 Oatp30B protein_coding CTCF-S2-jox2017_R1_peak_837 chr3R 531488 531787 + 77 NA promoter-TSS (FBgn0263346) protein_coding-promoter-TSS (FBgn0263346) 8281 FBgn0037270 FBgn0037270 FBtr0078892 CG9769 protein_coding CTCF-S2-jox2017_R1_peak_1238 chrUextra 13674388 13674688 + 76 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_686 chr3L 13865452 13865663 + 76 NA exon (FBgn0264006, exon 17 of 17) protein_coding-exon (FBgn0264006, exon 17 of 17) -5552 FBgn0036381 FBgn0036381 FBtr0075801 CG8745 protein_coding CTCF-S2-jox2017_R1_peak_432 chr2R 16664654 16664942 + 76 NA promoter-TSS (FBgn0263848) protein_coding-promoter-TSS (FBgn0263848) 456 FBgn0263849 FBgn0263849 FBtr0321316 CG43710 protein_coding CTCF-S2-jox2017_R1_peak_646 chr3L 10855462 10855613 + 76 NA intron (FBgn0026160, intron 1 of 10) protein_coding-intron (FBgn0026160, intron 1 of 10) 4033 FBgn0026160 FBgn0026160 FBtr0076268 tna protein_coding CTCF-S2-jox2017_R1_peak_907 chr3R 6770920 6771067 + 76 NA Intergenic Intergenic -5013 FBgn0037857 FBgn0037857 FBtr0082326 Tengl4 protein_coding CTCF-S2-jox2017_R1_peak_1077 chr3R 22280559 22280706 + 75 NA promoter-TSS (FBgn0262577) protein_coding-promoter-TSS (FBgn0262577) 97 FBgn0262577 FBgn0262577 FBtr0305048 CG43117 protein_coding CTCF-S2-jox2017_R1_peak_912 chr3R 7096451 7096618 + 75 NA exon (FBgn0051386, exon 5 of 5) ncRNA-exon (FBgn0051386, exon 5 of 5) -14689 FBgn0262972 FBgn0262972 FBtr0306728 CR43283 ncRNA CTCF-S2-jox2017_R1_peak_836 chr3R 367814 368159 + 75 NA exon (FBgn0037260, exon 2 of 2) protein_coding-exon (FBgn0037260, exon 2 of 2) 908 FBgn0037260 FBgn0037260 FBtr0303866 Mur82C protein_coding CTCF-S2-jox2017_R1_peak_434 chr2R 16680954 16681141 + 75 NA exon (FBgn0034551, exon 1 of 1) protein_coding-exon (FBgn0034551, exon 1 of 1) 575 FBgn0034551 FBgn0034551 FBtr0071513 CG15225 protein_coding CTCF-S2-jox2017_R1_peak_408 chr2R 13681742 13681910 + 75 NA exon (FBgn0028743, exon 1 of 7) protein_coding-exon (FBgn0028743, exon 1 of 7) 1439 FBgn0028743 FBgn0028743 FBtr0301142 CG5036 protein_coding CTCF-S2-jox2017_R1_peak_557 chr3L 4447701 4447873 + 75 NA exon (FBgn0035545, exon 2 of 2) protein_coding-exon (FBgn0035545, exon 2 of 2) 1214 FBgn0035545 FBgn0035545 FBtr0333964 CG12607 protein_coding CTCF-S2-jox2017_R1_peak_766 chr3L 19305838 19306059 + 75 NA intron (FBgn0003089, intron 3 of 4) protein_coding-intron (FBgn0003089, intron 3 of 5) 18081 FBgn0028380 FBgn0028380 FBtr0321324 fal protein_coding CTCF-S2-jox2017_R1_peak_1472 chrX 12716647 12716796 + 75 NA intron (FBgn0259171, intron 3 of 9) protein_coding-intron (FBgn0259171, intron 3 of 9) 21027 FBgn0030425 FBgn0030425 FBtr0305591 CG3775 protein_coding CTCF-S2-jox2017_R1_peak_433 chr2R 16666420 16666602 + 75 NA exon (FBgn0263850, exon 1 of 1) protein_coding-exon (FBgn0263850, exon 1 of 1) 481 FBgn0263850 FBgn0263850 FBtr0321315 CG43711 protein_coding CTCF-S2-jox2017_R1_peak_1237 chrUextra 13457162 13457428 + 75 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_180 chr2L 16350171 16350420 + 75 NA promoter-TSS (FBgn0000307) protein_coding-promoter-TSS (FBgn0000307) -12 FBgn0000307 FBgn0000307 FBtr0321313 chif protein_coding CTCF-S2-jox2017_R1_peak_851 chr3R 1753627 1753802 + 74 NA intron (FBgn0083949, intron 1 of 16) protein_coding-intron (FBgn0083949, intron 1 of 16) 11531 FBgn0083949 FBgn0083949 FBtr0110807 CG34113 protein_coding CTCF-S2-jox2017_R1_peak_405 chr2R 13249586 13249732 + 73 NA TTS (FBgn0261642) protein_coding-TTS (FBgn0261642) 29691 FBgn0050232 FBgn0050232 FBtr0086965 tRNA:CR30232 tRNA CTCF-S2-jox2017_R1_peak_1476 chrX 13022910 13023055 + 73 NA promoter-TSS (FBgn0030451) protein_coding-promoter-TSS (FBgn0030451) -71 FBgn0030451 FBgn0030451 FBtr0073723 CG15717 protein_coding CTCF-S2-jox2017_R1_peak_800 chr3L 22664864 22665017 + 73 NA intron (FBgn0037174, intron 1 of 5) protein_coding-intron (FBgn0037174, intron 1 of 5) 1884 FBgn0037174 FBgn0037174 FBtr0331774 CG14457 protein_coding CTCF-S2-jox2017_R1_peak_870 chr3R 2865056 2865251 + 73 NA Intergenic Intergenic -12904 FBgn0024289 FBgn0024289 FBtr0081627 Sodh-1 protein_coding CTCF-S2-jox2017_R1_peak_1056 chr3R 20508484 20508631 + 73 NA intron (FBgn0003429, intron 8 of 25) protein_coding-intron (FBgn0003429, intron 8 of 24) 12471 FBgn0261637 FBgn0261637 FBtr0303007 CG42720 protein_coding CTCF-S2-jox2017_R1_peak_1219 chrUextra 7598778 7598929 + 73 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_947 chr3R 11556283 11556556 + 73 NA Intergenic Intergenic -1049 FBgn0085303 FBgn0085303 FBtr0112469 CG34274 protein_coding CTCF-S2-jox2017_R1_peak_345 chr2R 8276317 8276479 + 73 NA TTS (FBgn0033725) protein_coding-TTS (FBgn0033725) 1926 FBgn0033725 FBgn0033725 FBtr0301372 Cpr49Ac protein_coding CTCF-S2-jox2017_R1_peak_688 chr3L 13998328 13998488 + 73 NA intron (FBgn0036398, intron 2 of 7) protein_coding-intron (FBgn0036398, intron 2 of 7) 3181 FBgn0036398 FBgn0036398 FBtr0333050 CG9007 protein_coding CTCF-S2-jox2017_R1_peak_1473 chrX 12853897 12854095 + 73 NA exon (FBgn0052642, exon 2 of 3) protein_coding-exon (FBgn0052642, exon 2 of 3) 681 FBgn0052642 FBgn0052642 FBtr0305598 CG32642 protein_coding CTCF-S2-jox2017_R1_peak_819 chr3LHet 253248 253410 + 73 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_908 chr3R 7009016 7009229 + 73 NA Intergenic Intergenic 7871 FBgn0040252 FBgn0040252 FBtr0082340 Ugt86Dh protein_coding CTCF-S2-jox2017_R1_peak_483 chr2RHet 16264 16576 + 73 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1309 chrUextra 28618052 28618203 + 72 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_556 chr3L 4431772 4431919 + 72 NA intron (FBgn0000038, intron 2 of 6) protein_coding-intron (FBgn0000038, intron 2 of 6) 2496 FBgn0000038 FBgn0000038 FBtr0073300 nAcRbeta-64B protein_coding CTCF-S2-jox2017_R1_peak_1129 chr3RHet 837467 837668 + 72 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_808 chr3L 23845175 23845322 + 72 NA intron (FBgn0058470, intron 12 of 12) protein_coding-intron (FBgn0058470, intron 12 of 12) 30994 FBgn0264569 FBgn0264569 FBtr0333471 CR43941 ncRNA CTCF-S2-jox2017_R1_peak_823 chr3LHet 1046289 1046458 + 72 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_540 chr3L 3394349 3394494 + 72 NA Intergenic Intergenic 16153 FBgn0035445 FBgn0035445 FBtr0073077 CG12014 protein_coding CTCF-S2-jox2017_R1_peak_1490 chrX 14772314 14772574 + 72 NA exon (FBgn0030591, exon 2 of 3) protein_coding-exon (FBgn0030591, exon 2 of 3) 4174 FBgn0030591 FBgn0030591 FBtr0073982 CG9517 protein_coding CTCF-S2-jox2017_R1_peak_1486 chrX 14141164 14141360 + 72 NA promoter-TSS (FBgn0002873) protein_coding-promoter-TSS (FBgn0002873) -503 FBgn0002873 FBgn0002873 FBtr0332621 mud protein_coding CTCF-S2-jox2017_R1_peak_780 chr3L 20490939 20491089 + 71 NA TTS (FBgn0037001) protein_coding-TTS (FBgn0037001) 591 FBgn0052425 FBgn0052425 FBtr0078204 CG32425 protein_coding CTCF-S2-jox2017_R1_peak_725 chr3L 16877360 16877505 + 71 NA intron (FBgn0261565, intron 3 of 9) protein_coding-intron (FBgn0261565, intron 3 of 9) -2774 FBgn0261565 FBgn0261565 FBtr0302784 Lmpt protein_coding CTCF-S2-jox2017_R1_peak_1435 chrX 8502340 8502487 + 71 NA Intergenic Intergenic -2078 FBgn0030054 FBgn0030054 FBtr0071228 Caf1-180 protein_coding CTCF-S2-jox2017_R1_peak_482 chr2RHet 10 297 + 71 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_631 chr3L 9658434 9658636 + 71 NA intron (FBgn0016081, intron 6 of 27) protein_coding-intron (FBgn0016081, intron 6 of 26) 13668 FBgn0016081 FBgn0016081 FBtr0333858 fry protein_coding CTCF-S2-jox2017_R1_peak_560 chr3L 4584350 4584517 + 71 NA intron (FBgn0260657, intron 6 of 9) protein_coding-intron (FBgn0260657, intron 4 of 7) 27160 FBgn0260657 FBgn0260657 FBtr0304988 CG42540 protein_coding CTCF-S2-jox2017_R1_peak_850 chr3R 1494729 1494885 + 71 NA promoter-TSS (FBgn0037363) protein_coding-promoter-TSS (FBgn0037363) 243 FBgn0010772 FBgn0010772 FBtr0302368 Xe7 protein_coding CTCF-S2-jox2017_R1_peak_1340 chrUextra 28917734 28917897 + 71 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1050 chr3R 20006660 20006893 + 71 NA exon (FBgn0039161, exon 4 of 4) protein_coding-exon (FBgn0039161, exon 4 of 4) -5311 FBgn0029503 FBgn0029503 FBtr0084554 CHORD protein_coding CTCF-S2-jox2017_R1_peak_717 chr3L 16156991 16157165 + 70 NA exon (FBgn0036576, exon 1 of 5) protein_coding-exon (FBgn0036576, exon 1 of 5) 723 FBgn0036576 FBgn0036576 FBtr0307519 CG5151 protein_coding CTCF-S2-jox2017_R1_peak_950 chr3R 11883072 11883217 + 70 NA intron (FBgn0027948, intron 8 of 15) protein_coding-intron (FBgn0027948, intron 7 of 14) 5544 FBgn0027948 FBgn0027948 FBtr0304803 msps protein_coding CTCF-S2-jox2017_R1_peak_1092 chr3R 24238388 24238563 + 70 NA Intergenic Intergenic -5455 FBgn0039584 FBgn0039584 FBtr0085289 beat-VI protein_coding CTCF-S2-jox2017_R1_peak_651 chr3L 10910491 10910745 + 70 NA Intergenic Intergenic -18395 FBgn0036111 FBgn0036111 FBtr0076251 Aps protein_coding CTCF-S2-jox2017_R1_peak_1041 chr3R 19144544 19144701 + 70 NA intron (FBgn0003118, intron 3 of 8) protein_coding-intron (FBgn0003118, intron 3 of 8) 27262 FBgn0003118 FBgn0003118 FBtr0089715 pnt protein_coding CTCF-S2-jox2017_R1_peak_134 chr2L 11878901 11879112 + 70 NA intron (FBgn0259225, intron 3 of 9) protein_coding-intron (FBgn0259225, intron 3 of 9) 25576 FBgn0261805 FBgn0261805 FBtr0303281 CG42751 protein_coding CTCF-S2-jox2017_R1_peak_778 chr3L 20457897 20458049 + 70 NA promoter-TSS (FBgn0036995) protein_coding-promoter-TSS (FBgn0036995) -11 FBgn0036995 FBgn0036995 FBtr0331569 CG5195 protein_coding CTCF-S2-jox2017_R1_peak_337 chr2R 7692764 7692918 + 70 NA intron (FBgn0033652, intron 2 of 3) protein_coding-intron (FBgn0033652, intron 2 of 3) 14967 FBgn0033652 FBgn0033652 FBtr0088030 ths protein_coding CTCF-S2-jox2017_R1_peak_1063 chr3R 21224030 21224299 + 70 NA exon (FBgn0051439, exon 2 of 2) protein_coding-exon (FBgn0051439, exon 2 of 2) 2203 FBgn0051439 FBgn0051439 FBtr0084845 Muc96D protein_coding CTCF-S2-jox2017_R1_peak_1310 chrUextra 28628767 28628926 + 70 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_165 chr2L 14588623 14588770 + 70 NA promoter-TSS (FBgn0261566) protein_coding-promoter-TSS (FBgn0261566) -462 FBgn0261566 FBgn0261566 FBtr0302802 CG42680 protein_coding CTCF-S2-jox2017_R1_peak_243 chr2L 22700091 22700277 + 70 NA Intergenic Intergenic -9176 FBgn0058439 FBgn0058439 FBtr0111233 CG40439 protein_coding CTCF-S2-jox2017_R1_peak_777 chr3L 20326135 20326383 + 70 NA Intergenic Intergenic -9475 FBgn0036970 FBgn0036970 FBtr0331816 Spn77Bc protein_coding CTCF-S2-jox2017_R1_peak_1439 chrX 9343569 9343714 + 70 NA intron (FBgn0261260, intron 2 of 2) protein_coding-intron (FBgn0261260, intron 2 of 14) 46580 FBgn0261260 FBgn0261260 FBtr0302154 mgl protein_coding CTCF-S2-jox2017_R1_peak_310 chr2R 6328839 6329061 + 70 NA intron (FBgn0001122, intron 1 of 6) protein_coding-intron (FBgn0001122, intron 2 of 7) -4057 FBgn0033523 FBgn0033523 FBtr0088314 CG12895 protein_coding CTCF-S2-jox2017_R1_peak_127 chr2L 11035548 11035703 + 69 NA TTS (FBgn0040967) protein_coding-TTS (FBgn0040967) 776 FBgn0040967 FBgn0040967 FBtr0080160 CG18666 protein_coding CTCF-S2-jox2017_R1_peak_1228 chrUextra 10240800 10241035 + 69 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1011 chr3R 16618233 16618378 + 69 NA intron (FBgn0038826, intron 1 of 8) protein_coding-intron (FBgn0038826, intron 5 of 11) -19982 FBgn0046689 FBgn0046689 FBtr0083996 Takl1 protein_coding CTCF-S2-jox2017_R1_peak_905 chr3R 6410062 6410216 + 69 NA TTS (FBgn0001235) protein_coding-TTS (FBgn0001235) 21253 FBgn0001235 FBgn0001235 FBtr0100455 hth protein_coding CTCF-S2-jox2017_R1_peak_447 chr2R 17285934 17286157 + 69 NA exon (FBgn0010415, exon 5 of 7) protein_coding-exon (FBgn0010415, exon 5 of 7) 9144 FBgn0034629 FBgn0034629 FBtr0071607 Acox57D-d protein_coding CTCF-S2-jox2017_R1_peak_1043 chr3R 19222707 19222918 + 69 NA Intergenic Intergenic -5718 FBgn0259193 FBgn0259193 FBtr0299677 Ir94d protein_coding CTCF-S2-jox2017_R1_peak_268 chr2R 2958421 2958604 + 69 NA promoter-TSS (FBgn0050299) tRNA-promoter-TSS (FBgn0050299) -174 FBgn0050299 FBgn0050299 FBtr0089058 tRNA:CR30299 tRNA CTCF-S2-jox2017_R1_peak_149 chr2L 12521044 12521207 + 69 NA intron (FBgn0259176, intron 5 of 7) protein_coding-intron (FBgn0259176, intron 5 of 7) 13017 FBgn0263458 FBgn0263458 FBtr0309757 snoRNA:CG43051-a snoRNA CTCF-S2-jox2017_R1_peak_410 chr2R 14360836 14360981 + 69 NA intron (FBgn0028496, intron 7 of 18) protein_coding-intron (FBgn0028496, intron 7 of 18) -18941 FBgn0034352 FBgn0034352 FBtr0086722 CG17669 protein_coding CTCF-S2-jox2017_R1_peak_1421 chrX 6298850 6299081 + 69 NA Intergenic Intergenic -4832 FBgn0053669 FBgn0053669 FBtr0302419 CG33669 protein_coding CTCF-S2-jox2017_R1_peak_1164 chr4 1101747 1101892 + 69 NA exon (FBgn0024913, exon 3 of 6) protein_coding-exon (FBgn0024913, exon 3 of 6) 3599 FBgn0024913 FBgn0024913 FBtr0089209 Actbeta protein_coding CTCF-S2-jox2017_R1_peak_709 chr3L 15357929 15358088 + 68 NA Intergenic Intergenic 28216 FBgn0036494 FBgn0036494 FBtr0075614 Toll-6 protein_coding CTCF-S2-jox2017_R1_peak_627 chr3L 9460957 9461119 + 68 NA intron (FBgn0052043, intron 1 of 3) protein_coding-intron (FBgn0052043, intron 2 of 4) 4620 FBgn0052043 FBgn0052043 FBtr0333854 CG32043 protein_coding CTCF-S2-jox2017_R1_peak_1408 chrX 5411158 5411303 + 68 NA promoter-TSS (FBgn0029771) protein_coding-promoter-TSS (FBgn0029771) -64 FBgn0029771 FBgn0029771 FBtr0070780 CG12730 protein_coding CTCF-S2-jox2017_R1_peak_1275 chrUextra 25557713 25557865 + 68 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_552 chr3L 3927316 3927464 + 68 NA intron (FBgn0004910, intron 3 of 6) protein_coding-intron (FBgn0004910, intron 3 of 6) -1788 FBgn0004910 FBgn0004910 FBtr0073174 Eip63F-1 protein_coding CTCF-S2-jox2017_R1_peak_450 chr2R 17771892 17772085 + 68 NA intron (FBgn0085397, intron 1 of 6) protein_coding-intron (FBgn0085397, intron 1 of 4) 1171 FBgn0085397 FBgn0085397 FBtr0330338 Fili protein_coding CTCF-S2-jox2017_R1_peak_1338 chrUextra 28901967 28902373 + 68 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1096 chr3R 24459754 24459901 + 68 NA intron (FBgn0039590, intron 1 of 5) protein_coding-intron (FBgn0039590, intron 1 of 5) 958 FBgn0039590 FBgn0039590 FBtr0085319 CG10011 protein_coding CTCF-S2-jox2017_R1_peak_1066 chr3R 21225723 21225900 + 68 NA exon (FBgn0051439, exon 2 of 2) protein_coding-exon (FBgn0051439, exon 2 of 2) 556 FBgn0051439 FBgn0051439 FBtr0084845 Muc96D protein_coding CTCF-S2-jox2017_R1_peak_272 chr2R 3537673 3537831 + 68 NA TTS (FBgn0263077) protein_coding-TTS (FBgn0263077) 3701 FBgn0028687 FBgn0028687 FBtr0088947 Rpt1 protein_coding CTCF-S2-jox2017_R1_peak_487 chr2RHet 148726 148889 + 68 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1305 chrUextra 28583071 28583239 + 68 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_954 chr3R 12176290 12176495 + 68 NA TTS (FBgn0038420) protein_coding-TTS (FBgn0038420) 1266 FBgn0027095 FBgn0027095 FBtr0083283 Manf protein_coding CTCF-S2-jox2017_R1_peak_1111 chr3R 25804610 25804774 + 68 NA Intergenic Intergenic -4482 FBgn0039728 FBgn0039728 FBtr0085545 CG7896 protein_coding CTCF-S2-jox2017_R1_peak_1244 chrUextra 16632111 16632260 + 68 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_856 chr3R 2133714 2133950 + 68 NA exon (FBgn0051556, exon 2 of 2) protein_coding-exon (FBgn0051556, exon 2 of 2) 1186 FBgn0051556 FBgn0051556 FBtr0078612 CG31556 protein_coding CTCF-S2-jox2017_R1_peak_759 chr3L 18909704 18909910 + 68 NA promoter-TSS (FBgn0036831) protein_coding-promoter-TSS (FBgn0036831) -874 FBgn0036831 FBgn0036831 FBtr0075069 CG6839 protein_coding CTCF-S2-jox2017_R1_peak_41 chr2L 3855895 3856100 + 68 NA Intergenic Intergenic -6684 FBgn0031574 FBgn0031574 FBtr0077502 CG3964 protein_coding CTCF-S2-jox2017_R1_peak_1200 chrUextra 95759 95904 + 67 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_798 chr3L 21946244 21946498 + 67 NA Intergenic Intergenic -1839 FBgn0037144 FBgn0037144 FBtr0078475 CG7458 protein_coding CTCF-S2-jox2017_R1_peak_857 chr3R 2242434 2242602 + 67 NA intron (FBgn0264495, intron 2 of 9) protein_coding-intron (FBgn0264495, intron 2 of 8) 9939 FBgn0264495 FBgn0264495 FBtr0303788 gpp protein_coding CTCF-S2-jox2017_R1_peak_135 chr2L 11904311 11904640 + 67 NA intron (FBgn0259225, intron 3 of 9) protein_coding-intron (FBgn0259225, intron 3 of 9) -30030 FBgn0026392 FBgn0026392 FBtr0080278 Or33a protein_coding CTCF-S2-jox2017_R1_peak_1566 chrX 21228951 21229111 + 67 NA promoter-TSS (FBgn0011710) protein_coding-promoter-TSS (FBgn0011710) -272 FBgn0011710 FBgn0011710 FBtr0077198 Sep1 protein_coding CTCF-S2-jox2017_R1_peak_813 chr3L 24163525 24163729 + 67 NA intron (FBgn0011288, intron 4 of 7) protein_coding-intron (FBgn0011288, intron 4 of 7) 96298 FBgn0011288 FBgn0011288 FBtr0304626 Snap25 protein_coding CTCF-S2-jox2017_R1_peak_929 chr3R 9398023 9398173 + 67 NA Intergenic Intergenic -2449 FBgn0264430 FBgn0264430 FBtr0332550 CR43848 ncRNA CTCF-S2-jox2017_R1_peak_1493 chrX 14804777 14804953 + 67 NA promoter-TSS (FBgn0030595) protein_coding-promoter-TSS (FBgn0030595) 13 FBgn0030595 FBgn0030595 FBtr0073977 CG14406 protein_coding CTCF-S2-jox2017_R1_peak_1195 chrU 7544716 7544946 + 67 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_620 chr3L 9060780 9060961 + 67 NA Intergenic Intergenic 4961 FBgn0035959 FBgn0035959 FBtr0331549 CG4911 protein_coding CTCF-S2-jox2017_R1_peak_710 chr3L 15359464 15359620 + 67 NA Intergenic Intergenic 29750 FBgn0036494 FBgn0036494 FBtr0075614 Toll-6 protein_coding CTCF-S2-jox2017_R1_peak_1115 chr3R 26035116 26035262 + 67 NA promoter-TSS (FBgn0000094) protein_coding-promoter-TSS (FBgn0000094) -447 FBgn0039757 FBgn0039757 FBtr0089424 RpS7 protein_coding CTCF-S2-jox2017_R1_peak_1346 chrUextra 28994781 28995031 + 67 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_571 chr3L 5498226 5498421 + 67 NA intron (FBgn0085371, intron 7 of 9) protein_coding-intron (FBgn0085371, intron 8 of 10) 5637 FBgn0085371 FBgn0085371 FBtr0301080 CG34342 protein_coding CTCF-S2-jox2017_R1_peak_35 chr2L 3480584 3480760 + 66 NA TTS (FBgn0031542) protein_coding-TTS (FBgn0031542) 2238 FBgn0261560 FBgn0261560 FBtr0077524 Thor protein_coding CTCF-S2-jox2017_R1_peak_42 chr2L 3986736 3986881 + 66 NA intron (FBgn0051774, intron 2 of 9) protein_coding-intron (FBgn0051774, intron 2 of 8) 4905 FBgn0051774 FBgn0051774 FBtr0308126 fred protein_coding CTCF-S2-jox2017_R1_peak_959 chr3R 12463052 12463236 + 66 NA exon (FBgn0262742, exon 13 of 13) protein_coding-exon (FBgn0262742, exon 13 of 13) -2783 FBgn0015520 FBgn0015520 FBtr0083335 nonA-l protein_coding CTCF-S2-jox2017_R1_peak_791 chr3L 21057176 21057338 + 66 NA exon (FBgn0026179, exon 2 of 7) protein_coding-exon (FBgn0026179, exon 2 of 7) -1695 FBgn0262482 FBgn0262482 FBtr0304821 CG43072 protein_coding CTCF-S2-jox2017_R1_peak_10 chr2L 523190 523335 + 66 NA promoter-TSS (FBgn0003963) protein_coding-promoter-TSS (FBgn0003963) 19318 FBgn0010602 FBgn0010602 FBtr0310029 lwr protein_coding CTCF-S2-jox2017_R1_peak_1134 chr3RHet 1128908 1129180 + 66 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1003 chr3R 15596584 15596878 + 66 NA exon (FBgn0038730, exon 3 of 3) protein_coding-exon (FBgn0038730, exon 3 of 3) 2216 FBgn0038730 FBgn0038730 FBtr0083798 CG6300 protein_coding CTCF-S2-jox2017_R1_peak_601 chr3L 7361708 7361858 + 66 NA promoter-TSS (FBgn0035772) protein_coding-promoter-TSS (FBgn0035772) 577 FBgn0035772 FBgn0035772 FBtr0302546 Sh3beta protein_coding CTCF-S2-jox2017_R1_peak_1430 chrX 7360426 7360667 + 65 NA Intergenic Intergenic -13177 FBgn0262827 FBgn0262827 FBtr0306067 CG43198 protein_coding CTCF-S2-jox2017_R1_peak_81 chr2L 7327013 7327174 + 65 NA Intergenic Intergenic -7708 FBgn0031902 FBgn0031902 FBtr0303251 Wnt6 protein_coding CTCF-S2-jox2017_R1_peak_1303 chrUextra 28556136 28556373 + 65 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1149 chr4 215620 215817 + 65 NA Intergenic Intergenic -5505 FBgn0039890 FBgn0039890 FBtr0308247 CG2316 protein_coding CTCF-S2-jox2017_R1_peak_217 chr2L 19611120 19611278 + 65 NA promoter-TSS (FBgn0000464) protein_coding-promoter-TSS (FBgn0000464) 24576 FBgn0000464 FBgn0000464 FBtr0305950 Lar protein_coding CTCF-S2-jox2017_R1_peak_989 chr3R 13956337 13956690 + 65 NA exon (FBgn0003499, exon 5 of 5) protein_coding-exon (FBgn0003499, exon 5 of 5) -21329 FBgn0038567 FBgn0038567 FBtr0083546 CG14316 protein_coding CTCF-S2-jox2017_R1_peak_1068 chr3R 21426441 21426608 + 65 NA exon (FBgn0011666, exon 7 of 7) protein_coding-exon (FBgn0011666, exon 7 of 7) 8325 FBgn0261287 FBgn0261287 FBtr0084895 ymp protein_coding CTCF-S2-jox2017_R1_peak_140 chr2L 12091280 12091450 + 65 NA Intergenic Intergenic -2406 FBgn0032407 FBgn0032407 FBtr0080327 Pex19 protein_coding CTCF-S2-jox2017_R1_peak_817 chr3L 24488319 24488618 + 65 NA Intergenic Intergenic -38721 FBgn0040045 FBgn0040045 FBtr0307117 CR12460 pseudogene CTCF-S2-jox2017_R1_peak_302 chr2R 5929096 5929288 + 65 NA exon (FBgn0085249, exon 2 of 2) protein_coding-exon (FBgn0085249, exon 2 of 2) 1803 FBgn0085249 FBgn0085249 FBtr0112413 CG34220 protein_coding CTCF-S2-jox2017_R1_peak_92 chr2L 8107913 8108059 + 64 NA exon (FBgn0261822, exon 7 of 7) protein_coding-exon (FBgn0261822, exon 7 of 7) 16015 FBgn0031985 FBgn0031985 FBtr0301229 mon2 protein_coding CTCF-S2-jox2017_R1_peak_1013 chr3R 16627749 16627908 + 64 NA intron (FBgn0038826, intron 7 of 8) protein_coding-intron (FBgn0038826, intron 11 of 11) 14095 FBgn0038827 FBgn0038827 FBtr0083995 Fancd2 protein_coding CTCF-S2-jox2017_R1_peak_421 chr2R 15461323 15461487 + 64 NA intron (FBgn0003435, intron 5 of 10) protein_coding-intron (FBgn0003435, intron 5 of 9) -7733 FBgn0003435 FBgn0003435 FBtr0301610 sm protein_coding CTCF-S2-jox2017_R1_peak_1218 chrUextra 7470339 7470675 + 64 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_855 chr3R 2133199 2133430 + 64 NA exon (FBgn0051556, exon 2 of 2) protein_coding-exon (FBgn0051556, exon 2 of 2) 1704 FBgn0051556 FBgn0051556 FBtr0078612 CG31556 protein_coding CTCF-S2-jox2017_R1_peak_323 chr2R 6984060 6984205 + 63 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -9988 FBgn0262818 FBgn0262818 FBtr0306050 CG43189 protein_coding CTCF-S2-jox2017_R1_peak_100 chr2L 9323254 9323417 + 63 NA Intergenic Intergenic -4409 FBgn0032109 FBgn0032109 FBtr0273186 CG17005 protein_coding CTCF-S2-jox2017_R1_peak_1412 chrX 5507131 5507380 + 63 NA TTS (FBgn0263511) protein_coding-TTS (FBgn0263511) 1173 FBgn0085464 FBgn0085464 FBtr0112736 CG34435 protein_coding CTCF-S2-jox2017_R1_peak_676 chr3L 12879676 12879870 + 63 NA exon (FBgn0036321, exon 1 of 1) protein_coding-exon (FBgn0036321, exon 1 of 1) 1621 FBgn0036321 FBgn0036321 FBtr0075868 CG14120 protein_coding CTCF-S2-jox2017_R1_peak_1531 chrX 17776993 17777146 + 63 NA promoter-TSS (FBgn0030881) protein_coding-promoter-TSS (FBgn0030881) -682 FBgn0030881 FBgn0030881 FBtr0074494 CG12985 protein_coding CTCF-S2-jox2017_R1_peak_233 chr2L 21250841 21251105 + 63 NA intron (FBgn0261239, intron 2 of 7) protein_coding-intron (FBgn0261239, intron 2 of 4) -10195 FBgn0021856 FBgn0021856 FBtr0081482 l(2)k14505 protein_coding CTCF-S2-jox2017_R1_peak_541 chr3L 3490253 3490398 + 63 NA intron (FBgn0259224, intron 2 of 3) protein_coding-intron (FBgn0259224, intron 2 of 3) -5672 FBgn0262484 FBgn0262484 FBtr0304829 CG43074 protein_coding CTCF-S2-jox2017_R1_peak_325 chr2R 7090871 7091070 + 63 NA intron (FBgn0003396, intron 1 of 6) protein_coding-intron (FBgn0003396, intron 2 of 7) 15799 FBgn0033582 FBgn0033582 FBtr0330635 CG9084 protein_coding CTCF-S2-jox2017_R1_peak_245 chr2R 44952 45097 + 63 NA Intergenic Intergenic 26545 FBgn0262115 FBgn0262115 FBtr0111298 CG17683 protein_coding CTCF-S2-jox2017_R1_peak_712 chr3L 15648143 15648319 + 63 NA exon (FBgn0004592, exon 2 of 2) protein_coding-exon (FBgn0004592, exon 2 of 2) 879 FBgn0004592 FBgn0004592 FBtr0075585 Eig71Ee protein_coding CTCF-S2-jox2017_R1_peak_43 chr2L 4123180 4123442 + 63 NA exon (FBgn0014033, exon 3 of 4) protein_coding-exon (FBgn0014033, exon 3 of 4) 1590 FBgn0014033 FBgn0014033 FBtr0077467 Sr-CI protein_coding CTCF-S2-jox2017_R1_peak_1495 chrX 14848059 14848231 + 63 NA TTS (FBgn0030599) protein_coding-TTS (FBgn0030599) 988 FBgn0030599 FBgn0030599 FBtr0303295 CG9030 protein_coding CTCF-S2-jox2017_R1_peak_771 chr3L 20150393 20150538 + 63 NA intron (FBgn0261556, intron 5 of 15) protein_coding-intron (FBgn0261556, intron 5 of 14) -16758 FBgn0036942 FBgn0036942 FBtr0074864 CG7328 protein_coding CTCF-S2-jox2017_R1_peak_1463 chrX 11604608 11604768 + 63 NA promoter-TSS (FBgn0030327) protein_coding-promoter-TSS (FBgn0030327) -704 FBgn0030327 FBgn0030327 FBtr0073620 FucT6 protein_coding CTCF-S2-jox2017_R1_peak_609 chr3L 8374881 8375026 + 63 NA intron (FBgn0001253, intron 4 of 6) protein_coding-intron (FBgn0001253, intron 4 of 6) 9448 FBgn0001253 FBgn0001253 FBtr0076607 ImpE1 protein_coding CTCF-S2-jox2017_R1_peak_1280 chrUextra 26370677 26370924 + 63 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1401 chrX 4985328 4985477 + 63 NA intron (FBgn0086911, intron 2 of 28) protein_coding-intron (FBgn0086911, intron 2 of 29) 5536 FBgn0086911 FBgn0086911 FBtr0070745 rg protein_coding CTCF-S2-jox2017_R1_peak_1033 chr3R 17924639 17924784 + 63 NA intron (FBgn0038930, intron 1 of 2) protein_coding-intron (FBgn0038930, intron 1 of 2) -4425 FBgn0038931 FBgn0038931 FBtr0084181 CG13407 protein_coding CTCF-S2-jox2017_R1_peak_980 chr3R 13594442 13594587 + 63 NA exon (FBgn0262562, exon 17 of 17) protein_coding-exon (FBgn0262562, exon 17 of 17) -6311 FBgn0038542 FBgn0038542 FBtr0083532 TyrR protein_coding CTCF-S2-jox2017_R1_peak_797 chr3L 21861172 21861329 + 63 NA intron (FBgn0262737, intron 1 of 10) protein_coding-intron (FBgn0262737, intron 1 of 9) -13985 FBgn0052449 FBgn0052449 FBtr0078490 tRNA:CR32449 tRNA CTCF-S2-jox2017_R1_peak_1107 chr3R 25517824 25517969 + 63 NA promoter-TSS (FBgn0039683) protein_coding-promoter-TSS (FBgn0039683) -417 FBgn0039683 FBgn0039683 FBtr0085454 dmrt99B protein_coding CTCF-S2-jox2017_R1_peak_114 chr2L 9800537 9800698 + 62 NA intron (FBgn0032151, intron 10 of 13) protein_coding-intron (FBgn0032151, intron 10 of 13) -7510 FBgn0032150 FBgn0032150 FBtr0331286 CG13123 protein_coding CTCF-S2-jox2017_R1_peak_711 chr3L 15596077 15596222 + 62 NA TTS (FBgn0036518) protein_coding-TTS (FBgn0036518) 7337 FBgn0036519 FBgn0036519 FBtr0075591 CG7650 protein_coding CTCF-S2-jox2017_R1_peak_1031 chr3R 17764191 17764353 + 62 NA Intergenic Intergenic 24801 FBgn0038919 FBgn0038919 FBtr0084150 CG17843 protein_coding CTCF-S2-jox2017_R1_peak_211 chr2L 19382419 19382564 + 61 NA TTS (FBgn0032773) protein_coding-TTS (FBgn0032773) 1561 FBgn0032772 FBgn0032772 FBtr0081199 CG17350 protein_coding CTCF-S2-jox2017_R1_peak_805 chr3L 22980937 22981152 + 61 NA exon (FBgn0052457, exon 1 of 1) protein_coding-exon (FBgn0052457, exon 1 of 1) 302 FBgn0052457 FBgn0052457 FBtr0300620 CG32457 protein_coding CTCF-S2-jox2017_R1_peak_1404 chrX 5071379 5071524 + 61 NA TTS (FBgn0029746) protein_coding-TTS (FBgn0029746) 4951 FBgn0029747 FBgn0029747 FBtr0070759 CG5062 protein_coding CTCF-S2-jox2017_R1_peak_168 chr2L 14781913 14782071 + 61 NA exon (FBgn0028867, exon 4 of 4) pseudogene-exon (FBgn0028867, exon 4 of 4) 1118 FBgn0028867 FBgn0028867 FBtr0100604 CR15280 pseudogene CTCF-S2-jox2017_R1_peak_930 chr3R 9465855 9466000 + 61 NA exon (FBgn0263396, exon 5 of 5) protein_coding-exon (FBgn0263396, exon 5 of 5) 6099 FBgn0263396 FBgn0263396 FBtr0082854 sqd protein_coding CTCF-S2-jox2017_R1_peak_280 chr2R 4222877 4223086 + 61 NA intron (FBgn0261588, intron 1 of 10) protein_coding-intron (FBgn0261588, intron 1 of 10) 7976 FBgn0261588 FBgn0261588 FBtr0302918 pdm3 protein_coding CTCF-S2-jox2017_R1_peak_774 chr3L 20185086 20185231 + 61 NA exon (FBgn0261556, exon 2 of 15) protein_coding-exon (FBgn0261556, exon 2 of 15) 3536 FBgn0036945 FBgn0036945 FBtr0074821 CG6981 protein_coding CTCF-S2-jox2017_R1_peak_1455 chrX 10631430 10631585 + 61 NA intron (FBgn0052676, intron 1 of 3) protein_coding-intron (FBgn0052676, intron 1 of 3) -7028 FBgn0003204 FBgn0003204 FBtr0071496 ras protein_coding CTCF-S2-jox2017_R1_peak_1198 chrU 9934894 9935053 + 61 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1055 chr3R 20412374 20412528 + 61 NA intron (FBgn0263490, intron 1 of 4) protein_coding-intron (FBgn0263490, intron 1 of 5) 1076 FBgn0263490 FBgn0263490 FBtr0304914 mld protein_coding CTCF-S2-jox2017_R1_peak_984 chr3R 13710665 13710841 + 61 NA intron (FBgn0053547, intron 17 of 24) protein_coding-intron (FBgn0053547, intron 18 of 26) -21433 FBgn0038558 FBgn0038558 FBtr0308497 CG12347 protein_coding CTCF-S2-jox2017_R1_peak_1172 chrU 625901 626054 + 61 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_772 chr3L 20161645 20161801 + 61 NA exon (FBgn0261556, exon 3 of 15) protein_coding-exon (FBgn0261556, exon 3 of 15) 16762 FBgn0261556 FBgn0261556 FBtr0332699 CG42674 protein_coding CTCF-S2-jox2017_R1_peak_1288 chrUextra 27370442 27370687 + 61 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1137 chr3RHet 1771854 1772075 + 61 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_776 chr3L 20319379 20319625 + 61 NA Intergenic Intergenic -3193 FBgn0036972 FBgn0036972 FBtr0074844 CG6434 protein_coding CTCF-S2-jox2017_R1_peak_802 chr3L 22901051 22901196 + 61 NA Intergenic Intergenic -2468 FBgn0037206 FBgn0037206 FBtr0331397 CG12768 protein_coding CTCF-S2-jox2017_R1_peak_762 chr3L 19125776 19125987 + 61 NA intron (FBgn0036851, intron 2 of 4) protein_coding-intron (FBgn0036851, intron 2 of 4) -3116 FBgn0052203 FBgn0052203 FBtr0110771 Spn75F protein_coding CTCF-S2-jox2017_R1_peak_169 chr2L 14936308 14936473 + 61 NA intron (FBgn0259213, intron 6 of 19) protein_coding-intron (FBgn0259213, intron 6 of 19) 11655 FBgn0028887 FBgn0028887 FBtr0080675 CG3491 protein_coding CTCF-S2-jox2017_R1_peak_445 chr2R 17146208 17146376 + 61 NA intron (FBgn0085426, intron 2 of 8) protein_coding-intron (FBgn0085426, intron 1 of 8) 2973 FBgn0085426 FBgn0085426 FBtr0305983 Rgk3 protein_coding CTCF-S2-jox2017_R1_peak_1136 chr3RHet 1632127 1632333 + 60 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_653 chr3L 11034403 11034621 + 60 NA intron (FBgn0263776, intron 1 of 6) protein_coding-intron (FBgn0263776, intron 1 of 5) 9959 FBgn0263776 FBgn0263776 FBtr0310568 CG43693 protein_coding CTCF-S2-jox2017_R1_peak_865 chr3R 2750136 2750288 + 60 NA intron (FBgn0260642, intron 2 of 6) protein_coding-intron (FBgn0260642, intron 1 of 4) 8350 FBgn0260642 FBgn0260642 FBtr0081646 Antp protein_coding CTCF-S2-jox2017_R1_peak_1403 chrX 5070758 5070903 + 60 NA TTS (FBgn0029746) protein_coding-TTS (FBgn0029746) 5572 FBgn0029747 FBgn0029747 FBtr0070759 CG5062 protein_coding CTCF-S2-jox2017_R1_peak_304 chr2R 6047598 6047744 + 60 NA intron (FBgn0033494, intron 1 of 16) protein_coding-intron (FBgn0033494, intron 1 of 16) -1582 FBgn0033495 FBgn0033495 FBtr0088370 CG12214 protein_coding CTCF-S2-jox2017_R1_peak_621 chr3L 9156976 9157157 + 60 NA intron (FBgn0004244, intron 4 of 9) protein_coding-intron (FBgn0004244, intron 3 of 8) 18183 FBgn0004244 FBgn0004244 FBtr0309054 Rdl protein_coding CTCF-S2-jox2017_R1_peak_94 chr2L 8259219 8259364 + 60 NA promoter-TSS (FBgn0262374) pre_miRNA-promoter-TSS (FBgn0262374) -646 FBgn0262374 FBgn0262374 FBtr0304202 mir-2b-1 pre_miRNA CTCF-S2-jox2017_R1_peak_486 chr2RHet 118253 118412 + 60 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_276 chr2R 4125195 4125404 + 60 NA promoter-TSS (FBgn0013726) protein_coding-promoter-TSS (FBgn0013726) -65 FBgn0013726 FBgn0013726 FBtr0088793 pnut protein_coding CTCF-S2-jox2017_R1_peak_1142 chr3RHet 2340018 2340178 + 59 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_84 chr2L 7599234 7599379 + 59 NA Intergenic Intergenic -6294 FBgn0031925 FBgn0031925 FBtr0079471 Cyp4d21 protein_coding CTCF-S2-jox2017_R1_peak_1103 chr3R 25376468 25376613 + 59 NA Intergenic Intergenic -5569 FBgn0000492 FBgn0000492 FBtr0085441 Dr protein_coding CTCF-S2-jox2017_R1_peak_841 chr3R 697333 697559 + 59 NA Intergenic Intergenic 6809 FBgn0020280 FBgn0020280 FBtr0078852 laf protein_coding CTCF-S2-jox2017_R1_peak_170 chr2L 15060854 15061136 + 59 NA promoter-TSS (FBgn0010422) protein_coding-promoter-TSS (FBgn0010422) -238 FBgn0010422 FBgn0010422 FBtr0080722 TfIIS protein_coding CTCF-S2-jox2017_R1_peak_1009 chr3R 16435474 16435624 + 59 NA intron (FBgn0023097, intron 7 of 9) protein_coding-intron (FBgn0023097, intron 7 of 9) -4995 FBgn0051506 FBgn0051506 FBtr0083943 tRNA:CR31506 tRNA CTCF-S2-jox2017_R1_peak_34 chr2L 3478266 3478411 + 59 NA promoter-TSS (FBgn0261560) protein_coding-promoter-TSS (FBgn0261560) -96 FBgn0261560 FBgn0261560 FBtr0077524 Thor protein_coding CTCF-S2-jox2017_R1_peak_629 chr3L 9601655 9601890 + 59 NA exon (FBgn0036017, exon 13 of 18) protein_coding-exon (FBgn0036017, exon 13 of 18) 5071 FBgn0036017 FBgn0036017 FBtr0304601 CG3280 protein_coding CTCF-S2-jox2017_R1_peak_981 chr3R 13703595 13703759 + 59 NA TTS (FBgn0053547) protein_coding-TTS (FBgn0053547) -28509 FBgn0038558 FBgn0038558 FBtr0308497 CG12347 protein_coding CTCF-S2-jox2017_R1_peak_660 chr3L 11352036 11352208 + 59 NA Intergenic Intergenic 5863 FBgn0036155 FBgn0036155 FBtr0333387 CG6163 protein_coding CTCF-S2-jox2017_R1_peak_1388 chrX 3705411 3705812 + 59 NA promoter-TSS (FBgn0000542) protein_coding-promoter-TSS (FBgn0000542) 7393 FBgn0061173 FBgn0061173 FBtr0070602 fd3F protein_coding CTCF-S2-jox2017_R1_peak_615 chr3L 8759385 8759549 + 59 NA promoter-TSS (FBgn0261259) protein_coding-promoter-TSS (FBgn0261259) 10378 FBgn0035924 FBgn0035924 FBtr0076576 CG6576 protein_coding CTCF-S2-jox2017_R1_peak_525 chr3L 2128418 2128579 + 59 NA exon (FBgn0052311, exon 16 of 20) protein_coding-exon (FBgn0052311, exon 16 of 20) -12887 FBgn0086906 FBgn0086906 FBtr0072848 sls protein_coding CTCF-S2-jox2017_R1_peak_73 chr2L 6587207 6587377 + 59 NA intron (FBgn0031835, intron 1 of 15) protein_coding-intron (FBgn0031835, intron 1 of 15) 13774 FBgn0031835 FBgn0031835 FBtr0089641 CG11319 protein_coding CTCF-S2-jox2017_R1_peak_116 chr2L 9809602 9809781 + 59 NA intron (FBgn0032151, intron 6 of 13) protein_coding-intron (FBgn0032151, intron 5 of 13) -16584 FBgn0032150 FBgn0032150 FBtr0331286 CG13123 protein_coding CTCF-S2-jox2017_R1_peak_1159 chr4 739336 739510 + 59 NA intron (FBgn0005558, intron 7 of 8) protein_coding-intron (FBgn0005558, intron 6 of 7) -5607 FBgn0005666 FBgn0005666 FBtr0301341 bt protein_coding CTCF-S2-jox2017_R1_peak_1525 chrX 17473883 17474059 + 59 NA promoter-TSS (FBgn0030847) protein_coding-promoter-TSS (FBgn0030847) -3837 FBgn0028343 FBgn0028343 FBtr0301415 l(1)G0222 protein_coding CTCF-S2-jox2017_R1_peak_1326 chrUextra 28774298 28774443 + 58 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_584 chr3L 6590470 6590634 + 58 NA exon (FBgn0002926, exon 7 of 15) protein_coding-exon (FBgn0002926, exon 7 of 15) 5914 FBgn0002926 FBgn0002926 FBtr0076984 ndl protein_coding CTCF-S2-jox2017_R1_peak_567 chr3L 5157010 5157332 + 58 NA intron (FBgn0052423, intron 7 of 11) protein_coding-intron (FBgn0052423, intron 6 of 10) 11393 FBgn0010747 FBgn0010747 FBtr0077169 Srp54k protein_coding CTCF-S2-jox2017_R1_peak_649 chr3L 10891128 10891273 + 58 NA exon (FBgn0036111, exon 1 of 4) protein_coding-exon (FBgn0036111, exon 1 of 4) 1023 FBgn0036111 FBgn0036111 FBtr0076251 Aps protein_coding CTCF-S2-jox2017_R1_peak_1316 chrUextra 28676944 28677209 + 58 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1425 chrX 6909216 6909368 + 58 NA TTS (FBgn0029929) protein_coding-TTS (FBgn0029929) 1356 FBgn0029929 FBgn0029929 FBtr0071009 CG4593 protein_coding CTCF-S2-jox2017_R1_peak_1357 chrX 1194057 1194210 + 58 NA intron (FBgn0025641, intron 3 of 11) protein_coding-intron (FBgn0025641, intron 3 of 11) -1713 FBgn0052811 FBgn0052811 FBtr0302877 CG32811 protein_coding CTCF-S2-jox2017_R1_peak_353 chr2R 9304171 9304321 + 58 NA exon (FBgn0259221, exon 10 of 11) protein_coding-exon (FBgn0259221, exon 10 of 11) -2127 FBgn0260475 FBgn0260475 FBtr0087715 CG30059 protein_coding CTCF-S2-jox2017_R1_peak_604 chr3L 7721573 7721732 + 58 NA exon (FBgn0035813, exon 1 of 1) protein_coding-exon (FBgn0035813, exon 1 of 1) -2110 FBgn0035812 FBgn0035812 FBtr0076814 CG7457 protein_coding CTCF-S2-jox2017_R1_peak_758 chr3L 18907536 18907724 + 58 NA promoter-TSS (FBgn0036830) protein_coding-promoter-TSS (FBgn0036830) -380 FBgn0036830 FBgn0036830 FBtr0309797 CG14077 protein_coding CTCF-S2-jox2017_R1_peak_1263 chrUextra 22840195 22840344 + 58 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_327 chr2R 7296501 7296668 + 58 NA TTS (FBgn0033633) protein_coding-TTS (FBgn0033633) 360 FBgn0050026 FBgn0050026 FBtr0300922 CG30026 protein_coding CTCF-S2-jox2017_R1_peak_1330 chrUextra 28833588 28833807 + 58 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1446 chrX 9790168 9790328 + 58 NA Intergenic Intergenic -7055 FBgn0030161 FBgn0030161 FBtr0112967 CG15249 protein_coding CTCF-S2-jox2017_R1_peak_554 chr3L 4192819 4192992 + 58 NA TTS (FBgn0040696) protein_coding-TTS (FBgn0040696) -1663 FBgn0263110 FBgn0263110 FBtr0307312 CG43367 protein_coding CTCF-S2-jox2017_R1_peak_1016 chr3R 16775450 16775654 + 57 NA intron (FBgn0002921, intron 1 of 9) protein_coding-intron (FBgn0002921, intron 1 of 9) 1116 FBgn0002921 FBgn0002921 FBtr0089516 Atpalpha protein_coding CTCF-S2-jox2017_R1_peak_297 chr2R 5410243 5410416 + 57 NA intron (FBgn0259246, intron 1 of 13) protein_coding-intron (FBgn0259246, intron 8 of 21) 19036 FBgn0259246 FBgn0259246 FBtr0305059 brp protein_coding CTCF-S2-jox2017_R1_peak_1503 chrX 15297025 15297194 + 57 NA intron (FBgn0263257, intron 3 of 17) protein_coding-intron (FBgn0263257, intron 1 of 14) 1389 FBgn0263257 FBgn0263257 FBtr0308310 cngl protein_coding CTCF-S2-jox2017_R1_peak_1255 chrUextra 20554763 20555031 + 57 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1208 chrUextra 4202885 4203132 + 57 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_214 chr2L 19425881 19426149 + 57 NA promoter-TSS (FBgn0032780) protein_coding-promoter-TSS (FBgn0032780) -307 FBgn0032780 FBgn0032780 FBtr0081203 CG13085 protein_coding CTCF-S2-jox2017_R1_peak_568 chr3L 5195057 5195207 + 57 NA promoter-TSS (FBgn0052423) protein_coding-promoter-TSS (FBgn0052423) -17235 FBgn0052423 FBgn0052423 FBtr0301599 shep protein_coding CTCF-S2-jox2017_R1_peak_1170 chrU 501153 501317 + 57 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_555 chr3L 4275155 4275343 + 57 NA exon (FBgn0035522, exon 6 of 6) protein_coding-exon (FBgn0035522, exon 6 of 6) -2713 FBgn0035523 FBgn0035523 FBtr0333566 CG1311 protein_coding CTCF-S2-jox2017_R1_peak_226 chr2L 20385444 20385595 + 56 NA exon (FBgn0032857, exon 2 of 2) protein_coding-exon (FBgn0032857, exon 2 of 2) -3164 FBgn0032856 FBgn0032856 FBtr0081371 CG16798 protein_coding CTCF-S2-jox2017_R1_peak_474 chr2R 19848398 19848647 + 56 NA TTS (FBgn0034942) protein_coding-TTS (FBgn0034942) 1512 FBgn0034942 FBgn0034942 FBtr0306797 CG13566 protein_coding CTCF-S2-jox2017_R1_peak_39 chr2L 3785524 3785669 + 56 NA promoter-TSS (FBgn0051958) protein_coding-promoter-TSS (FBgn0051958) -223 FBgn0051958 FBgn0051958 FBtr0077495 CG31958 protein_coding CTCF-S2-jox2017_R1_peak_750 chr3L 18658681 18658861 + 56 NA intron (FBgn0036801, intron 8 of 8) protein_coding-intron (FBgn0036801, intron 8 of 8) -1690 FBgn0260027 FBgn0260027 FBtr0300582 CG42495 protein_coding CTCF-S2-jox2017_R1_peak_278 chr2R 4136956 4137113 + 56 NA Intergenic Intergenic -4727 FBgn0033277 FBgn0033277 FBtr0088794 CG14760 protein_coding CTCF-S2-jox2017_R1_peak_968 chr3R 12759964 12760283 + 56 NA exon (FBgn0000015, exon 1 of 5) protein_coding-exon (FBgn0000015, exon 1 of 5) -2788 FBgn0000015 FBgn0000015 FBtr0330709 Abd-B protein_coding CTCF-S2-jox2017_R1_peak_1185 chrU 2466889 2467108 + 56 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_873 chr3R 3284326 3284474 + 56 NA Intergenic Intergenic 6618 FBgn0011998 FBgn0011998 FBtr0081536 tRNA:V3b:84Da tRNA CTCF-S2-jox2017_R1_peak_1470 chrX 12646083 12646228 + 56 NA Intergenic Intergenic 5805 FBgn0030418 FBgn0030418 FBtr0333722 CG4004 protein_coding CTCF-S2-jox2017_R1_peak_333 chr2R 7477198 7477343 + 56 NA exon (FBgn0033636, exon 6 of 17) protein_coding-exon (FBgn0033636, exon 6 of 17) -1434 FBgn0082993 FBgn0082993 FBtr0113499 snoRNA:Psi28S-1936 snoRNA CTCF-S2-jox2017_R1_peak_1294 chrUextra 28172171 28172414 + 55 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1286 chrUextra 27254450 27254595 + 55 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_72 chr2L 6584516 6584661 + 55 NA intron (FBgn0031835, intron 2 of 15) protein_coding-intron (FBgn0031835, intron 2 of 15) 16478 FBgn0031835 FBgn0031835 FBtr0089641 CG11319 protein_coding CTCF-S2-jox2017_R1_peak_937 chr3R 10656159 10656312 + 55 NA exon (FBgn0053555, exon 2 of 14) protein_coding-exon (FBgn0053555, exon 2 of 14) -14530 FBgn0038266 FBgn0038266 FBtr0082994 CG3610 protein_coding CTCF-S2-jox2017_R1_peak_827 chr3LHet 1690975 1691160 + 55 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1073 chr3R 21963100 21963253 + 55 NA TTS (FBgn0039415) protein_coding-TTS (FBgn0039415) 4300 FBgn0039415 FBgn0039415 FBtr0084987 CG6142 protein_coding CTCF-S2-jox2017_R1_peak_1520 chrX 16985163 16985336 + 55 NA promoter-TSS (FBgn0030816) protein_coding-promoter-TSS (FBgn0030816) -638 FBgn0030816 FBgn0030816 FBtr0074383 CG16700 protein_coding CTCF-S2-jox2017_R1_peak_1133 chr3RHet 1039366 1039670 + 55 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1480 chrX 13295431 13295576 + 55 NA TTS (FBgn0030482) protein_coding-TTS (FBgn0030482) 1393 FBgn0030483 FBgn0030483 FBtr0073788 CG12725 protein_coding CTCF-S2-jox2017_R1_peak_1545 chrX 18598082 18598228 + 55 NA Intergenic Intergenic -5743 FBgn0030949 FBgn0030949 FBtr0074604 Cyp308a1 protein_coding CTCF-S2-jox2017_R1_peak_1297 chrUextra 28408022 28408167 + 55 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1162 chr4 856585 856775 + 55 NA TTS (FBgn0039937) protein_coding-TTS (FBgn0039937) -2041 FBgn0039938 FBgn0039938 FBtr0089252 Sox102F protein_coding CTCF-S2-jox2017_R1_peak_1216 chrUextra 7328771 7329002 + 55 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_990 chr3R 14093293 14093440 + 55 NA promoter-TSS (FBgn0038592) protein_coding-promoter-TSS (FBgn0038592) -144 FBgn0038592 FBgn0038592 FBtr0083571 CG18599 protein_coding CTCF-S2-jox2017_R1_peak_1314 chrUextra 28641308 28641453 + 55 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_535 chr3L 2867806 2868050 + 55 NA intron (FBgn0263392, intron 3 of 10) protein_coding-intron (FBgn0263392, intron 3 of 9) 11230 FBgn0263392 FBgn0263392 FBtr0309119 CG43444 protein_coding CTCF-S2-jox2017_R1_peak_1291 chrUextra 27757081 27757298 + 55 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1331 chrUextra 28840027 28840173 + 55 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_265 chr2R 2615564 2615709 + 54 NA exon (FBgn0010482, exon 11 of 11) protein_coding-exon (FBgn0010482, exon 11 of 11) -8598 FBgn0033097 FBgn0033097 FBtr0306802 CG9430 protein_coding CTCF-S2-jox2017_R1_peak_415 chr2R 14624718 14624865 + 54 NA intron (FBgn0053147, intron 3 of 8) protein_coding-intron (FBgn0053147, intron 3 of 8) -1206 FBgn0053998 FBgn0053998 FBtr0100053 CG33998 protein_coding CTCF-S2-jox2017_R1_peak_1151 chr4 374602 374758 + 54 NA intron (FBgn0259214, intron 5 of 16) protein_coding-intron (FBgn0259214, intron 5 of 17) 4603 FBgn0259214 FBgn0259214 FBtr0300559 PMCA protein_coding CTCF-S2-jox2017_R1_peak_994 chr3R 14796046 14796329 + 54 NA intron (FBgn0263983, intron 6 of 14) protein_coding-intron (FBgn0261262, intron 10 of 18) 8344 FBgn0038665 FBgn0038665 FBtr0304691 CG12269 protein_coding CTCF-S2-jox2017_R1_peak_1008 chr3R 15955369 15955549 + 54 NA Intergenic Intergenic 8677 FBgn0045471 FBgn0045471 FBtr0083865 Gr92a protein_coding CTCF-S2-jox2017_R1_peak_284 chr2R 4284196 4284382 + 54 NA TTS (FBgn0261588) protein_coding-TTS (FBgn0261588) 14939 FBgn0033289 FBgn0033289 FBtr0088764 CG2121 protein_coding CTCF-S2-jox2017_R1_peak_804 chr3L 22950263 22950424 + 54 NA Intergenic Intergenic -1941 FBgn0052461 FBgn0052461 FBtr0078567 CG32461 protein_coding CTCF-S2-jox2017_R1_peak_895 chr3R 5835177 5835359 + 54 NA exon (FBgn0053208, exon 15 of 24) protein_coding-exon (FBgn0053208, exon 15 of 24) -8271 FBgn0037773 FBgn0037773 FBtr0300257 CG5359 protein_coding CTCF-S2-jox2017_R1_peak_431 chr2R 16643893 16644038 + 54 NA Intergenic Intergenic 3855 FBgn0085231 FBgn0085231 FBtr0112395 CG34202 protein_coding CTCF-S2-jox2017_R1_peak_576 chr3L 5813944 5814159 + 54 NA intron (FBgn0003984, intron 1 of 5) protein_coding-intron (FBgn0003984, intron 1 of 5) -7858 FBgn0035640 FBgn0035640 FBtr0077113 mad2 protein_coding CTCF-S2-jox2017_R1_peak_1453 chrX 10540293 10540540 + 54 NA intron (FBgn0052677, intron 2 of 12) protein_coding-intron (FBgn0052677, intron 2 of 14) -11297 FBgn0030223 FBgn0030223 FBtr0071492 CG2111 protein_coding CTCF-S2-jox2017_R1_peak_93 chr2L 8184957 8185266 + 53 NA intron (FBgn0031993, intron 20 of 27) protein_coding-intron (FBgn0031993, intron 22 of 29) 4889 FBgn0013442 FBgn0013442 FBtr0273229 fos28F protein_coding CTCF-S2-jox2017_R1_peak_1479 chrX 13223631 13223859 + 53 NA promoter-TSS (FBgn0040309) protein_coding-promoter-TSS (FBgn0040309) -687 FBgn0040309 FBgn0040309 FBtr0073764 Jafrac1 protein_coding CTCF-S2-jox2017_R1_peak_603 chr3L 7594679 7594824 + 53 NA intron (FBgn0035802, intron 1 of 16) protein_coding-intron (FBgn0035802, intron 1 of 16) 4421 FBgn0035802 FBgn0035802 FBtr0089851 CG33275 protein_coding CTCF-S2-jox2017_R1_peak_464 chr2R 19107945 19108193 + 53 NA Intergenic Intergenic -9007 FBgn0034834 FBgn0034834 FBtr0072052 LS2 protein_coding CTCF-S2-jox2017_R1_peak_1312 chrUextra 28632293 28632443 + 53 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_546 chr3L 3758905 3759112 + 53 NA exon (FBgn0052264, exon 1 of 7) protein_coding-exon (FBgn0052264, exon 1 of 7) -3807 FBgn0035458 FBgn0035458 FBtr0303094 CG10858 protein_coding CTCF-S2-jox2017_R1_peak_1437 chrX 8898779 8898937 + 53 NA intron (FBgn0261549, intron 3 of 15) protein_coding-intron (FBgn0261549, intron 3 of 15) -11407 FBgn0262369 FBgn0262369 FBtr0304179 mir-31b pre_miRNA CTCF-S2-jox2017_R1_peak_1466 chrX 11929349 11929520 + 53 NA TTS (FBgn0030369) protein_coding-TTS (FBgn0030369) 2769 FBgn0030369 FBgn0030369 FBtr0073623 Cyp318a1 protein_coding CTCF-S2-jox2017_R1_peak_1534 chrX 18042028 18042241 + 53 NA Intergenic Intergenic -7267 FBgn0030897 FBgn0030897 FBtr0100239 Frq1 protein_coding CTCF-S2-jox2017_R1_peak_730 chr3L 16955206 16955380 + 53 NA intron (FBgn0010352, intron 6 of 12) protein_coding-intron (FBgn0010352, intron 5 of 10) 7258 FBgn0010352 FBgn0010352 FBtr0075269 Nc73EF protein_coding CTCF-S2-jox2017_R1_peak_98 chr2L 9033209 9033366 + 52 NA Intergenic Intergenic -7883 FBgn0032090 FBgn0032090 FBtr0079778 CG9582 protein_coding CTCF-S2-jox2017_R1_peak_862 chr3R 2535442 2535606 + 52 NA exon (FBgn0051481, exon 8 of 9) protein_coding-exon (FBgn0051481, exon 8 of 9) 5720 FBgn0004783 FBgn0004783 FBtr0081691 Ccp84Aa protein_coding CTCF-S2-jox2017_R1_peak_1189 chrU 3238064 3238240 + 52 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_142 chr2L 12274583 12274790 + 52 NA intron (FBgn0000114, intron 2 of 8) protein_coding-intron (FBgn0000114, intron 3 of 11) -64162 FBgn0051862 FBgn0051862 FBtr0080350 CG31862 protein_coding CTCF-S2-jox2017_R1_peak_1178 chrU 1235939 1236172 + 52 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_124 chr2L 10706912 10707100 + 52 NA promoter-TSS (FBgn0024740) protein_coding-promoter-TSS (FBgn0024740) -816 FBgn0024740 FBgn0024740 FBtr0080123 Lip2 protein_coding CTCF-S2-jox2017_R1_peak_1065 chr3R 21225336 21225481 + 52 NA exon (FBgn0051439, exon 2 of 2) protein_coding-exon (FBgn0051439, exon 2 of 2) 959 FBgn0051439 FBgn0051439 FBtr0084845 Muc96D protein_coding CTCF-S2-jox2017_R1_peak_1163 chr4 947030 947175 + 52 NA exon (FBgn0023213, exon 4 of 16) protein_coding-exon (FBgn0023213, exon 4 of 16) 4245 FBgn0023213 FBgn0023213 FBtr0289951 eIF4G protein_coding CTCF-S2-jox2017_R1_peak_647 chr3L 10856265 10856410 + 52 NA intron (FBgn0026160, intron 1 of 10) protein_coding-intron (FBgn0026160, intron 1 of 10) 4833 FBgn0026160 FBgn0026160 FBtr0076268 tna protein_coding CTCF-S2-jox2017_R1_peak_1264 chrUextra 23067255 23067518 + 52 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1540 chrX 18500851 18501057 + 52 NA exon (FBgn0030940, exon 6 of 6) protein_coding-exon (FBgn0030940, exon 6 of 6) 10668 FBgn0030940 FBgn0030940 FBtr0074618 CG15040 protein_coding CTCF-S2-jox2017_R1_peak_1045 chr3R 19483594 19483810 + 52 NA intron (FBgn0051145, intron 2 of 13) protein_coding-intron (FBgn0051145, intron 2 of 13) 11676 FBgn0051145 FBgn0051145 FBtr0290057 CG31145 protein_coding CTCF-S2-jox2017_R1_peak_1232 chrUextra 11425909 11426166 + 52 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_191 chr2L 17557874 17558019 + 52 NA Intergenic Intergenic -2181 FBgn0032650 FBgn0032650 FBtr0080990 CG7094 protein_coding CTCF-S2-jox2017_R1_peak_1145 chr3RHet 2505297 2505477 + 51 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_413 chr2R 14462066 14462215 + 51 NA intron (FBgn0050115, intron 1 of 8) protein_coding-intron (FBgn0050115, intron 1 of 7) 35050 FBgn0085419 FBgn0085419 FBtr0112633 Rgk2 protein_coding CTCF-S2-jox2017_R1_peak_1019 chr3R 16810552 16810702 + 51 NA intron (FBgn0013995, intron 1 of 10) protein_coding-intron (FBgn0013995, intron 1 of 8) 3031 FBgn0263400 FBgn0263400 FBtr0309177 CG43446 protein_coding CTCF-S2-jox2017_R1_peak_194 chr2L 17864460 17864605 + 51 NA exon (FBgn0262018, exon 2 of 15) protein_coding-exon (FBgn0262018, exon 2 of 15) 10715 FBgn0262018 FBgn0262018 FBtr0303836 CadN2 protein_coding CTCF-S2-jox2017_R1_peak_524 chr3L 1861418 1861563 + 51 NA exon (FBgn0004636, exon 2 of 2) protein_coding-exon (FBgn0004636, exon 2 of 2) 326 FBgn0004636 FBgn0004636 FBtr0332671 R protein_coding CTCF-S2-jox2017_R1_peak_940 chr3R 10800332 10800477 + 51 NA Intergenic Intergenic -40088 FBgn0038280 FBgn0038280 FBtr0083023 CG14861 protein_coding CTCF-S2-jox2017_R1_peak_1332 chrUextra 28855757 28855998 + 51 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1369 chrX 2553658 2553803 + 51 NA exon (FBgn0003371, exon 1 of 9) protein_coding-exon (FBgn0003371, exon 1 of 9) 16680 FBgn0003371 FBgn0003371 FBtr0112828 sgg protein_coding CTCF-S2-jox2017_R1_peak_1059 chr3R 20519203 20519409 + 51 NA intron (FBgn0003429, intron 12 of 22) protein_coding-intron (FBgn0003429, intron 13 of 24) -21200 FBgn0039217 FBgn0039217 FBtr0084687 CG13627 protein_coding CTCF-S2-jox2017_R1_peak_386 chr2R 11703526 11703833 + 51 NA intron (FBgn0083919, intron 1 of 15) protein_coding-intron (FBgn0083919, intron 1 of 15) -1229 FBgn0083919 FBgn0083919 FBtr0329910 Zasp52 protein_coding CTCF-S2-jox2017_R1_peak_549 chr3L 3841980 3842134 + 51 NA TTS (FBgn0004875) protein_coding-TTS (FBgn0004875) -4149 FBgn0013751 FBgn0013751 FBtr0330071 Awh protein_coding CTCF-S2-jox2017_R1_peak_1030 chr3R 17609993 17610138 + 51 NA Intergenic Intergenic -1809 FBgn0003867 FBgn0003867 FBtr0084165 tsl protein_coding CTCF-S2-jox2017_R1_peak_384 chr2R 11667635 11667799 + 51 NA TTS (FBgn0083919) protein_coding-TTS (FBgn0083919) 34733 FBgn0083919 FBgn0083919 FBtr0329910 Zasp52 protein_coding CTCF-S2-jox2017_R1_peak_551 chr3L 3882476 3882640 + 50 NA Intergenic Intergenic 2243 FBgn0264518 FBgn0264518 FBtr0333143 CR43917 ncRNA CTCF-S2-jox2017_R1_peak_1367 chrX 2248271 2248437 + 50 NA promoter-TSS (FBgn0003159) protein_coding-promoter-TSS (FBgn0003159) 405 FBgn0003159 FBgn0003159 FBtr0070402 ptr protein_coding CTCF-S2-jox2017_R1_peak_925 chr3R 8850296 8850480 + 50 NA intron (FBgn0020496, intron 6 of 7) protein_coding-intron (FBgn0020496, intron 6 of 7) 5630 FBgn0038111 FBgn0038111 FBtr0113229 CG12360 protein_coding CTCF-S2-jox2017_R1_peak_1261 chrUextra 22459643 22459890 + 50 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1429 chrX 7316677 7316826 + 50 NA Intergenic Intergenic 2124 FBgn0040922 FBgn0040922 FBtr0071060 CG15036 protein_coding CTCF-S2-jox2017_R1_peak_1017 chr3R 16799650 16799835 + 50 NA exon (FBgn0002921, exon 10 of 10) protein_coding-exon (FBgn0002921, exon 10 of 10) -4263 FBgn0013995 FBgn0013995 FBtr0309202 Calx protein_coding CTCF-S2-jox2017_R1_peak_1192 chrU 4024170 4024320 + 50 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_457 chr2R 18223346 18223504 + 50 NA intron (FBgn0034720, intron 9 of 11) protein_coding-intron (FBgn0034720, intron 11 of 13) 2794 FBgn0085237 FBgn0085237 FBtr0112401 CG34208 protein_coding CTCF-S2-jox2017_R1_peak_533 chr3L 2820133 2820310 + 50 NA exon (FBgn0263392, exon 1 of 7) protein_coding-exon (FBgn0263392, exon 1 of 7) 37966 FBgn0035375 FBgn0035375 FBtr0333442 pgant6 protein_coding CTCF-S2-jox2017_R1_peak_779 chr3L 20463643 20463844 + 50 NA TTS (FBgn0052428) protein_coding-TTS (FBgn0052428) 2729 FBgn0052428 FBgn0052428 FBtr0078222 CG32428 protein_coding CTCF-S2-jox2017_R1_peak_230 chr2L 20835635 20835804 + 50 NA promoter-TSS (FBgn0032891) protein_coding-promoter-TSS (FBgn0032891) -112 FBgn0032891 FBgn0032891 FBtr0290042 Oseg5 protein_coding CTCF-S2-jox2017_R1_peak_1465 chrX 11876049 11876194 + 50 NA promoter-TSS (FBgn0263111) protein_coding-promoter-TSS (FBgn0263111) -912 FBgn0263111 FBgn0263111 FBtr0332391 cac protein_coding CTCF-S2-jox2017_R1_peak_586 chr3L 6702239 6702392 + 50 NA TTS (FBgn0035711) protein_coding-TTS (FBgn0035711) 1630 FBgn0035711 FBgn0035711 FBtr0333072 CG8519 protein_coding CTCF-S2-jox2017_R1_peak_662 chr3L 11505595 11505845 + 50 NA exon (FBgn0003373, exon 2 of 2) protein_coding-exon (FBgn0003373, exon 2 of 2) 399 FBgn0003373 FBgn0003373 FBtr0076096 Sgs3 protein_coding CTCF-S2-jox2017_R1_peak_186 chr2L 17092853 17092998 + 50 NA Intergenic Intergenic 5284 FBgn0032626 FBgn0032626 FBtr0080953 CG12620 protein_coding CTCF-S2-jox2017_R1_peak_488 chr2RHet 472108 472301 + 50 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_77 chr2L 6966931 6967191 + 50 NA exon (FBgn0026170, exon 2 of 2) protein_coding-exon (FBgn0026170, exon 2 of 2) 583 FBgn0026170 FBgn0026170 FBtr0079356 smt3 protein_coding CTCF-S2-jox2017_R1_peak_1522 chrX 17376069 17376234 + 50 NA intron (FBgn0263706, intron 4 of 8) protein_coding-intron (FBgn0263706, intron 4 of 8) 7197 FBgn0263706 FBgn0263706 FBtr0330597 CG43658 protein_coding CTCF-S2-jox2017_R1_peak_893 chr3R 5610292 5610437 + 50 NA promoter-TSS (FBgn0037754) protein_coding-promoter-TSS (FBgn0037754) -44 FBgn0037754 FBgn0037754 FBtr0082139 CG8500 protein_coding CTCF-S2-jox2017_R1_peak_884 chr3R 4804953 4805261 + 50 NA Intergenic Intergenic -1477 FBgn0037646 FBgn0037646 FBtr0081958 CAHbeta protein_coding CTCF-S2-jox2017_R1_peak_68 chr2L 6455100 6455327 + 50 NA promoter-TSS (FBgn0031815) protein_coding-promoter-TSS (FBgn0031815) 721 FBgn0031814 FBgn0031814 FBtr0329951 retm protein_coding CTCF-S2-jox2017_R1_peak_812 chr3L 24112517 24112669 + 50 NA intron (FBgn0011288, intron 2 of 6) protein_coding-intron (FBgn0011288, intron 2 of 7) 45264 FBgn0011288 FBgn0011288 FBtr0304626 Snap25 protein_coding CTCF-S2-jox2017_R1_peak_1260 chrUextra 22440756 22440906 + 49 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_257 chr2R 1504248 1504415 + 49 NA Intergenic Intergenic 8202 FBgn0039970 FBgn0039970 FBtr0307172 CG17508 protein_coding CTCF-S2-jox2017_R1_peak_145 chr2L 12374720 12375045 + 49 NA intron (FBgn0262475, intron 2 of 6) protein_coding-intron (FBgn0262475, intron 5 of 9) 18441 FBgn0032424 FBgn0032424 FBtr0080354 CG17010 protein_coding CTCF-S2-jox2017_R1_peak_537 chr3L 2959039 2959184 + 49 NA TTS (FBgn0054025) protein_coding-TTS (FBgn0054025) 1938 FBgn0054025 FBgn0054025 FBtr0290083 CG34025 protein_coding CTCF-S2-jox2017_R1_peak_1118 chr3R 26419533 26419693 + 49 NA intron (FBgn0039790, intron 4 of 6) protein_coding-intron (FBgn0039790, intron 5 of 7) -3113 FBgn0051019 FBgn0051019 FBtr0085665 CG31019 protein_coding CTCF-S2-jox2017_R1_peak_473 chr2R 19829888 19830033 + 49 NA promoter-TSS (FBgn0001123) protein_coding-promoter-TSS (FBgn0001123) -117 FBgn0001123 FBgn0001123 FBtr0301411 G-salpha60A protein_coding CTCF-S2-jox2017_R1_peak_1484 chrX 13480747 13481238 + 49 NA intron (FBgn0086674, intron 7 of 7) protein_coding-intron (FBgn0086674, intron 7 of 7) 15544 FBgn0004169 FBgn0004169 FBtr0073853 up protein_coding CTCF-S2-jox2017_R1_peak_852 chr3R 1824716 1824861 + 49 NA Intergenic Intergenic 9513 FBgn0003261 FBgn0003261 FBtr0078654 Rm62 protein_coding CTCF-S2-jox2017_R1_peak_874 chr3R 3605601 3605795 + 49 NA Intergenic Intergenic 3425 FBgn0042104 FBgn0042104 FBtr0273255 CG18747 protein_coding CTCF-S2-jox2017_R1_peak_1497 chrX 14865229 14865375 + 49 NA exon (FBgn0000535, exon 3 of 17) protein_coding-exon (FBgn0000535, exon 3 of 17) 15792 FBgn0000535 FBgn0000535 FBtr0310015 eag protein_coding CTCF-S2-jox2017_R1_peak_232 chr2L 21108816 21108961 + 49 NA intron (FBgn0040297, intron 1 of 20) protein_coding-intron (FBgn0040297, intron 1 of 19) 929 FBgn0040297 FBgn0040297 FBtr0299911 Nhe2 protein_coding CTCF-S2-jox2017_R1_peak_542 chr3L 3567104 3567249 + 49 NA intron (FBgn0005640, intron 2 of 10) protein_coding-intron (FBgn0005640, intron 2 of 10) -26647 FBgn0053504 FBgn0053504 FBtr0100848 snRNA:U7 snRNA CTCF-S2-jox2017_R1_peak_1074 chr3R 22143768 22143913 + 49 NA promoter-TSS (FBgn0053970) protein_coding-promoter-TSS (FBgn0053970) 7157 FBgn0261833 FBgn0261833 FBtr0303394 CG42765 protein_coding CTCF-S2-jox2017_R1_peak_1363 chrX 1899410 1899619 + 49 NA TTS (FBgn0264562) protein_coding-TTS (FBgn0264562) 3883 FBgn0023545 FBgn0023545 FBtr0070347 CG4406 protein_coding CTCF-S2-jox2017_R1_peak_157 chr2L 13793408 13793565 + 49 NA promoter-TSS (FBgn0028538) protein_coding-promoter-TSS (FBgn0028538) -64 FBgn0028538 FBgn0028538 FBtr0080538 sec71 protein_coding CTCF-S2-jox2017_R1_peak_1258 chrUextra 22179036 22179183 + 49 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_158 chr2L 14024148 14024314 + 49 NA Intergenic Intergenic -2779 FBgn0028519 FBgn0028519 FBtr0080591 CG4500 protein_coding CTCF-S2-jox2017_R1_peak_1177 chrU 1235441 1235788 + 49 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_881 chr3R 4499559 4499705 + 48 NA promoter-TSS (FBgn0037608) protein_coding-promoter-TSS (FBgn0037608) -207 FBgn0037608 FBgn0037608 FBtr0081901 mRpL19 protein_coding CTCF-S2-jox2017_R1_peak_1477 chrX 13098828 13098973 + 48 NA intron (FBgn0005410, intron 2 of 13) protein_coding-intron (FBgn0005410, intron 2 of 2) 6799 FBgn0005410 FBgn0005410 FBtr0073735 sno protein_coding CTCF-S2-jox2017_R1_peak_1343 chrUextra 28953276 28953422 + 48 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_734 chr3L 17285384 17285529 + 48 NA Intergenic Intergenic -22668 FBgn0262376 FBgn0262376 FBtr0304211 mir-219 pre_miRNA CTCF-S2-jox2017_R1_peak_1130 chr3RHet 838533 838713 + 48 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_931 chr3R 9794713 9794894 + 48 NA exon (FBgn0264493, exon 8 of 8) protein_coding-exon (FBgn0264493, exon 8 of 8) -2652 FBgn0263414 FBgn0263414 FBtr0309198 CR43460 ncRNA CTCF-S2-jox2017_R1_peak_507 chr3L 441686 441831 + 48 NA promoter-TSS (FBgn0001316) protein_coding-promoter-TSS (FBgn0001316) 6374 FBgn0001316 FBgn0001316 FBtr0112808 klar protein_coding CTCF-S2-jox2017_R1_peak_1075 chr3R 22182416 22182561 + 48 NA intron (FBgn0053970, intron 3 of 4) protein_coding-intron (FBgn0053970, intron 7 of 8) 1278 FBgn0053970 FBgn0053970 FBtr0100013 CG33970 protein_coding CTCF-S2-jox2017_R1_peak_1184 chrU 2325136 2325281 + 48 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1082 chr3R 23054210 23054355 + 48 NA promoter-TSS (FBgn0261995) protein_coding-promoter-TSS (FBgn0261995) -38 FBgn0261995 FBgn0261995 FBtr0303825 CG42813 protein_coding CTCF-S2-jox2017_R1_peak_185 chr2L 16876659 16876804 + 48 NA intron (FBgn0051781, intron 3 of 3) ncRNA-intron (FBgn0051781, intron 1 of 1) 2559 FBgn0052832 FBgn0052832 FBtr0080960 CG32832 protein_coding CTCF-S2-jox2017_R1_peak_690 chr3L 14143495 14143640 + 48 NA Intergenic Intergenic -19170 FBgn0042630 FBgn0042630 FBtr0330116 Sox21b protein_coding CTCF-S2-jox2017_R1_peak_1398 chrX 4914359 4914508 + 48 NA Intergenic Intergenic 22861 FBgn0029740 FBgn0029740 FBtr0300018 CG12680 protein_coding CTCF-S2-jox2017_R1_peak_1352 chrX 734279 734532 + 48 NA exon (FBgn0264449, exon 1 of 10) protein_coding-exon (FBgn0264449, exon 1 of 10) -4451 FBgn0029535 FBgn0029535 FBtr0070142 CG14635 protein_coding CTCF-S2-jox2017_R1_peak_234 chr2L 21263543 21263689 + 48 NA promoter-TSS (FBgn0263536) pre_miRNA-promoter-TSS (FBgn0263536) -376 FBgn0263536 FBgn0263536 FBtr0309633 mir-4974 pre_miRNA CTCF-S2-jox2017_R1_peak_1487 chrX 14316268 14316529 + 48 NA intron (FBgn0052600, intron 5 of 9) protein_coding-intron (FBgn0052600, intron 5 of 9) 42014 FBgn0030566 FBgn0030566 FBtr0073915 betaNACtes4 protein_coding CTCF-S2-jox2017_R1_peak_543 chr3L 3596491 3596636 + 48 NA intron (FBgn0005640, intron 6 of 10) protein_coding-intron (FBgn0005640, intron 6 of 10) 2740 FBgn0053504 FBgn0053504 FBtr0100848 snRNA:U7 snRNA CTCF-S2-jox2017_R1_peak_563 chr3L 4800906 4801051 + 48 NA Intergenic Intergenic 4296 FBgn0035575 FBgn0035575 FBtr0073362 CG7509 protein_coding CTCF-S2-jox2017_R1_peak_28 chr2L 2943283 2943443 + 48 NA intron (FBgn0041111, intron 3 of 12) protein_coding-intron (FBgn0041111, intron 3 of 12) -13548 FBgn0010263 FBgn0010263 FBtr0077640 Rbp9 protein_coding CTCF-S2-jox2017_R1_peak_373 chr2R 10758779 10758974 + 48 NA promoter-TSS (FBgn0013773) protein_coding-promoter-TSS (FBgn0013773) -301 FBgn0022063 FBgn0022063 FBtr0302109 Pcf11 protein_coding CTCF-S2-jox2017_R1_peak_1374 chrX 2963349 2963533 + 48 NA intron (FBgn0028369, intron 5 of 10) protein_coding-intron (FBgn0028369, intron 7 of 12) -1926 FBgn0029649 FBgn0029649 FBtr0332494 CG4116 protein_coding CTCF-S2-jox2017_R1_peak_894 chr3R 5743291 5743436 + 48 NA intron (FBgn0263097, intron 1 of 6) protein_coding-intron (FBgn0263097, intron 1 of 6) 42960 FBgn0263097 FBgn0263097 FBtr0114583 Glut4EF protein_coding CTCF-S2-jox2017_R1_peak_484 chr2RHet 100118 100263 + 48 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_32 chr2L 3335174 3335319 + 48 NA TTS (FBgn0031523) protein_coding-TTS (FBgn0031523) 2432 FBgn0031523 FBgn0031523 FBtr0304701 CG15408 protein_coding CTCF-S2-jox2017_R1_peak_1414 chrX 5641084 5641229 + 48 NA promoter-TSS (FBgn0029798) protein_coding-promoter-TSS (FBgn0029798) 131 FBgn0261383 FBgn0261383 FBtr0070842 IntS6 protein_coding CTCF-S2-jox2017_R1_peak_1277 chrUextra 25862225 25862599 + 48 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1548 chrX 18820944 18821091 + 48 NA Intergenic Intergenic -3351 FBgn0264090 FBgn0264090 FBtr0331157 CG43759 protein_coding CTCF-S2-jox2017_R1_peak_695 chr3L 14358671 14358847 + 48 NA intron (FBgn0001085, intron 4 of 4) protein_coding-intron (FBgn0001085, intron 4 of 4) 4048 FBgn0036421 FBgn0036421 FBtr0113170 CG13481 protein_coding CTCF-S2-jox2017_R1_peak_890 chr3R 5276468 5276789 + 47 NA Intergenic Intergenic 5640 FBgn0037696 FBgn0037696 FBtr0082044 CG9362 protein_coding CTCF-S2-jox2017_R1_peak_1083 chr3R 23116490 23116689 + 47 NA TTS (FBgn0040609) protein_coding-TTS (FBgn0040609) 1322 FBgn0040609 FBgn0040609 FBtr0085172 CG3348 protein_coding CTCF-S2-jox2017_R1_peak_1345 chrUextra 28982888 28983129 + 47 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_248 chr2R 299572 299727 + 47 NA intron (FBgn0260798, intron 7 of 15) protein_coding-intron (FBgn0260798, intron 6 of 14) 58909 FBgn0260798 FBgn0260798 FBtr0302242 Gprk1 protein_coding CTCF-S2-jox2017_R1_peak_978 chr3R 13492317 13492493 + 47 NA intron (FBgn0038532, intron 4 of 7) protein_coding-intron (FBgn0038532, intron 4 of 6) -1504 FBgn0051576 FBgn0051576 FBtr0083477 tRNA:CR31576 tRNA CTCF-S2-jox2017_R1_peak_640 chr3L 10274918 10275241 + 47 NA Intergenic Intergenic 8775 FBgn0036080 FBgn0036080 FBtr0076297 Or67d protein_coding CTCF-S2-jox2017_R1_peak_1411 chrX 5501839 5502107 + 47 NA intron (FBgn0263511, intron 2 of 2) protein_coding-intron (FBgn0263511, intron 2 of 2) 6455 FBgn0085464 FBgn0085464 FBtr0112736 CG34435 protein_coding CTCF-S2-jox2017_R1_peak_1128 chr3RHet 189437 189679 + 47 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1248 chrUextra 18018547 18018842 + 47 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_49 chr2L 4546413 4546601 + 47 NA exon (FBgn0053196, exon 13 of 47) protein_coding-exon (FBgn0053196, exon 13 of 47) 31694 FBgn0031613 FBgn0031613 FBtr0077444 HP6 protein_coding CTCF-S2-jox2017_R1_peak_859 chr3R 2255575 2255770 + 47 NA intron (FBgn0264495, intron 2 of 9) protein_coding-intron (FBgn0264495, intron 2 of 8) 23093 FBgn0264495 FBgn0264495 FBtr0303788 gpp protein_coding CTCF-S2-jox2017_R1_peak_520 chr3L 1114092 1114237 + 47 NA Intergenic Intergenic -13075 FBgn0004870 FBgn0004870 FBtr0072643 bab1 protein_coding CTCF-S2-jox2017_R1_peak_1266 chrUextra 23704250 23704730 + 47 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1539 chrX 18429605 18429750 + 46 NA intron (FBgn0000242, intron 1 of 3) protein_coding-intron (FBgn0000242, intron 1 of 3) 6955 FBgn0030938 FBgn0030938 FBtr0074596 CG15047 protein_coding CTCF-S2-jox2017_R1_peak_809 chr3L 23950544 23950721 + 46 NA intron (FBgn0058470, intron 2 of 12) protein_coding-intron (FBgn0058470, intron 2 of 12) 28878 FBgn0058470 FBgn0058470 FBtr0111152 CG40470 protein_coding CTCF-S2-jox2017_R1_peak_523 chr3L 1488635 1488790 + 46 NA promoter-TSS (FBgn0086670) snoRNA-promoter-TSS (FBgn0086670) -27 FBgn0263839 FBgn0263839 FBtr0321280 CR43701 ncRNA CTCF-S2-jox2017_R1_peak_246 chr2R 181239 181408 + 46 NA Intergenic Intergenic -50879 FBgn0262117 FBgn0262117 FBtr0111269 IntS3 protein_coding CTCF-S2-jox2017_R1_peak_154 chr2L 13465799 13465944 + 46 NA intron (FBgn0263354, intron 1 of 6) protein_coding-intron (FBgn0263354, intron 3 of 8) 4097 FBgn0263354 FBgn0263354 FBtr0303440 CG42784 protein_coding CTCF-S2-jox2017_R1_peak_1526 chrX 17589822 17589967 + 46 NA intron (FBgn0263258, intron 1 of 8) protein_coding-intron (FBgn0263258, intron 1 of 8) 7100 FBgn0030863 FBgn0030863 FBtr0074476 CG8188 protein_coding CTCF-S2-jox2017_R1_peak_398 chr2R 12604481 12604646 + 46 NA intron (FBgn0050463, intron 1 of 11) protein_coding-intron (FBgn0050463, intron 1 of 11) 20792 FBgn0262564 FBgn0262564 FBtr0304892 CG43104 protein_coding CTCF-S2-jox2017_R1_peak_986 chr3R 13734930 13735170 + 46 NA exon (FBgn0053547, exon 3 of 27) protein_coding-exon (FBgn0053547, exon 3 of 27) -2048 FBgn0263399 FBgn0263399 FBtr0309175 CG43445 protein_coding CTCF-S2-jox2017_R1_peak_1113 chr3R 25858113 25858262 + 46 NA intron (FBgn0026597, intron 3 of 8) protein_coding-intron (FBgn0026597, intron 6 of 12) 4381 FBgn0039740 FBgn0039740 FBtr0085600 CG7928 protein_coding CTCF-S2-jox2017_R1_peak_892 chr3R 5603721 5603866 + 46 NA promoter-TSS (FBgn0261599) protein_coding-promoter-TSS (FBgn0261599) 26 FBgn0261599 FBgn0261599 FBtr0082136 RpS29 protein_coding CTCF-S2-jox2017_R1_peak_509 chr3L 520954 521101 + 46 NA intron (FBgn0001316, intron 1 of 16) protein_coding-intron (FBgn0001316, intron 1 of 18) -7312 FBgn0085298 FBgn0085298 FBtr0112464 CG34269 protein_coding CTCF-S2-jox2017_R1_peak_1333 chrUextra 28858961 28859108 + 45 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_622 chr3L 9170338 9170633 + 45 NA exon (FBgn0004244, exon 1 of 9) protein_coding-exon (FBgn0004244, exon 1 of 9) 4764 FBgn0004244 FBgn0004244 FBtr0309054 Rdl protein_coding CTCF-S2-jox2017_R1_peak_356 chr2R 9526611 9526770 + 45 NA intron (FBgn0000633, intron 1 of 12) protein_coding-intron (FBgn0000633, intron 1 of 12) 16097 FBgn0000633 FBgn0000633 FBtr0087625 fas protein_coding CTCF-S2-jox2017_R1_peak_1037 chr3R 18726971 18727116 + 45 NA intron (FBgn0017590, intron 1 of 10) protein_coding-intron (FBgn0017590, intron 1 of 10) 2019 FBgn0017590 FBgn0017590 FBtr0084337 klg protein_coding CTCF-S2-jox2017_R1_peak_490 chr2RHet 538888 539119 + 45 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1418 chrX 6014613 6014791 + 45 NA intron (FBgn0264386, intron 15 of 24) protein_coding-intron (FBgn0264386, intron 16 of 25) 26800 FBgn0029843 FBgn0029843 FBtr0070873 Nep1 protein_coding CTCF-S2-jox2017_R1_peak_1 chr2L 34157 34362 + 45 NA exon (FBgn0051973, exon 7 of 13) protein_coding-exon (FBgn0051973, exon 7 of 13) -9104 FBgn0031209 FBgn0031209 FBtr0113008 Ir21a protein_coding CTCF-S2-jox2017_R1_peak_1064 chr3R 21224559 21225103 + 45 NA exon (FBgn0051439, exon 2 of 2) protein_coding-exon (FBgn0051439, exon 2 of 2) 1536 FBgn0051439 FBgn0051439 FBtr0084845 Muc96D protein_coding CTCF-S2-jox2017_R1_peak_1210 chrUextra 5513300 5513445 + 44 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1144 chr3RHet 2489145 2489405 + 44 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_139 chr2L 12085898 12086094 + 44 NA promoter-TSS (FBgn0003145) protein_coding-promoter-TSS (FBgn0003145) -618 FBgn0003145 FBgn0003145 FBtr0080299 prd protein_coding CTCF-S2-jox2017_R1_peak_1494 chrX 14812913 14813058 + 44 NA promoter-TSS (FBgn0030597) protein_coding-promoter-TSS (FBgn0030597) -208 FBgn0030597 FBgn0030597 FBtr0073975 Eo protein_coding CTCF-S2-jox2017_R1_peak_1358 chrX 1280996 1281141 + 44 NA intron (FBgn0052813, intron 3 of 4) protein_coding-intron (FBgn0052813, intron 2 of 3) -1535 FBgn0052813 FBgn0052813 FBtr0330320 CG32813 protein_coding CTCF-S2-jox2017_R1_peak_383 chr2R 11585669 11585814 + 44 NA TTS (FBgn0053462) protein_coding-TTS (FBgn0053462) 989 FBgn0261538 FBgn0261538 FBtr0309868 CG42662 protein_coding CTCF-S2-jox2017_R1_peak_122 chr2L 10459049 10459194 + 44 NA intron (FBgn0027611, intron 3 of 9) protein_coding-intron (FBgn0027611, intron 3 of 9) 1465 FBgn0027611 FBgn0027611 FBtr0080031 CG6206 protein_coding CTCF-S2-jox2017_R1_peak_44 chr2L 4301496 4301678 + 44 NA intron (FBgn0010473, intron 4 of 12) protein_coding-intron (FBgn0010473, intron 4 of 6) 18439 FBgn0010473 FBgn0010473 FBtr0301864 tutl protein_coding CTCF-S2-jox2017_R1_peak_1262 chrUextra 22465900 22466147 + 44 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1491 chrX 14773060 14773209 + 44 NA intron (FBgn0030591, intron 1 of 3) protein_coding-intron (FBgn0264078, intron 2 of 7) 3484 FBgn0030591 FBgn0030591 FBtr0073982 CG9517 protein_coding CTCF-S2-jox2017_R1_peak_407 chr2R 13579923 13580143 + 44 NA intron (FBgn0034262, intron 2 of 4) protein_coding-intron (FBgn0034262, intron 2 of 4) 2823 FBgn0034262 FBgn0034262 FBtr0086889 swi2 protein_coding CTCF-S2-jox2017_R1_peak_1481 chrX 13392781 13393103 + 44 NA intron (FBgn0052635, intron 4 of 10) protein_coding-intron (FBgn0052635, intron 4 of 10) -21594 FBgn0030491 FBgn0030491 FBtr0273441 CG15753 protein_coding CTCF-S2-jox2017_R1_peak_1139 chr3RHet 2104661 2104892 + 44 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_923 chr3R 8583095 8583240 + 44 NA intron (FBgn0038084, intron 1 of 5) protein_coding-intron (FBgn0038084, intron 1 of 5) -13765 FBgn0038083 FBgn0038083 FBtr0302379 CG5999 protein_coding CTCF-S2-jox2017_R1_peak_1464 chrX 11759242 11759387 + 44 NA exon (FBgn0030344, exon 4 of 4) protein_coding-exon (FBgn0030344, exon 4 of 4) 3603 FBgn0030344 FBgn0030344 FBtr0073601 CG2025 protein_coding CTCF-S2-jox2017_R1_peak_1567 chrX 21229229 21229374 + 44 NA promoter-TSS (FBgn0011710) protein_coding-promoter-TSS (FBgn0011710) -2 FBgn0011710 FBgn0011710 FBtr0077198 Sep1 protein_coding CTCF-S2-jox2017_R1_peak_1350 chrX 659204 659349 + 44 NA promoter-TSS (FBgn0015288) protein_coding-promoter-TSS (FBgn0015288) -104 FBgn0015288 FBgn0015288 FBtr0070148 RpL22 protein_coding CTCF-S2-jox2017_R1_peak_810 chr3L 24021408 24021553 + 44 NA promoter-TSS (FBgn0058045) protein_coding-promoter-TSS (FBgn0058045) -135 FBgn0058045 FBgn0058045 FBtr0331586 CG40045 protein_coding CTCF-S2-jox2017_R1_peak_1025 chr3R 17160645 17160855 + 44 NA intron (FBgn0038881, intron 3 of 14) protein_coding-intron (FBgn0038881, intron 3 of 14) 14556 FBgn0038881 FBgn0038881 FBtr0084095 CG16791 protein_coding CTCF-S2-jox2017_R1_peak_1543 chrX 18515991 18516160 + 44 NA TTS (FBgn0262981) protein_coding-TTS (FBgn0262981) 544 FBgn0262981 FBgn0262981 FBtr0306817 CG43289 protein_coding CTCF-S2-jox2017_R1_peak_420 chr2R 15410642 15410787 + 43 NA TTS (FBgn0003435) protein_coding-TTS (FBgn0003435) -9638 FBgn0034458 FBgn0034458 FBtr0086497 Ir56d protein_coding CTCF-S2-jox2017_R1_peak_1342 chrUextra 28929791 28930045 + 43 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_816 chr3L 24487271 24487600 + 43 NA Intergenic Intergenic -39754 FBgn0040045 FBgn0040045 FBtr0307117 CR12460 pseudogene CTCF-S2-jox2017_R1_peak_416 chr2R 14693688 14693850 + 43 NA Intergenic Intergenic -3865 FBgn0010651 FBgn0010651 FBtr0086635 l(2)08717 protein_coding CTCF-S2-jox2017_R1_peak_1268 chrUextra 23971048 23971304 + 43 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1336 chrUextra 28887064 28887302 + 43 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1201 chrUextra 298520 298666 + 43 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_271 chr2R 3290720 3290877 + 43 NA promoter-TSS (FBgn0262948) protein_coding-promoter-TSS (FBgn0262948) 536 FBgn0262583 FBgn0262583 FBtr0305124 CG43123 protein_coding CTCF-S2-jox2017_R1_peak_311 chr2R 6349280 6349443 + 42 NA exon (FBgn0001122, exon 8 of 8) protein_coding-exon (FBgn0001122, exon 8 of 8) 2693 FBgn0001122 FBgn0001122 FBtr0333064 G-oalpha47A protein_coding CTCF-S2-jox2017_R1_peak_1227 chrUextra 10087126 10087272 + 42 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1541 chrX 18501527 18501758 + 42 NA exon (FBgn0030940, exon 6 of 6) protein_coding-exon (FBgn0030940, exon 6 of 6) 9980 FBgn0030940 FBgn0030940 FBtr0074618 CG15040 protein_coding CTCF-S2-jox2017_R1_peak_253 chr2R 863413 863558 + 42 NA intron (FBgn0040849, intron 2 of 4) protein_coding-intron (FBgn0040849, intron 2 of 4) 26313 FBgn0040849 FBgn0040849 FBtr0299925 Ir41a protein_coding CTCF-S2-jox2017_R1_peak_701 chr3L 14910771 14910919 + 42 NA intron (FBgn0259099, intron 1 of 10) protein_coding-intron (FBgn0259099, intron 1 of 10) 13940 FBgn0259099 FBgn0259099 FBtr0330139 DCX-EMAP protein_coding CTCF-S2-jox2017_R1_peak_592 chr3L 6899475 6899735 + 42 NA Intergenic Intergenic 7459 FBgn0041194 FBgn0041194 FBtr0076946 Prat2 protein_coding CTCF-S2-jox2017_R1_peak_1072 chr3R 21859289 21859453 + 42 NA exon (FBgn0002632, exon 1 of 1) protein_coding-exon (FBgn0002632, exon 1 of 1) 738 FBgn0002632 FBgn0002632 FBtr0084959 m6 protein_coding CTCF-S2-jox2017_R1_peak_1179 chrU 1373077 1373361 + 42 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1323 chrUextra 28743291 28743575 + 42 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1396 chrX 4580056 4580208 + 42 NA exon (FBgn0022768, exon 1 of 3) protein_coding-exon (FBgn0022768, exon 1 of 3) 772 FBgn0022768 FBgn0022768 FBtr0070685 Pp2C1 protein_coding CTCF-S2-jox2017_R1_peak_964 chr3R 12683447 12683614 + 42 NA intron (FBgn0263610, intron 5 of 7) ncRNA-intron (FBgn0263610, intron 4 of 6) 1493 FBgn0262462 FBgn0262462 FBtr0304522 mir-iab-4 pre_miRNA CTCF-S2-jox2017_R1_peak_887 chr3R 4894385 4894533 + 42 NA exon (FBgn0003165, exon 11 of 11) protein_coding-exon (FBgn0003165, exon 11 of 11) 3554 FBgn0037661 FBgn0037661 FBtr0081971 Ada protein_coding CTCF-S2-jox2017_R1_peak_250 chr2R 464145 464361 + 42 NA Intergenic Intergenic -18545 FBgn0260799 FBgn0260799 FBtr0111114 p120ctn protein_coding CTCF-S2-jox2017_R1_peak_1168 chrU 158783 159014 + 42 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1328 chrUextra 28821449 28821683 + 42 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1573 chrXHet 68153 68349 + 42 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_903 chr3R 6336474 6336621 + 41 NA exon (FBgn0001235, exon 12 of 12) protein_coding-exon (FBgn0001235, exon 12 of 12) 2231 FBgn0263547 FBgn0263547 FBtr0309664 mir-4944 pre_miRNA CTCF-S2-jox2017_R1_peak_111 chr2L 9722948 9723101 + 41 NA intron (FBgn0028704, intron 4 of 8) protein_coding-intron (FBgn0028704, intron 4 of 7) -6916 FBgn0032139 FBgn0032139 FBtr0079863 CG13116 protein_coding CTCF-S2-jox2017_R1_peak_1462 chrX 11580318 11580571 + 41 NA intron (FBgn0014133, intron 3 of 6) protein_coding-intron (FBgn0014133, intron 3 of 5) 7416 FBgn0014133 FBgn0014133 FBtr0073526 bif protein_coding CTCF-S2-jox2017_R1_peak_993 chr3R 14746110 14746268 + 41 NA exon (FBgn0261113, exon 3 of 5) protein_coding-exon (FBgn0261113, exon 3 of 5) 1978 FBgn0261113 FBgn0261113 FBtr0083703 Xrp1 protein_coding CTCF-S2-jox2017_R1_peak_1448 chrX 9927767 9927978 + 41 NA exon (FBgn0263132, exon 9 of 14) protein_coding-exon (FBgn0263132, exon 9 of 14) 16178 FBgn0263132 FBgn0263132 FBtr0307374 Cht6 protein_coding CTCF-S2-jox2017_R1_peak_502 chr2RHet 3069729 3069895 + 41 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_513 chr3L 760775 760920 + 41 NA Intergenic Intergenic -5358 FBgn0035160 FBgn0035160 FBtr0072601 CG13897 protein_coding CTCF-S2-jox2017_R1_peak_731 chr3L 17146589 17146855 + 41 NA intron (FBgn0260943, intron 6 of 14) protein_coding-intron (FBgn0260943, intron 6 of 14) -13241 FBgn0263381 FBgn0263381 FBtr0309067 CR43433 ncRNA CTCF-S2-jox2017_R1_peak_958 chr3R 12455134 12455279 + 41 NA intron (FBgn0262742, intron 2 of 13) protein_coding-intron (FBgn0262742, intron 2 of 12) 4246 FBgn0262742 FBgn0262742 FBtr0083333 Fas1 protein_coding CTCF-S2-jox2017_R1_peak_1281 chrUextra 26525698 26525843 + 41 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_495 chr2RHet 2843453 2843658 + 40 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1188 chrU 3235365 3235643 + 40 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1272 chrUextra 24910063 24910305 + 40 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_316 chr2R 6439509 6439654 + 40 NA Intergenic Intergenic -5812 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding CTCF-S2-jox2017_R1_peak_1322 chrUextra 28740184 28740329 + 40 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_347 chr2R 8453997 8454202 + 40 NA exon (FBgn0033753, exon 1 of 7) protein_coding-exon (FBgn0033753, exon 1 of 7) 407 FBgn0033753 FBgn0033753 FBtr0087824 Cyp301a1 protein_coding CTCF-S2-jox2017_R1_peak_1482 chrX 13400394 13400539 + 40 NA intron (FBgn0052635, intron 10 of 10) protein_coding-intron (FBgn0052635, intron 10 of 10) -14070 FBgn0030491 FBgn0030491 FBtr0273441 CG15753 protein_coding CTCF-S2-jox2017_R1_peak_38 chr2L 3683168 3683313 + 40 NA intron (FBgn0085369, intron 4 of 7) protein_coding-intron (FBgn0085369, intron 4 of 7) 9348 FBgn0031558 FBgn0031558 FBtr0077550 CG16704 protein_coding CTCF-S2-jox2017_R1_peak_478 chr2R 20653847 20654010 + 40 NA TTS (FBgn0027590) protein_coding-TTS (FBgn0027590) 1769 FBgn0027590 FBgn0027590 FBtr0305310 CG16936 protein_coding CTCF-S2-jox2017_R1_peak_290 chr2R 4883851 4884010 + 40 NA exon (FBgn0085379, exon 4 of 9) protein_coding-exon (FBgn0085379, exon 4 of 9) 10162 FBgn0085379 FBgn0085379 FBtr0112560 CG34350 protein_coding CTCF-S2-jox2017_R1_peak_1300 chrUextra 28499002 28499180 + 40 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_754 chr3L 18782817 18782963 + 40 NA intron (FBgn0001078, intron 2 of 9) protein_coding-intron (FBgn0001078, intron 2 of 9) -24046 FBgn0001078 FBgn0001078 FBtr0075087 ftz-f1 protein_coding CTCF-S2-jox2017_R1_peak_1535 chrX 18095663 18095819 + 39 NA exon (FBgn0083228, exon 8 of 8) protein_coding-exon (FBgn0083228, exon 8 of 8) 3436 FBgn0030899 FBgn0030899 FBtr0074590 Her protein_coding CTCF-S2-jox2017_R1_peak_655 chr3L 11112951 11113109 + 39 NA promoter-TSS (FBgn0036135) protein_coding-promoter-TSS (FBgn0036135) 845 FBgn0036134 FBgn0036134 FBtr0300785 fd68A protein_coding CTCF-S2-jox2017_R1_peak_991 chr3R 14443107 14443280 + 39 NA promoter-TSS (FBgn0038631) protein_coding-promoter-TSS (FBgn0038631) 40 FBgn0038631 FBgn0038631 FBtr0083694 CG7695 protein_coding CTCF-S2-jox2017_R1_peak_267 chr2R 2936461 2936648 + 39 NA promoter-TSS (FBgn0016032) protein_coding-promoter-TSS (FBgn0016032) -747 FBgn0016032 FBgn0016032 FBtr0089033 lbm protein_coding CTCF-S2-jox2017_R1_peak_1048 chr3R 19721242 19721391 + 39 NA intron (FBgn0016754, intron 7 of 7) protein_coding-intron (FBgn0016754, intron 8 of 8) -2211 FBgn0039124 FBgn0039124 FBtr0084525 CG13597 protein_coding CTCF-S2-jox2017_R1_peak_914 chr3R 7227382 7227527 + 39 NA exon (FBgn0004595, exon 8 of 8) protein_coding-exon (FBgn0004595, exon 8 of 8) -6165 FBgn0037892 FBgn0037892 FBtr0082384 mRpL40 protein_coding CTCF-S2-jox2017_R1_peak_258 chr2R 1564389 1564534 + 39 NA exon (FBgn0033033, exon 7 of 7) protein_coding-exon (FBgn0033033, exon 7 of 7) 5184 FBgn0033032 FBgn0033032 FBtr0086037 kune protein_coding CTCF-S2-jox2017_R1_peak_1551 chrX 19181992 19182137 + 39 NA intron (FBgn0031011, intron 1 of 3) protein_coding-intron (FBgn0031011, intron 1 of 3) -3230 FBgn0031011 FBgn0031011 FBtr0301226 CG8034 protein_coding CTCF-S2-jox2017_R1_peak_1508 chrX 15635599 15635765 + 39 NA exon (FBgn0030680, exon 2 of 2) protein_coding-exon (FBgn0030680, exon 2 of 2) 2407 FBgn0030679 FBgn0030679 FBtr0074085 CG8206 protein_coding CTCF-S2-jox2017_R1_peak_781 chr3L 20499363 20499517 + 39 NA TTS (FBgn0037004) protein_coding-TTS (FBgn0037004) 308 FBgn0037005 FBgn0037005 FBtr0078208 CG5078 protein_coding CTCF-S2-jox2017_R1_peak_438 chr2R 16807421 16807594 + 39 NA intron (FBgn0020617, intron 2 of 5) protein_coding-intron (FBgn0020617, intron 2 of 5) 3222 FBgn0020617 FBgn0020617 FBtr0071518 Rx protein_coding CTCF-S2-jox2017_R1_peak_1235 chrUextra 13152784 13152929 + 39 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1475 chrX 12863024 12863220 + 39 NA exon (FBgn0052644, exon 2 of 3) protein_coding-exon (FBgn0052644, exon 2 of 3) 1180 FBgn0052644 FBgn0052644 FBtr0305599 Mur11Da protein_coding CTCF-S2-jox2017_R1_peak_254 chr2R 1291315 1291464 + 39 NA Intergenic Intergenic -12468 FBgn0259247 FBgn0259247 FBtr0301063 laccase2 protein_coding CTCF-S2-jox2017_R1_peak_611 chr3L 8629713 8629861 + 39 NA TTS (FBgn0035917) protein_coding-TTS (FBgn0035917) -2618 FBgn0035918 FBgn0035918 FBtr0076647 Cdc6 protein_coding CTCF-S2-jox2017_R1_peak_1007 chr3R 15895511 15895656 + 39 NA Intergenic Intergenic 12111 FBgn0038772 FBgn0038772 FBtr0083835 CG4973 protein_coding CTCF-S2-jox2017_R1_peak_1391 chrX 4138529 4138785 + 39 NA exon (FBgn0052774, exon 2 of 2) protein_coding-exon (FBgn0052774, exon 2 of 2) 1167 FBgn0052774 FBgn0052774 FBtr0307050 Muc4B protein_coding CTCF-S2-jox2017_R1_peak_785 chr3L 20759460 20759605 + 39 NA Intergenic Intergenic 3050 FBgn0037017 FBgn0037017 FBtr0078280 CG4074 protein_coding CTCF-S2-jox2017_R1_peak_1010 chr3R 16578997 16579165 + 38 NA intron (FBgn0259222, intron 9 of 10) protein_coding-intron (FBgn0259222, intron 9 of 9) -3370 FBgn0038826 FBgn0038826 FBtr0113255 CG17838 protein_coding CTCF-S2-jox2017_R1_peak_202 chr2L 18720344 18720537 + 38 NA intron (FBgn0032707, intron 1 of 1) protein_coding-intron (FBgn0032707, intron 1 of 1) -6677 FBgn0032706 FBgn0032706 FBtr0114486 Irk3 protein_coding CTCF-S2-jox2017_R1_peak_826 chr3LHet 1289685 1289945 + 38 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_558 chr3L 4460831 4461111 + 38 NA promoter-TSS (FBgn0035547) protein_coding-promoter-TSS (FBgn0035547) 400 FBgn0035548 FBgn0035548 FBtr0331409 CG15023 protein_coding CTCF-S2-jox2017_R1_peak_1223 chrUextra 8459242 8459494 + 38 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1510 chrX 16069217 16069364 + 38 NA Intergenic Intergenic 16034 FBgn0262283 FBgn0262283 FBtr0304409 mir-985 pre_miRNA CTCF-S2-jox2017_R1_peak_590 chr3L 6894555 6894765 + 38 NA Intergenic Intergenic 12404 FBgn0041194 FBgn0041194 FBtr0076946 Prat2 protein_coding CTCF-S2-jox2017_R1_peak_307 chr2R 6245240 6245423 + 38 NA intron (FBgn0261698, intron 1 of 27) protein_coding-intron (FBgn0261698, intron 2 of 28) -1026 FBgn0261686 FBgn0261686 FBtr0303086 CG42733 protein_coding CTCF-S2-jox2017_R1_peak_1243 chrUextra 15907666 15907811 + 38 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_162 chr2L 14212354 14212499 + 38 NA intron (FBgn0016930, intron 4 of 10) protein_coding-intron (FBgn0016930, intron 3 of 9) 21696 FBgn0016930 FBgn0016930 FBtr0329933 smi35A protein_coding CTCF-S2-jox2017_R1_peak_88 chr2L 7861969 7862189 + 38 NA Intergenic Intergenic -1241 FBgn0031957 FBgn0031957 FBtr0079563 TwdlE protein_coding CTCF-S2-jox2017_R1_peak_492 chr2RHet 2780927 2781072 + 38 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1293 chrUextra 28090606 28090752 + 38 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_869 chr3R 2855169 2855478 + 38 NA Intergenic Intergenic -22734 FBgn0024289 FBgn0024289 FBtr0081627 Sodh-1 protein_coding CTCF-S2-jox2017_R1_peak_1339 chrUextra 28912126 28912271 + 38 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_550 chr3L 3870242 3870387 + 38 NA Intergenic Intergenic 14487 FBgn0264518 FBgn0264518 FBtr0333143 CR43917 ncRNA CTCF-S2-jox2017_R1_peak_899 chr3R 6092921 6093066 + 38 NA intron (FBgn0262617, intron 1 of 13) protein_coding-intron (FBgn0262617, intron 1 of 11) 5159 FBgn0040078 FBgn0040078 FBtr0082226 pont protein_coding CTCF-S2-jox2017_R1_peak_29 chr2L 3159222 3159439 + 37 NA promoter-TSS (FBgn0260817) protein_coding-promoter-TSS (FBgn0260817) -620 FBgn0260817 FBgn0260817 FBtr0077574 gkt protein_coding CTCF-S2-jox2017_R1_peak_946 chr3R 11455889 11456034 + 37 NA Intergenic Intergenic -5229 FBgn0263040 FBgn0263040 FBtr0306929 CG43335 protein_coding CTCF-S2-jox2017_R1_peak_830 chr3LHet 2390560 2390724 + 37 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_747 chr3L 18228006 18228210 + 36 NA Intergenic Intergenic -17080 FBgn0036783 FBgn0036783 FBtr0075129 CheA75a protein_coding CTCF-S2-jox2017_R1_peak_1132 chr3RHet 1030194 1030339 + 36 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_983 chr3R 13708042 13708317 + 36 NA exon (FBgn0053547, exon 19 of 27) protein_coding-exon (FBgn0053547, exon 19 of 27) -24007 FBgn0038558 FBgn0038558 FBtr0308497 CG12347 protein_coding CTCF-S2-jox2017_R1_peak_531 chr3L 2719026 2719171 + 36 NA TTS (FBgn0052296) protein_coding-TTS (FBgn0052296) -7408 FBgn0264606 FBgn0264606 FBtr0333631 CG43955 protein_coding CTCF-S2-jox2017_R1_peak_499 chr2RHet 3064379 3064549 + 36 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1173 chrU 626666 626946 + 36 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_831 chr3LHet 2397554 2397803 + 36 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_674 chr3L 12603493 12603721 + 35 NA exon (FBgn0015919, exon 1 of 5) protein_coding-exon (FBgn0015919, exon 1 of 5) 876 FBgn0015919 FBgn0015919 FBtr0075909 caup protein_coding CTCF-S2-jox2017_R1_peak_151 chr2L 12852154 12852313 + 35 NA Intergenic Intergenic -29446 FBgn0015399 FBgn0015399 FBtr0332210 kek1 protein_coding CTCF-S2-jox2017_R1_peak_1359 chrX 1450051 1450250 + 35 NA exon (FBgn0025390, exon 6 of 8) protein_coding-exon (FBgn0025390, exon 6 of 8) 2283 FBgn0065095 FBgn0065095 FBtr0091687 snmRNA:400 ncRNA CTCF-S2-jox2017_R1_peak_1049 chr3R 19806731 19806910 + 35 NA TTS (FBgn0051140) protein_coding-TTS (FBgn0051140) -2405 FBgn0051451 FBgn0051451 FBtr0308922 CR31451 ncRNA CTCF-S2-jox2017_R1_peak_282 chr2R 4260719 4260876 + 35 NA intron (FBgn0261588, intron 2 of 10) protein_coding-intron (FBgn0261588, intron 2 of 10) 2219 FBgn0033287 FBgn0033287 FBtr0088740 CG8701 protein_coding CTCF-S2-jox2017_R1_peak_313 chr2R 6380318 6380499 + 35 NA intron (FBgn0005630, intron 5 of 5) protein_coding-intron (FBgn0005630, intron 5 of 5) 12743 FBgn0033529 FBgn0033529 FBtr0088274 CG17765 protein_coding CTCF-S2-jox2017_R1_peak_1313 chrUextra 28633355 28633605 + 35 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1256 chrUextra 21375659 21375804 + 35 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_659 chr3L 11344499 11344655 + 35 NA Intergenic Intergenic 13408 FBgn0036155 FBgn0036155 FBtr0333387 CG6163 protein_coding CTCF-S2-jox2017_R1_peak_332 chr2R 7469572 7469767 + 35 NA intron (FBgn0033636, intron 11 of 15) protein_coding-intron (FBgn0033636, intron 12 of 16) 6167 FBgn0082993 FBgn0082993 FBtr0113499 snoRNA:Psi28S-1936 snoRNA CTCF-S2-jox2017_R1_peak_319 chr2R 6683808 6683970 + 34 NA Intergenic Intergenic -2037 FBgn0053144 FBgn0053144 FBtr0088254 CG33144 protein_coding CTCF-S2-jox2017_R1_peak_677 chr3L 12885683 12885828 + 34 NA promoter-TSS (FBgn0036323) protein_coding-promoter-TSS (FBgn0036323) -3 FBgn0036323 FBgn0036323 FBtr0075870 CG14118 protein_coding CTCF-S2-jox2017_R1_peak_945 chr3R 11319441 11319600 + 34 NA promoter-TSS (FBgn0038345) protein_coding-promoter-TSS (FBgn0038345) -804 FBgn0038345 FBgn0038345 FBtr0083148 CG5213 protein_coding CTCF-S2-jox2017_R1_peak_1311 chrUextra 28630885 28631030 + 34 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_732 chr3L 17212005 17212180 + 34 NA intron (FBgn0260943, intron 3 of 14) protein_coding-intron (FBgn0260943, intron 3 of 14) 19220 FBgn0260943 FBgn0260943 FBtr0113427 Rbp6 protein_coding CTCF-S2-jox2017_R1_peak_511 chr3L 673532 673695 + 34 NA Intergenic Intergenic 6713 FBgn0035151 FBgn0035151 FBtr0072614 CG17129 protein_coding CTCF-S2-jox2017_R1_peak_756 chr3L 18802299 18802507 + 34 NA exon (FBgn0036814, exon 3 of 6) protein_coding-exon (FBgn0036814, exon 3 of 6) 11372 FBgn0036814 FBgn0036814 FBtr0332801 CG14073 protein_coding CTCF-S2-jox2017_R1_peak_825 chr3LHet 1289135 1289280 + 34 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_91 chr2L 8024495 8024640 + 34 NA exon (FBgn0031975, exon 2 of 3) protein_coding-exon (FBgn0031975, exon 2 of 3) -4895 FBgn0031977 FBgn0031977 FBtr0079535 baf protein_coding CTCF-S2-jox2017_R1_peak_1058 chr3R 20513651 20513813 + 34 NA intron (FBgn0003429, intron 11 of 26) protein_coding-intron (FBgn0003429, intron 9 of 24) 17646 FBgn0261637 FBgn0261637 FBtr0303007 CG42720 protein_coding CTCF-S2-jox2017_R1_peak_684 chr3L 13853147 13853352 + 34 NA TTS (FBgn0029167) protein_coding-TTS (FBgn0029167) 6756 FBgn0036381 FBgn0036381 FBtr0075801 CG8745 protein_coding CTCF-S2-jox2017_R1_peak_494 chr2RHet 2789394 2789539 + 34 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_842 chr3R 700302 700447 + 34 NA Intergenic Intergenic 3881 FBgn0020280 FBgn0020280 FBtr0078852 laf protein_coding CTCF-S2-jox2017_R1_peak_1051 chr3R 20057421 20057567 + 34 NA exon (FBgn0043884, exon 2 of 17) protein_coding-exon (FBgn0043884, exon 2 of 17) 1210 FBgn0043884 FBgn0043884 FBtr0084563 mask protein_coding CTCF-S2-jox2017_R1_peak_1502 chrX 15127743 15127888 + 34 NA Intergenic Intergenic -3907 FBgn0030622 FBgn0030622 FBtr0074024 CG9101 protein_coding CTCF-S2-jox2017_R1_peak_1500 chrX 14996406 14996551 + 34 NA exon (FBgn0030613, exon 14 of 19) protein_coding-exon (FBgn0030613, exon 14 of 19) -6403 FBgn0030614 FBgn0030614 FBtr0074029 CG9072 protein_coding CTCF-S2-jox2017_R1_peak_1552 chrX 19219875 19220051 + 34 NA Intergenic Intergenic -3865 FBgn0259834 FBgn0259834 FBtr0074682 out protein_coding CTCF-S2-jox2017_R1_peak_451 chr2R 17776217 17776412 + 34 NA intron (FBgn0085397, intron 1 of 6) protein_coding-intron (FBgn0085397, intron 1 of 4) 5497 FBgn0085397 FBgn0085397 FBtr0330338 Fili protein_coding CTCF-S2-jox2017_R1_peak_239 chr2L 21860708 21860853 + 34 NA Intergenic Intergenic 32187 FBgn0003866 FBgn0003866 FBtr0085906 tsh protein_coding CTCF-S2-jox2017_R1_peak_1089 chr3R 23669639 23669784 + 34 NA intron (FBgn0085382, intron 2 of 11) protein_coding-intron (FBgn0085382, intron 2 of 11) -1100 FBgn0067407 FBgn0067407 FBtr0085225 Or98P pseudogene CTCF-S2-jox2017_R1_peak_1571 chrX 22092927 22093119 + 34 NA Intergenic Intergenic -58478 FBgn0052499 FBgn0052499 FBtr0077362 Cda4 protein_coding CTCF-S2-jox2017_R1_peak_1400 chrX 4984972 4985155 + 33 NA intron (FBgn0086911, intron 2 of 28) protein_coding-intron (FBgn0086911, intron 2 of 29) 5197 FBgn0086911 FBgn0086911 FBtr0070745 rg protein_coding CTCF-S2-jox2017_R1_peak_372 chr2R 10626456 10626610 + 33 NA TTS (FBgn0033958) protein_coding-TTS (FBgn0033958) 214 FBgn0263376 FBgn0263376 FBtr0309057 CR43428 ncRNA CTCF-S2-jox2017_R1_peak_1378 chrX 3273889 3274037 + 33 NA intron (FBgn0262656, intron 2 of 2) protein_coding-intron (FBgn0262656, intron 2 of 2) 6771 FBgn0262656 FBgn0262656 FBtr0070525 dm protein_coding CTCF-S2-jox2017_R1_peak_1095 chr3R 24372985 24373181 + 33 NA Intergenic Intergenic -2559 FBgn0039588 FBgn0039588 FBtr0085293 CG12413 protein_coding CTCF-S2-jox2017_R1_peak_314 chr2R 6403867 6404012 + 33 NA intron (FBgn0005630, intron 5 of 6) protein_coding-intron (FBgn0005630, intron 5 of 5) 18644 FBgn0005630 FBgn0005630 FBtr0089362 lola protein_coding CTCF-S2-jox2017_R1_peak_1190 chrU 3569378 3569523 + 33 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_700 chr3L 14843975 14844120 + 33 NA intron (FBgn0036454, intron 3 of 7) protein_coding-intron (FBgn0036454, intron 3 of 18) 43469 FBgn0085274 FBgn0085274 FBtr0302580 CG34245 protein_coding CTCF-S2-jox2017_R1_peak_1279 chrUextra 26160141 26160286 + 33 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1138 chr3RHet 1915060 1915354 + 33 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_489 chr2RHet 537480 537647 + 33 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_236 chr2L 21608871 21609052 + 33 NA Intergenic Intergenic 9813 FBgn0032955 FBgn0032955 FBtr0100511 CG2201 protein_coding CTCF-S2-jox2017_R1_peak_1347 chrUextra 28997198 28997345 + 33 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_453 chr2R 17939830 17940001 + 33 NA Intergenic Intergenic 5271 FBgn0034683 FBgn0034683 FBtr0071805 CG13500 protein_coding CTCF-S2-jox2017_R1_peak_143 chr2L 12285622 12285773 + 33 NA intron (FBgn0000114, intron 4 of 8) protein_coding-intron (FBgn0000114, intron 5 of 11) -53151 FBgn0051862 FBgn0051862 FBtr0080350 CG31862 protein_coding CTCF-S2-jox2017_R1_peak_1457 chrX 10716188 10716337 + 33 NA promoter-TSS (FBgn0262735) protein_coding-promoter-TSS (FBgn0262735) -8136 FBgn0262735 FBgn0262735 FBtr0073419 Imp protein_coding CTCF-S2-jox2017_R1_peak_322 chr2R 6960411 6960556 + 33 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -12608 FBgn0262817 FBgn0262817 FBtr0306049 CG43188 protein_coding CTCF-S2-jox2017_R1_peak_412 chr2R 14416374 14416519 + 33 NA intron (FBgn0034356, intron 1 of 1) protein_coding-intron (FBgn0034356, intron 1 of 1) -3467 FBgn0034356 FBgn0034356 FBtr0113093 CG10924 protein_coding CTCF-S2-jox2017_R1_peak_173 chr2L 15438680 15438901 + 33 NA Intergenic Intergenic 5428 FBgn0028892 FBgn0028892 FBtr0080735 CG4161 protein_coding CTCF-S2-jox2017_R1_peak_119 chr2L 9898287 9898492 + 32 NA promoter-TSS (FBgn0004867) protein_coding-promoter-TSS (FBgn0004867) -1121 FBgn0004867 FBgn0004867 FBtr0330682 RpS2 protein_coding CTCF-S2-jox2017_R1_peak_741 chr3L 17982258 17982412 + 32 NA intron (FBgn0000568, intron 4 of 7) protein_coding-intron (FBgn0000568, intron 2 of 5) 13843 FBgn0086081 FBgn0086081 FBtr0114357 snoRNA:Me28S-A30 snoRNA CTCF-S2-jox2017_R1_peak_6 chr2L 403703 403907 + 32 NA promoter-TSS (FBgn0003278) protein_coding-promoter-TSS (FBgn0003278) -500 FBgn0003278 FBgn0003278 FBtr0078054 RpI135 protein_coding CTCF-S2-jox2017_R1_peak_1406 chrX 5145643 5145804 + 31 NA TTS (FBgn0086911) protein_coding-TTS (FBgn0086911) -44404 FBgn0261803 FBgn0261803 FBtr0303279 CG42749 protein_coding CTCF-S2-jox2017_R1_peak_131 chr2L 11624195 11624379 + 31 NA exon (FBgn0015400, exon 2 of 2) protein_coding-exon (FBgn0015400, exon 2 of 2) -12515 FBgn0032368 FBgn0032368 FBtr0080268 spag4 protein_coding CTCF-S2-jox2017_R1_peak_814 chr3L 24227162 24227312 + 31 NA intron (FBgn0011288, intron 5 of 6) protein_coding-intron (FBgn0011288, intron 5 of 7) -90730 FBgn0259697 FBgn0259697 FBtr0113473 nvd protein_coding CTCF-S2-jox2017_R1_peak_889 chr3R 5268418 5268563 + 31 NA intron (FBgn0261552, intron 1 of 4) protein_coding-intron (FBgn0261552, intron 1 of 4) 13778 FBgn0037696 FBgn0037696 FBtr0082044 CG9362 protein_coding CTCF-S2-jox2017_R1_peak_702 chr3L 14918835 14919064 + 31 NA promoter-TSS (FBgn0259099) protein_coding-promoter-TSS (FBgn0259099) 18482 FBgn0040809 FBgn0040809 FBtr0075674 CG13465 protein_coding CTCF-S2-jox2017_R1_peak_395 chr2R 12481862 12482038 + 31 NA TTS (FBgn0034143) protein_coding-TTS (FBgn0034143) 268 FBgn0034142 FBgn0034142 FBtr0087120 CG8306 protein_coding CTCF-S2-jox2017_R1_peak_661 chr3L 11485809 11485993 + 31 NA intron (FBgn0036165, intron 1 of 3) protein_coding-intron (FBgn0036165, intron 1 of 3) 5251 FBgn0036165 FBgn0036165 FBtr0076093 chrb protein_coding CTCF-S2-jox2017_R1_peak_1299 chrUextra 28477550 28477724 + 30 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1183 chrU 2309661 2309987 + 30 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_924 chr3R 8806346 8806608 + 30 NA promoter-TSS (FBgn0038100) protein_coding-promoter-TSS (FBgn0038100) -291 FBgn0038100 FBgn0038100 FBtr0082693 Paip2 protein_coding CTCF-S2-jox2017_R1_peak_664 chr3L 11728986 11729131 + 30 NA exon (FBgn0036202, exon 8 of 8) protein_coding-exon (FBgn0036202, exon 8 of 8) 3814 FBgn0052087 FBgn0052087 FBtr0076117 CG32087 protein_coding CTCF-S2-jox2017_R1_peak_598 chr3L 7184217 7184362 + 30 NA Intergenic Intergenic -1272 FBgn0263218 FBgn0263218 FBtr0299546 Dscam2 protein_coding CTCF-S2-jox2017_R1_peak_566 chr3L 5118470 5118628 + 30 NA Intergenic Intergenic -4225 FBgn0035594 FBgn0035594 FBtr0077162 CG4597 protein_coding CTCF-S2-jox2017_R1_peak_1213 chrUextra 6550393 6550538 + 30 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1193 chrU 5579073 5579230 + 30 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1498 chrX 14894802 14894983 + 30 NA intron (FBgn0000535, intron 16 of 16) protein_coding-intron (FBgn0000535, intron 16 of 16) -23575 FBgn0052594 FBgn0052594 FBtr0310270 be protein_coding CTCF-S2-jox2017_R1_peak_249 chr2R 318844 319044 + 29 NA intron (FBgn0260798, intron 6 of 15) protein_coding-intron (FBgn0260798, intron 5 of 14) 39614 FBgn0260798 FBgn0260798 FBtr0302242 Gprk1 protein_coding CTCF-S2-jox2017_R1_peak_595 chr3L 6935787 6935932 + 29 NA promoter-TSS (FBgn0035719) protein_coding-promoter-TSS (FBgn0035719) -97 FBgn0035719 FBgn0035719 FBtr0113150 tow protein_coding CTCF-S2-jox2017_R1_peak_746 chr3L 18154404 18154590 + 29 NA intron (FBgn0036781, intron 1 of 5) protein_coding-intron (FBgn0036781, intron 1 of 5) 1125 FBgn0036781 FBgn0036781 FBtr0075134 CG13699 protein_coding CTCF-S2-jox2017_R1_peak_177 chr2L 15632789 15632964 + 29 NA TTS (FBgn0028518) protein_coding-TTS (FBgn0028518) 2792 FBgn0028518 FBgn0028518 FBtr0080755 CG18480 protein_coding CTCF-S2-jox2017_R1_peak_172 chr2L 15422554 15422699 + 29 NA TTS (FBgn0001983) protein_coding-TTS (FBgn0001983) 2959 FBgn0001983 FBgn0001983 FBtr0080740 wor protein_coding CTCF-S2-jox2017_R1_peak_1341 chrUextra 28922252 28922397 + 29 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1251 chrUextra 19094530 19094810 + 29 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_469 chr2R 19505544 19505689 + 29 NA Intergenic Intergenic -8990 FBgn0034885 FBgn0034885 FBtr0306384 CG4019 protein_coding CTCF-S2-jox2017_R1_peak_444 chr2R 17142755 17142965 + 29 NA promoter-TSS (FBgn0085426) protein_coding-promoter-TSS (FBgn0085426) -459 FBgn0085426 FBgn0085426 FBtr0305983 Rgk3 protein_coding CTCF-S2-jox2017_R1_peak_1504 chrX 15384725 15384870 + 29 NA intron (FBgn0027287, intron 2 of 6) protein_coding-intron (FBgn0027287, intron 2 of 6) -8246 FBgn0027287 FBgn0027287 FBtr0074043 Gmap protein_coding CTCF-S2-jox2017_R1_peak_368 chr2R 10434505 10434700 + 29 NA promoter-TSS (FBgn0050076) protein_coding-promoter-TSS (FBgn0050076) -725 FBgn0050076 FBgn0050076 FBtr0087513 CG30076 protein_coding CTCF-S2-jox2017_R1_peak_818 chr3LHet 188978 189203 + 29 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_820 chr3LHet 285662 285807 + 29 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1449 chrX 9928430 9928578 + 29 NA exon (FBgn0263132, exon 9 of 14) protein_coding-exon (FBgn0263132, exon 9 of 14) 16810 FBgn0263132 FBgn0263132 FBtr0307374 Cht6 protein_coding CTCF-S2-jox2017_R1_peak_382 chr2R 11481591 11481736 + 29 NA Intergenic Intergenic -19944 FBgn0260429 FBgn0260429 FBtr0304712 CG42524 protein_coding CTCF-S2-jox2017_R1_peak_183 chr2L 16769986 16770135 + 29 NA intron (FBgn0264695, intron 3 of 18) protein_coding-intron (FBgn0264695, intron 3 of 17) 2283 FBgn0264695 FBgn0264695 FBtr0307495 Mhc protein_coding CTCF-S2-jox2017_R1_peak_789 chr3L 21038962 21039215 + 29 NA intron (FBgn0026179, intron 1 of 5) protein_coding-intron (FBgn0026179, intron 1 of 5) -2238 FBgn0026179 FBgn0026179 FBtr0111038 siz protein_coding CTCF-S2-jox2017_R1_peak_1392 chrX 4138848 4139166 + 28 NA exon (FBgn0052774, exon 2 of 2) protein_coding-exon (FBgn0052774, exon 2 of 2) 817 FBgn0052774 FBgn0052774 FBtr0307050 Muc4B protein_coding CTCF-S2-jox2017_R1_peak_264 chr2R 2485598 2485743 + 28 NA intron (FBgn0086655, intron 1 of 6) protein_coding-intron (FBgn0086655, intron 1 of 6) 2813 FBgn0033076 FBgn0033076 FBtr0305958 CG15233 protein_coding CTCF-S2-jox2017_R1_peak_1315 chrUextra 28658873 28659151 + 28 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_832 chr3R 58059 58204 + 28 NA promoter-TSS (FBgn0015331) protein_coding-promoter-TSS (FBgn0015331) -77 FBgn0037220 FBgn0037220 FBtr0078985 CG14641 protein_coding CTCF-S2-jox2017_R1_peak_216 chr2L 19475099 19475244 + 28 NA Intergenic Intergenic -3544 FBgn0264391 FBgn0264391 FBtr0332319 CR43839 ncRNA CTCF-S2-jox2017_R1_peak_136 chr2L 11932101 11932247 + 28 NA Intergenic Intergenic -2331 FBgn0026392 FBgn0026392 FBtr0080278 Or33a protein_coding CTCF-S2-jox2017_R1_peak_1471 chrX 12647821 12647989 + 27 NA Intergenic Intergenic 6745 FBgn0020513 FBgn0020513 FBtr0073705 ade5 protein_coding CTCF-S2-jox2017_R1_peak_713 chr3L 15657095 15657240 + 27 NA Intergenic Intergenic 2200 FBgn0262528 FBgn0262528 FBtr0304968 CG43082 protein_coding CTCF-S2-jox2017_R1_peak_1318 chrUextra 28725827 28725972 + 27 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_921 chr3R 8258904 8259118 + 27 NA promoter-TSS (FBgn0038049) protein_coding-promoter-TSS (FBgn0038049) 615 FBgn0029512 FBgn0029512 FBtr0082593 Aos1 protein_coding CTCF-S2-jox2017_R1_peak_672 chr3L 12514439 12514584 + 27 NA TTS (FBgn0041775) protein_coding-TTS (FBgn0041775) 2603 FBgn0020388 FBgn0020388 FBtr0075969 Pcaf protein_coding CTCF-S2-jox2017_R1_peak_477 chr2R 20358086 20358255 + 27 NA intron (FBgn0035010, intron 1 of 8) protein_coding-intron (FBgn0035010, intron 1 of 8) -2065 FBgn0035007 FBgn0035007 FBtr0072294 CG3492 protein_coding CTCF-S2-jox2017_R1_peak_1084 chr3R 23201372 23201517 + 26 NA exon (FBgn0016061, exon 17 of 17) protein_coding-exon (FBgn0016061, exon 17 of 17) -5857 FBgn0263453 FBgn0263453 FBtr0309308 CR43476 ncRNA CTCF-S2-jox2017_R1_peak_498 chr2RHet 3062161 3062306 + 26 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_355 chr2R 9485503 9485648 + 26 NA exon (FBgn0033860, exon 1 of 1) protein_coding-exon (FBgn0033860, exon 1 of 1) 1393 FBgn0033860 FBgn0033860 FBtr0087624 S-Lap5 protein_coding CTCF-S2-jox2017_R1_peak_735 chr3L 17535337 17535492 + 25 NA exon (FBgn0259174, exon 10 of 20) protein_coding-exon (FBgn0259174, exon 10 of 20) 6813 FBgn0023197 FBgn0023197 FBtr0303101 Jon74E protein_coding CTCF-S2-jox2017_R1_peak_824 chr3LHet 1079019 1079300 + 25 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1167 chrU 89660 89841 + 25 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1295 chrUextra 28219962 28220137 + 24 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1221 chrUextra 8366538 8366683 + 24 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1202 chrUextra 342480 342625 + 24 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1514 chrX 16518602 16518763 + 24 NA TTS (FBgn0026181) protein_coding-TTS (FBgn0026181) -3063 FBgn0030763 FBgn0030763 FBtr0074288 CG9782 protein_coding CTCF-S2-jox2017_R1_peak_1171 chrU 624263 624434 + 23 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_519 chr3L 1064731 1064987 + 23 NA intron (FBgn0004870, intron 1 of 3) protein_coding-intron (FBgn0004870, intron 1 of 3) 29674 FBgn0035181 FBgn0035181 FBtr0072622 CG9205 protein_coding CTCF-S2-jox2017_R1_peak_1086 chr3R 23303190 23303335 + 23 NA Intergenic Intergenic -1137 FBgn0039519 FBgn0039519 FBtr0085183 Cyp6a18 protein_coding CTCF-S2-jox2017_R1_peak_1106 chr3R 25423961 25424106 + 23 NA TTS (FBgn0086361) protein_coding-TTS (FBgn0086361) 2551 FBgn0039673 FBgn0039673 FBtr0330294 CG7568 protein_coding CTCF-S2-jox2017_R1_peak_1104 chr3R 25386410 25386560 + 23 NA intron (FBgn0000492, intron 1 of 1) protein_coding-intron (FBgn0000492, intron 1 of 1) 4376 FBgn0000492 FBgn0000492 FBtr0085441 Dr protein_coding CTCF-S2-jox2017_R1_peak_256 chr2R 1486008 1486161 + 23 NA Intergenic Intergenic 6249 FBgn0039969 FBgn0039969 FBtr0273211 Fis1 protein_coding CTCF-S2-jox2017_R1_peak_1124 chr3R 26869295 26869453 + 23 NA TTS (FBgn0053920) protein_coding-TTS (FBgn0053920) 1453 FBgn0053920 FBgn0053920 FBtr0091924 CG33920 protein_coding CTCF-S2-jox2017_R1_peak_285 chr2R 4464545 4464709 + 23 NA exon (FBgn0259226, exon 2 of 8) protein_coding-exon (FBgn0259226, exon 2 of 8) 1364 FBgn0259226 FBgn0259226 FBtr0299788 CG42326 protein_coding CTCF-S2-jox2017_R1_peak_1308 chrUextra 28604047 28604205 + 23 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_522 chr3L 1405717 1405864 + 23 NA intron (FBgn0003138, intron 3 of 7) protein_coding-intron (FBgn0003138, intron 1 of 6) 4009 FBgn0011855 FBgn0011855 FBtr0072691 tRNA:E4:62Ae tRNA CTCF-S2-jox2017_R1_peak_1265 chrUextra 23503056 23503201 + 22 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_838 chr3R 623391 623552 + 22 NA intron (FBgn0260794, intron 2 of 10) protein_coding-intron (FBgn0260794, intron 2 of 10) -13027 FBgn0037276 FBgn0037276 FBtr0078880 CG17387 protein_coding CTCF-S2-jox2017_R1_peak_1194 chrU 6290968 6291137 + 22 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1554 chrX 19933609 19933754 + 22 NA Intergenic Intergenic -11455 FBgn0053517 FBgn0053517 FBtr0091462 D2R protein_coding CTCF-S2-jox2017_R1_peak_1241 chrUextra 15559801 15559946 + 22 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1329 chrUextra 28829128 28829375 + 22 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1402 chrX 5047067 5047364 + 22 NA intron (FBgn0086911, intron 2 of 28) protein_coding-intron (FBgn0086911, intron 2 of 29) -12149 FBgn0029746 FBgn0029746 FBtr0070742 CG15465 protein_coding CTCF-S2-jox2017_R1_peak_326 chr2R 7133083 7133230 + 22 NA promoter-TSS (FBgn0050029) pseudogene-promoter-TSS (FBgn0050029) 207 FBgn0085254 FBgn0085254 FBtr0112418 CG34225 protein_coding CTCF-S2-jox2017_R1_peak_1143 chr3RHet 2485221 2485444 + 22 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1569 chrX 21357443 21357588 + 21 NA Intergenic Intergenic -7543 FBgn0031181 FBgn0031181 FBtr0077213 Ir20a protein_coding CTCF-S2-jox2017_R1_peak_1038 chr3R 18810932 18811140 + 21 NA intron (FBgn0263390, intron 7 of 10) protein_coding-intron (FBgn0263390, intron 6 of 9) -1967 FBgn0039033 FBgn0039033 FBtr0084341 Or94a protein_coding CTCF-S2-jox2017_R1_peak_53 chr2L 4873613 4873758 + 21 NA exon (FBgn0051660, exon 12 of 14) protein_coding-exon (FBgn0051660, exon 12 of 14) 9428 FBgn0000286 FBgn0000286 FBtr0089648 Cf2 protein_coding CTCF-S2-jox2017_R1_peak_803 chr3L 22936677 22936834 + 21 NA Intergenic Intergenic -2340 FBgn0037207 FBgn0037207 FBtr0078563 Mes2 protein_coding CTCF-S2-jox2017_R1_peak_1122 chr3R 26723571 26723716 + 21 NA exon (FBgn0015032, exon 4 of 8) protein_coding-exon (FBgn0015032, exon 4 of 8) 3960 FBgn0015032 FBgn0015032 FBtr0085712 Cyp4c3 protein_coding CTCF-S2-jox2017_R1_peak_1501 chrX 15088426 15088685 + 21 NA Intergenic Intergenic 12114 FBgn0052588 FBgn0052588 FBtr0074025 CG32588 protein_coding CTCF-S2-jox2017_R1_peak_943 chr3R 11318390 11318652 + 21 NA exon (FBgn0038344, exon 6 of 6) protein_coding-exon (FBgn0038344, exon 6 of 6) -1803 FBgn0038345 FBgn0038345 FBtr0083148 CG5213 protein_coding CTCF-S2-jox2017_R1_peak_562 chr3L 4761659 4761804 + 21 NA intron (FBgn0035574, intron 5 of 10) protein_coding-intron (FBgn0035574, intron 5 of 10) 3848 FBgn0035572 FBgn0035572 FBtr0073347 CG13711 protein_coding CTCF-S2-jox2017_R1_peak_658 chr3L 11317653 11317924 + 20 NA Intergenic Intergenic -2969 FBgn0036154 FBgn0036154 FBtr0076182 CG6168 protein_coding CTCF-S2-jox2017_R1_peak_1420 chrX 6270199 6270357 + 20 NA Intergenic Intergenic -3330 FBgn0003139 FBgn0003139 FBtr0331432 PpV protein_coding CTCF-S2-jox2017_R1_peak_675 chr3L 12640783 12641061 + 20 NA exon (FBgn0052111, exon 7 of 7) protein_coding-exon (FBgn0052111, exon 7 of 7) 5268 FBgn0263379 FBgn0263379 FBtr0309061 CR43431 ncRNA CTCF-S2-jox2017_R1_peak_617 chr3L 9005508 9005653 + 20 NA TTS (FBgn0035956) protein_coding-TTS (FBgn0035956) -2642 FBgn0035955 FBgn0035955 FBtr0333909 CG5194 protein_coding CTCF-S2-jox2017_R1_peak_1451 chrX 10151619 10151764 + 19 NA promoter-TSS (FBgn0263220) protein_coding-promoter-TSS (FBgn0263220) 1029 FBgn0264674 FBgn0264674 FBtr0333763 CR43959 ncRNA CTCF-S2-jox2017_R1_peak_251 chr2R 467416 467561 + 19 NA Intergenic Intergenic -15310 FBgn0260799 FBgn0260799 FBtr0111114 p120ctn protein_coding CTCF-S2-jox2017_R1_peak_48 chr2L 4531778 4531923 + 19 NA exon (FBgn0053196, exon 19 of 47) protein_coding-exon (FBgn0053196, exon 19 of 47) 46351 FBgn0031613 FBgn0031613 FBtr0077444 HP6 protein_coding CTCF-S2-jox2017_R1_peak_821 chr3LHet 371328 371473 + 19 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1325 chrUextra 28771241 28771386 + 19 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1135 chr3RHet 1400318 1400497 + 19 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_104 chr2L 9546990 9547145 + 19 NA TTS (FBgn0032129) protein_coding-TTS (FBgn0032129) 1256 FBgn0032127 FBgn0032127 FBtr0273329 CG13114 protein_coding CTCF-S2-jox2017_R1_peak_255 chr2R 1338590 1338738 + 19 NA intron (FBgn0259247, intron 5 of 5) protein_coding-intron (FBgn0259247, intron 4 of 5) 34807 FBgn0259247 FBgn0259247 FBtr0301063 laccase2 protein_coding CTCF-S2-jox2017_R1_peak_1474 chrX 12862708 12862938 + 19 NA exon (FBgn0052644, exon 2 of 3) protein_coding-exon (FBgn0052644, exon 2 of 3) 881 FBgn0052644 FBgn0052644 FBtr0305599 Mur11Da protein_coding CTCF-S2-jox2017_R1_peak_238 chr2L 21691308 21691466 + 19 NA intron (FBgn0051619, intron 3 of 19) protein_coding-intron (FBgn0051619, intron 3 of 18) 7205 FBgn0051619 FBgn0051619 FBtr0307497 CG31619 protein_coding CTCF-S2-jox2017_R1_peak_306 chr2R 6166776 6167014 + 18 NA exon (FBgn0033504, exon 1 of 12) protein_coding-exon (FBgn0033504, exon 1 of 12) 644 FBgn0033504 FBgn0033504 FBtr0299828 CAP protein_coding CTCF-S2-jox2017_R1_peak_1278 chrUextra 26138374 26138519 + 17 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_866 chr3R 2784486 2784631 + 17 NA intron (FBgn0260642, intron 2 of 6) protein_coding-intron (FBgn0260642, intron 2 of 6) -25996 FBgn0260642 FBgn0260642 FBtr0081646 Antp protein_coding CTCF-S2-jox2017_R1_peak_807 chr3L 23657237 23657439 + 17 NA intron (FBgn0250816, intron 7 of 7) protein_coding-intron (FBgn0250816, intron 7 of 7) -51053 FBgn0039977 FBgn0039977 FBtr0333911 CG17454 protein_coding CTCF-S2-jox2017_R1_peak_1116 chr3R 26177509 26177748 + 17 NA intron (FBgn0010113, intron 2 of 5) protein_coding-intron (FBgn0010113, intron 2 of 5) 35713 FBgn0015222 FBgn0015222 FBtr0332170 Fer1HCH protein_coding CTCF-S2-jox2017_R1_peak_1564 chrX 21072771 21073115 + 16 NA TTS (FBgn0031164) protein_coding-TTS (FBgn0031164) 1425 FBgn0031164 FBgn0031164 FBtr0077257 CG1724 protein_coding CTCF-S2-jox2017_R1_peak_221 chr2L 19987499 19987736 + 16 NA intron (FBgn0264443, intron 2 of 5) protein_coding-intron (FBgn0264443, intron 2 of 5) 8788 FBgn0263611 FBgn0263611 FBtr0309974 CR43620 ncRNA CTCF-S2-jox2017_R1_peak_235 chr2L 21413899 21414044 + 16 NA Intergenic Intergenic -3107 FBgn0053801 FBgn0053801 FBtr0091805 His1:CG33801 protein_coding CTCF-S2-jox2017_R1_peak_472 chr2R 19735198 19735343 + 15 NA TTS (FBgn0034914) protein_coding-TTS (FBgn0034914) 2552 FBgn0034915 FBgn0034915 FBtr0072235 eIF6 protein_coding CTCF-S2-jox2017_R1_peak_244 chr2R 22847 23071 + 15 NA Intergenic Intergenic 4480 FBgn0262115 FBgn0262115 FBtr0111298 CG17683 protein_coding CTCF-S2-jox2017_R1_peak_426 chr2R 16165931 16166152 + 14 NA TTS (FBgn0034497) protein_coding-TTS (FBgn0034497) 460 FBgn0034496 FBgn0034496 FBtr0086304 CG9143 protein_coding CTCF-S2-jox2017_R1_peak_861 chr3R 2480843 2480988 + 14 NA intron (FBgn0010355, intron 15 of 15) protein_coding-intron (FBgn0010355, intron 13 of 13) 2293 FBgn0026566 FBgn0026566 FBtr0301623 CG1307 protein_coding CTCF-S2-jox2017_R1_peak_252 chr2R 852254 852428 + 13 NA intron (FBgn0040849, intron 1 of 4) protein_coding-intron (FBgn0040849, intron 1 of 4) 15169 FBgn0040849 FBgn0040849 FBtr0299925 Ir41a protein_coding