PeakID (cmd=annotatePeaks.pl FLAG-S2-jox2017_R1_peaks.broadPeak dm3.fa -gid -gtf Drosophila_melanogaster.BDGP5.78.chr.gtf -cpu 6) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type FLAG-S2-jox2017_R1_peak_1177 chrUextra 27346664 27347374 + 802 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1049 chrUextra 5223964 5224524 + 692 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1038 chrUextra 2684431 2684924 + 632 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1058 chrUextra 7039309 7039799 + 582 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1182 chrUextra 27485273 27485621 + 495 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1073 chrUextra 9036998 9037515 + 494 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1046 chrUextra 3809272 3809832 + 456 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1120 chrUextra 17025989 17026312 + 358 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1131 chrUextra 19603816 19604128 + 314 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1125 chrUextra 18119380 18119762 + 279 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1066 chrUextra 8133337 8133838 + 256 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_394 chr2R 16772037 16772315 + 239 NA exon (FBgn0015524, exon 6 of 6) protein_coding-exon (FBgn0015524, exon 6 of 6) 4741 FBgn0034558 FBgn0034558 FBtr0304717 CG9236 protein_coding FLAG-S2-jox2017_R1_peak_1042 chrUextra 3094442 3094776 + 238 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1090 chrUextra 11425886 11426361 + 227 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1150 chrUextra 24365697 24366007 + 210 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_313 chr2R 7829068 7829317 + 205 NA intron (FBgn0033668, intron 1 of 9) protein_coding-intron (FBgn0033668, intron 1 of 8) 2203 FBgn0033668 FBgn0033668 FBtr0088039 CG13188 protein_coding FLAG-S2-jox2017_R1_peak_1363 chrX 4593478 4593686 + 195 NA TTS (FBgn0011760) protein_coding-TTS (FBgn0011760) -2814 FBgn0028325 FBgn0028325 FBtr0070711 l(1)G0334 protein_coding FLAG-S2-jox2017_R1_peak_259 chr2R 4129143 4129364 + 192 NA Intergenic Intergenic 3889 FBgn0013726 FBgn0013726 FBtr0088793 pnut protein_coding FLAG-S2-jox2017_R1_peak_1123 chrUextra 17985564 17985855 + 180 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1379 chrX 6627658 6627800 + 171 NA intron (FBgn0263415, intron 1 of 1) protein_coding-intron (FBgn0029896, intron 1 of 3) 979 FBgn0263415 FBgn0263415 FBtr0309201 CR43461 ncRNA FLAG-S2-jox2017_R1_peak_1070 chrUextra 8511007 8511421 + 164 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1135 chrUextra 22164618 22164970 + 162 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1044 chrUextra 3204679 3204992 + 157 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1438 chrX 16456403 16456655 + 156 NA exon (FBgn0030758, exon 2 of 2) protein_coding-exon (FBgn0030758, exon 2 of 2) -2473 FBgn0011826 FBgn0011826 FBtr0074294 Pp2B-14D protein_coding FLAG-S2-jox2017_R1_peak_1031 chrU 9151130 9151459 + 156 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1386 chrX 7584821 7585065 + 154 NA intron (FBgn0029504, intron 1 of 5) protein_coding-intron (FBgn0029504, intron 1 of 5) 4008 FBgn0029504 FBgn0029504 FBtr0071079 CHES-1-like protein_coding FLAG-S2-jox2017_R1_peak_1146 chrUextra 23887278 23887418 + 152 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1041 chrUextra 3080787 3081246 + 151 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_707 chr3R 845247 845431 + 148 NA Intergenic Intergenic -8586 FBgn0037292 FBgn0037292 FBtr0301312 CG2022 protein_coding FLAG-S2-jox2017_R1_peak_1121 chrUextra 17373698 17374012 + 142 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1260 chrUextra 28737221 28737374 + 138 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_713 chr3R 1108618 1108862 + 134 NA exon (FBgn0013576, exon 1 of 5) protein_coding-exon (FBgn0013576, exon 1 of 5) -5183 FBgn0051538 FBgn0051538 FBtr0078819 CG31538 protein_coding FLAG-S2-jox2017_R1_peak_363 chr2R 13949469 13949723 + 132 NA promoter-TSS (FBgn0085415) protein_coding-promoter-TSS (FBgn0085415) -613 FBgn0085415 FBgn0085415 FBtr0112627 CG34386 protein_coding FLAG-S2-jox2017_R1_peak_1265 chrUextra 28746040 28746411 + 124 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1095 chrUextra 12442319 12442696 + 120 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1158 chrUextra 25557721 25557867 + 119 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1083 chrUextra 10241359 10241735 + 119 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_309 chr2R 7550344 7550532 + 118 NA intron (FBgn0044020, intron 3 of 3) protein_coding-intron (FBgn0044020, intron 2 of 2) -2298 FBgn0011916 FBgn0011916 FBtr0088086 tRNA:M2:48Bb tRNA FLAG-S2-jox2017_R1_peak_1088 chrUextra 11242085 11242315 + 115 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1057 chrUextra 6950131 6950446 + 114 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1351 chrX 3347147 3347395 + 110 NA Intergenic Intergenic 7002 FBgn0029659 FBgn0029659 FBtr0331608 CG16782 protein_coding FLAG-S2-jox2017_R1_peak_76 chr2L 8566356 8566605 + 106 NA intron (FBgn0011259, intron 3 of 20) protein_coding-intron (FBgn0011259, intron 3 of 21) -4408 FBgn0051895 FBgn0051895 FBtr0079692 tRNA:CR31895 tRNA FLAG-S2-jox2017_R1_peak_560 chr3L 10849663 10849881 + 105 NA Intergenic Intergenic -1732 FBgn0026160 FBgn0026160 FBtr0076268 tna protein_coding FLAG-S2-jox2017_R1_peak_1155 chrUextra 25124576 25124843 + 104 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1439 chrX 16527710 16527959 + 102 NA intron (FBgn0026181, intron 2 of 10) protein_coding-intron (FBgn0026181, intron 2 of 10) -1566 FBgn0030764 FBgn0030764 FBtr0074287 CG9777 protein_coding FLAG-S2-jox2017_R1_peak_15 chr2L 2376196 2376380 + 102 NA promoter-TSS (FBgn0031420) protein_coding-promoter-TSS (FBgn0031420) 447 FBgn0031420 FBgn0031420 FBtr0331437 CG9866 protein_coding FLAG-S2-jox2017_R1_peak_40 chr2L 4811744 4811986 + 101 NA Intergenic Intergenic -1144 FBgn0031630 FBgn0031630 FBtr0077383 CG15629 protein_coding FLAG-S2-jox2017_R1_peak_287 chr2R 5911387 5911633 + 97 NA intron (FBgn0022382, intron 2 of 9) protein_coding-intron (FBgn0022382, intron 2 of 9) 2037 FBgn0022382 FBgn0022382 FBtr0112902 Pka-R2 protein_coding FLAG-S2-jox2017_R1_peak_1404 chrX 10629737 10629956 + 95 NA intron (FBgn0052676, intron 1 of 3) protein_coding-intron (FBgn0052676, intron 1 of 3) -8689 FBgn0003204 FBgn0003204 FBtr0071496 ras protein_coding FLAG-S2-jox2017_R1_peak_446 chr2RHet 1 296 + 95 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1169 chrUextra 26582218 26582471 + 94 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1030 chrU 9143002 9143250 + 93 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1107 chrUextra 14301901 14302169 + 92 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_614 chr3L 16428625 16428874 + 91 NA intron (FBgn0261799, intron 1 of 4) protein_coding-intron (FBgn0053158, intron 3 of 5) 16052 FBgn0053158 FBgn0053158 FBtr0075390 CG33158 protein_coding FLAG-S2-jox2017_R1_peak_1102 chrUextra 13674389 13674688 + 91 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1113 chrUextra 15572696 15572944 + 91 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1213 chrUextra 28342782 28343034 + 89 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1068 chrUextra 8455327 8456136 + 88 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1053 chrUextra 5832187 5832477 + 88 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1001 chr3RHet 2136539 2136769 + 87 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_719 chr3R 1526828 1527016 + 86 NA intron (FBgn0261261, intron 3 of 9) protein_coding-intron (FBgn0261261, intron 3 of 9) -1453 FBgn0261261 FBgn0261261 FBtr0302090 plx protein_coding FLAG-S2-jox2017_R1_peak_1097 chrUextra 13217354 13217523 + 85 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_882 chr3R 17415526 17415725 + 84 NA intron (FBgn0013984, intron 2 of 12) protein_coding-intron (FBgn0013984, intron 2 of 12) 288 FBgn0013984 FBgn0013984 FBtr0290232 InR protein_coding FLAG-S2-jox2017_R1_peak_1149 chrUextra 24282097 24282478 + 83 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1056 chrUextra 6346374 6346807 + 81 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1318 chrUextra 28933519 28933661 + 81 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_113 chr2L 13322052 13322296 + 80 NA intron (FBgn0264308, intron 1 of 5) protein_coding-intron (FBgn0264308, intron 1 of 5) 8947 FBgn0264308 FBgn0264308 FBtr0331504 CG43778 protein_coding FLAG-S2-jox2017_R1_peak_1118 chrUextra 16632118 16632365 + 80 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1189 chrUextra 27826129 27826274 + 79 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1157 chrUextra 25505516 25505789 + 78 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1296 chrUextra 28878514 28879009 + 77 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_675 chr3L 22324297 22324483 + 77 NA TTS (FBgn0052450) protein_coding-TTS (FBgn0052450) 1512 FBgn0052450 FBgn0052450 FBtr0078501 CG32450 protein_coding FLAG-S2-jox2017_R1_peak_1234 chrUextra 28582578 28582720 + 76 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1252 chrUextra 28689427 28689621 + 75 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1021 chrU 2149631 2149882 + 75 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1152 chrUextra 24405960 24406212 + 75 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1026 chrU 2769058 2769329 + 75 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1258 chrUextra 28734831 28735151 + 73 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1000 chr3RHet 2107069 2107315 + 73 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1124 chrUextra 18018525 18018857 + 72 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_559 chr3L 10786729 10786907 + 71 NA Intergenic Intergenic -7472 FBgn0036102 FBgn0036102 FBtr0076266 CG12523 protein_coding FLAG-S2-jox2017_R1_peak_397 chr2R 16885568 16885786 + 70 NA intron (FBgn0034570, intron 1 of 6) protein_coding-intron (FBgn0034570, intron 1 of 6) 1952 FBgn0034570 FBgn0034570 FBtr0303195 CG10543 protein_coding FLAG-S2-jox2017_R1_peak_1099 chrUextra 13457168 13457424 + 70 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1126 chrUextra 18286311 18286603 + 70 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1327 chrUextra 28977280 28977421 + 69 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_152 chr2L 17243198 17243413 + 68 NA intron (FBgn0032629, intron 2 of 6) protein_coding-intron (FBgn0032629, intron 2 of 5) 3946 FBgn0040987 FBgn0040987 FBtr0304947 CG15139 protein_coding FLAG-S2-jox2017_R1_peak_85 chr2L 9731499 9731664 + 68 NA TTS (FBgn0032139) protein_coding-TTS (FBgn0032139) 1641 FBgn0032139 FBgn0032139 FBtr0079863 CG13116 protein_coding FLAG-S2-jox2017_R1_peak_1259 chrUextra 28735871 28736129 + 68 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1275 chrUextra 28804636 28804881 + 68 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_622 chr3L 16923742 16923916 + 67 NA TTS (FBgn0036678) protein_coding-TTS (FBgn0036678) -3295 FBgn0036677 FBgn0036677 FBtr0075307 CG13023 protein_coding FLAG-S2-jox2017_R1_peak_1108 chrUextra 14369224 14369468 + 67 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_792 chr3R 9843432 9843662 + 67 NA intron (FBgn0264493, intron 2 of 8) protein_coding-intron (FBgn0264493, intron 2 of 8) 8134 FBgn0264493 FBgn0264493 FBtr0301632 rdx protein_coding FLAG-S2-jox2017_R1_peak_1203 chrUextra 28172171 28172419 + 65 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1085 chrUextra 10890798 10891130 + 64 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1241 chrUextra 28628678 28628922 + 63 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1434 chrX 16041751 16042066 + 62 NA exon (FBgn0042650, exon 1 of 4) protein_coding-exon (FBgn0042650, exon 1 of 4) -23543 FBgn0042650 FBgn0042650 FBtr0310303 disco-r protein_coding FLAG-S2-jox2017_R1_peak_1172 chrUextra 27077272 27077520 + 62 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_703 chr3R 627787 628007 + 62 NA promoter-TSS (FBgn0260794) protein_coding-promoter-TSS (FBgn0260794) 9886 FBgn0260794 FBgn0260794 FBtr0303915 ctrip protein_coding FLAG-S2-jox2017_R1_peak_1114 chrUextra 15907567 15907807 + 61 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1410 chrX 11580264 11580471 + 61 NA intron (FBgn0014133, intron 3 of 6) protein_coding-intron (FBgn0014133, intron 3 of 5) 7339 FBgn0014133 FBgn0014133 FBtr0073526 bif protein_coding FLAG-S2-jox2017_R1_peak_1139 chrUextra 22459649 22459888 + 60 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1332 chrUextra 28991319 28991555 + 60 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_787 chr3R 9465855 9465994 + 59 NA exon (FBgn0263396, exon 5 of 5) protein_coding-exon (FBgn0263396, exon 5 of 5) 6102 FBgn0263396 FBgn0263396 FBtr0082854 sqd protein_coding FLAG-S2-jox2017_R1_peak_1206 chrUextra 28228279 28228561 + 58 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1175 chrUextra 27315956 27316197 + 58 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1323 chrUextra 28953168 28953418 + 57 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1136 chrUextra 22179042 22179278 + 57 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1069 chrUextra 8459245 8459488 + 57 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1253 chrUextra 28694962 28695101 + 57 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_334 chr2R 9888379 9888524 + 56 NA intron (FBgn0002643, intron 2 of 6) protein_coding-intron (FBgn0002643, intron 2 of 6) 5035 FBgn0263539 FBgn0263539 FBtr0309641 mir-4978 pre_miRNA FLAG-S2-jox2017_R1_peak_1316 chrUextra 28929790 28930038 + 56 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1144 chrUextra 23503062 23503310 + 56 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1174 chrUextra 27225161 27225400 + 56 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1223 chrUextra 28499002 28499185 + 55 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1292 chrUextra 28855752 28855994 + 55 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1033 chrU 9934782 9935045 + 55 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1228 chrUextra 28551624 28551879 + 55 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1166 chrUextra 26311050 26311297 + 54 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1240 chrUextra 28618056 28618300 + 53 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1040 chrUextra 3022854 3023102 + 53 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1028 chrU 4022786 4022980 + 53 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1145 chrUextra 23704240 23704725 + 53 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_306 chr2R 7254003 7254196 + 53 NA promoter-TSS (FBgn0033627) protein_coding-promoter-TSS (FBgn0033627) -1685 FBgn0033627 FBgn0033627 FBtr0088129 CG13204 protein_coding FLAG-S2-jox2017_R1_peak_1063 chrUextra 7470330 7470683 + 53 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1286 chrUextra 28839925 28840167 + 52 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1193 chrUextra 27955455 27955695 + 52 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_537 chr3L 8418273 8418440 + 52 NA exon (FBgn0020224, exon 1 of 5) protein_coding-exon (FBgn0020224, exon 1 of 5) 302 FBgn0020224 FBgn0020224 FBtr0076614 Cbl protein_coding FLAG-S2-jox2017_R1_peak_820 chr3R 11925478 11925627 + 52 NA intron (FBgn0010379, intron 1 of 6) protein_coding-intron (FBgn0010379, intron 1 of 6) 614 FBgn0010379 FBgn0010379 FBtr0083228 Akt1 protein_coding FLAG-S2-jox2017_R1_peak_1235 chrUextra 28583075 28583809 + 52 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_725 chr3R 2242401 2242611 + 51 NA intron (FBgn0264495, intron 2 of 9) protein_coding-intron (FBgn0264495, intron 2 of 8) 9927 FBgn0264495 FBgn0264495 FBtr0303788 gpp protein_coding FLAG-S2-jox2017_R1_peak_295 chr2R 6241213 6241444 + 50 NA promoter-TSS (FBgn0262790) protein_coding-promoter-TSS (FBgn0262790) 455 FBgn0250840 FBgn0250840 FBtr0305904 CG12907 protein_coding FLAG-S2-jox2017_R1_peak_1029 chrU 7316198 7316337 + 50 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1043 chrUextra 3142587 3142765 + 50 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1388 chrX 7817232 7817456 + 50 NA exon (FBgn0029979, exon 4 of 4) protein_coding-exon (FBgn0029979, exon 4 of 4) 2902 FBgn0260858 FBgn0260858 FBtr0071093 Ykt6 protein_coding FLAG-S2-jox2017_R1_peak_1173 chrUextra 27214174 27214411 + 50 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1459 chrX 20223533 20223755 + 50 NA Intergenic Intergenic 23905 FBgn0031103 FBgn0031103 FBtr0077332 CG12679 protein_coding FLAG-S2-jox2017_R1_peak_1061 chrUextra 7328771 7329013 + 50 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1330 chrUextra 28982887 28983165 + 49 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1280 chrUextra 28821453 28821766 + 49 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1421 chrX 13487753 13487893 + 49 NA TTS (FBgn0086674) protein_coding-TTS (FBgn0086674) 8713 FBgn0004169 FBgn0004169 FBtr0073853 up protein_coding FLAG-S2-jox2017_R1_peak_1293 chrUextra 28858964 28859205 + 48 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_852 chr3R 14839804 14840134 + 48 NA intron (FBgn0026239, intron 4 of 4) protein_coding-intron (FBgn0026239, intron 4 of 4) 9775 FBgn0038672 FBgn0038672 FBtr0083719 CG6005 protein_coding FLAG-S2-jox2017_R1_peak_343 chr2R 11023916 11024295 + 48 NA intron (FBgn0015371, intron 1 of 5) protein_coding-intron (FBgn0015371, intron 1 of 4) 8919 FBgn0262954 FBgn0262954 FBtr0112379 Rpb12 protein_coding FLAG-S2-jox2017_R1_peak_1347 chrX 2230481 2230621 + 47 NA intron (FBgn0003079, intron 2 of 5) protein_coding-intron (FBgn0003079, intron 2 of 5) -4110 FBgn0044047 FBgn0044047 FBtr0333731 Ilp6 protein_coding FLAG-S2-jox2017_R1_peak_671 chr3L 21739999 21740213 + 47 NA exon (FBgn0037130, exon 7 of 8) protein_coding-exon (FBgn0037130, exon 7 of 8) -2737 FBgn0037129 FBgn0037129 FBtr0078452 CG14565 protein_coding FLAG-S2-jox2017_R1_peak_627 chr3L 17343453 17343598 + 47 NA promoter-TSS (FBgn0036713) protein_coding-promoter-TSS (FBgn0036713) -759 FBgn0036713 FBgn0036713 FBtr0075241 Mip protein_coding FLAG-S2-jox2017_R1_peak_1047 chrUextra 4202888 4203133 + 47 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1127 chrUextra 19094523 19094806 + 47 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1129 chrUextra 19267849 19268077 + 47 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1167 chrUextra 26370683 26370915 + 47 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1133 chrUextra 20554764 20555034 + 47 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1263 chrUextra 28740091 28740330 + 47 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1329 chrUextra 28981819 28982051 + 47 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1321 chrUextra 28940551 28940692 + 46 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1403 chrX 10624512 10624651 + 46 NA intron (FBgn0052676, intron 1 of 3) protein_coding-intron (FBgn0052676, intron 1 of 3) -13954 FBgn0003204 FBgn0003204 FBtr0071496 ras protein_coding FLAG-S2-jox2017_R1_peak_1281 chrUextra 28829091 28829369 + 46 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_270 chr2R 4530601 4530766 + 46 NA Intergenic Intergenic -6457 FBgn0003892 FBgn0003892 FBtr0089427 ptc protein_coding FLAG-S2-jox2017_R1_peak_1238 chrUextra 28604062 28604333 + 46 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_330 chr2R 9579244 9579400 + 46 NA exon (FBgn0033865, exon 2 of 2) protein_coding-exon (FBgn0033865, exon 2 of 2) 1552 FBgn0033865 FBgn0033865 FBtr0087650 CG6220 protein_coding FLAG-S2-jox2017_R1_peak_64 chr2L 6794129 6794292 + 46 NA intron (FBgn0015777, intron 1 of 6) protein_coding-intron (FBgn0015777, intron 3 of 7) 3984 FBgn0015777 FBgn0015777 FBtr0100381 nrv2 protein_coding FLAG-S2-jox2017_R1_peak_1359 chrX 4453338 4453587 + 46 NA exon (FBgn0029716, exon 1 of 1) protein_coding-exon (FBgn0029716, exon 1 of 1) 1357 FBgn0029716 FBgn0029716 FBtr0070679 CG3546 protein_coding FLAG-S2-jox2017_R1_peak_1156 chrUextra 25194710 25194860 + 46 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1405 chrX 10645157 10645305 + 46 NA exon (FBgn0030230, exon 3 of 5) protein_coding-exon (FBgn0030230, exon 3 of 5) -6293 FBgn0052676 FBgn0052676 FBtr0071503 CG32676 protein_coding FLAG-S2-jox2017_R1_peak_1210 chrUextra 28309342 28309577 + 45 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1128 chrUextra 19108665 19108914 + 45 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_302 chr2R 7116170 7116313 + 45 NA intron (FBgn0050021, intron 4 of 7) protein_coding-intron (FBgn0050021, intron 5 of 8) 3815 FBgn0050021 FBgn0050021 FBtr0114570 metro protein_coding FLAG-S2-jox2017_R1_peak_1333 chrUextra 28994784 28995028 + 45 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_298 chr2R 6452432 6452587 + 45 NA intron (FBgn0263102, intron 3 of 10) protein_coding-intron (FBgn0263102, intron 3 of 9) 7116 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding FLAG-S2-jox2017_R1_peak_1298 chrUextra 28886588 28886817 + 45 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1147 chrUextra 23971046 23971306 + 44 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_909 chr3R 20303297 20303446 + 44 NA Intergenic Intergenic -7888 FBgn0000039 FBgn0000039 FBtr0084640 nAcRalpha-96Ab protein_coding FLAG-S2-jox2017_R1_peak_291 chr2R 5989215 5989447 + 44 NA intron (FBgn0004907, intron 1 of 6) protein_coding-intron (FBgn0004907, intron 1 of 6) -2240 FBgn0033485 FBgn0033485 FBtr0088425 RpLP0-like protein_coding FLAG-S2-jox2017_R1_peak_1272 chrUextra 28779971 28780206 + 44 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_451 chr2RHet 3065612 3065773 + 44 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_108 chr2L 12127570 12127753 + 44 NA exon (FBgn0032414, exon 5 of 6) protein_coding-exon (FBgn0032414, exon 5 of 6) 5706 FBgn0032415 FBgn0032415 FBtr0080360 rho-6 protein_coding FLAG-S2-jox2017_R1_peak_1233 chrUextra 28579970 28580213 + 44 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_994 chr3RHet 183966 184238 + 44 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1096 chrUextra 12698842 12699085 + 44 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_39 chr2L 4804049 4804189 + 43 NA Intergenic Intergenic -2196 FBgn0031629 FBgn0031629 FBtr0332595 Clect27 protein_coding FLAG-S2-jox2017_R1_peak_1357 chrX 3673807 3673999 + 43 NA promoter-TSS (FBgn0086899) protein_coding-promoter-TSS (FBgn0086899) 2414 FBgn0263532 FBgn0263532 FBtr0309622 mir-4962 pre_miRNA FLAG-S2-jox2017_R1_peak_1205 chrUextra 28219868 28220438 + 43 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1345 chrX 1519455 1519704 + 43 NA intron (FBgn0000210, intron 3 of 8) protein_coding-intron (FBgn0000210, intron 2 of 7) -7391 FBgn0025390 FBgn0025390 FBtr0070284 Mur2B protein_coding FLAG-S2-jox2017_R1_peak_561 chr3L 10891112 10891281 + 43 NA exon (FBgn0036111, exon 1 of 4) protein_coding-exon (FBgn0036111, exon 1 of 4) 1027 FBgn0036111 FBgn0036111 FBtr0076251 Aps protein_coding FLAG-S2-jox2017_R1_peak_1237 chrUextra 28594537 28595007 + 43 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_830 chr3R 12795346 12795541 + 42 NA intron (FBgn0000015, intron 1 of 6) protein_coding-intron (FBgn0000015, intron 1 of 6) -5483 FBgn0038458 FBgn0038458 FBtr0083366 VhaM9.7-d protein_coding FLAG-S2-jox2017_R1_peak_587 chr3L 13950739 13950879 + 42 NA intron (FBgn0052137, intron 2 of 6) protein_coding-intron (FBgn0052137, intron 2 of 6) 6993 FBgn0025874 FBgn0025874 FBtr0333030 Meics protein_coding FLAG-S2-jox2017_R1_peak_1454 chrX 19531952 19532092 + 42 NA promoter-TSS (FBgn0031047) protein_coding-promoter-TSS (FBgn0031047) 363 FBgn0087008 FBgn0087008 FBtr0074762 e(y)3 protein_coding FLAG-S2-jox2017_R1_peak_1282 chrUextra 28830787 28831061 + 42 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_616 chr3L 16579431 16579667 + 42 NA promoter-TSS (FBgn0052163) protein_coding-promoter-TSS (FBgn0052163) 608 FBgn0036643 FBgn0036643 FBtr0075365 Syx8 protein_coding FLAG-S2-jox2017_R1_peak_20 chr2L 3047091 3047254 + 42 NA TTS (FBgn0263847) ncRNA-TTS (FBgn0263847) 426 FBgn0263847 FBgn0263847 FBtr0321322 CR43708 ncRNA FLAG-S2-jox2017_R1_peak_1267 chrUextra 28757657 28757883 + 41 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_761 chr3R 5926317 5926477 + 41 NA promoter-TSS (FBgn0262459) pre_miRNA-promoter-TSS (FBgn0262459) -277 FBgn0262459 FBgn0262459 FBtr0304500 mir-34 pre_miRNA FLAG-S2-jox2017_R1_peak_391 chr2R 16664657 16664854 + 41 NA promoter-TSS (FBgn0263848) protein_coding-promoter-TSS (FBgn0263848) 499 FBgn0263849 FBgn0263849 FBtr0321316 CG43710 protein_coding FLAG-S2-jox2017_R1_peak_319 chr2R 8304924 8305135 + 41 NA exon (FBgn0033732, exon 2 of 2) protein_coding-exon (FBgn0033732, exon 2 of 2) 1069 FBgn0033732 FBgn0033732 FBtr0087925 CG13157 protein_coding FLAG-S2-jox2017_R1_peak_182 chr2L 19549446 19549624 + 41 NA promoter-TSS (FBgn0041180) protein_coding-promoter-TSS (FBgn0041180) 1028 FBgn0041180 FBgn0041180 FBtr0331329 TepIV protein_coding FLAG-S2-jox2017_R1_peak_1277 chrUextra 28816095 28816321 + 41 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_929 chr3R 22157138 22157277 + 41 NA exon (FBgn0053970, exon 2 of 9) protein_coding-exon (FBgn0053970, exon 2 of 9) -6210 FBgn0261833 FBgn0261833 FBtr0303394 CG42765 protein_coding FLAG-S2-jox2017_R1_peak_797 chr3R 10204790 10204965 + 41 NA Intergenic Intergenic 2544 FBgn0038225 FBgn0038225 FBtr0082940 soti protein_coding FLAG-S2-jox2017_R1_peak_1142 chrUextra 23067260 23067515 + 40 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1325 chrUextra 28970531 28971045 + 40 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1187 chrUextra 27757083 27757308 + 40 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1225 chrUextra 28531100 28531246 + 40 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_791 chr3R 9809535 9809692 + 40 NA promoter-TSS (FBgn0264493) protein_coding-promoter-TSS (FBgn0264493) 12158 FBgn0263414 FBgn0263414 FBtr0309198 CR43460 ncRNA FLAG-S2-jox2017_R1_peak_293 chr2R 6190139 6190298 + 40 NA promoter-TSS (FBgn0033504) protein_coding-promoter-TSS (FBgn0033504) 7058 FBgn0028426 FBgn0028426 FBtr0088360 JhI-1 protein_coding FLAG-S2-jox2017_R1_peak_1199 chrUextra 28031484 28031721 + 39 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_485 chr3L 2766202 2766342 + 39 NA promoter-TSS (FBgn0035370) protein_coding-promoter-TSS (FBgn0035370) -727 FBgn0035370 FBgn0035370 FBtr0072969 CG1240 protein_coding FLAG-S2-jox2017_R1_peak_1091 chrUextra 11675848 11676080 + 39 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1314 chrUextra 28922883 28923415 + 39 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1249 chrUextra 28673025 28673269 + 39 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1082 chrUextra 10240807 10241029 + 39 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1384 chrX 7103363 7103593 + 39 NA intron (FBgn0029939, intron 1 of 3) protein_coding-intron (FBgn0029939, intron 2 of 5) 13416 FBgn0029939 FBgn0029939 FBtr0301241 CG9650 protein_coding FLAG-S2-jox2017_R1_peak_1422 chrX 14424721 14424861 + 39 NA Intergenic Intergenic 34621 FBgn0030570 FBgn0030570 FBtr0073929 CG12540 protein_coding FLAG-S2-jox2017_R1_peak_1072 chrUextra 8920173 8920415 + 39 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_342 chr2R 11022992 11023145 + 39 NA intron (FBgn0015371, intron 1 of 5) protein_coding-intron (FBgn0015371, intron 1 of 4) 9956 FBgn0262954 FBgn0262954 FBtr0112379 Rpb12 protein_coding FLAG-S2-jox2017_R1_peak_1220 chrUextra 28425828 28426053 + 38 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_522 chr3L 6736784 6737007 + 38 NA promoter-TSS (FBgn0261934) protein_coding-promoter-TSS (FBgn0261934) -631 FBgn0261934 FBgn0261934 FBtr0303748 dikar protein_coding FLAG-S2-jox2017_R1_peak_206 chr2L 22320817 22321002 + 38 NA intron (FBgn0039972, intron 1 of 6) protein_coding-intron (FBgn0039972, intron 1 of 6) -19713 FBgn0263091 FBgn0263091 FBtr0307110 CR43359 pseudogene FLAG-S2-jox2017_R1_peak_546 chr3L 9328851 9329000 + 38 NA promoter-TSS (FBgn0035975) protein_coding-promoter-TSS (FBgn0035975) 136 FBgn0035975 FBgn0035975 FBtr0076433 PGRP-LA protein_coding FLAG-S2-jox2017_R1_peak_1385 chrX 7195108 7195289 + 38 NA intron (FBgn0029941, intron 2 of 6) protein_coding-intron (FBgn0029941, intron 2 of 6) -6776 FBgn0024250 FBgn0024250 FBtr0071048 brk protein_coding FLAG-S2-jox2017_R1_peak_1178 chrUextra 27370449 27370682 + 38 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_227 chr2R 1934681 1934870 + 38 NA promoter-TSS (FBgn0085240) protein_coding-promoter-TSS (FBgn0085240) 100 FBgn0085240 FBgn0085240 FBtr0112404 CG34211 protein_coding FLAG-S2-jox2017_R1_peak_660 chr3L 20510578 20510735 + 38 NA promoter-TSS (FBgn0037007) protein_coding-promoter-TSS (FBgn0037007) -252 FBgn0037007 FBgn0037007 FBtr0078217 CG5059 protein_coding FLAG-S2-jox2017_R1_peak_1354 chrX 3638589 3638747 + 38 NA intron (FBgn0086899, intron 1 of 7) protein_coding-intron (FBgn0086899, intron 1 of 7) -25003 FBgn0015286 FBgn0015286 FBtr0070584 Rala protein_coding FLAG-S2-jox2017_R1_peak_591 chr3L 14104626 14104799 + 38 NA TTS (FBgn0042630) protein_coding-TTS (FBgn0042630) -3494 FBgn0036411 FBgn0036411 FBtr0330178 Sox21a protein_coding FLAG-S2-jox2017_R1_peak_1191 chrUextra 27923363 27923802 + 38 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1183 chrUextra 27512736 27512875 + 37 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1239 chrUextra 28616552 28616793 + 37 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1164 chrUextra 26160150 26160381 + 37 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1195 chrUextra 27983131 27983354 + 37 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1209 chrUextra 28281771 28282008 + 37 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_844 chr3R 14075045 14075252 + 37 NA TTS (FBgn0020238) protein_coding-TTS (FBgn0020238) -1688 FBgn0038589 FBgn0038589 FBtr0083569 CG18598 protein_coding FLAG-S2-jox2017_R1_peak_1355 chrX 3643014 3643153 + 37 NA exon (FBgn0086899, exon 2 of 10) protein_coding-exon (FBgn0086899, exon 2 of 10) -23590 FBgn0086899 FBgn0086899 FBtr0070596 tlk protein_coding FLAG-S2-jox2017_R1_peak_1331 chrUextra 28986603 28986888 + 37 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_168 chr2L 18629219 18629404 + 37 NA intron (FBgn0032694, intron 1 of 2) protein_coding-intron (FBgn0032694, intron 1 of 3) 12054 FBgn0032694 FBgn0032694 FBtr0329972 MESR3 protein_coding FLAG-S2-jox2017_R1_peak_650 chr3L 19852308 19852479 + 37 NA exon (FBgn0020389, exon 4 of 5) protein_coding-exon (FBgn0020389, exon 4 of 5) 11785 FBgn0262518 FBgn0262518 FBtr0308832 Rab8 protein_coding FLAG-S2-jox2017_R1_peak_1163 chrUextra 26138380 26138617 + 36 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1299 chrUextra 28887065 28887300 + 36 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1154 chrUextra 24910068 24910298 + 36 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1138 chrUextra 22440612 22440895 + 36 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1301 chrUextra 28896768 28897010 + 36 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_875 chr3R 16957117 16957282 + 36 NA exon (FBgn0038860, exon 2 of 2) protein_coding-exon (FBgn0038860, exon 2 of 2) 1258 FBgn0038860 FBgn0038860 FBtr0084015 Ice2 protein_coding FLAG-S2-jox2017_R1_peak_1039 chrUextra 2900672 2900930 + 36 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1429 chrX 15405563 15405710 + 36 NA TTS (FBgn0027287) protein_coding-TTS (FBgn0027287) 2124 FBgn0262395 FBgn0262395 FBtr0304289 mir-12 pre_miRNA FLAG-S2-jox2017_R1_peak_1366 chrX 5048720 5048957 + 35 NA intron (FBgn0086911, intron 2 of 28) protein_coding-intron (FBgn0086911, intron 2 of 29) -10526 FBgn0029746 FBgn0029746 FBtr0070742 CG15465 protein_coding FLAG-S2-jox2017_R1_peak_833 chr3R 13129526 13129677 + 35 NA Intergenic Intergenic 16091 FBgn0263501 FBgn0263501 FBtr0309517 CR43490 ncRNA FLAG-S2-jox2017_R1_peak_1452 chrX 19192521 19192660 + 35 NA promoter-TSS (FBgn0031011) protein_coding-promoter-TSS (FBgn0031011) 3316 FBgn0065084 FBgn0065084 FBtr0091699 snmRNA:763 ncRNA FLAG-S2-jox2017_R1_peak_1184 chrUextra 27670997 27671392 + 35 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1245 chrUextra 28641310 28641453 + 35 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_500 chr3L 4225773 4225972 + 35 NA promoter-TSS (FBgn0001257) protein_coding-promoter-TSS (FBgn0001257) 1430 FBgn0001257 FBgn0001257 FBtr0073250 ImpL2 protein_coding FLAG-S2-jox2017_R1_peak_880 chr3R 17267659 17267815 + 35 NA exon (FBgn0011278, exon 2 of 2) protein_coding-exon (FBgn0011278, exon 2 of 2) 4305 FBgn0011278 FBgn0011278 FBtr0084091 lbe protein_coding FLAG-S2-jox2017_R1_peak_1393 chrX 8551206 8551416 + 34 NA Intergenic Intergenic -6597 FBgn0004102 FBgn0004102 FBtr0331305 oc protein_coding FLAG-S2-jox2017_R1_peak_1075 chrUextra 9215549 9215797 + 34 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1140 chrUextra 22466003 22466142 + 34 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1264 chrUextra 28743200 28743670 + 34 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1078 chrUextra 9848858 9849134 + 34 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1092 chrUextra 11781158 11781399 + 34 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_901 chr3R 19699662 19699876 + 34 NA intron (FBgn0025574, intron 2 of 9) protein_coding-intron (FBgn0025574, intron 2 of 9) -14417 FBgn0004185 FBgn0004185 FBtr0084528 snRNA:U1:95Ca snRNA FLAG-S2-jox2017_R1_peak_37 chr2L 4643203 4643342 + 34 NA TTS (FBgn0083938) protein_coding-TTS (FBgn0083938) 300 FBgn0031617 FBgn0031617 FBtr0300354 CG15635 protein_coding FLAG-S2-jox2017_R1_peak_1080 chrUextra 10087018 10087266 + 34 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_890 chr3R 18320643 18320782 + 34 NA Intergenic Intergenic 1981 FBgn0038979 FBgn0038979 FBtr0084259 CG7046 protein_coding FLAG-S2-jox2017_R1_peak_1342 chrX 1365744 1365889 + 34 NA promoter-TSS (FBgn0025383) protein_coding-promoter-TSS (FBgn0025383) -742 FBgn0025383 FBgn0025383 FBtr0070257 CG14780 protein_coding FLAG-S2-jox2017_R1_peak_356 chr2R 13349628 13349770 + 34 NA exon (FBgn0028953, exon 2 of 2) protein_coding-exon (FBgn0028953, exon 2 of 2) 1596 FBgn0028953 FBgn0028953 FBtr0086922 CG14478 protein_coding FLAG-S2-jox2017_R1_peak_1304 chrUextra 28901972 28902491 + 34 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_710 chr3R 992663 993016 + 34 NA intron (FBgn0037295, intron 3 of 4) protein_coding-intron (FBgn0037295, intron 4 of 5) 1810 FBgn0037295 FBgn0037295 FBtr0110950 dpr16 protein_coding FLAG-S2-jox2017_R1_peak_1115 chrUextra 15996413 15996647 + 33 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1458 chrX 19791518 19791683 + 33 NA intron (FBgn0052529, intron 1 of 5) protein_coding-intron (FBgn0052529, intron 4 of 8) -7507 FBgn0086782 FBgn0086782 FBtr0074802 amn protein_coding FLAG-S2-jox2017_R1_peak_1218 chrUextra 28422833 28423205 + 33 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_603 chr3L 15033586 15033725 + 33 NA intron (FBgn0261090, intron 2 of 7) protein_coding-intron (FBgn0261090, intron 2 of 7) 2015 FBgn0036465 FBgn0036465 FBtr0075669 Rpn12R protein_coding FLAG-S2-jox2017_R1_peak_457 chr3L 691363 691529 + 33 NA TTS (FBgn0260862) protein_coding-TTS (FBgn0260862) 929 FBgn0035155 FBgn0035155 FBtr0330078 RabX6 protein_coding FLAG-S2-jox2017_R1_peak_706 chr3R 814117 814256 + 33 NA intron (FBgn0037292, intron 2 of 3) protein_coding-intron (FBgn0037292, intron 2 of 3) -2344 FBgn0263343 FBgn0263343 FBtr0308777 CR43424 ncRNA FLAG-S2-jox2017_R1_peak_1062 chrUextra 7349492 7349631 + 33 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1317 chrUextra 28931942 28932199 + 33 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1445 chrX 18026584 18026723 + 33 NA exon (FBgn0017418, exon 8 of 8) protein_coding-exon (FBgn0017418, exon 8 of 8) -2442 FBgn0262607 FBgn0262607 FBtr0305281 CG43133 protein_coding FLAG-S2-jox2017_R1_peak_303 chr2R 7150693 7150840 + 33 NA Intergenic Intergenic -1471 FBgn0033601 FBgn0033601 FBtr0088188 Cpr47Ed protein_coding FLAG-S2-jox2017_R1_peak_986 chr3R 27215148 27215341 + 32 NA exon (FBgn0039844, exon 6 of 10) protein_coding-exon (FBgn0039844, exon 6 of 10) 4005 FBgn0051204 FBgn0051204 FBtr0085814 CG31204 protein_coding FLAG-S2-jox2017_R1_peak_613 chr3L 16312127 16312298 + 32 NA promoter-TSS (FBgn0036606) protein_coding-promoter-TSS (FBgn0036606) 414 FBgn0036605 FBgn0036605 FBtr0075432 CG13041 protein_coding FLAG-S2-jox2017_R1_peak_46 chr2L 5356974 5357113 + 32 NA exon (FBgn0016920, exon 8 of 13) protein_coding-exon (FBgn0016920, exon 8 of 13) -14694 FBgn0031703 FBgn0031703 FBtr0079077 CG12512 protein_coding FLAG-S2-jox2017_R1_peak_1201 chrUextra 28073646 28073882 + 32 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_142 chr2L 16049662 16049802 + 32 NA promoter-TSS (FBgn0013433) protein_coding-promoter-TSS (FBgn0013433) -263 FBgn0013433 FBgn0013433 FBtr0080806 beat-Ia protein_coding FLAG-S2-jox2017_R1_peak_1256 chrUextra 28725834 28726069 + 32 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_484 chr3L 2719135 2719280 + 32 NA TTS (FBgn0052296) protein_coding-TTS (FBgn0052296) -7517 FBgn0264606 FBgn0264606 FBtr0333631 CG43955 protein_coding FLAG-S2-jox2017_R1_peak_1200 chrUextra 28061026 28061470 + 32 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1232 chrUextra 28575352 28575834 + 32 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_951 chr3R 24223124 24223264 + 32 NA Intergenic Intergenic -20736 FBgn0039584 FBgn0039584 FBtr0085289 beat-VI protein_coding FLAG-S2-jox2017_R1_peak_1230 chrUextra 28556142 28556372 + 31 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1466 chrXHet 169392 169539 + 31 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_371 chr2R 14687946 14688122 + 31 NA intron (FBgn0010651, intron 1 of 3) protein_coding-intron (FBgn0010651, intron 2 of 4) 1870 FBgn0010651 FBgn0010651 FBtr0086635 l(2)08717 protein_coding FLAG-S2-jox2017_R1_peak_146 chr2L 16578926 16579065 + 31 NA intron (FBgn0259735, intron 2 of 4) protein_coding-intron (FBgn0259735, intron 2 of 2) -26950 FBgn0051815 FBgn0051815 FBtr0080870 CG31815 protein_coding FLAG-S2-jox2017_R1_peak_1231 chrUextra 28561345 28561486 + 31 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1326 chrUextra 28972876 28973113 + 31 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1055 chrUextra 6158241 6158480 + 31 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_964 chr3R 25737873 25738047 + 31 NA TTS (FBgn0039722) protein_coding-TTS (FBgn0039722) 2108 FBgn0039722 FBgn0039722 FBtr0085514 capa protein_coding FLAG-S2-jox2017_R1_peak_1392 chrX 8502335 8502485 + 31 NA Intergenic Intergenic -2075 FBgn0030054 FBgn0030054 FBtr0071228 Caf1-180 protein_coding FLAG-S2-jox2017_R1_peak_1134 chrUextra 21375670 21375905 + 31 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_240 chr2R 2950160 2950299 + 31 NA promoter-TSS (FBgn0027558) protein_coding-promoter-TSS (FBgn0027558) 842 FBgn0033138 FBgn0033138 FBtr0089060 Tsp42Eq protein_coding FLAG-S2-jox2017_R1_peak_910 chr3R 20525072 20525259 + 31 NA intron (FBgn0003429, intron 15 of 22) protein_coding-intron (FBgn0003429, intron 16 of 24) -15341 FBgn0039217 FBgn0039217 FBtr0084687 CG13627 protein_coding FLAG-S2-jox2017_R1_peak_1162 chrUextra 25862139 25862593 + 31 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_418 chr2R 18733889 18734032 + 31 NA exon (FBgn0034785, exon 2 of 4) protein_coding-exon (FBgn0034785, exon 2 of 4) 436 FBgn0034785 FBgn0034785 FBtr0303785 CG3649 protein_coding FLAG-S2-jox2017_R1_peak_143 chr2L 16323358 16323499 + 31 NA exon (FBgn0000250, exon 3 of 7) protein_coding-exon (FBgn0000250, exon 3 of 7) 2015 FBgn0000250 FBgn0000250 FBtr0080846 cact protein_coding FLAG-S2-jox2017_R1_peak_127 chr2L 13980951 13981090 + 31 NA exon (FBgn0028939, exon 2 of 3) protein_coding-exon (FBgn0028939, exon 2 of 3) 874 FBgn0028939 FBgn0028939 FBtr0080589 nimC2 protein_coding FLAG-S2-jox2017_R1_peak_1242 chrUextra 28630793 28631034 + 31 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1305 chrUextra 28905392 28905870 + 31 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_944 chr3R 23251833 23252041 + 31 NA intron (FBgn0016061, intron 1 of 17) protein_coding-intron (FBgn0016061, intron 1 of 16) 11267 FBgn0016061 FBgn0016061 FBtr0289998 side protein_coding FLAG-S2-jox2017_R1_peak_841 chr3R 14042677 14042822 + 31 NA exon (FBgn0038581, exon 4 of 5) protein_coding-exon (FBgn0038581, exon 4 of 5) 893 FBgn0038581 FBgn0038581 FBtr0083560 CG14314 protein_coding FLAG-S2-jox2017_R1_peak_78 chr2L 8943963 8944109 + 31 NA promoter-TSS (FBgn0032077) protein_coding-promoter-TSS (FBgn0032077) -772 FBgn0032076 FBgn0032076 FBtr0100481 CG9510 protein_coding FLAG-S2-jox2017_R1_peak_288 chr2R 5929099 5929257 + 30 NA exon (FBgn0085249, exon 2 of 2) protein_coding-exon (FBgn0085249, exon 2 of 2) 1817 FBgn0085249 FBgn0085249 FBtr0112413 CG34220 protein_coding FLAG-S2-jox2017_R1_peak_208 chr2L 22699949 22700236 + 30 NA Intergenic Intergenic -9084 FBgn0058439 FBgn0058439 FBtr0111233 CG40439 protein_coding FLAG-S2-jox2017_R1_peak_783 chr3R 8889766 8890206 + 30 NA intron (FBgn0004666, intron 1 of 7) protein_coding-intron (FBgn0004666, intron 1 of 7) 6505 FBgn0004666 FBgn0004666 FBtr0082710 sim protein_coding FLAG-S2-jox2017_R1_peak_859 chr3R 15474474 15474647 + 30 NA promoter-TSS (FBgn0038723) protein_coding-promoter-TSS (FBgn0038723) -336 FBgn0038723 FBgn0038723 FBtr0083803 CG6195 protein_coding FLAG-S2-jox2017_R1_peak_1204 chrUextra 28213732 28213977 + 30 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_460 chr3L 1227831 1227970 + 30 NA exon (FBgn0004430, exon 1 of 1) protein_coding-exon (FBgn0004430, exon 1 of 1) 153 FBgn0004430 FBgn0004430 FBtr0072631 LysS protein_coding FLAG-S2-jox2017_R1_peak_1052 chrUextra 5828711 5828983 + 30 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_535 chr3L 8343799 8343941 + 30 NA exon (FBgn0035879, exon 6 of 7) protein_coding-exon (FBgn0035879, exon 6 of 7) 3436 FBgn0263553 FBgn0263553 FBtr0309680 mir-4913 pre_miRNA FLAG-S2-jox2017_R1_peak_575 chr3L 12203601 12203775 + 30 NA exon (FBgn0260941, exon 11 of 11) protein_coding-exon (FBgn0260941, exon 11 of 11) 3862 FBgn0260941 FBgn0260941 FBtr0301053 app protein_coding FLAG-S2-jox2017_R1_peak_877 chr3R 16993940 16994100 + 30 NA promoter-TSS (FBgn0260004) protein_coding-promoter-TSS (FBgn0260004) -93 FBgn0260004 FBgn0260004 FBtr0084027 Snmp1 protein_coding FLAG-S2-jox2017_R1_peak_471 chr3L 1945231 1945380 + 30 NA exon (FBgn0002872, exon 6 of 12) protein_coding-exon (FBgn0002872, exon 6 of 12) 2170 FBgn0002872 FBgn0002872 FBtr0301465 mu2 protein_coding FLAG-S2-jox2017_R1_peak_178 chr2L 19398867 19399140 + 30 NA promoter-TSS (FBgn0032775) protein_coding-promoter-TSS (FBgn0032775) -511 FBgn0032775 FBgn0032775 FBtr0300822 CG17544 protein_coding FLAG-S2-jox2017_R1_peak_1186 chrUextra 27712105 27712331 + 30 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1371 chrX 5411057 5411292 + 30 NA promoter-TSS (FBgn0029771) protein_coding-promoter-TSS (FBgn0029771) -120 FBgn0029771 FBgn0029771 FBtr0070780 CG12730 protein_coding FLAG-S2-jox2017_R1_peak_1291 chrUextra 28854854 28855118 + 29 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_112 chr2L 13285296 13285468 + 29 NA exon (FBgn0028406, exon 3 of 3) protein_coding-exon (FBgn0028406, exon 3 of 3) 1027 FBgn0028406 FBgn0028406 FBtr0080478 Drep-4 protein_coding FLAG-S2-jox2017_R1_peak_1273 chrUextra 28795688 28795924 + 29 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_928 chr3R 22099333 22099531 + 29 NA intron (FBgn0039420, intron 7 of 7) protein_coding-intron (FBgn0039420, intron 7 of 7) 11048 FBgn0039420 FBgn0039420 FBtr0300398 CG6154 protein_coding FLAG-S2-jox2017_R1_peak_1188 chrUextra 27809221 27809459 + 29 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1399 chrX 10068915 10069082 + 29 NA intron (FBgn0264503, intron 1 of 3) protein_coding-intron (FBgn0264503, intron 1 of 3) 16531 FBgn0264503 FBgn0264503 FBtr0332934 CG43902 protein_coding FLAG-S2-jox2017_R1_peak_57 chr2L 6345355 6345560 + 29 NA TTS (FBgn0031800) protein_coding-TTS (FBgn0031800) 2970 FBgn0031800 FBgn0031800 FBtr0079283 CG9497 protein_coding FLAG-S2-jox2017_R1_peak_504 chr3L 4550873 4551066 + 29 NA intron (FBgn0035558, intron 1 of 2) protein_coding-intron (FBgn0035558, intron 2 of 3) 4267 FBgn0053777 FBgn0053777 FBtr0091778 CG33777 protein_coding FLAG-S2-jox2017_R1_peak_201 chr2L 21828125 21828551 + 29 NA promoter-TSS (FBgn0003866) protein_coding-promoter-TSS (FBgn0003866) -255 FBgn0003866 FBgn0003866 FBtr0085906 tsh protein_coding FLAG-S2-jox2017_R1_peak_906 chr3R 20126787 20126926 + 29 NA intron (FBgn0259685, intron 1 of 13) protein_coding-intron (FBgn0259685, intron 1 of 12) 6056 FBgn0259685 FBgn0259685 FBtr0304726 crb protein_coding FLAG-S2-jox2017_R1_peak_495 chr3L 3418399 3418588 + 29 NA promoter-TSS (FBgn0014388) protein_coding-promoter-TSS (FBgn0014388) -566 FBgn0014388 FBgn0014388 FBtr0073146 sty protein_coding FLAG-S2-jox2017_R1_peak_1307 chrUextra 28910070 28910388 + 29 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_229 chr2R 2077675 2077815 + 29 NA promoter-TSS (FBgn0011934) tRNA-promoter-TSS (FBgn0011934) -38 FBgn0011935 FBgn0011935 FBtr0086004 tRNA:N5:42Ae tRNA FLAG-S2-jox2017_R1_peak_1418 chrX 12782491 12782669 + 29 NA intron (FBgn0259171, intron 1 of 9) protein_coding-intron (FBgn0259171, intron 1 of 9) 8284 FBgn0259171 FBgn0259171 FBtr0333524 Pde9 protein_coding FLAG-S2-jox2017_R1_peak_1446 chrX 18095623 18095812 + 29 NA exon (FBgn0083228, exon 8 of 8) protein_coding-exon (FBgn0083228, exon 8 of 8) 3460 FBgn0030899 FBgn0030899 FBtr0074590 Her protein_coding FLAG-S2-jox2017_R1_peak_1243 chrUextra 28632199 28632469 + 29 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_459 chr3L 934095 934242 + 28 NA intron (FBgn0264574, intron 2 of 14) protein_coding-intron (FBgn0264574, intron 2 of 12) 25056 FBgn0028999 FBgn0028999 FBtr0072592 nerfin-1 protein_coding FLAG-S2-jox2017_R1_peak_1417 chrX 12648129 12648280 + 28 NA Intergenic Intergenic 6446 FBgn0020513 FBgn0020513 FBtr0073705 ade5 protein_coding FLAG-S2-jox2017_R1_peak_124 chr2L 13847976 13848118 + 28 NA TTS (FBgn0028534) protein_coding-TTS (FBgn0028534) 107 FBgn0028533 FBgn0028533 FBtr0080550 CG7953 protein_coding FLAG-S2-jox2017_R1_peak_1247 chrUextra 28658865 28659148 + 28 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_347 chr2R 11716017 11716156 + 28 NA intron (FBgn0003130, intron 4 of 4) protein_coding-intron (FBgn0003130, intron 4 of 4) 6474 FBgn0003130 FBgn0003130 FBtr0087311 Poxn protein_coding FLAG-S2-jox2017_R1_peak_1350 chrX 2990274 2990419 + 28 NA intron (FBgn0028369, intron 5 of 10) protein_coding-intron (FBgn0028369, intron 7 of 12) -28831 FBgn0029649 FBgn0029649 FBtr0332494 CG4116 protein_coding FLAG-S2-jox2017_R1_peak_641 chr3L 19133499 19133725 + 28 NA TTS (FBgn0016797) protein_coding-TTS (FBgn0016797) -1537 FBgn0036851 FBgn0036851 FBtr0330092 CG14082 protein_coding FLAG-S2-jox2017_R1_peak_1079 chrUextra 9985925 9986444 + 28 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_998 chr3RHet 976138 976277 + 28 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1455 chrX 19688283 19688422 + 28 NA Intergenic Intergenic -10670 FBgn0259789 FBgn0259789 FBtr0307536 vfl protein_coding FLAG-S2-jox2017_R1_peak_273 chr2R 4884486 4884647 + 28 NA exon (FBgn0085379, exon 4 of 9) protein_coding-exon (FBgn0085379, exon 4 of 9) 9526 FBgn0085379 FBgn0085379 FBtr0112560 CG34350 protein_coding FLAG-S2-jox2017_R1_peak_1051 chrUextra 5408956 5409186 + 28 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1246 chrUextra 28654679 28655218 + 28 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1110 chrUextra 15163982 15164211 + 28 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1185 chrUextra 27709547 27709686 + 28 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_579 chr3L 12806196 12806335 + 28 NA TTS (FBgn0262714) protein_coding-TTS (FBgn0262714) 854 FBgn0036314 FBgn0036314 FBtr0075944 CG10754 protein_coding FLAG-S2-jox2017_R1_peak_1060 chrUextra 7299016 7299243 + 28 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_617 chr3L 16683235 16683419 + 28 NA intron (FBgn0264605, intron 2 of 5) protein_coding-intron (FBgn0063485, intron 2 of 6) -14746 FBgn0036654 FBgn0036654 FBtr0075317 CG9692 protein_coding FLAG-S2-jox2017_R1_peak_147 chr2L 16780526 16780665 + 28 NA exon (FBgn0264695, exon 12 of 18) protein_coding-exon (FBgn0264695, exon 12 of 18) 10126 FBgn0000406 FBgn0000406 FBtr0080932 Cyt-b5-r protein_coding FLAG-S2-jox2017_R1_peak_1151 chrUextra 24380539 24380778 + 28 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_161 chr2L 18183111 18183510 + 28 NA exon (FBgn0032673, exon 2 of 2) protein_coding-exon (FBgn0032673, exon 2 of 2) 1320 FBgn0032673 FBgn0032673 FBtr0081061 CG7180 protein_coding FLAG-S2-jox2017_R1_peak_1170 chrUextra 26731168 26731399 + 28 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_406 chr2R 17525592 17525731 + 28 NA exon (FBgn0034643, exon 2 of 2) protein_coding-exon (FBgn0034643, exon 2 of 2) 3488 FBgn0034643 FBgn0034643 FBtr0330228 CG10321 protein_coding FLAG-S2-jox2017_R1_peak_359 chr2R 13650336 13650475 + 28 NA exon (FBgn0027572, exon 4 of 8) protein_coding-exon (FBgn0027572, exon 4 of 8) 1967 FBgn0027572 FBgn0027572 FBtr0089548 CG5009 protein_coding FLAG-S2-jox2017_R1_peak_1311 chrUextra 28917647 28917878 + 27 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_170 chr2L 18859226 18859371 + 27 NA promoter-TSS (FBgn0032720) protein_coding-promoter-TSS (FBgn0032720) -52 FBgn0032720 FBgn0032720 FBtr0089318 mRpL13 protein_coding FLAG-S2-jox2017_R1_peak_1117 chrUextra 16605478 16605711 + 27 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1105 chrUextra 14099529 14099668 + 27 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1098 chrUextra 13275142 13275409 + 27 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_887 chr3R 18180634 18180785 + 27 NA intron (FBgn0038946, intron 4 of 5) protein_coding-intron (FBgn0038946, intron 3 of 4) -1698 FBgn0038947 FBgn0038947 FBtr0084209 sar1 protein_coding FLAG-S2-jox2017_R1_peak_35 chr2L 4557569 4557811 + 27 NA exon (FBgn0053196, exon 8 of 47) protein_coding-exon (FBgn0053196, exon 8 of 47) 20511 FBgn0031613 FBgn0031613 FBtr0077444 HP6 protein_coding FLAG-S2-jox2017_R1_peak_647 chr3L 19600083 19600222 + 27 NA promoter-TSS (FBgn0020277) protein_coding-promoter-TSS (FBgn0020277) 844 FBgn0036891 FBgn0036891 FBtr0074945 CG9372 protein_coding FLAG-S2-jox2017_R1_peak_1089 chrUextra 11405007 11405157 + 27 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_482 chr3L 2531388 2531660 + 27 NA intron (FBgn0010905, intron 3 of 16) protein_coding-intron (FBgn0010905, intron 3 of 15) -4551 FBgn0260480 FBgn0260480 FBtr0072962 CG32295 protein_coding FLAG-S2-jox2017_R1_peak_566 chr3L 11505789 11505946 + 27 NA promoter-TSS (FBgn0036168) protein_coding-promoter-TSS (FBgn0036168) 546 FBgn0003373 FBgn0003373 FBtr0076096 Sgs3 protein_coding FLAG-S2-jox2017_R1_peak_1279 chrUextra 28820079 28820400 + 27 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1130 chrUextra 19475287 19475527 + 27 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_83 chr2L 9568397 9568536 + 27 NA promoter-TSS (FBgn0032130) protein_coding-promoter-TSS (FBgn0032130) -1851 FBgn0032130 FBgn0032130 FBtr0079835 CG3838 protein_coding FLAG-S2-jox2017_R1_peak_378 chr2R 15366136 15366317 + 27 NA intron (FBgn0260934, intron 12 of 15) protein_coding-intron (FBgn0260934, intron 12 of 15) 8116 FBgn0034451 FBgn0034451 FBtr0086502 CG11242 protein_coding FLAG-S2-jox2017_R1_peak_952 chr3R 24329771 24329934 + 27 NA intron (FBgn0013813, intron 25 of 45) protein_coding-intron (FBgn0013813, intron 26 of 46) 16385 FBgn0051051 FBgn0051051 FBtr0085296 CG31051 protein_coding FLAG-S2-jox2017_R1_peak_574 chr3L 12054781 12054923 + 27 NA exon (FBgn0041096, exon 2 of 8) protein_coding-exon (FBgn0041096, exon 2 of 8) 3107 FBgn0041096 FBgn0041096 FBtr0334109 rols protein_coding FLAG-S2-jox2017_R1_peak_1022 chrU 2307904 2308059 + 27 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_810 chr3R 11165449 11165588 + 27 NA promoter-TSS (FBgn0021750) protein_coding-promoter-TSS (FBgn0021750) -889 FBgn0021750 FBgn0021750 FBtr0083086 Aats-ser protein_coding FLAG-S2-jox2017_R1_peak_1101 chrUextra 13534003 13534236 + 27 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1283 chrUextra 28831332 28831636 + 27 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1202 chrUextra 28090470 28090746 + 26 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_355 chr2R 13319704 13319847 + 26 NA TTS (FBgn0034217) protein_coding-TTS (FBgn0034217) 1230 FBgn0034217 FBgn0034217 FBtr0086917 Lhr protein_coding FLAG-S2-jox2017_R1_peak_310 chr2R 7733749 7733895 + 26 NA intron (FBgn0033657, intron 1 of 5) protein_coding-intron (FBgn0033657, intron 1 of 5) 991 FBgn0033657 FBgn0033657 FBtr0088032 Sln protein_coding FLAG-S2-jox2017_R1_peak_827 chr3R 12546412 12546552 + 26 NA intron (FBgn0003944, intron 1 of 2) protein_coding-intron (FBgn0003944, intron 1 of 2) 13866 FBgn0003944 FBgn0003944 FBtr0083350 Ubx protein_coding FLAG-S2-jox2017_R1_peak_1221 chrUextra 28477460 28477734 + 26 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_942 chr3R 23195022 23195228 + 26 NA exon (FBgn0260487, exon 5 of 7) protein_coding-exon (FBgn0260487, exon 5 of 7) 462 FBgn0263453 FBgn0263453 FBtr0309308 CR43476 ncRNA FLAG-S2-jox2017_R1_peak_509 chr3L 5534855 5534994 + 26 NA intron (FBgn0035612, intron 2 of 7) protein_coding-intron (FBgn0035612, intron 3 of 9) -6065 FBgn0035611 FBgn0035611 FBtr0077141 CG13285 protein_coding FLAG-S2-jox2017_R1_peak_759 chr3R 5610146 5610428 + 26 NA promoter-TSS (FBgn0037754) protein_coding-promoter-TSS (FBgn0037754) -121 FBgn0037754 FBgn0037754 FBtr0082139 CG8500 protein_coding FLAG-S2-jox2017_R1_peak_1312 chrUextra 28918591 28918813 + 26 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_691 chr3R 120925 121096 + 26 NA promoter-TSS (FBgn0037230) protein_coding-promoter-TSS (FBgn0037230) -132 FBgn0262214 FBgn0262214 FBtr0304265 mir-929 pre_miRNA FLAG-S2-jox2017_R1_peak_1048 chrUextra 4335687 4335826 + 26 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_564 chr3L 11018325 11018464 + 26 NA promoter-TSS (FBgn0052079) protein_coding-promoter-TSS (FBgn0052079) -267 FBgn0052079 FBgn0052079 FBtr0300188 CG32079 protein_coding FLAG-S2-jox2017_R1_peak_1320 chrUextra 28939105 28939351 + 26 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_839 chr3R 13956276 13956707 + 26 NA exon (FBgn0003499, exon 5 of 5) protein_coding-exon (FBgn0003499, exon 5 of 5) -21351 FBgn0038567 FBgn0038567 FBtr0083546 CG14316 protein_coding FLAG-S2-jox2017_R1_peak_47 chr2L 5403617 5403756 + 26 NA promoter-TSS (FBgn0016660) protein_coding-promoter-TSS (FBgn0016660) -656 FBgn0016660 FBgn0016660 FBtr0079076 H15 protein_coding FLAG-S2-jox2017_R1_peak_190 chr2L 20348965 20349149 + 26 NA TTS (FBgn0003475) protein_coding-TTS (FBgn0003475) 953 FBgn0011638 FBgn0011638 FBtr0081374 La protein_coding FLAG-S2-jox2017_R1_peak_1104 chrUextra 13789805 13790049 + 26 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_56 chr2L 6249447 6249619 + 26 NA Intergenic Intergenic -3590 FBgn0053531 FBgn0053531 FBtr0301305 Ddr protein_coding FLAG-S2-jox2017_R1_peak_1045 chrUextra 3212350 3212599 + 26 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_974 chr3R 26591349 26591504 + 26 NA promoter-TSS (FBgn0004606) protein_coding-promoter-TSS (FBgn0004606) -222 FBgn0004606 FBgn0004606 FBtr0085702 zfh1 protein_coding FLAG-S2-jox2017_R1_peak_1077 chrUextra 9654589 9654817 + 26 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1407 chrX 10709659 10709820 + 26 NA promoter-TSS (FBgn0262735) protein_coding-promoter-TSS (FBgn0262735) -1613 FBgn0262735 FBgn0262735 FBtr0073419 Imp protein_coding FLAG-S2-jox2017_R1_peak_34 chr2L 4507168 4507675 + 25 NA exon (FBgn0053196, exon 52 of 82) protein_coding-exon (FBgn0053196, exon 52 of 82) -30397 FBgn0011603 FBgn0011603 FBtr0301408 ine protein_coding FLAG-S2-jox2017_R1_peak_297 chr2R 6451854 6452196 + 25 NA intron (FBgn0263102, intron 3 of 10) protein_coding-intron (FBgn0263102, intron 3 of 9) 6632 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding FLAG-S2-jox2017_R1_peak_91 chr2L 10423805 10423944 + 25 NA exon (FBgn0032246, exon 2 of 6) protein_coding-exon (FBgn0032246, exon 2 of 6) 583 FBgn0032246 FBgn0032246 FBtr0080020 CG5168 protein_coding FLAG-S2-jox2017_R1_peak_1226 chrUextra 28542906 28543045 + 25 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_130 chr2L 14558097 14558236 + 25 NA Intergenic Intergenic 5560 FBgn0028913 FBgn0028913 FBtr0080661 CG3473 protein_coding FLAG-S2-jox2017_R1_peak_153 chr2L 17264534 17264673 + 25 NA Intergenic Intergenic -3871 FBgn0032629 FBgn0032629 FBtr0080972 beat-IIIc protein_coding FLAG-S2-jox2017_R1_peak_1067 chrUextra 8366539 8366770 + 25 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_764 chr3R 6044322 6044461 + 25 NA exon (FBgn0004575, exon 12 of 13) protein_coding-exon (FBgn0004575, exon 12 of 13) -4029 FBgn0037797 FBgn0037797 FBtr0082222 CG12420 protein_coding FLAG-S2-jox2017_R1_peak_275 chr2R 4974796 4974973 + 25 NA promoter-TSS (FBgn0010220) protein_coding-promoter-TSS (FBgn0010220) 414 FBgn0033372 FBgn0033372 FBtr0310148 CG13742 protein_coding FLAG-S2-jox2017_R1_peak_543 chr3L 8886213 8886352 + 25 NA exon (FBgn0020633, exon 4 of 5) protein_coding-exon (FBgn0020633, exon 4 of 5) 1586 FBgn0020633 FBgn0020633 FBtr0076585 Mcm7 protein_coding FLAG-S2-jox2017_R1_peak_1431 chrX 15487126 15487288 + 25 NA Intergenic Intergenic -2246 FBgn0030662 FBgn0030662 FBtr0074064 CG9220 protein_coding FLAG-S2-jox2017_R1_peak_1064 chrUextra 7598782 7599020 + 25 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_432 chr2R 19935614 19935766 + 25 NA exon (FBgn0028552, exon 4 of 7) protein_coding-exon (FBgn0028552, exon 4 of 7) 722 FBgn0028552 FBgn0028552 FBtr0072187 gammaSnap protein_coding FLAG-S2-jox2017_R1_peak_1190 chrUextra 27873004 27873621 + 25 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1453 chrX 19329241 19329468 + 25 NA intron (FBgn0031016, intron 3 of 4) protein_coding-intron (FBgn0031016, intron 3 of 5) -39806 FBgn0031018 FBgn0031018 FBtr0074710 CG12200 protein_coding FLAG-S2-jox2017_R1_peak_1111 chrUextra 15293091 15293317 + 25 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_282 chr2R 5689570 5689714 + 25 NA intron (FBgn0027589, intron 1 of 8) protein_coding-intron (FBgn0027589, intron 1 of 8) 4728 FBgn0027589 FBgn0027589 FBtr0088495 CG1688 protein_coding FLAG-S2-jox2017_R1_peak_551 chr3L 9671340 9671556 + 25 NA promoter-TSS (FBgn0036028) protein_coding-promoter-TSS (FBgn0036028) 755 FBgn0016081 FBgn0016081 FBtr0333858 fry protein_coding FLAG-S2-jox2017_R1_peak_1440 chrX 16773806 16773947 + 25 NA Intergenic Intergenic -1504 FBgn0030799 FBgn0030799 FBtr0074339 CG4872 protein_coding FLAG-S2-jox2017_R1_peak_358 chr2R 13639562 13639834 + 25 NA exon (FBgn0034275, exon 6 of 9) protein_coding-exon (FBgn0034275, exon 6 of 9) 1895 FBgn0034275 FBgn0034275 FBtr0089546 CG5002 protein_coding FLAG-S2-jox2017_R1_peak_255 chr2R 3622713 3623064 + 25 NA exon (FBgn0042135, exon 1 of 13) protein_coding-exon (FBgn0042135, exon 1 of 13) 236 FBgn0042135 FBgn0042135 FBtr0330328 CG18812 protein_coding FLAG-S2-jox2017_R1_peak_417 chr2R 18589193 18589353 + 25 NA promoter-TSS (FBgn0034766) protein_coding-promoter-TSS (FBgn0034766) -949 FBgn0034766 FBgn0034766 FBtr0071870 Obp59a protein_coding FLAG-S2-jox2017_R1_peak_1257 chrUextra 28731979 28732639 + 25 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_491 chr3L 3173574 3173713 + 25 NA exon (FBgn0035410, exon 4 of 4) protein_coding-exon (FBgn0035410, exon 4 of 4) -1098 FBgn0035409 FBgn0035409 FBtr0073111 CG14963 protein_coding FLAG-S2-jox2017_R1_peak_670 chr3L 21727518 21727657 + 25 NA promoter-TSS (FBgn0037124) protein_coding-promoter-TSS (FBgn0037124) 388 FBgn0037125 FBgn0037125 FBtr0078433 CG14573 protein_coding FLAG-S2-jox2017_R1_peak_1050 chrUextra 5350256 5350488 + 25 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1310 chrUextra 28915649 28915881 + 24 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1313 chrUextra 28922254 28922423 + 24 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_7 chr2L 879603 879753 + 24 NA exon (FBgn0031292, exon 13 of 15) protein_coding-exon (FBgn0031292, exon 13 of 15) 2376 FBgn0002936 FBgn0002936 FBtr0078023 ninaA protein_coding FLAG-S2-jox2017_R1_peak_977 chr3R 26683182 26683321 + 24 NA Intergenic Intergenic 5214 FBgn0003720 FBgn0003720 FBtr0085709 tll protein_coding FLAG-S2-jox2017_R1_peak_1441 chrX 16807384 16807540 + 24 NA exon (FBgn0027556, exon 1 of 6) protein_coding-exon (FBgn0027556, exon 1 of 6) -11731 FBgn0027556 FBgn0027556 FBtr0074345 CG4928 protein_coding FLAG-S2-jox2017_R1_peak_1406 chrX 10645537 10645681 + 24 NA exon (FBgn0030230, exon 3 of 5) protein_coding-exon (FBgn0030230, exon 3 of 5) 6090 FBgn0030230 FBgn0030230 FBtr0332296 Rph protein_coding FLAG-S2-jox2017_R1_peak_1315 chrUextra 28928600 28928824 + 24 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_194 chr2L 20736728 20736889 + 24 NA exon (FBgn0262743, exon 4 of 7) protein_coding-exon (FBgn0262743, exon 4 of 7) 1893 FBgn0262743 FBgn0262743 FBtr0081392 Fs(2)Ket protein_coding FLAG-S2-jox2017_R1_peak_1288 chrUextra 28848570 28848735 + 24 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_429 chr2R 19852554 19852693 + 24 NA TTS (FBgn0034943) protein_coding-TTS (FBgn0034943) 333 FBgn0020764 FBgn0020764 FBtr0072151 Alas protein_coding FLAG-S2-jox2017_R1_peak_393 chr2R 16765080 16765219 + 24 NA exon (FBgn0050295, exon 9 of 9) protein_coding-exon (FBgn0050295, exon 9 of 9) -2286 FBgn0034558 FBgn0034558 FBtr0304717 CG9236 protein_coding FLAG-S2-jox2017_R1_peak_33 chr2L 4482102 4482244 + 24 NA exon (FBgn0053196, exon 45 of 47) protein_coding-exon (FBgn0053196, exon 45 of 47) -5149 FBgn0011603 FBgn0011603 FBtr0301408 ine protein_coding FLAG-S2-jox2017_R1_peak_1109 chrUextra 14417506 14417729 + 24 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_874 chr3R 16888642 16888781 + 24 NA exon (FBgn0025865, exon 4 of 4) protein_coding-exon (FBgn0025865, exon 4 of 4) 1482 FBgn0025865 FBgn0025865 FBtr0306347 Cortactin protein_coding FLAG-S2-jox2017_R1_peak_6 chr2L 863657 863796 + 24 NA exon (FBgn0029095, exon 4 of 6) protein_coding-exon (FBgn0029095, exon 4 of 6) 1767 FBgn0086031 FBgn0086031 FBtr0114307 snoRNA:Me28S-U1230 snoRNA FLAG-S2-jox2017_R1_peak_1353 chrX 3637343 3637544 + 24 NA intron (FBgn0086899, intron 1 of 7) protein_coding-intron (FBgn0086899, intron 1 of 7) -23778 FBgn0015286 FBgn0015286 FBtr0070584 Rala protein_coding FLAG-S2-jox2017_R1_peak_1349 chrX 2953839 2953982 + 24 NA intron (FBgn0028369, intron 6 of 10) protein_coding-intron (FBgn0028369, intron 6 of 12) 7605 FBgn0029649 FBgn0029649 FBtr0332494 CG4116 protein_coding FLAG-S2-jox2017_R1_peak_489 chr3L 3043667 3043898 + 24 NA TTS (FBgn0035390) protein_coding-TTS (FBgn0035390) 1061 FBgn0040308 FBgn0040308 FBtr0332112 Jafrac2 protein_coding FLAG-S2-jox2017_R1_peak_156 chr2L 17991058 17991249 + 24 NA exon (FBgn0051742, exon 1 of 1) protein_coding-exon (FBgn0051742, exon 1 of 1) 735 FBgn0051742 FBgn0051742 FBtr0081025 CG31742 protein_coding FLAG-S2-jox2017_R1_peak_766 chr3R 6216923 6217072 + 24 NA intron (FBgn0259938, intron 1 of 2) protein_coding-intron (FBgn0259938, intron 1 of 3) 3012 FBgn0259938 FBgn0259938 FBtr0305152 cwo protein_coding FLAG-S2-jox2017_R1_peak_956 chr3R 24522249 24522399 + 24 NA TTS (FBgn0039594) protein_coding-TTS (FBgn0039594) 360 FBgn0027655 FBgn0027655 FBtr0085310 htt protein_coding FLAG-S2-jox2017_R1_peak_398 chr2R 16898286 16898429 + 24 NA intron (FBgn0001133, intron 2 of 4) protein_coding-intron (FBgn0001133, intron 2 of 4) 1067 FBgn0001133 FBgn0001133 FBtr0071548 grau protein_coding FLAG-S2-jox2017_R1_peak_821 chr3R 11933176 11933315 + 24 NA Intergenic Intergenic 8307 FBgn0010379 FBgn0010379 FBtr0083228 Akt1 protein_coding FLAG-S2-jox2017_R1_peak_1270 chrUextra 28771248 28771481 + 24 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1433 chrX 15965097 15965310 + 24 NA TTS (FBgn0030723) protein_coding-TTS (FBgn0030723) 2331 FBgn0030724 FBgn0030724 FBtr0310318 Nipsnap protein_coding FLAG-S2-jox2017_R1_peak_41 chr2L 4966959 4967098 + 24 NA TTS (FBgn0262467) protein_coding-TTS (FBgn0262467) 747 FBgn0015834 FBgn0015834 FBtr0079053 Trip1 protein_coding FLAG-S2-jox2017_R1_peak_1161 chrUextra 25753550 25753777 + 24 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1179 chrUextra 27397739 27397976 + 24 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1214 chrUextra 28348980 28349475 + 24 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_553 chr3L 10115133 10115276 + 24 NA intron (FBgn0040823, intron 6 of 6) protein_coding-intron (FBgn0040823, intron 6 of 6) -21223 FBgn0262008 FBgn0262008 FBtr0303832 CG42826 protein_coding FLAG-S2-jox2017_R1_peak_250 chr2R 3414787 3414926 + 24 NA exon (FBgn0033188, exon 2 of 3) protein_coding-exon (FBgn0033188, exon 2 of 3) -1643 FBgn0022772 FBgn0022772 FBtr0088959 Orc1 protein_coding FLAG-S2-jox2017_R1_peak_467 chr3L 1719340 1719570 + 24 NA exon (FBgn0027594, exon 6 of 11) protein_coding-exon (FBgn0027594, exon 6 of 11) 3698 FBgn0035262 FBgn0035262 FBtr0072800 CG18171 protein_coding FLAG-S2-jox2017_R1_peak_1165 chrUextra 26185770 26186177 + 24 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1450 chrX 19053080 19053311 + 24 NA promoter-TSS (FBgn0261461) protein_coding-promoter-TSS (FBgn0261461) 10060 FBgn0263571 FBgn0263571 FBtr0309726 mir-4959 pre_miRNA FLAG-S2-jox2017_R1_peak_408 chr2R 17731099 17731238 + 24 NA promoter-TSS (FBgn0050407) tRNA-promoter-TSS (FBgn0050407) -495 FBgn0050407 FBgn0050407 FBtr0071737 tRNA:CR30407 tRNA FLAG-S2-jox2017_R1_peak_1334 chrUextra 28997203 28997439 + 24 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1194 chrUextra 27958695 27958931 + 24 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1160 chrUextra 25742583 25742806 + 24 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_925 chr3R 21978120 21978259 + 24 NA Intergenic Intergenic -18382 FBgn0051323 FBgn0051323 FBtr0307339 CG31323 protein_coding FLAG-S2-jox2017_R1_peak_200 chr2L 21645645 21645792 + 23 NA intron (FBgn0023416, intron 18 of 18) protein_coding-intron (FBgn0023416, intron 18 of 18) -11838 FBgn0262620 FBgn0262620 FBtr0305481 CG43144 protein_coding FLAG-S2-jox2017_R1_peak_373 chr2R 15016300 15016439 + 23 NA promoter-TSS (FBgn0027535) protein_coding-promoter-TSS (FBgn0027535) -730 FBgn0027535 FBgn0027535 FBtr0086579 botv protein_coding FLAG-S2-jox2017_R1_peak_958 chr3R 25062800 25063024 + 23 NA exon (FBgn0039656, exon 4 of 7) protein_coding-exon (FBgn0039656, exon 4 of 7) 1514 FBgn0039656 FBgn0039656 FBtr0085403 CG11951 protein_coding FLAG-S2-jox2017_R1_peak_3 chr2L 333073 333212 + 23 NA promoter-TSS (FBgn0051921) protein_coding-promoter-TSS (FBgn0051921) -807 FBgn0051921 FBgn0051921 FBtr0078096 CG31921 protein_coding FLAG-S2-jox2017_R1_peak_878 chr3R 17195230 17195423 + 23 NA TTS (FBgn0002781) protein_coding-TTS (FBgn0002781) 142 FBgn0261845 FBgn0261845 FBtr0303410 pre-mod(mdg4)-U protein_coding FLAG-S2-jox2017_R1_peak_621 chr3L 16913932 16914071 + 23 NA exon (FBgn0261565, exon 3 of 5) protein_coding-exon (FBgn0261565, exon 3 of 5) -2351 FBgn0036676 FBgn0036676 FBtr0075261 CG13028 protein_coding FLAG-S2-jox2017_R1_peak_1132 chrUextra 20210086 20210323 + 23 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1297 chrUextra 28879596 28880038 + 23 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_290 chr2R 5930332 5930574 + 23 NA exon (FBgn0085249, exon 2 of 2) protein_coding-exon (FBgn0085249, exon 2 of 2) 542 FBgn0085249 FBgn0085249 FBtr0112413 CG34220 protein_coding FLAG-S2-jox2017_R1_peak_573 chr3L 12002313 12002461 + 23 NA exon (FBgn0041096, exon 7 of 8) protein_coding-exon (FBgn0041096, exon 7 of 8) 6132 FBgn0036240 FBgn0036240 FBtr0332709 CG6928 protein_coding FLAG-S2-jox2017_R1_peak_1065 chrUextra 8132061 8132288 + 23 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_867 chr3R 16035028 16035167 + 23 NA exon (FBgn0038775, exon 1 of 1) protein_coding-exon (FBgn0038775, exon 1 of 1) 416 FBgn0038775 FBgn0038775 FBtr0083874 CG17199 protein_coding FLAG-S2-jox2017_R1_peak_344 chr2R 11244585 11244776 + 23 NA exon (FBgn0034013, exon 2 of 10) protein_coding-exon (FBgn0034013, exon 2 of 10) 7021 FBgn0034013 FBgn0034013 FBtr0087382 unc-5 protein_coding FLAG-S2-jox2017_R1_peak_510 chr3L 5599092 5599258 + 23 NA exon (FBgn0035623, exon 4 of 7) protein_coding-exon (FBgn0035623, exon 4 of 7) 1285 FBgn0035623 FBgn0035623 FBtr0077088 mthl2 protein_coding FLAG-S2-jox2017_R1_peak_380 chr2R 15573218 15573357 + 23 NA exon (FBgn0034467, exon 7 of 7) protein_coding-exon (FBgn0034467, exon 7 of 7) 2296 FBgn0034467 FBgn0034467 FBtr0086481 CG15128 protein_coding FLAG-S2-jox2017_R1_peak_427 chr2R 19799310 19799502 + 23 NA intron (FBgn0261794, intron 3 of 20) protein_coding-intron (FBgn0261794, intron 3 of 19) 1357 FBgn0261794 FBgn0261794 FBtr0072139 kcc protein_coding FLAG-S2-jox2017_R1_peak_895 chr3R 19001113 19001325 + 23 NA intron (FBgn0039061, intron 1 of 3) protein_coding-intron (FBgn0039061, intron 1 of 3) 1624 FBgn0039061 FBgn0039061 FBtr0301382 Ir protein_coding FLAG-S2-jox2017_R1_peak_1411 chrX 11630668 11630809 + 23 NA TTS (FBgn0030331) protein_coding-TTS (FBgn0030331) -2810 FBgn0085351 FBgn0085351 FBtr0112524 inaF-A protein_coding FLAG-S2-jox2017_R1_peak_708 chr3R 891471 891614 + 23 NA Intergenic Intergenic -19872 FBgn0263626 FBgn0263626 FBtr0309991 CR43635 ncRNA FLAG-S2-jox2017_R1_peak_1302 chrUextra 28899014 28899166 + 23 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_184 chr2L 19745793 19745933 + 23 NA exon (FBgn0032817, exon 7 of 8) protein_coding-exon (FBgn0032817, exon 7 of 8) 9821 FBgn0032816 FBgn0032816 FBtr0081289 Nf-YB protein_coding FLAG-S2-jox2017_R1_peak_1419 chrX 13293672 13293816 + 23 NA exon (FBgn0030482, exon 4 of 6) protein_coding-exon (FBgn0030482, exon 4 of 6) 2818 FBgn0030482 FBgn0030482 FBtr0073777 CG1673 protein_coding FLAG-S2-jox2017_R1_peak_1219 chrUextra 28424598 28424827 + 23 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_963 chr3R 25647593 25647732 + 23 NA intron (FBgn0039704, intron 1 of 7) protein_coding-intron (FBgn0039704, intron 1 of 7) 2828 FBgn0039704 FBgn0039704 FBtr0085486 neo protein_coding FLAG-S2-jox2017_R1_peak_1025 chrU 2701213 2701372 + 23 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_249 chr2R 3380000 3380159 + 23 NA promoter-TSS (FBgn0263240) protein_coding-promoter-TSS (FBgn0263240) 210 FBgn0263967 FBgn0263967 FBtr0329875 CR43723 ncRNA FLAG-S2-jox2017_R1_peak_768 chr3R 6468704 6468849 + 23 NA Intergenic Intergenic -13392 FBgn0085333 FBgn0085333 FBtr0112500 CG34304 protein_coding FLAG-S2-jox2017_R1_peak_600 chr3L 14771578 14771919 + 23 NA exon (FBgn0036449, exon 2 of 8) protein_coding-exon (FBgn0036449, exon 2 of 8) -2519 FBgn0036448 FBgn0036448 FBtr0075700 mop protein_coding FLAG-S2-jox2017_R1_peak_1444 chrX 17818418 17818780 + 23 NA TTS (FBgn0030884) protein_coding-TTS (FBgn0030884) 13103 FBgn0030884 FBgn0030884 FBtr0074505 CG6847 protein_coding FLAG-S2-jox2017_R1_peak_733 chr3R 3172703 3172855 + 23 NA TTS (FBgn0051496) protein_coding-TTS (FBgn0051496) 224 FBgn0051501 FBgn0051501 FBtr0081583 nxf4 protein_coding FLAG-S2-jox2017_R1_peak_1358 chrX 4240941 4241124 + 23 NA promoter-TSS (FBgn0262738) protein_coding-promoter-TSS (FBgn0262738) -17696 FBgn0029705 FBgn0029705 FBtr0070654 CG12693 protein_coding FLAG-S2-jox2017_R1_peak_278 chr2R 5119032 5119173 + 23 NA intron (FBgn0010114, intron 4 of 7) protein_coding-intron (FBgn0010114, intron 4 of 7) -5933 FBgn0033395 FBgn0033395 FBtr0088591 Cyp4p2 protein_coding FLAG-S2-jox2017_R1_peak_1274 chrUextra 28803855 28804093 + 23 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_845 chr3R 14080349 14080488 + 22 NA promoter-TSS (FBgn0261019) protein_coding-promoter-TSS (FBgn0261019) 773 FBgn0263757 FBgn0263757 FBtr0310379 Rpb4 protein_coding FLAG-S2-jox2017_R1_peak_523 chr3L 7119672 7119811 + 22 NA exon (FBgn0035741, exon 2 of 3) protein_coding-exon (FBgn0035741, exon 2 of 3) 736 FBgn0035741 FBgn0035741 FBtr0076912 BBS1 protein_coding FLAG-S2-jox2017_R1_peak_469 chr3L 1786603 1786761 + 22 NA exon (FBgn0250789, exon 3 of 7) protein_coding-exon (FBgn0250789, exon 3 of 7) 8646 FBgn0250789 FBgn0250789 FBtr0332878 alpha-Spec protein_coding FLAG-S2-jox2017_R1_peak_1337 chrX 990842 990981 + 22 NA intron (FBgn0040397, intron 3 of 6) protein_coding-intron (FBgn0040397, intron 2 of 4) 38018 FBgn0040397 FBgn0040397 FBtr0331339 CG3655 protein_coding FLAG-S2-jox2017_R1_peak_711 chr3R 1016858 1017034 + 22 NA intron (FBgn0259212, intron 6 of 19) protein_coding-intron (FBgn0259212, intron 6 of 16) 3939 FBgn0263018 FBgn0263018 FBtr0306791 snRNA:U4atac:82E snRNA FLAG-S2-jox2017_R1_peak_260 chr2R 4214787 4214949 + 22 NA promoter-TSS (FBgn0261588) protein_coding-promoter-TSS (FBgn0261588) -137 FBgn0261588 FBgn0261588 FBtr0302918 pdm3 protein_coding FLAG-S2-jox2017_R1_peak_798 chr3R 10248056 10248195 + 22 NA TTS (FBgn0085417) protein_coding-TTS (FBgn0085417) 3810 FBgn0085417 FBgn0085417 FBtr0301081 CG34388 protein_coding FLAG-S2-jox2017_R1_peak_656 chr3L 20275568 20275707 + 22 NA intron (FBgn0052227, intron 1 of 9) protein_coding-intron (FBgn0052227, intron 1 of 9) -7202 FBgn0036962 FBgn0036962 FBtr0074849 CG17122 protein_coding FLAG-S2-jox2017_R1_peak_362 chr2R 13809259 13809505 + 22 NA intron (FBgn0011589, intron 15 of 16) protein_coding-intron (FBgn0011589, intron 15 of 16) 26799 FBgn0034284 FBgn0034284 FBtr0086803 CG14491 protein_coding FLAG-S2-jox2017_R1_peak_554 chr3L 10240441 10240602 + 22 NA Intergenic Intergenic -2715 FBgn0036078 FBgn0036078 FBtr0076300 Or67c protein_coding FLAG-S2-jox2017_R1_peak_1122 chrUextra 17929896 17930146 + 22 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_414 chr2R 18158231 18158373 + 22 NA promoter-TSS (FBgn0020307) protein_coding-promoter-TSS (FBgn0020307) -123 FBgn0020307 FBgn0020307 FBtr0071776 dve protein_coding FLAG-S2-jox2017_R1_peak_632 chr3L 17887604 17887743 + 22 NA intron (FBgn0036769, intron 2 of 7) protein_coding-intron (FBgn0036769, intron 2 of 6) 1289 FBgn0036769 FBgn0036769 FBtr0075155 Tsp74F protein_coding FLAG-S2-jox2017_R1_peak_1424 chrX 14907589 14907728 + 22 NA exon (FBgn0030600, exon 19 of 23) protein_coding-exon (FBgn0030600, exon 19 of 23) -10809 FBgn0052594 FBgn0052594 FBtr0310270 be protein_coding FLAG-S2-jox2017_R1_peak_462 chr3L 1299367 1299506 + 22 NA TTS (FBgn0262937) protein_coding-TTS (FBgn0262937) 764 FBgn0025682 FBgn0025682 FBtr0089941 scf protein_coding FLAG-S2-jox2017_R1_peak_5 chr2L 626535 627388 + 22 NA exon (FBgn0031273, exon 1 of 1) protein_coding-exon (FBgn0031273, exon 1 of 1) 1298 FBgn0031273 FBgn0031273 FBtr0077999 CG2839 protein_coding FLAG-S2-jox2017_R1_peak_454 chr3L 292925 293079 + 22 NA exon (FBgn0264707, exon 1 of 7) protein_coding-exon (FBgn0264707, exon 1 of 7) 15565 FBgn0264707 FBgn0264707 FBtr0333957 RhoGEF3 protein_coding FLAG-S2-jox2017_R1_peak_1197 chrUextra 27997749 27998025 + 22 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_437 chr2R 20507306 20507445 + 22 NA intron (FBgn0035041, intron 7 of 7) protein_coding-intron (FBgn0035041, intron 7 of 7) -4712 FBgn0035040 FBgn0035040 FBtr0072337 CG4741 protein_coding FLAG-S2-jox2017_R1_peak_658 chr3L 20372548 20372751 + 22 NA exon (FBgn0036980, exon 5 of 13) protein_coding-exon (FBgn0036980, exon 5 of 13) 1807 FBgn0036980 FBgn0036980 FBtr0330158 RhoBTB protein_coding FLAG-S2-jox2017_R1_peak_599 chr3L 14757265 14757425 + 22 NA exon (FBgn0036446, exon 4 of 4) protein_coding-exon (FBgn0036446, exon 4 of 4) 2217 FBgn0036446 FBgn0036446 FBtr0333044 CG9384 protein_coding FLAG-S2-jox2017_R1_peak_1396 chrX 9212421 9212562 + 22 NA exon (FBgn0040235, exon 2 of 2) protein_coding-exon (FBgn0040235, exon 2 of 2) 786 FBgn0040235 FBgn0040235 FBtr0071324 c12.1 protein_coding FLAG-S2-jox2017_R1_peak_1076 chrUextra 9319838 9320023 + 22 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1423 chrX 14865163 14865302 + 22 NA exon (FBgn0000535, exon 3 of 17) protein_coding-exon (FBgn0000535, exon 3 of 17) 15722 FBgn0000535 FBgn0000535 FBtr0310015 eag protein_coding FLAG-S2-jox2017_R1_peak_1074 chrUextra 9178651 9178807 + 22 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_247 chr2R 3239360 3239530 + 22 NA exon (FBgn0033159, exon 6 of 24) protein_coding-exon (FBgn0033159, exon 6 of 24) 29929 FBgn0033159 FBgn0033159 FBtr0306787 Dscam protein_coding FLAG-S2-jox2017_R1_peak_1278 chrUextra 28817443 28817675 + 22 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_405 chr2R 17524455 17524594 + 22 NA exon (FBgn0034643, exon 2 of 2) protein_coding-exon (FBgn0034643, exon 2 of 2) 2351 FBgn0034643 FBgn0034643 FBtr0330228 CG10321 protein_coding FLAG-S2-jox2017_R1_peak_1290 chrUextra 28852382 28852617 + 22 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1319 chrUextra 28937456 28937712 + 22 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_289 chr2R 5929859 5930040 + 22 NA exon (FBgn0085249, exon 2 of 2) protein_coding-exon (FBgn0085249, exon 2 of 2) 1046 FBgn0085249 FBgn0085249 FBtr0112413 CG34220 protein_coding FLAG-S2-jox2017_R1_peak_365 chr2R 14095386 14095596 + 22 NA exon (FBgn0050114, exon 1 of 1) protein_coding-exon (FBgn0050114, exon 1 of 1) 231 FBgn0050114 FBgn0050114 FBtr0086753 CG30114 protein_coding FLAG-S2-jox2017_R1_peak_1250 chrUextra 28676988 28677214 + 22 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_322 chr2R 8516617 8516763 + 21 NA TTS (FBgn0033756) protein_coding-TTS (FBgn0033756) 3096 FBgn0033757 FBgn0033757 FBtr0087885 muskelin protein_coding FLAG-S2-jox2017_R1_peak_699 chr3R 367837 368057 + 21 NA exon (FBgn0037260, exon 2 of 2) protein_coding-exon (FBgn0037260, exon 2 of 2) 869 FBgn0037260 FBgn0037260 FBtr0303866 Mur82C protein_coding FLAG-S2-jox2017_R1_peak_1192 chrUextra 27929280 27929508 + 21 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_582 chr3L 13180573 13180720 + 21 NA Intergenic Intergenic 13068 FBgn0086916 FBgn0086916 FBtr0334063 snky protein_coding FLAG-S2-jox2017_R1_peak_1390 chrX 8242097 8242236 + 21 NA Intergenic Intergenic -18455 FBgn0015519 FBgn0015519 FBtr0289988 nAcRalpha-7E protein_coding FLAG-S2-jox2017_R1_peak_162 chr2L 18247539 18247685 + 21 NA intron (FBgn0261804, intron 2 of 14) protein_coding-intron (FBgn0261804, intron 2 of 14) -3795 FBgn0263325 FBgn0263325 FBtr0308756 CG43406 protein_coding FLAG-S2-jox2017_R1_peak_180 chr2L 19515099 19515388 + 21 NA exon (FBgn0032797, exon 5 of 17) protein_coding-exon (FBgn0032797, exon 5 of 17) 1958 FBgn0032797 FBgn0032797 FBtr0299519 CG10186 protein_coding FLAG-S2-jox2017_R1_peak_545 chr3L 9217037 9217237 + 21 NA Intergenic Intergenic 12157 FBgn0035969 FBgn0035969 FBtr0076429 CG4476 protein_coding FLAG-S2-jox2017_R1_peak_918 chr3R 21224567 21225125 + 21 NA exon (FBgn0051439, exon 2 of 2) protein_coding-exon (FBgn0051439, exon 2 of 2) 1521 FBgn0051439 FBgn0051439 FBtr0084845 Muc96D protein_coding FLAG-S2-jox2017_R1_peak_1141 chrUextra 22840201 22840435 + 21 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_301 chr2R 7105507 7105646 + 21 NA TTS (FBgn0003396) protein_coding-TTS (FBgn0003396) 1193 FBgn0033582 FBgn0033582 FBtr0330635 CG9084 protein_coding FLAG-S2-jox2017_R1_peak_1251 chrUextra 28683928 28684162 + 21 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_443 chr2R 20966976 20967142 + 21 NA intron (FBgn0004919, intron 1 of 7) protein_coding-intron (FBgn0004919, intron 1 of 6) 2488 FBgn0050200 FBgn0050200 FBtr0072447 tRNA:CR30200 tRNA FLAG-S2-jox2017_R1_peak_812 chr3R 11371917 11372056 + 21 NA exon (FBgn0038349, exon 4 of 8) protein_coding-exon (FBgn0038349, exon 4 of 8) 1471 FBgn0038349 FBgn0038349 FBtr0083151 CG6045 protein_coding FLAG-S2-jox2017_R1_peak_455 chr3L 376499 376642 + 21 NA exon (FBgn0262139, exon 1 of 10) protein_coding-exon (FBgn0262139, exon 1 of 10) 746 FBgn0262139 FBgn0262139 FBtr0333902 trh protein_coding FLAG-S2-jox2017_R1_peak_95 chr2L 10980559 10980709 + 21 NA exon (FBgn0041781, exon 3 of 5) protein_coding-exon (FBgn0041781, exon 3 of 5) 3865 FBgn0041781 FBgn0041781 FBtr0329950 SCAR protein_coding FLAG-S2-jox2017_R1_peak_422 chr2R 19287437 19287576 + 21 NA exon (FBgn0034859, exon 4 of 8) protein_coding-exon (FBgn0034859, exon 4 of 8) 2326 FBgn0034859 FBgn0034859 FBtr0072027 CG3520 protein_coding FLAG-S2-jox2017_R1_peak_831 chr3R 12954461 12954669 + 21 NA TTS (FBgn0038481) protein_coding-TTS (FBgn0038481) 619 FBgn0051265 FBgn0051265 FBtr0083402 CG31265 protein_coding FLAG-S2-jox2017_R1_peak_1364 chrX 4624287 4624426 + 21 NA TTS (FBgn0029723) protein_coding-TTS (FBgn0029723) 22405 FBgn0029723 FBgn0029723 FBtr0100552 Proc-R protein_coding FLAG-S2-jox2017_R1_peak_542 chr3L 8777370 8777509 + 21 NA intron (FBgn0261259, intron 5 of 18) protein_coding-intron (FBgn0261259, intron 3 of 16) 4206 FBgn0035926 FBgn0035926 FBtr0076591 CG5804 protein_coding FLAG-S2-jox2017_R1_peak_669 chr3L 21698191 21698330 + 21 NA exon (FBgn0052447, exon 1 of 3) protein_coding-exon (FBgn0052447, exon 1 of 3) 1205 FBgn0052447 FBgn0052447 FBtr0078461 CG32447 protein_coding FLAG-S2-jox2017_R1_peak_754 chr3R 5292233 5292460 + 21 NA exon (FBgn0037698, exon 12 of 12) protein_coding-exon (FBgn0037698, exon 12 of 12) -7448 FBgn0037697 FBgn0037697 FBtr0082042 CG9363 protein_coding FLAG-S2-jox2017_R1_peak_552 chr3L 9776249 9776404 + 21 NA exon (FBgn0036043, exon 10 of 13) protein_coding-exon (FBgn0036043, exon 10 of 13) 14461 FBgn0036044 FBgn0036044 FBtr0310626 CG14168 protein_coding FLAG-S2-jox2017_R1_peak_1093 chrUextra 11807741 11807880 + 21 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1255 chrUextra 28720957 28721258 + 21 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_366 chr2R 14420470 14420648 + 21 NA exon (FBgn0034356, exon 2 of 2) protein_coding-exon (FBgn0034356, exon 2 of 2) 646 FBgn0034356 FBgn0034356 FBtr0113093 CG10924 protein_coding FLAG-S2-jox2017_R1_peak_332 chr2R 9722532 9722687 + 21 NA promoter-TSS (FBgn0033873) protein_coding-promoter-TSS (FBgn0033873) -16 FBgn0033873 FBgn0033873 FBtr0087646 CG6337 protein_coding FLAG-S2-jox2017_R1_peak_1216 chrUextra 28357895 28358111 + 21 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_238 chr2R 2859948 2860092 + 21 NA promoter-TSS (FBgn0053558) protein_coding-promoter-TSS (FBgn0053558) -878 FBgn0053558 FBgn0053558 FBtr0332944 mim protein_coding FLAG-S2-jox2017_R1_peak_957 chr3R 24559250 24559433 + 21 NA exon (FBgn0027655, exon 29 of 29) protein_coding-exon (FBgn0027655, exon 29 of 29) 11144 FBgn0039595 FBgn0039595 FBtr0308641 AR-2 protein_coding FLAG-S2-jox2017_R1_peak_338 chr2R 10366104 10366362 + 20 NA Intergenic Intergenic -2483 FBgn0001332 FBgn0001332 FBtr0087492 L protein_coding FLAG-S2-jox2017_R1_peak_1198 chrUextra 28016859 28017085 + 20 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1086 chrUextra 10975231 10975461 + 20 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_60 chr2L 6417780 6417935 + 20 NA exon (FBgn0011722, exon 4 of 6) protein_coding-exon (FBgn0011722, exon 4 of 6) 5451 FBgn0011722 FBgn0011722 FBtr0079275 Tig protein_coding FLAG-S2-jox2017_R1_peak_1309 chrUextra 28912132 28912365 + 20 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1112 chrUextra 15559807 15559946 + 20 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_665 chr3L 20998981 20999120 + 20 NA TTS (FBgn0263486) snoRNA-TTS (FBgn0263486) 575 FBgn0263486 FBgn0263486 FBtr0309785 snoRNA:skd-a snoRNA FLAG-S2-jox2017_R1_peak_433 chr2R 19967668 19967836 + 20 NA promoter-TSS (FBgn0034973) protein_coding-promoter-TSS (FBgn0034973) 247 FBgn0034972 FBgn0034972 FBtr0072288 CG10339 protein_coding FLAG-S2-jox2017_R1_peak_540 chr3L 8597685 8597839 + 20 NA promoter-TSS (FBgn0035914) protein_coding-promoter-TSS (FBgn0035914) 5 FBgn0035914 FBgn0035914 FBtr0330165 CG6282 protein_coding FLAG-S2-jox2017_R1_peak_907 chr3R 20130871 20131275 + 20 NA exon (FBgn0259685, exon 2 of 13) protein_coding-exon (FBgn0259685, exon 2 of 13) 10273 FBgn0259685 FBgn0259685 FBtr0304726 crb protein_coding FLAG-S2-jox2017_R1_peak_608 chr3L 15912390 15912537 + 20 NA intron (FBgn0036544, intron 1 of 15) protein_coding-intron (FBgn0036544, intron 1 of 15) 5498 FBgn0036544 FBgn0036544 FBtr0334071 sff protein_coding FLAG-S2-jox2017_R1_peak_663 chr3L 20693924 20694092 + 20 NA Intergenic Intergenic -5530 FBgn0001320 FBgn0001320 FBtr0078283 kni protein_coding FLAG-S2-jox2017_R1_peak_1012 chrU 69457 69612 + 20 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_836 chr3R 13552778 13552917 + 20 NA intron (FBgn0016650, intron 1 of 16) protein_coding-intron (FBgn0016650, intron 1 of 16) 1599 FBgn0016650 FBgn0016650 FBtr0083510 Lgr1 protein_coding FLAG-S2-jox2017_R1_peak_128 chr2L 14238945 14239085 + 20 NA Intergenic Intergenic -4893 FBgn0016930 FBgn0016930 FBtr0329933 smi35A protein_coding FLAG-S2-jox2017_R1_peak_685 chr3L 23420514 23420653 + 20 NA Intergenic Intergenic 88157 FBgn0052230 FBgn0052230 FBtr0070041 CG32230 protein_coding FLAG-S2-jox2017_R1_peak_159 chr2L 18090952 18091091 + 20 NA TTS (FBgn0032663) protein_coding-TTS (FBgn0032663) 1217 FBgn0032663 FBgn0032663 FBtr0081045 CG15153 protein_coding FLAG-S2-jox2017_R1_peak_1035 chrUextra 27060 27363 + 20 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_475 chr3L 2114068 2114223 + 20 NA exon (FBgn0086906, exon 2 of 14) protein_coding-exon (FBgn0086906, exon 2 of 14) 1466 FBgn0086906 FBgn0086906 FBtr0072848 sls protein_coding FLAG-S2-jox2017_R1_peak_1408 chrX 10838131 10838270 + 20 NA exon (FBgn0263705, exon 3 of 7) protein_coding-exon (FBgn0263705, exon 3 of 7) 6863 FBgn0052671 FBgn0052671 FBtr0073402 Rab9Fa protein_coding FLAG-S2-jox2017_R1_peak_1362 chrX 4506652 4506897 + 20 NA Intergenic Intergenic -1356 FBgn0052773 FBgn0052773 FBtr0070703 CG32773 protein_coding FLAG-S2-jox2017_R1_peak_494 chr3L 3394340 3394492 + 20 NA Intergenic Intergenic 16148 FBgn0035445 FBgn0035445 FBtr0073077 CG12014 protein_coding FLAG-S2-jox2017_R1_peak_823 chr3R 12071563 12071702 + 20 NA intron (FBgn0040071, intron 1 of 1) protein_coding-intron (FBgn0040071, intron 1 of 1) 3091 FBgn0040071 FBgn0040071 FBtr0083258 tara protein_coding FLAG-S2-jox2017_R1_peak_1261 chrUextra 28738462 28738782 + 20 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_389 chr2R 16184437 16184576 + 20 NA Intergenic Intergenic -5058 FBgn0034499 FBgn0034499 FBtr0086301 Cpr56F protein_coding FLAG-S2-jox2017_R1_peak_784 chr3R 8986635 8986774 + 20 NA intron (FBgn0038118, intron 14 of 17) protein_coding-intron (FBgn0038118, intron 14 of 17) -5318 FBgn0260793 FBgn0260793 FBtr0330143 2mit protein_coding FLAG-S2-jox2017_R1_peak_261 chr2R 4284295 4284434 + 20 NA TTS (FBgn0261588) protein_coding-TTS (FBgn0261588) 14864 FBgn0033289 FBgn0033289 FBtr0088764 CG2121 protein_coding FLAG-S2-jox2017_R1_peak_1217 chrUextra 28408028 28408357 + 20 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_428 chr2R 19813386 19813556 + 20 NA TTS (FBgn0261794) protein_coding-TTS (FBgn0261794) 709 FBgn0034931 FBgn0034931 FBtr0072140 CG2812 protein_coding FLAG-S2-jox2017_R1_peak_1382 chrX 6761428 6761567 + 20 NA Intergenic Intergenic -1044 FBgn0263993 FBgn0263993 FBtr0330263 CG43736 protein_coding FLAG-S2-jox2017_R1_peak_1244 chrUextra 28633362 28633596 + 20 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_299 chr2R 6861923 6862127 + 20 NA Intergenic Intergenic -32819 FBgn0033574 FBgn0033574 FBtr0088211 Spn47C protein_coding FLAG-S2-jox2017_R1_peak_829 chr3R 12744834 12745034 + 20 NA intron (FBgn0263610, intron 1 of 7) ncRNA-intron (FBgn0263610, intron 1 of 7) 4021 FBgn0263610 FBgn0263610 FBtr0306339 msa ncRNA FLAG-S2-jox2017_R1_peak_1395 chrX 9134153 9134402 + 20 NA exon (FBgn0260789, exon 5 of 7) protein_coding-exon (FBgn0260789, exon 5 of 7) 2960 FBgn0260789 FBgn0260789 FBtr0071332 mxc protein_coding FLAG-S2-jox2017_R1_peak_1400 chrX 10117278 10117417 + 20 NA exon (FBgn0085437, exon 5 of 15) protein_coding-exon (FBgn0085437, exon 5 of 15) 3204 FBgn0085437 FBgn0085437 FBtr0114584 CG34408 protein_coding FLAG-S2-jox2017_R1_peak_1229 chrUextra 28555511 28555754 + 20 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_88 chr2L 10212516 10212739 + 20 NA exon (FBgn0032194, exon 4 of 5) protein_coding-exon (FBgn0032194, exon 4 of 5) 1444 FBgn0032194 FBgn0032194 FBtr0079947 CG4901 protein_coding FLAG-S2-jox2017_R1_peak_498 chr3L 4104338 4104666 + 20 NA exon (FBgn0035498, exon 1 of 1) protein_coding-exon (FBgn0035498, exon 1 of 1) 938 FBgn0035498 FBgn0035498 FBtr0073209 Fit1 protein_coding FLAG-S2-jox2017_R1_peak_653 chr3L 20264679 20264881 + 20 NA exon (FBgn0052227, exon 6 of 10) protein_coding-exon (FBgn0052227, exon 6 of 10) 3655 FBgn0036962 FBgn0036962 FBtr0074849 CG17122 protein_coding FLAG-S2-jox2017_R1_peak_693 chr3R 190980 191173 + 20 NA exon (FBgn0037238, exon 5 of 6) protein_coding-exon (FBgn0037238, exon 5 of 6) 5471 FBgn0037238 FBgn0037238 FBtr0332450 CG1090 protein_coding FLAG-S2-jox2017_R1_peak_683 chr3L 23213534 23213673 + 20 NA intron (FBgn0037212, intron 3 of 10) protein_coding-intron (FBgn0037212, intron 3 of 11) 13834 FBgn0037212 FBgn0037212 FBtr0308331 nAcRalpha-80B protein_coding FLAG-S2-jox2017_R1_peak_524 chr3L 7138512 7138651 + 20 NA exon (FBgn0259173, exon 4 of 6) protein_coding-exon (FBgn0259173, exon 4 of 6) 10965 FBgn0023001 FBgn0023001 FBtr0333373 melt protein_coding FLAG-S2-jox2017_R1_peak_578 chr3L 12514474 12514975 + 20 NA TTS (FBgn0041775) protein_coding-TTS (FBgn0041775) 2390 FBgn0020388 FBgn0020388 FBtr0075969 Pcaf protein_coding FLAG-S2-jox2017_R1_peak_1394 chrX 8976976 8977115 + 20 NA promoter-TSS (FBgn0052707) protein_coding-promoter-TSS (FBgn0052707) 75 FBgn0052707 FBgn0052707 FBtr0334032 APC4 protein_coding FLAG-S2-jox2017_R1_peak_779 chr3R 8284341 8284480 + 20 NA TTS (FBgn0038055) protein_coding-TTS (FBgn0038055) 1606 FBgn0038056 FBgn0038056 FBtr0082681 CG5961 protein_coding FLAG-S2-jox2017_R1_peak_1168 chrUextra 26550153 26550448 + 20 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_948 chr3R 23582048 23582200 + 20 NA Intergenic Intergenic 19862 FBgn0005659 FBgn0005659 FBtr0085224 Ets98B protein_coding FLAG-S2-jox2017_R1_peak_604 chr3L 15115980 15116122 + 20 NA TTS (FBgn0052847) protein_coding-TTS (FBgn0052847) 1379 FBgn0052847 FBgn0052847 FBtr0075639 CG32847 protein_coding FLAG-S2-jox2017_R1_peak_795 chr3R 10003533 10003741 + 20 NA exon (FBgn0011582, exon 6 of 6) protein_coding-exon (FBgn0011582, exon 6 of 6) 15206 FBgn0038210 FBgn0038210 FBtr0082894 CG3199 protein_coding FLAG-S2-jox2017_R1_peak_141 chr2L 16039416 16039555 + 20 NA exon (FBgn0028644, exon 8 of 8) protein_coding-exon (FBgn0028644, exon 8 of 8) -5067 FBgn0000182 FBgn0000182 FBtr0080805 BicC protein_coding FLAG-S2-jox2017_R1_peak_9 chr2L 1508335 1508527 + 20 NA Intergenic Intergenic -5528 FBgn0031344 FBgn0031344 FBtr0077933 CG7420 protein_coding FLAG-S2-jox2017_R1_peak_690 chr3R 95891 96030 + 20 NA exon (FBgn0037229, exon 2 of 4) protein_coding-exon (FBgn0037229, exon 2 of 4) 3266 FBgn0037228 FBgn0037228 FBtr0111222 CG1092 protein_coding FLAG-S2-jox2017_R1_peak_549 chr3L 9460977 9461162 + 20 NA intron (FBgn0052043, intron 1 of 3) protein_coding-intron (FBgn0052043, intron 2 of 4) 4651 FBgn0052043 FBgn0052043 FBtr0333854 CG32043 protein_coding FLAG-S2-jox2017_R1_peak_126 chr2L 13950516 13950705 + 20 NA intron (FBgn0032536, intron 7 of 8) protein_coding-intron (FBgn0032536, intron 7 of 8) -3138 FBgn0028544 FBgn0028544 FBtr0080557 CG16884 protein_coding FLAG-S2-jox2017_R1_peak_847 chr3R 14204071 14204332 + 20 NA exon (FBgn0038610, exon 3 of 3) protein_coding-exon (FBgn0038610, exon 3 of 3) 2696 FBgn0038610 FBgn0038610 FBtr0083583 CG7675 protein_coding FLAG-S2-jox2017_R1_peak_44 chr2L 5201721 5201954 + 19 NA promoter-TSS (FBgn0083028) snoRNA-promoter-TSS (FBgn0083028) -546 FBgn0083028 FBgn0083028 FBtr0113538 snoRNA:Psi18S-525k snoRNA FLAG-S2-jox2017_R1_peak_316 chr2R 8063845 8064097 + 19 NA TTS (FBgn0033690) protein_coding-TTS (FBgn0033690) 1370 FBgn0010621 FBgn0010621 FBtr0087988 Cct5 protein_coding FLAG-S2-jox2017_R1_peak_1224 chrUextra 28504434 28504598 + 19 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_160 chr2L 18140904 18141047 + 19 NA exon (FBgn0041184, exon 3 of 4) protein_coding-exon (FBgn0041184, exon 3 of 4) -2765 FBgn0001301 FBgn0001301 FBtr0081043 kel protein_coding FLAG-S2-jox2017_R1_peak_788 chr3R 9491978 9492117 + 19 NA intron (FBgn0004587, intron 8 of 8) protein_coding-intron (FBgn0004587, intron 8 of 8) 5025 FBgn0004587 FBgn0004587 FBtr0082806 B52 protein_coding FLAG-S2-jox2017_R1_peak_1300 chrUextra 28891413 28891643 + 19 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_187 chr2L 19806973 19807112 + 19 NA intron (FBgn0263873, intron 1 of 15) protein_coding-intron (FBgn0263873, intron 1 of 15) -3692 FBgn0003931 FBgn0003931 FBtr0081292 snRNA:U4:38AB snRNA FLAG-S2-jox2017_R1_peak_375 chr2R 15058568 15058730 + 19 NA exon (FBgn0034420, exon 2 of 15) protein_coding-exon (FBgn0034420, exon 2 of 15) 1004 FBgn0034420 FBgn0034420 FBtr0290318 CG10737 protein_coding FLAG-S2-jox2017_R1_peak_947 chr3R 23426098 23426243 + 19 NA exon (FBgn0039528, exon 5 of 8) protein_coding-exon (FBgn0039528, exon 5 of 8) -6910 FBgn0039527 FBgn0039527 FBtr0085202 CG5639 protein_coding FLAG-S2-jox2017_R1_peak_643 chr3L 19242409 19242548 + 19 NA Intergenic Intergenic 5683 FBgn0036853 FBgn0036853 FBtr0075022 mRpL21 protein_coding FLAG-S2-jox2017_R1_peak_1339 chrX 1281002 1281141 + 19 NA intron (FBgn0052813, intron 3 of 4) protein_coding-intron (FBgn0052813, intron 2 of 3) -1532 FBgn0052813 FBgn0052813 FBtr0330320 CG32813 protein_coding FLAG-S2-jox2017_R1_peak_144 chr2L 16342896 16343035 + 19 NA promoter-TSS (FBgn0259151) protein_coding-promoter-TSS (FBgn0259151) -641 FBgn0259151 FBgn0259151 FBtr0299599 CG42266 protein_coding FLAG-S2-jox2017_R1_peak_339 chr2R 10797648 10797944 + 19 NA exon (FBgn0027596, exon 3 of 10) protein_coding-exon (FBgn0027596, exon 3 of 10) -2320 FBgn0027596 FBgn0027596 FBtr0303758 CG10249 protein_coding FLAG-S2-jox2017_R1_peak_714 chr3R 1120185 1120364 + 19 NA exon (FBgn0013576, exon 11 of 19) protein_coding-exon (FBgn0013576, exon 11 of 19) 2964 FBgn0013576 FBgn0013576 FBtr0333694 mtd protein_coding FLAG-S2-jox2017_R1_peak_547 chr3L 9337261 9337478 + 19 NA promoter-TSS (FBgn0035976) protein_coding-promoter-TSS (FBgn0035976) 3815 FBgn0035976 FBgn0035976 FBtr0300291 PGRP-LC protein_coding FLAG-S2-jox2017_R1_peak_724 chr3R 2225791 2226184 + 19 NA intron (FBgn0037443, intron 1 of 10) protein_coding-intron (FBgn0037443, intron 1 of 10) 5626 FBgn0037443 FBgn0037443 FBtr0300261 CG1021 protein_coding FLAG-S2-jox2017_R1_peak_10 chr2L 1738373 1738512 + 19 NA intron (FBgn0264494, intron 1 of 11) protein_coding-intron (FBgn0264494, intron 1 of 11) 973 FBgn0264494 FBgn0264494 FBtr0077886 CG17646 protein_coding FLAG-S2-jox2017_R1_peak_490 chr3L 3045849 3046085 + 19 NA exon (FBgn0035390, exon 2 of 4) protein_coding-exon (FBgn0035390, exon 2 of 4) 845 FBgn0035390 FBgn0035390 FBtr0073005 scramb2 protein_coding FLAG-S2-jox2017_R1_peak_605 chr3L 15191901 15192060 + 19 NA Intergenic Intergenic -8964 FBgn0036490 FBgn0036490 FBtr0075644 CG6888 protein_coding FLAG-S2-jox2017_R1_peak_28 chr2L 3843264 3843407 + 19 NA Intergenic Intergenic 6493 FBgn0004567 FBgn0004567 FBtr0077500 slp2 protein_coding FLAG-S2-jox2017_R1_peak_481 chr3L 2491376 2491515 + 19 NA exon (FBgn0035346, exon 2 of 2) protein_coding-exon (FBgn0035346, exon 2 of 2) 1225 FBgn0035346 FBgn0035346 FBtr0072923 CG1146 protein_coding FLAG-S2-jox2017_R1_peak_348 chr2R 12054196 12054336 + 19 NA exon (FBgn0034083, exon 6 of 9) protein_coding-exon (FBgn0034083, exon 6 of 9) 4100 FBgn0034084 FBgn0034084 FBtr0087249 CG8435 protein_coding FLAG-S2-jox2017_R1_peak_1344 chrX 1501927 1502066 + 19 NA promoter-TSS (FBgn0000210) protein_coding-promoter-TSS (FBgn0000210) -4378 FBgn0000210 FBgn0000210 FBtr0303563 br protein_coding FLAG-S2-jox2017_R1_peak_767 chr3R 6220439 6220629 + 19 NA intron (FBgn0259938, intron 1 of 2) protein_coding-intron (FBgn0259938, intron 1 of 3) -6220 FBgn0045443 FBgn0045443 FBtr0332553 mthl11 protein_coding FLAG-S2-jox2017_R1_peak_1087 chrUextra 11050117 11050380 + 19 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_125 chr2L 13908606 13908860 + 19 NA promoter-TSS (FBgn0032535) protein_coding-promoter-TSS (FBgn0032535) -907 FBgn0032535 FBgn0032535 FBtr0080554 Ance-2 protein_coding FLAG-S2-jox2017_R1_peak_119 chr2L 13480574 13480748 + 19 NA intron (FBgn0263354, intron 4 of 8) protein_coding-intron (FBgn0263354, intron 4 of 8) 18887 FBgn0263354 FBgn0263354 FBtr0303440 CG42784 protein_coding FLAG-S2-jox2017_R1_peak_848 chr3R 14320950 14321089 + 19 NA intron (FBgn0004652, intron 2 of 8) protein_coding-intron (FBgn0004652, intron 2 of 7) 50289 FBgn0004652 FBgn0004652 FBtr0083647 fru protein_coding FLAG-S2-jox2017_R1_peak_527 chr3L 7391063 7391202 + 19 NA promoter-TSS (FBgn0035779) protein_coding-promoter-TSS (FBgn0035779) -253 FBgn0035779 FBgn0035779 FBtr0076854 CG8562 protein_coding FLAG-S2-jox2017_R1_peak_720 chr3R 1671448 1671587 + 19 NA exon (FBgn0037387, exon 4 of 4) protein_coding-exon (FBgn0037387, exon 4 of 4) -1425 FBgn0037388 FBgn0037388 FBtr0078645 CG14676 protein_coding FLAG-S2-jox2017_R1_peak_804 chr3R 10862457 10862668 + 19 NA promoter-TSS (FBgn0038281) protein_coding-promoter-TSS (FBgn0038281) -526 FBgn0038281 FBgn0038281 FBtr0083024 RpL10Aa protein_coding FLAG-S2-jox2017_R1_peak_268 chr2R 4459044 4459242 + 19 NA exon (FBgn0033304, exon 1 of 1) protein_coding-exon (FBgn0033304, exon 1 of 1) 1139 FBgn0033304 FBgn0033304 FBtr0088690 Cyp6a13 protein_coding FLAG-S2-jox2017_R1_peak_171 chr2L 19005421 19005621 + 19 NA exon (FBgn0051793, exon 4 of 6) protein_coding-exon (FBgn0051793, exon 4 of 6) 2111 FBgn0051793 FBgn0051793 FBtr0310616 CG31793 protein_coding FLAG-S2-jox2017_R1_peak_493 chr3L 3359912 3360088 + 19 NA exon (FBgn0004167, exon 11 of 14) protein_coding-exon (FBgn0004167, exon 11 of 14) -9556 FBgn0010381 FBgn0010381 FBtr0073073 Drs protein_coding FLAG-S2-jox2017_R1_peak_780 chr3R 8517801 8517941 + 19 NA promoter-TSS (FBgn0005355) protein_coding-promoter-TSS (FBgn0005355) 413 FBgn0011745 FBgn0011745 FBtr0082652 Arp87C protein_coding FLAG-S2-jox2017_R1_peak_283 chr2R 5740413 5740552 + 19 NA exon (FBgn0027580, exon 5 of 7) protein_coding-exon (FBgn0027580, exon 5 of 7) 4916 FBgn0033454 FBgn0033454 FBtr0088373 CG1671 protein_coding FLAG-S2-jox2017_R1_peak_440 chr2R 20642284 20642511 + 19 NA exon (FBgn0050421, exon 5 of 7) protein_coding-exon (FBgn0050421, exon 5 of 7) -2506 FBgn0035056 FBgn0035056 FBtr0072370 spz6 protein_coding FLAG-S2-jox2017_R1_peak_131 chr2L 14580965 14581155 + 19 NA Intergenic Intergenic 7174 FBgn0261566 FBgn0261566 FBtr0302802 CG42680 protein_coding FLAG-S2-jox2017_R1_peak_814 chr3R 11552064 11552279 + 19 NA Intergenic Intergenic -5297 FBgn0085303 FBgn0085303 FBtr0112469 CG34274 protein_coding FLAG-S2-jox2017_R1_peak_726 chr3R 2296460 2296599 + 19 NA exon (FBgn0037447, exon 1 of 1) protein_coding-exon (FBgn0037447, exon 1 of 1) 2395 FBgn0037447 FBgn0037447 FBtr0081729 Neurochondrin protein_coding FLAG-S2-jox2017_R1_peak_271 chr2R 4604838 4604987 + 18 NA TTS (FBgn0040777) protein_coding-TTS (FBgn0040777) 440 FBgn0043575 FBgn0043575 FBtr0088709 PGRP-SC2 protein_coding FLAG-S2-jox2017_R1_peak_630 chr3L 17701736 17701886 + 18 NA intron (FBgn0052183, intron 1 of 9) protein_coding-intron (FBgn0052183, intron 1 of 9) 11143 FBgn0261294 FBgn0261294 FBtr0091928 CheB74a protein_coding FLAG-S2-jox2017_R1_peak_185 chr2L 19766470 19766616 + 18 NA exon (FBgn0000529, exon 4 of 4) protein_coding-exon (FBgn0000529, exon 4 of 4) -2409 FBgn0032820 FBgn0032820 FBtr0081322 fbp protein_coding FLAG-S2-jox2017_R1_peak_721 chr3R 1999544 1999699 + 18 NA exon (FBgn0037406, exon 1 of 3) protein_coding-exon (FBgn0037406, exon 1 of 3) 254 FBgn0037406 FBgn0037406 FBtr0078588 Osi1 protein_coding FLAG-S2-jox2017_R1_peak_463 chr3L 1505480 1505779 + 18 NA exon (FBgn0011204, exon 2 of 4) protein_coding-exon (FBgn0011204, exon 2 of 4) -3039 FBgn0028577 FBgn0028577 FBtr0301523 pUf68 protein_coding FLAG-S2-jox2017_R1_peak_515 chr3L 6136154 6136295 + 18 NA promoter-TSS (FBgn0020641) protein_coding-promoter-TSS (FBgn0020641) -271 FBgn0020641 FBgn0020641 FBtr0076990 Lcp65Ad protein_coding FLAG-S2-jox2017_R1_peak_1005 chr4 498064 498203 + 18 NA exon (FBgn0039908, exon 8 of 14) protein_coding-exon (FBgn0039908, exon 8 of 14) 6296 FBgn0039908 FBgn0039908 FBtr0332904 Asator protein_coding FLAG-S2-jox2017_R1_peak_786 chr3R 9003202 9003436 + 18 NA Intergenic Intergenic -3707 FBgn0038122 FBgn0038122 FBtr0082732 CG8138 protein_coding FLAG-S2-jox2017_R1_peak_818 chr3R 11756171 11756338 + 18 NA exon (FBgn0038385, exon 2 of 5) protein_coding-exon (FBgn0038385, exon 2 of 5) 3202 FBgn0038386 FBgn0038386 FBtr0083242 CG5478 protein_coding FLAG-S2-jox2017_R1_peak_920 chr3R 21444976 21445115 + 18 NA exon (FBgn0039347, exon 1 of 1) protein_coding-exon (FBgn0039347, exon 1 of 1) 909 FBgn0039347 FBgn0039347 FBtr0304805 CG5071 protein_coding FLAG-S2-jox2017_R1_peak_881 chr3R 17300216 17300413 + 18 NA Intergenic Intergenic -7733 FBgn0038889 FBgn0038889 FBtr0084109 CG7922 protein_coding FLAG-S2-jox2017_R1_peak_202 chr2L 21899542 21899697 + 18 NA Intergenic Intergenic -1330 FBgn0032965 FBgn0032965 FBtr0085950 CG11629 protein_coding FLAG-S2-jox2017_R1_peak_965 chr3R 25751027 25751336 + 18 NA promoter-TSS (FBgn0003356) protein_coding-promoter-TSS (FBgn0003356) 730 FBgn0003358 FBgn0003358 FBtr0085511 Jon99Ci protein_coding FLAG-S2-jox2017_R1_peak_840 chr3R 13981604 13981910 + 18 NA Intergenic Intergenic -2666 FBgn0038568 FBgn0038568 FBtr0083547 CG14315 protein_coding FLAG-S2-jox2017_R1_peak_518 chr3L 6177251 6177390 + 18 NA promoter-TSS (FBgn0262985) protein_coding-promoter-TSS (FBgn0262985) 700 FBgn0022699 FBgn0022699 FBtr0077017 D19B protein_coding FLAG-S2-jox2017_R1_peak_692 chr3R 189026 189359 + 18 NA exon (FBgn0037238, exon 2 of 6) protein_coding-exon (FBgn0037238, exon 2 of 6) 3587 FBgn0037238 FBgn0037238 FBtr0332450 CG1090 protein_coding FLAG-S2-jox2017_R1_peak_732 chr3R 3172225 3172364 + 18 NA promoter-TSS (FBgn0051501) protein_coding-promoter-TSS (FBgn0051501) -261 FBgn0051501 FBgn0051501 FBtr0081583 nxf4 protein_coding FLAG-S2-jox2017_R1_peak_995 chr3RHet 627097 627236 + 18 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_473 chr3L 2042492 2042636 + 18 NA exon (FBgn0086906, exon 35 of 41) protein_coding-exon (FBgn0086906, exon 35 of 41) -4340 FBgn0259701 FBgn0259701 FBtr0309792 CG42355 protein_coding FLAG-S2-jox2017_R1_peak_774 chr3R 7522890 7523072 + 18 NA exon (FBgn0037938, exon 1 of 1) protein_coding-exon (FBgn0037938, exon 1 of 1) 750 FBgn0037938 FBgn0037938 FBtr0082425 CG14717 protein_coding FLAG-S2-jox2017_R1_peak_1348 chrX 2331270 2331409 + 18 NA Intergenic Intergenic 6670 FBgn0003714 FBgn0003714 FBtr0308831 tko protein_coding FLAG-S2-jox2017_R1_peak_1341 chrX 1353297 1353436 + 18 NA exon (FBgn0027794, exon 1 of 2) protein_coding-exon (FBgn0027794, exon 1 of 2) 1284 FBgn0027794 FBgn0027794 FBtr0070230 CG14786 protein_coding FLAG-S2-jox2017_R1_peak_281 chr2R 5322783 5323010 + 18 NA TTS (FBgn0017558) protein_coding-TTS (FBgn0017558) 6170 FBgn0029092 FBgn0029092 FBtr0088550 ced-6 protein_coding FLAG-S2-jox2017_R1_peak_684 chr3L 23301743 23301904 + 18 NA Intergenic Intergenic 29377 FBgn0010215 FBgn0010215 FBtr0070038 alpha-Cat protein_coding FLAG-S2-jox2017_R1_peak_959 chr3R 25200854 25200993 + 18 NA Intergenic Intergenic -55587 FBgn0015622 FBgn0015622 FBtr0110909 Cnx99A protein_coding FLAG-S2-jox2017_R1_peak_470 chr3L 1787800 1787941 + 18 NA exon (FBgn0250789, exon 3 of 7) protein_coding-exon (FBgn0250789, exon 3 of 7) 7458 FBgn0250789 FBgn0250789 FBtr0332878 alpha-Spec protein_coding FLAG-S2-jox2017_R1_peak_521 chr3L 6661737 6661920 + 18 NA promoter-TSS (FBgn0041232) protein_coding-promoter-TSS (FBgn0041232) -912 FBgn0041232 FBgn0041232 FBtr0300026 Gr65a protein_coding FLAG-S2-jox2017_R1_peak_1153 chrUextra 24444596 24444827 + 18 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_919 chr3R 21313026 21313422 + 18 NA exon (FBgn0040212, exon 3 of 4) protein_coding-exon (FBgn0040212, exon 3 of 4) 3434 FBgn0040212 FBgn0040212 FBtr0330374 Dhap-at protein_coding FLAG-S2-jox2017_R1_peak_502 chr3L 4460875 4461062 + 18 NA promoter-TSS (FBgn0035547) protein_coding-promoter-TSS (FBgn0035547) 403 FBgn0035548 FBgn0035548 FBtr0331409 CG15023 protein_coding FLAG-S2-jox2017_R1_peak_715 chr3R 1211159 1211496 + 18 NA intron (FBgn0001311, intron 2 of 10) protein_coding-intron (FBgn0001311, intron 2 of 11) 2086 FBgn0037320 FBgn0037320 FBtr0078801 CG14668 protein_coding FLAG-S2-jox2017_R1_peak_354 chr2R 12938261 12938427 + 18 NA exon (FBgn0034184, exon 4 of 7) protein_coding-exon (FBgn0034184, exon 4 of 7) 1964 FBgn0034184 FBgn0034184 FBtr0086974 CG9646 protein_coding FLAG-S2-jox2017_R1_peak_1338 chrX 1217796 1217935 + 18 NA exon (FBgn0004650, exon 2 of 7) protein_coding-exon (FBgn0004650, exon 2 of 7) 1319 FBgn0004650 FBgn0004650 FBtr0332286 fs(1)N protein_coding FLAG-S2-jox2017_R1_peak_853 chr3R 14935089 14935228 + 18 NA intron (FBgn0038679, intron 1 of 7) protein_coding-intron (FBgn0038679, intron 1 of 7) 14444 FBgn0016120 FBgn0016120 FBtr0083728 ATPsyn-d protein_coding FLAG-S2-jox2017_R1_peak_94 chr2L 10751872 10752014 + 18 NA intron (FBgn0032297, intron 1 of 3) protein_coding-intron (FBgn0032297, intron 1 of 3) 4373 FBgn0032297 FBgn0032297 FBtr0080117 CG17124 protein_coding FLAG-S2-jox2017_R1_peak_8 chr2L 994710 994849 + 18 NA Intergenic Intergenic 32111 FBgn0031295 FBgn0031295 FBtr0310271 CG4375 protein_coding FLAG-S2-jox2017_R1_peak_97 chr2L 11111652 11111796 + 18 NA TTS (FBgn0261983) protein_coding-TTS (FBgn0261983) 1339 FBgn0032343 FBgn0032343 FBtr0080229 CG6201 protein_coding FLAG-S2-jox2017_R1_peak_935 chr3R 22499151 22499314 + 18 NA intron (FBgn0250908, intron 1 of 8) protein_coding-intron (FBgn0250908, intron 1 of 8) 8456 FBgn0250908 FBgn0250908 FBtr0290328 beat-VII protein_coding FLAG-S2-jox2017_R1_peak_442 chr2R 20939802 20939941 + 18 NA promoter-TSS (FBgn0001147) protein_coding-promoter-TSS (FBgn0001147) -21 FBgn0001147 FBgn0001147 FBtr0072461 gsb-n protein_coding FLAG-S2-jox2017_R1_peak_177 chr2L 19209247 19209475 + 18 NA TTS (FBgn0015380) protein_coding-TTS (FBgn0015380) 19015 FBgn0015380 FBgn0015380 FBtr0330209 drl protein_coding FLAG-S2-jox2017_R1_peak_81 chr2L 9390257 9390547 + 18 NA exon (FBgn0012036, exon 4 of 4) protein_coding-exon (FBgn0012036, exon 4 of 4) 2843 FBgn0012036 FBgn0012036 FBtr0332597 Aldh protein_coding FLAG-S2-jox2017_R1_peak_1284 chrUextra 28833595 28833819 + 18 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_742 chr3R 3952510 3952670 + 18 NA promoter-TSS (FBgn0037550) protein_coding-promoter-TSS (FBgn0037550) 254 FBgn0037551 FBgn0037551 FBtr0081794 Gie protein_coding FLAG-S2-jox2017_R1_peak_891 chr3R 18359983 18360122 + 18 NA intron (FBgn0038983, intron 1 of 4) protein_coding-intron (FBgn0038983, intron 1 of 4) -2408 FBgn0053093 FBgn0053093 FBtr0084287 CG33093 protein_coding FLAG-S2-jox2017_R1_peak_586 chr3L 13843822 13843989 + 18 NA exon (FBgn0029167, exon 12 of 26) protein_coding-exon (FBgn0029167, exon 12 of 26) 4751 FBgn0029167 FBgn0029167 FBtr0333020 Hml protein_coding FLAG-S2-jox2017_R1_peak_183 chr2L 19553647 19553790 + 18 NA exon (FBgn0041180, exon 5 of 7) protein_coding-exon (FBgn0041180, exon 5 of 7) -4329 FBgn0032808 FBgn0032808 FBtr0331331 CG13079 protein_coding FLAG-S2-jox2017_R1_peak_407 chr2R 17593613 17593752 + 18 NA Intergenic Intergenic -3269 FBgn0010228 FBgn0010228 FBtr0071674 HmgZ protein_coding FLAG-S2-jox2017_R1_peak_100 chr2L 11456935 11457123 + 18 NA Intergenic Intergenic -11426 FBgn0261648 FBgn0261648 FBtr0089913 salm protein_coding FLAG-S2-jox2017_R1_peak_528 chr3L 7392689 7392828 + 18 NA promoter-TSS (FBgn0035780) protein_coding-promoter-TSS (FBgn0035780) -412 FBgn0035780 FBgn0035780 FBtr0076855 CG18417 protein_coding FLAG-S2-jox2017_R1_peak_857 chr3R 15334761 15334924 + 18 NA promoter-TSS (FBgn0260003) protein_coding-promoter-TSS (FBgn0260003) -18005 FBgn0038709 FBgn0038709 FBtr0083768 CG15025 protein_coding FLAG-S2-jox2017_R1_peak_468 chr3L 1752880 1753019 + 18 NA TTS (FBgn0035267) protein_coding-TTS (FBgn0035267) 2985 FBgn0022702 FBgn0022702 FBtr0072795 Cht2 protein_coding FLAG-S2-jox2017_R1_peak_1387 chrX 7808945 7809084 + 18 NA exon (FBgn0029976, exon 7 of 11) protein_coding-exon (FBgn0029976, exon 7 of 11) 2892 FBgn0029976 FBgn0029976 FBtr0071092 snz protein_coding FLAG-S2-jox2017_R1_peak_324 chr2R 8780361 8780517 + 18 NA exon (FBgn0003975, exon 4 of 8) protein_coding-exon (FBgn0003975, exon 4 of 8) 8733 FBgn0003975 FBgn0003975 FBtr0087785 vg protein_coding FLAG-S2-jox2017_R1_peak_1324 chrUextra 28957010 28957376 + 18 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_413 chr2R 18137407 18137546 + 18 NA intron (FBgn0020307, intron 1 of 5) protein_coding-intron (FBgn0020307, intron 1 of 5) -20949 FBgn0020307 FBgn0020307 FBtr0071776 dve protein_coding FLAG-S2-jox2017_R1_peak_1381 chrX 6737293 6737487 + 18 NA promoter-TSS (FBgn0029912) protein_coding-promoter-TSS (FBgn0029912) 563 FBgn0029911 FBgn0029911 FBtr0300880 CG14435 protein_coding FLAG-S2-jox2017_R1_peak_672 chr3L 22010849 22011026 + 18 NA Intergenic Intergenic 10488 FBgn0037147 FBgn0037147 FBtr0114546 CG7140 protein_coding FLAG-S2-jox2017_R1_peak_997 chr3RHet 907911 908067 + 18 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_379 chr2R 15432344 15432538 + 18 NA intron (FBgn0003435, intron 5 of 9) protein_coding-intron (FBgn0003435, intron 5 of 9) -7135 FBgn0262571 FBgn0262571 FBtr0304898 CG43111 protein_coding FLAG-S2-jox2017_R1_peak_1367 chrX 5244297 5244519 + 18 NA intron (FBgn0029761, intron 2 of 14) protein_coding-intron (FBgn0029761, intron 2 of 10) 10139 FBgn0029761 FBgn0029761 FBtr0301952 SK protein_coding FLAG-S2-jox2017_R1_peak_1412 chrX 11923901 11924148 + 18 NA promoter-TSS (FBgn0030366) protein_coding-promoter-TSS (FBgn0030366) -963 FBgn0030366 FBgn0030366 FBtr0073641 Usp7 protein_coding FLAG-S2-jox2017_R1_peak_912 chr3R 21024580 21024719 + 18 NA promoter-TSS (FBgn0039290) protein_coding-promoter-TSS (FBgn0039290) -891 FBgn0039290 FBgn0039290 FBtr0084805 CG13654 protein_coding FLAG-S2-jox2017_R1_peak_1037 chrUextra 228464 228638 + 18 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_199 chr2L 21102869 21103008 + 18 NA promoter-TSS (FBgn0032915) protein_coding-promoter-TSS (FBgn0032915) 199 FBgn0032916 FBgn0032916 FBtr0081465 CG9257 protein_coding FLAG-S2-jox2017_R1_peak_361 chr2R 13760554 13760741 + 18 NA promoter-TSS (FBgn0011589) protein_coding-promoter-TSS (FBgn0011589) -805 FBgn0011589 FBgn0011589 FBtr0086802 elk protein_coding FLAG-S2-jox2017_R1_peak_425 chr2R 19433533 19433810 + 18 NA intron (FBgn0034876, intron 2 of 3) protein_coding-intron (FBgn0034876, intron 1 of 2) 1932 FBgn0034876 FBgn0034876 FBtr0072114 wmd protein_coding FLAG-S2-jox2017_R1_peak_53 chr2L 6034979 6035143 + 18 NA promoter-TSS (FBgn0031765) protein_coding-promoter-TSS (FBgn0031765) -638 FBgn0031765 FBgn0031765 FBtr0100665 CG9109 protein_coding FLAG-S2-jox2017_R1_peak_327 chr2R 8878537 8878790 + 18 NA Intergenic Intergenic -2739 FBgn0053798 FBgn0053798 FBtr0091802 CG33798 protein_coding FLAG-S2-jox2017_R1_peak_975 chr3R 26667866 26668005 + 18 NA TTS (FBgn0039804) protein_coding-TTS (FBgn0039804) -10102 FBgn0003720 FBgn0003720 FBtr0085709 tll protein_coding FLAG-S2-jox2017_R1_peak_735 chr3R 3321096 3321235 + 18 NA exon (FBgn0015577, exon 5 of 5) protein_coding-exon (FBgn0015577, exon 5 of 5) -2172 FBgn0261508 FBgn0261508 FBtr0302437 CG42656 protein_coding FLAG-S2-jox2017_R1_peak_838 chr3R 13901031 13901170 + 18 NA Intergenic Intergenic -5743 FBgn0038566 FBgn0038566 FBtr0083541 CG14317 protein_coding FLAG-S2-jox2017_R1_peak_588 chr3L 13957464 13957603 + 18 NA promoter-TSS (FBgn0036389) protein_coding-promoter-TSS (FBgn0036389) 269 FBgn0025874 FBgn0025874 FBtr0333030 Meics protein_coding FLAG-S2-jox2017_R1_peak_214 chr2R 445428 445801 + 18 NA intron (FBgn0046692, intron 1 of 3) protein_coding-intron (FBgn0046692, intron 1 of 3) 11433 FBgn0046692 FBgn0046692 FBtr0308810 Stlk protein_coding FLAG-S2-jox2017_R1_peak_197 chr2L 20831439 20831698 + 18 NA TTS (FBgn0051673) protein_coding-TTS (FBgn0051673) 306 FBgn0051674 FBgn0051674 FBtr0081423 CG31674 protein_coding FLAG-S2-jox2017_R1_peak_746 chr3R 4142534 4142701 + 18 NA promoter-TSS (FBgn0062412) protein_coding-promoter-TSS (FBgn0062412) -400 FBgn0037574 FBgn0037574 FBtr0081858 Coq2 protein_coding FLAG-S2-jox2017_R1_peak_1436 chrX 16160339 16160478 + 18 NA TTS (FBgn0040207) protein_coding-TTS (FBgn0040207) 119 FBgn0030729 FBgn0030729 FBtr0290087 CG12507 protein_coding FLAG-S2-jox2017_R1_peak_1266 chrUextra 28756732 28756965 + 18 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_592 chr3L 14140785 14140969 + 18 NA Intergenic Intergenic -16480 FBgn0042630 FBgn0042630 FBtr0330116 Sox21b protein_coding FLAG-S2-jox2017_R1_peak_304 chr2R 7244163 7244540 + 18 NA promoter-TSS (FBgn0033623) protein_coding-promoter-TSS (FBgn0033623) 126 FBgn0015001 FBgn0015001 FBtr0088125 iotaTry protein_coding FLAG-S2-jox2017_R1_peak_1460 chrX 20333447 20333586 + 18 NA exon (FBgn0052506, exon 4 of 9) protein_coding-exon (FBgn0052506, exon 4 of 9) -5191 FBgn0031117 FBgn0031117 FBtr0077310 CG1702 protein_coding FLAG-S2-jox2017_R1_peak_120 chr2L 13504977 13505116 + 18 NA exon (FBgn0023407, exon 7 of 7) protein_coding-exon (FBgn0023407, exon 7 of 7) -22795 FBgn0053640 FBgn0053640 FBtr0332506 CG33640 protein_coding FLAG-S2-jox2017_R1_peak_851 chr3R 14766096 14766235 + 17 NA intron (FBgn0261262, intron 3 of 17) protein_coding-intron (FBgn0261262, intron 3 of 18) -9753 FBgn0263983 FBgn0263983 FBtr0330024 CG43732 protein_coding FLAG-S2-jox2017_R1_peak_620 chr3L 16828535 16828702 + 17 NA Intergenic Intergenic -6444 FBgn0036665 FBgn0036665 FBtr0273320 CG13024 protein_coding FLAG-S2-jox2017_R1_peak_1071 chrUextra 8756447 8756709 + 17 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_70 chr2L 7148757 7149146 + 17 NA intron (FBgn0085407, intron 1 of 5) protein_coding-intron (FBgn0085407, intron 1 of 5) -15424 FBgn0085407 FBgn0085407 FBtr0301525 Pvf3 protein_coding FLAG-S2-jox2017_R1_peak_487 chr3L 2990762 2991001 + 17 NA Intergenic Intergenic -4291 FBgn0035384 FBgn0035384 FBtr0332084 CG2113 protein_coding FLAG-S2-jox2017_R1_peak_939 chr3R 22863910 22864077 + 17 NA intron (FBgn0004842, intron 4 of 7) protein_coding-intron (FBgn0004842, intron 4 of 7) -10949 FBgn0029170 FBgn0029170 FBtr0085101 TwdlT protein_coding FLAG-S2-jox2017_R1_peak_1285 chrUextra 28839153 28839383 + 17 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_565 chr3L 11485786 11485931 + 17 NA intron (FBgn0036165, intron 1 of 3) protein_coding-intron (FBgn0036165, intron 1 of 3) 5208 FBgn0036165 FBgn0036165 FBtr0076093 chrb protein_coding FLAG-S2-jox2017_R1_peak_1449 chrX 18557907 18558145 + 17 NA Intergenic Intergenic -1840 FBgn0030947 FBgn0030947 FBtr0074611 CG6696 protein_coding FLAG-S2-jox2017_R1_peak_412 chr2R 18071975 18072114 + 17 NA exon (FBgn0034707, exon 1 of 1) protein_coding-exon (FBgn0034707, exon 1 of 1) 1392 FBgn0034707 FBgn0034707 FBtr0071770 MED16 protein_coding FLAG-S2-jox2017_R1_peak_664 chr3L 20919366 20919505 + 17 NA exon (FBgn0011591, exon 7 of 7) protein_coding-exon (FBgn0011591, exon 7 of 7) -1491 FBgn0037035 FBgn0037035 FBtr0078266 CG10589 protein_coding FLAG-S2-jox2017_R1_peak_42 chr2L 5034174 5034313 + 17 NA exon (FBgn0000299, exon 7 of 9) protein_coding-exon (FBgn0000299, exon 7 of 9) -3810 FBgn0260451 FBgn0260451 FBtr0110984 CG14042 protein_coding FLAG-S2-jox2017_R1_peak_1176 chrUextra 27320204 27320426 + 17 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_697 chr3R 256705 256896 + 17 NA exon (FBgn0037249, exon 3 of 4) protein_coding-exon (FBgn0037249, exon 3 of 4) -1749 FBgn0037248 FBgn0037248 FBtr0301244 Spargel protein_coding FLAG-S2-jox2017_R1_peak_323 chr2R 8580588 8580870 + 17 NA promoter-TSS (FBgn0033769) protein_coding-promoter-TSS (FBgn0033769) -536 FBgn0033769 FBgn0033769 FBtr0087871 CG8768 protein_coding FLAG-S2-jox2017_R1_peak_1207 chrUextra 28244944 28245168 + 17 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_256 chr2R 3794803 3794942 + 17 NA exon (FBgn0050377, exon 4 of 5) protein_coding-exon (FBgn0050377, exon 4 of 5) 9096 FBgn0033232 FBgn0033232 FBtr0088888 CG12159 protein_coding FLAG-S2-jox2017_R1_peak_941 chr3R 23117418 23117559 + 17 NA TTS (FBgn0015737) protein_coding-TTS (FBgn0015737) 423 FBgn0040609 FBgn0040609 FBtr0085172 CG3348 protein_coding FLAG-S2-jox2017_R1_peak_139 chr2L 15864217 15864356 + 17 NA TTS (FBgn0261924) protein_coding-TTS (FBgn0261924) 1024 FBgn0261924 FBgn0261924 FBtr0303588 CG42791 protein_coding FLAG-S2-jox2017_R1_peak_402 chr2R 17058827 17059022 + 17 NA promoter-TSS (FBgn0261067) protein_coding-promoter-TSS (FBgn0261067) 407 FBgn0261850 FBgn0261850 FBtr0071577 Xpd protein_coding FLAG-S2-jox2017_R1_peak_449 chr2RHet 2773706 2773845 + 17 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_805 chr3R 11038522 11038881 + 17 NA promoter-TSS (FBgn0038302) protein_coding-promoter-TSS (FBgn0038302) 679 FBgn0038301 FBgn0038301 FBtr0083139 CG6654 protein_coding FLAG-S2-jox2017_R1_peak_508 chr3L 5005189 5005328 + 17 NA intron (FBgn0005775, intron 3 of 7) protein_coding-intron (FBgn0005775, intron 3 of 7) 6875 FBgn0035585 FBgn0035585 FBtr0073372 CG12027 protein_coding FLAG-S2-jox2017_R1_peak_1380 chrX 6714201 6714340 + 17 NA promoter-TSS (FBgn0029906) protein_coding-promoter-TSS (FBgn0029906) 678 FBgn0029905 FBgn0029905 FBtr0070974 Nf-YC protein_coding FLAG-S2-jox2017_R1_peak_760 chr3R 5844690 5845065 + 17 NA exon (FBgn0053208, exon 7 of 8) protein_coding-exon (FBgn0053208, exon 7 of 8) 4453 FBgn0051407 FBgn0051407 FBtr0082214 CG31407 protein_coding FLAG-S2-jox2017_R1_peak_700 chr3R 596649 596926 + 17 NA intron (FBgn0051530, intron 1 of 4) protein_coding-intron (FBgn0051530, intron 1 of 4) 2020 FBgn0051530 FBgn0051530 FBtr0078882 CG31530 protein_coding FLAG-S2-jox2017_R1_peak_894 chr3R 18925446 18925762 + 17 NA TTS (FBgn0039052) protein_coding-TTS (FBgn0039052) 346 FBgn0039053 FBgn0039053 FBtr0084353 CG6738 protein_coding FLAG-S2-jox2017_R1_peak_224 chr2R 1636100 1636276 + 17 NA Intergenic Intergenic -5845 FBgn0022288 FBgn0022288 FBtr0086043 l(2)09851 protein_coding FLAG-S2-jox2017_R1_peak_916 chr3R 21147821 21147961 + 17 NA TTS (FBgn0045761) protein_coding-TTS (FBgn0045761) 582 FBgn0039326 FBgn0039326 FBtr0084851 CG10562 protein_coding FLAG-S2-jox2017_R1_peak_922 chr3R 21793743 21793889 + 17 NA Intergenic Intergenic -4478 FBgn0259146 FBgn0259146 FBtr0299575 CG42261 protein_coding FLAG-S2-jox2017_R1_peak_1032 chrU 9598964 9599198 + 17 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1375 chrX 5982939 5983088 + 17 NA exon (FBgn0029840, exon 1 of 5) protein_coding-exon (FBgn0029840, exon 1 of 5) 1221 FBgn0029840 FBgn0029840 FBtr0332964 raptor protein_coding FLAG-S2-jox2017_R1_peak_571 chr3L 11842103 11842252 + 17 NA Intergenic Intergenic -1274 FBgn0040816 FBgn0040816 FBtr0076074 CG12521 protein_coding FLAG-S2-jox2017_R1_peak_311 chr2R 7758112 7758261 + 17 NA exon (FBgn0033661, exon 8 of 13) protein_coding-exon (FBgn0033661, exon 8 of 13) 3738 FBgn0260437 FBgn0260437 FBtr0300860 CR42532 pseudogene FLAG-S2-jox2017_R1_peak_326 chr2R 8836696 8836987 + 17 NA exon (FBgn0033786, exon 2 of 2) protein_coding-exon (FBgn0033786, exon 2 of 2) 2950 FBgn0033786 FBgn0033786 FBtr0302321 CG3884 protein_coding FLAG-S2-jox2017_R1_peak_1019 chrU 1394047 1394186 + 17 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1 chr2L 153295 153442 + 17 NA promoter-TSS (FBgn0259818) protein_coding-promoter-TSS (FBgn0259818) -80 FBgn0259818 FBgn0259818 FBtr0330643 CG42399 protein_coding FLAG-S2-jox2017_R1_peak_350 chr2R 12376296 12376435 + 17 NA exon (FBgn0053459, exon 4 of 4) protein_coding-exon (FBgn0053459, exon 4 of 4) 807 FBgn0053459 FBgn0053459 FBtr0089859 CG33459 protein_coding FLAG-S2-jox2017_R1_peak_595 chr3L 14444866 14445014 + 17 NA intron (FBgn0087007, intron 4 of 8) protein_coding-intron (FBgn0087007, intron 4 of 8) 41214 FBgn0036423 FBgn0036423 FBtr0333040 CG3919 protein_coding FLAG-S2-jox2017_R1_peak_1409 chrX 10889857 10890079 + 17 NA intron (FBgn0259241, intron 2 of 5) protein_coding-intron (FBgn0259241, intron 2 of 5) -28801 FBgn0021742 FBgn0021742 FBtr0073400 C901 protein_coding FLAG-S2-jox2017_R1_peak_257 chr2R 4005126 4005265 + 17 NA exon (FBgn0050372, exon 7 of 12) protein_coding-exon (FBgn0050372, exon 7 of 12) 5161 FBgn0050372 FBgn0050372 FBtr0100140 Asap1 protein_coding FLAG-S2-jox2017_R1_peak_576 chr3L 12362132 12362354 + 17 NA exon (FBgn0036279, exon 16 of 17) protein_coding-exon (FBgn0036279, exon 16 of 17) -17599 FBgn0036278 FBgn0036278 FBtr0330069 GRHRII protein_coding FLAG-S2-jox2017_R1_peak_376 chr2R 15327756 15328122 + 17 NA intron (FBgn0040273, intron 10 of 11) protein_coding-intron (FBgn0040273, intron 10 of 11) -1915 FBgn0013325 FBgn0013325 FBtr0086533 RpL11 protein_coding FLAG-S2-jox2017_R1_peak_933 chr3R 22440652 22440791 + 17 NA Intergenic Intergenic -4124 FBgn0039434 FBgn0039434 FBtr0085029 TwdlM protein_coding FLAG-S2-jox2017_R1_peak_317 chr2R 8235547 8235719 + 17 NA exon (FBgn0033718, exon 1 of 2) protein_coding-exon (FBgn0033718, exon 1 of 2) 3042 FBgn0033718 FBgn0033718 FBtr0087904 ana3 protein_coding FLAG-S2-jox2017_R1_peak_315 chr2R 7923108 7923278 + 17 NA TTS (FBgn0262820) protein_coding-TTS (FBgn0262820) 1477 FBgn0262820 FBgn0262820 FBtr0306063 CG43191 protein_coding FLAG-S2-jox2017_R1_peak_1294 chrUextra 28863889 28864115 + 17 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_973 chr3R 26329901 26330040 + 17 NA promoter-TSS (FBgn0051371) protein_coding-promoter-TSS (FBgn0051371) -888 FBgn0051371 FBgn0051371 FBtr0307535 CG31371 protein_coding FLAG-S2-jox2017_R1_peak_1254 chrUextra 28718544 28718776 + 17 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_609 chr3L 15983607 15983746 + 17 NA exon (FBgn0259824, exon 4 of 4) protein_coding-exon (FBgn0259824, exon 4 of 4) 2340 FBgn0259824 FBgn0259824 FBtr0330161 Hip14 protein_coding FLAG-S2-jox2017_R1_peak_541 chr3L 8739482 8739621 + 17 NA Intergenic Intergenic 3275 FBgn0040828 FBgn0040828 FBtr0076592 CG13306 protein_coding FLAG-S2-jox2017_R1_peak_272 chr2R 4618820 4618959 + 17 NA exon (FBgn0086784, exon 6 of 8) protein_coding-exon (FBgn0086784, exon 6 of 8) -1882 FBgn0050356 FBgn0050356 FBtr0088717 CG30356 protein_coding FLAG-S2-jox2017_R1_peak_1236 chrUextra 28586143 28586372 + 17 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_90 chr2L 10383094 10383233 + 17 NA TTS (FBgn0032234) protein_coding-TTS (FBgn0032234) 900 FBgn0032235 FBgn0032235 FBtr0080006 CG5096 protein_coding FLAG-S2-jox2017_R1_peak_300 chr2R 6909511 6909722 + 17 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -63475 FBgn0262817 FBgn0262817 FBtr0306049 CG43188 protein_coding FLAG-S2-jox2017_R1_peak_676 chr3L 22333405 22333544 + 17 NA intron (FBgn0004449, intron 2 of 11) protein_coding-intron (FBgn0004449, intron 2 of 8) 10596 FBgn0052450 FBgn0052450 FBtr0078501 CG32450 protein_coding FLAG-S2-jox2017_R1_peak_66 chr2L 6855352 6855691 + 17 NA intron (FBgn0086451, intron 1 of 3) protein_coding-intron (FBgn0086451, intron 1 of 3) 1351 FBgn0086451 FBgn0086451 FBtr0079343 l(2)k09022 protein_coding FLAG-S2-jox2017_R1_peak_872 chr3R 16465093 16465232 + 17 NA exon (FBgn0038816, exon 4 of 11) protein_coding-exon (FBgn0038816, exon 4 of 11) 3252 FBgn0038816 FBgn0038816 FBtr0112788 Lrrk protein_coding FLAG-S2-jox2017_R1_peak_892 chr3R 18747545 18747684 + 17 NA intron (FBgn0017590, intron 2 of 10) protein_coding-intron (FBgn0017590, intron 2 of 10) -1460 FBgn0039030 FBgn0039030 FBtr0084338 CG6660 protein_coding FLAG-S2-jox2017_R1_peak_1081 chrUextra 10143718 10143943 + 17 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1435 chrX 16052348 16052487 + 17 NA Intergenic Intergenic 32907 FBgn0262283 FBgn0262283 FBtr0304409 mir-985 pre_miRNA FLAG-S2-jox2017_R1_peak_488 chr3L 3021151 3021290 + 17 NA Intergenic Intergenic -3964 FBgn0052487 FBgn0052487 FBtr0073007 CG32487 protein_coding FLAG-S2-jox2017_R1_peak_420 chr2R 19183454 19183806 + 17 NA Intergenic Intergenic 11827 FBgn0034841 FBgn0034841 FBtr0072001 CG13541 protein_coding FLAG-S2-jox2017_R1_peak_736 chr3R 3360848 3361101 + 17 NA exon (FBgn0261393, exon 4 of 5) protein_coding-exon (FBgn0261393, exon 4 of 5) 1273 FBgn0261393 FBgn0261393 FBtr0081547 alpha-Est5 protein_coding FLAG-S2-jox2017_R1_peak_1137 chrUextra 22410299 22410438 + 17 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_253 chr2R 3527460 3527797 + 17 NA exon (FBgn0263077, exon 9 of 15) protein_coding-exon (FBgn0263077, exon 9 of 15) 1006 FBgn0263077 FBgn0263077 FBtr0331952 CG43340 protein_coding FLAG-S2-jox2017_R1_peak_556 chr3L 10431841 10432087 + 17 NA Intergenic Intergenic -4759 FBgn0052058 FBgn0052058 FBtr0076293 Ir67c protein_coding FLAG-S2-jox2017_R1_peak_447 chr2RHet 89903 90273 + 17 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_52 chr2L 5856961 5857115 + 17 NA TTS (FBgn0085410) protein_coding-TTS (FBgn0085410) 22443 FBgn0031745 FBgn0031745 FBtr0079158 CG8965 protein_coding FLAG-S2-jox2017_R1_peak_314 chr2R 7920150 7920382 + 17 NA exon (FBgn0260012, exon 13 of 14) protein_coding-exon (FBgn0260012, exon 13 of 14) -1187 FBgn0033677 FBgn0033677 FBtr0087975 CG8321 protein_coding FLAG-S2-jox2017_R1_peak_1148 chrUextra 24203399 24203629 + 17 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_368 chr2R 14516261 14516412 + 17 NA exon (FBgn0000566, exon 1 of 1) protein_coding-exon (FBgn0000566, exon 1 of 1) 937 FBgn0000566 FBgn0000566 FBtr0086710 Eip55E protein_coding FLAG-S2-jox2017_R1_peak_198 chr2L 21097273 21097427 + 17 NA intron (FBgn0083972, intron 1 of 1) protein_coding-intron (FBgn0083972, intron 1 of 1) 428 FBgn0083972 FBgn0083972 FBtr0110944 CG34136 protein_coding FLAG-S2-jox2017_R1_peak_770 chr3R 6593220 6593359 + 17 NA TTS (FBgn0037831) protein_coding-TTS (FBgn0037831) 379 FBgn0010421 FBgn0010421 FBtr0082310 TfIIFbeta protein_coding FLAG-S2-jox2017_R1_peak_740 chr3R 3849192 3849514 + 17 NA exon (FBgn0037541, exon 3 of 7) protein_coding-exon (FBgn0037541, exon 3 of 7) 5915 FBgn0001255 FBgn0001255 FBtr0310412 ImpE3 protein_coding FLAG-S2-jox2017_R1_peak_989 chr3R 27418828 27418986 + 17 NA TTS (FBgn0039855) protein_coding-TTS (FBgn0039855) 441 FBgn0039856 FBgn0039856 FBtr0085798 CG1774 protein_coding FLAG-S2-jox2017_R1_peak_747 chr3R 4211825 4211964 + 17 NA exon (FBgn0051462, exon 1 of 1) protein_coding-exon (FBgn0051462, exon 1 of 1) 2030 FBgn0051462 FBgn0051462 FBtr0081851 CG31462 protein_coding FLAG-S2-jox2017_R1_peak_775 chr3R 7716735 7717002 + 17 NA exon (FBgn0051368, exon 6 of 8) protein_coding-exon (FBgn0051368, exon 6 of 8) 2151 FBgn0037962 FBgn0037962 FBtr0082514 CG6971 protein_coding FLAG-S2-jox2017_R1_peak_520 chr3L 6388300 6388439 + 17 NA Intergenic Intergenic -5323 FBgn0261801 FBgn0261801 FBtr0303270 CG42747 protein_coding FLAG-S2-jox2017_R1_peak_192 chr2L 20650592 20650731 + 17 NA TTS (FBgn0042133) protein_coding-TTS (FBgn0042133) 467 FBgn0032871 FBgn0032871 FBtr0081387 CG2611 protein_coding FLAG-S2-jox2017_R1_peak_855 chr3R 15262799 15263128 + 17 NA intron (FBgn0051221, intron 2 of 4) protein_coding-intron (FBgn0051221, intron 2 of 4) -12042 FBgn0038706 FBgn0038706 FBtr0083770 CG3517 protein_coding FLAG-S2-jox2017_R1_peak_659 chr3L 20385269 20385445 + 17 NA promoter-TSS (FBgn0264572) ncRNA-promoter-TSS (FBgn0264572) -870 FBgn0264572 FBgn0264572 FBtr0333481 CR43944 ncRNA FLAG-S2-jox2017_R1_peak_71 chr2L 7653834 7654015 + 17 NA intron (FBgn0264087, intron 5 of 12) protein_coding-intron (FBgn0264087, intron 5 of 12) 20759 FBgn0264087 FBgn0264087 FBtr0330703 Slob protein_coding FLAG-S2-jox2017_R1_peak_102 chr2L 11514630 11514769 + 17 NA exon (FBgn0032363, exon 3 of 10) protein_coding-exon (FBgn0032363, exon 3 of 10) 2336 FBgn0032363 FBgn0032363 FBtr0080247 CG6509 protein_coding FLAG-S2-jox2017_R1_peak_756 chr3R 5383492 5383631 + 16 NA TTS (FBgn0037709) protein_coding-TTS (FBgn0037709) 1684 FBgn0024833 FBgn0024833 FBtr0082114 AP-47 protein_coding FLAG-S2-jox2017_R1_peak_557 chr3L 10674033 10674218 + 16 NA intron (FBgn0010762, intron 1 of 8) protein_coding-intron (FBgn0010762, intron 2 of 9) -9999 FBgn0036099 FBgn0036099 FBtr0076265 CG11811 protein_coding FLAG-S2-jox2017_R1_peak_496 chr3L 4051125 4051264 + 16 NA intron (FBgn0035490, intron 1 of 3) protein_coding-intron (FBgn0035490, intron 1 of 3) -3459 FBgn0035491 FBgn0035491 FBtr0073281 Dpy-30L2 protein_coding FLAG-S2-jox2017_R1_peak_737 chr3R 3636011 3636150 + 16 NA promoter-TSS (FBgn0051472) protein_coding-promoter-TSS (FBgn0051472) -174 FBgn0051472 FBgn0051472 FBtr0081747 CG31472 protein_coding FLAG-S2-jox2017_R1_peak_988 chr3R 27330777 27330972 + 16 NA exon (FBgn0039851, exon 5 of 7) protein_coding-exon (FBgn0039851, exon 5 of 7) 5913 FBgn0039851 FBgn0039851 FBtr0085790 mey protein_coding FLAG-S2-jox2017_R1_peak_426 chr2R 19780293 19780633 + 16 NA TTS (FBgn0034923) protein_coding-TTS (FBgn0034923) 2047 FBgn0034923 FBgn0034923 FBtr0072221 Upf3 protein_coding FLAG-S2-jox2017_R1_peak_893 chr3R 18888129 18888327 + 16 NA TTS (FBgn0039048) protein_coding-TTS (FBgn0039048) 1011 FBgn0027526 FBgn0027526 FBtr0084347 Ublcp1 protein_coding FLAG-S2-jox2017_R1_peak_16 chr2L 2595040 2595179 + 16 NA Intergenic Intergenic 6255 FBgn0250835 FBgn0250835 FBtr0113016 CG15394 protein_coding FLAG-S2-jox2017_R1_peak_590 chr3L 13989095 13989303 + 16 NA exon (FBgn0250848, exon 3 of 3) protein_coding-exon (FBgn0250848, exon 3 of 3) -1092 FBgn0036395 FBgn0036395 FBtr0075767 CG17361 protein_coding FLAG-S2-jox2017_R1_peak_246 chr2R 3228375 3228546 + 16 NA exon (FBgn0033159, exon 9 of 24) protein_coding-exon (FBgn0033159, exon 9 of 24) 29547 FBgn0033158 FBgn0033158 FBtr0088963 CG12164 protein_coding FLAG-S2-jox2017_R1_peak_345 chr2R 11447811 11448255 + 16 NA promoter-TSS (FBgn0034031) protein_coding-promoter-TSS (FBgn0034031) 3600 FBgn0034031 FBgn0034031 FBtr0306572 CG12963 protein_coding FLAG-S2-jox2017_R1_peak_729 chr3R 2980233 2980372 + 16 NA TTS (FBgn0011020) protein_coding-TTS (FBgn0011020) 596 FBgn0037481 FBgn0037481 FBtr0081606 MAGE protein_coding FLAG-S2-jox2017_R1_peak_505 chr3L 4650383 4650704 + 16 NA TTS (FBgn0052238) protein_coding-TTS (FBgn0052238) 2267 FBgn0052238 FBgn0052238 FBtr0073344 CG32238 protein_coding FLAG-S2-jox2017_R1_peak_654 chr3L 20267171 20267428 + 16 NA exon (FBgn0036962, exon 1 of 1) protein_coding-exon (FBgn0036962, exon 1 of 1) 1136 FBgn0036962 FBgn0036962 FBtr0074849 CG17122 protein_coding FLAG-S2-jox2017_R1_peak_1009 chr4 1049414 1049553 + 16 NA TTS (FBgn0039929) protein_coding-TTS (FBgn0039929) 513 FBgn0039930 FBgn0039930 FBtr0089222 CG11077 protein_coding FLAG-S2-jox2017_R1_peak_1287 chrUextra 28844388 28844815 + 16 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1024 chrU 2419646 2419785 + 16 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_930 chr3R 22166858 22166997 + 16 NA intron (FBgn0053970, intron 2 of 8) protein_coding-intron (FBgn0053970, intron 2 of 8) 4268 FBgn0039421 FBgn0039421 FBtr0085027 CG6036 protein_coding FLAG-S2-jox2017_R1_peak_718 chr3R 1458598 1458805 + 16 NA promoter-TSS (FBgn0037354) protein_coding-promoter-TSS (FBgn0037354) -645 FBgn0037354 FBgn0037354 FBtr0078708 CG12171 protein_coding FLAG-S2-jox2017_R1_peak_1171 chrUextra 26756316 26756545 + 16 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_949 chr3R 23793171 23793310 + 16 NA TTS (FBgn0039566) protein_coding-TTS (FBgn0039566) 4102 FBgn0039566 FBgn0039566 FBtr0085257 CG4849 protein_coding FLAG-S2-jox2017_R1_peak_731 chr3R 3079581 3079743 + 16 NA exon (FBgn0001112, exon 4 of 4) protein_coding-exon (FBgn0001112, exon 4 of 4) -1983 FBgn0011282 FBgn0011282 FBtr0081597 Pbprp4 protein_coding FLAG-S2-jox2017_R1_peak_1222 chrUextra 28479153 28479294 + 16 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_813 chr3R 11413086 11413225 + 16 NA Intergenic Intergenic -34661 FBgn0038350 FBgn0038350 FBtr0083150 CG18516 protein_coding FLAG-S2-jox2017_R1_peak_698 chr3R 297993 298150 + 16 NA promoter-TSS (FBgn0051523) protein_coding-promoter-TSS (FBgn0051523) -3716 FBgn0051523 FBgn0051523 FBtr0078938 CG31523 protein_coding FLAG-S2-jox2017_R1_peak_1377 chrX 6467425 6467637 + 16 NA intron (FBgn0085446, intron 1 of 7) protein_coding-intron (FBgn0085446, intron 8 of 14) 1575 FBgn0085446 FBgn0085446 FBtr0308093 CG34417 protein_coding FLAG-S2-jox2017_R1_peak_533 chr3L 8305436 8305777 + 16 NA exon (FBgn0035872, exon 4 of 7) protein_coding-exon (FBgn0035872, exon 4 of 7) 2996 FBgn0035872 FBgn0035872 FBtr0304628 CG7185 protein_coding FLAG-S2-jox2017_R1_peak_1361 chrX 4465172 4465354 + 16 NA exon (FBgn0029717, exon 2 of 2) protein_coding-exon (FBgn0029717, exon 2 of 2) 699 FBgn0029717 FBgn0029717 FBtr0070697 CG12684 protein_coding FLAG-S2-jox2017_R1_peak_921 chr3R 21502400 21502559 + 16 NA TTS (FBgn0039355) protein_coding-TTS (FBgn0039355) 1925 FBgn0039355 FBgn0039355 FBtr0331364 CG4730 protein_coding FLAG-S2-jox2017_R1_peak_308 chr2R 7341748 7341913 + 16 NA exon (FBgn0000581, exon 2 of 11) protein_coding-exon (FBgn0000581, exon 2 of 11) 2282 FBgn0000581 FBgn0000581 FBtr0088140 E(Pc) protein_coding FLAG-S2-jox2017_R1_peak_38 chr2L 4681330 4681624 + 16 NA Intergenic Intergenic -1200 FBgn0031620 FBgn0031620 FBtr0077377 CG11929 protein_coding FLAG-S2-jox2017_R1_peak_1401 chrX 10151541 10151680 + 16 NA promoter-TSS (FBgn0263220) protein_coding-promoter-TSS (FBgn0263220) 948 FBgn0264674 FBgn0264674 FBtr0333763 CR43959 ncRNA FLAG-S2-jox2017_R1_peak_335 chr2R 9912797 9912936 + 16 NA intron (FBgn0002643, intron 2 of 5) protein_coding-intron (FBgn0002643, intron 3 of 6) -3257 FBgn0033893 FBgn0033893 FBtr0087599 CG18371 protein_coding FLAG-S2-jox2017_R1_peak_267 chr2R 4351587 4351769 + 16 NA promoter-TSS (FBgn0050360) protein_coding-promoter-TSS (FBgn0050360) -997 FBgn0050360 FBgn0050360 FBtr0273322 Mal-A6 protein_coding FLAG-S2-jox2017_R1_peak_655 chr3L 20271601 20271866 + 16 NA exon (FBgn0052227, exon 3 of 10) protein_coding-exon (FBgn0052227, exon 3 of 10) -3298 FBgn0036962 FBgn0036962 FBtr0074849 CG17122 protein_coding FLAG-S2-jox2017_R1_peak_648 chr3L 19601942 19602090 + 16 NA TTS (FBgn0036891) protein_coding-TTS (FBgn0036891) 2708 FBgn0036891 FBgn0036891 FBtr0074945 CG9372 protein_coding FLAG-S2-jox2017_R1_peak_1248 chrUextra 28666953 28667179 + 16 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_374 chr2R 15055747 15056051 + 16 NA intron (FBgn0034420, intron 2 of 16) protein_coding-intron (FBgn0034420, intron 1 of 14) -1746 FBgn0034420 FBgn0034420 FBtr0290318 CG10737 protein_coding FLAG-S2-jox2017_R1_peak_661 chr3L 20514476 20514623 + 16 NA promoter-TSS (FBgn0037008) protein_coding-promoter-TSS (FBgn0037008) 440 FBgn0037009 FBgn0037009 FBtr0078209 CG5104 protein_coding FLAG-S2-jox2017_R1_peak_1100 chrUextra 13533184 13533415 + 16 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_245 chr2R 3223316 3223562 + 16 NA exon (FBgn0033159, exon 9 of 24) protein_coding-exon (FBgn0033159, exon 9 of 24) 24526 FBgn0033158 FBgn0033158 FBtr0088963 CG12164 protein_coding FLAG-S2-jox2017_R1_peak_985 chr3R 27119767 27119906 + 16 NA Intergenic Intergenic 11126 FBgn0039840 FBgn0039840 FBtr0085766 CG11340 protein_coding FLAG-S2-jox2017_R1_peak_863 chr3R 15639933 15640370 + 16 NA intron (FBgn0014135, intron 2 of 4) protein_coding-intron (FBgn0014135, intron 2 of 4) 11739 FBgn0051471 FBgn0051471 FBtr0083794 tRNA:CR31471 tRNA FLAG-S2-jox2017_R1_peak_266 chr2R 4346775 4347053 + 16 NA exon (FBgn0033294, exon 1 of 5) protein_coding-exon (FBgn0033294, exon 1 of 5) 585 FBgn0033294 FBgn0033294 FBtr0088748 Mal-A4 protein_coding FLAG-S2-jox2017_R1_peak_173 chr2L 19130936 19131075 + 16 NA exon (FBgn0086443, exon 2 of 2) protein_coding-exon (FBgn0086443, exon 2 of 2) 949 FBgn0086443 FBgn0086443 FBtr0081162 Aats-asn protein_coding FLAG-S2-jox2017_R1_peak_352 chr2R 12834193 12834417 + 16 NA TTS (FBgn0262513) protein_coding-TTS (FBgn0262513) 754 FBgn0085219 FBgn0085219 FBtr0112383 CG34190 protein_coding FLAG-S2-jox2017_R1_peak_1276 chrUextra 28807667 28807908 + 16 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1006 chr4 529046 529325 + 16 NA intron (FBgn0004607, intron 2 of 12) protein_coding-intron (FBgn0004607, intron 2 of 13) 6749 FBgn0004607 FBgn0004607 FBtr0332913 zfh2 protein_coding FLAG-S2-jox2017_R1_peak_137 chr2L 15728964 15729200 + 16 NA exon (FBgn0010382, exon 6 of 6) protein_coding-exon (FBgn0010382, exon 6 of 6) 17527 FBgn0010382 FBgn0010382 FBtr0080777 CycE protein_coding FLAG-S2-jox2017_R1_peak_191 chr2L 20416315 20416454 + 16 NA promoter-TSS (FBgn0032859) protein_coding-promoter-TSS (FBgn0032859) 534 FBgn0032858 FBgn0032858 FBtr0081367 CG10949 protein_coding FLAG-S2-jox2017_R1_peak_36 chr2L 4558076 4558300 + 16 NA exon (FBgn0053196, exon 8 of 47) protein_coding-exon (FBgn0053196, exon 8 of 47) 20013 FBgn0031613 FBgn0031613 FBtr0077444 HP6 protein_coding FLAG-S2-jox2017_R1_peak_219 chr2R 1351835 1352023 + 16 NA Intergenic Intergenic 31412 FBgn0050440 FBgn0050440 FBtr0086076 CG30440 protein_coding FLAG-S2-jox2017_R1_peak_1059 chrUextra 7274130 7274337 + 16 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_294 chr2R 6205389 6205645 + 16 NA exon (FBgn0026403, exon 4 of 12) protein_coding-exon (FBgn0026403, exon 4 of 12) 2488 FBgn0250822 FBgn0250822 FBtr0112415 CG34222 protein_coding FLAG-S2-jox2017_R1_peak_923 chr3R 21915555 21915694 + 16 NA intron (FBgn0039411, intron 2 of 10) protein_coding-intron (FBgn0039411, intron 2 of 10) 8809 FBgn0039411 FBgn0039411 FBtr0113293 dys protein_coding FLAG-S2-jox2017_R1_peak_982 chr3R 27084651 27084790 + 16 NA exon (FBgn0039838, exon 3 of 5) protein_coding-exon (FBgn0039838, exon 3 of 5) -1249 FBgn0040628 FBgn0040628 FBtr0305335 CG18672 protein_coding FLAG-S2-jox2017_R1_peak_555 chr3L 10241092 10241334 + 16 NA Intergenic Intergenic -3407 FBgn0036078 FBgn0036078 FBtr0076300 Or67c protein_coding FLAG-S2-jox2017_R1_peak_1420 chrX 13434865 13435004 + 16 NA Intergenic Intergenic -2742 FBgn0030494 FBgn0030494 FBtr0073784 Cpr12A protein_coding FLAG-S2-jox2017_R1_peak_1054 chrUextra 5845059 5845279 + 16 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1335 chrX 592886 593031 + 16 NA intron (FBgn0021764, intron 2 of 14) protein_coding-intron (FBgn0021764, intron 2 of 14) 12085 FBgn0021764 FBgn0021764 FBtr0302260 sdk protein_coding FLAG-S2-jox2017_R1_peak_773 chr3R 7246332 7246471 + 16 NA exon (FBgn0037896, exon 3 of 6) protein_coding-exon (FBgn0037896, exon 3 of 6) 1014 FBgn0037896 FBgn0037896 FBtr0301146 ninaG protein_coding FLAG-S2-jox2017_R1_peak_727 chr3R 2488580 2488719 + 16 NA exon (FBgn0002522, exon 2 of 3) protein_coding-exon (FBgn0002522, exon 2 of 3) 527 FBgn0002522 FBgn0002522 FBtr0308035 lab protein_coding FLAG-S2-jox2017_R1_peak_846 chr3R 14128236 14128557 + 16 NA promoter-TSS (FBgn0038601) protein_coding-promoter-TSS (FBgn0038601) 175 FBgn0038602 FBgn0038602 FBtr0083593 CG7126 protein_coding FLAG-S2-jox2017_R1_peak_745 chr3R 4139301 4139548 + 16 NA TTS (FBgn0037572) protein_coding-TTS (FBgn0037572) 488 FBgn0037573 FBgn0037573 FBtr0081834 eIF4AIII protein_coding FLAG-S2-jox2017_R1_peak_902 chr3R 19800631 19800785 + 16 NA exon (FBgn0051140, exon 8 of 17) protein_coding-exon (FBgn0051140, exon 8 of 17) -8517 FBgn0051451 FBgn0051451 FBtr0308922 CR31451 ncRNA FLAG-S2-jox2017_R1_peak_1119 chrUextra 16862115 16862345 + 16 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_908 chr3R 20189980 20190286 + 15 NA TTS (FBgn0053340) protein_coding-TTS (FBgn0053340) 569 FBgn0039192 FBgn0039192 FBtr0084626 CG17784 protein_coding FLAG-S2-jox2017_R1_peak_416 chr2R 18364586 18364743 + 15 NA promoter-TSS (FBgn0034732) protein_coding-promoter-TSS (FBgn0034732) -880 FBgn0034732 FBgn0034732 FBtr0302320 CG3701 protein_coding FLAG-S2-jox2017_R1_peak_1391 chrX 8349120 8349299 + 15 NA promoter-TSS (FBgn0021767) protein_coding-promoter-TSS (FBgn0021767) -882 FBgn0021767 FBgn0021767 FBtr0071244 org-1 protein_coding FLAG-S2-jox2017_R1_peak_1159 chrUextra 25668126 25668265 + 15 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1397 chrX 9832044 9832183 + 15 NA Intergenic Intergenic -7101 FBgn0026415 FBgn0026415 FBtr0071394 Idgf4 protein_coding FLAG-S2-jox2017_R1_peak_13 chr2L 2219204 2219554 + 15 NA exon (FBgn0031399, exon 5 of 7) protein_coding-exon (FBgn0031399, exon 5 of 7) 2089 FBgn0031399 FBgn0031399 FBtr0077835 mio protein_coding FLAG-S2-jox2017_R1_peak_602 chr3L 14943537 14943676 + 15 NA Intergenic Intergenic -4381 FBgn0040487 FBgn0040487 FBtr0075673 BobA protein_coding FLAG-S2-jox2017_R1_peak_688 chr3L 23703791 23703930 + 15 NA Intergenic Intergenic -4531 FBgn0039977 FBgn0039977 FBtr0333911 CG17454 protein_coding FLAG-S2-jox2017_R1_peak_215 chr2R 776855 777239 + 15 NA Intergenic Intergenic -60125 FBgn0040849 FBgn0040849 FBtr0299925 Ir41a protein_coding FLAG-S2-jox2017_R1_peak_984 chr3R 27087967 27088116 + 15 NA promoter-TSS (FBgn0040629) protein_coding-promoter-TSS (FBgn0040629) -309 FBgn0040629 FBgn0040629 FBtr0305336 CG18673 protein_coding FLAG-S2-jox2017_R1_peak_858 chr3R 15434420 15434804 + 15 NA exon (FBgn0038717, exon 5 of 6) protein_coding-exon (FBgn0038717, exon 5 of 6) -1335 FBgn0038718 FBgn0038718 FBtr0083779 CG17752 protein_coding FLAG-S2-jox2017_R1_peak_716 chr3R 1295188 1295523 + 15 NA TTS (FBgn0037329) protein_coding-TTS (FBgn0037329) 1027 FBgn0037330 FBgn0037330 FBtr0078768 mRpL44 protein_coding FLAG-S2-jox2017_R1_peak_610 chr3L 16032280 16032589 + 15 NA exon (FBgn0260635, exon 2 of 2) protein_coding-exon (FBgn0260635, exon 2 of 2) 3656 FBgn0036560 FBgn0036560 FBtr0333614 CG5895 protein_coding FLAG-S2-jox2017_R1_peak_251 chr2R 3458248 3458392 + 15 NA exon (FBgn0033194, exon 9 of 30) protein_coding-exon (FBgn0033194, exon 9 of 30) 3984 FBgn0033194 FBgn0033194 FBtr0310024 Vps13 protein_coding FLAG-S2-jox2017_R1_peak_404 chr2R 17522213 17522410 + 15 NA promoter-TSS (FBgn0260720) ncRNA-promoter-TSS (FBgn0260720) 138 FBgn0034643 FBgn0034643 FBtr0330228 CG10321 protein_coding FLAG-S2-jox2017_R1_peak_843 chr3R 14057268 14057431 + 15 NA Intergenic Intergenic -4567 FBgn0011701 FBgn0011701 FBtr0083564 repo protein_coding FLAG-S2-jox2017_R1_peak_1352 chrX 3411749 3411939 + 15 NA intron (FBgn0052791, intron 6 of 8) protein_coding-intron (FBgn0052791, intron 6 of 8) 3456 FBgn0029669 FBgn0029669 FBtr0070571 CG13021 protein_coding FLAG-S2-jox2017_R1_peak_612 chr3L 16258363 16258669 + 15 NA promoter-TSS (FBgn0040798) protein_coding-promoter-TSS (FBgn0040798) 31 FBgn0040798 FBgn0040798 FBtr0075463 CG13069 protein_coding FLAG-S2-jox2017_R1_peak_439 chr2R 20528611 20528765 + 15 NA TTS (FBgn0035042) protein_coding-TTS (FBgn0035042) 1072 FBgn0035043 FBgn0035043 FBtr0072335 CG4781 protein_coding FLAG-S2-jox2017_R1_peak_2 chr2L 322832 322971 + 15 NA exon (FBgn0053127, exon 1 of 1) protein_coding-exon (FBgn0053127, exon 1 of 1) 800 FBgn0053127 FBgn0053127 FBtr0078052 CG33127 protein_coding FLAG-S2-jox2017_R1_peak_581 chr3L 12989381 12989520 + 15 NA exon (FBgn0036329, exon 1 of 1) protein_coding-exon (FBgn0036329, exon 1 of 1) 1215 FBgn0036329 FBgn0036329 FBtr0075872 CG11262 protein_coding FLAG-S2-jox2017_R1_peak_606 chr3L 15513536 15513675 + 15 NA promoter-TSS (FBgn0036504) protein_coding-promoter-TSS (FBgn0036504) -115 FBgn0036504 FBgn0036504 FBtr0075556 yellow-k protein_coding FLAG-S2-jox2017_R1_peak_65 chr2L 6806944 6807142 + 15 NA Intergenic Intergenic -1251 FBgn0031861 FBgn0031861 FBtr0309813 CG17375 protein_coding FLAG-S2-jox2017_R1_peak_580 chr3L 12973464 12973624 + 15 NA Intergenic Intergenic 7970 FBgn0036328 FBgn0036328 FBtr0075871 CG10749 protein_coding FLAG-S2-jox2017_R1_peak_1004 chr4 463503 463642 + 15 NA exon (FBgn0039907, exon 2 of 6) protein_coding-exon (FBgn0039907, exon 2 of 6) 961 FBgn0039907 FBgn0039907 FBtr0089111 lgs protein_coding FLAG-S2-jox2017_R1_peak_122 chr2L 13795614 13795753 + 15 NA exon (FBgn0028538, exon 2 of 3) protein_coding-exon (FBgn0028538, exon 2 of 3) 2133 FBgn0028538 FBgn0028538 FBtr0080538 sec71 protein_coding FLAG-S2-jox2017_R1_peak_626 chr3L 17313395 17313534 + 15 NA exon (FBgn0036706, exon 1 of 1) protein_coding-exon (FBgn0036706, exon 1 of 1) 447 FBgn0036706 FBgn0036706 FBtr0075249 CG6485 protein_coding FLAG-S2-jox2017_R1_peak_618 chr3L 16769203 16769342 + 15 NA TTS (FBgn0036660) protein_coding-TTS (FBgn0036660) 3564 FBgn0036660 FBgn0036660 FBtr0333610 CG13025 protein_coding FLAG-S2-jox2017_R1_peak_31 chr2L 4260318 4260457 + 15 NA Intergenic Intergenic 2815 FBgn0031591 FBgn0031591 FBtr0077471 CG15425 protein_coding FLAG-S2-jox2017_R1_peak_917 chr3R 21182512 21182729 + 15 NA exon (FBgn0004509, exon 7 of 12) protein_coding-exon (FBgn0004509, exon 7 of 12) -1387 FBgn0039331 FBgn0039331 FBtr0273265 CG11913 protein_coding FLAG-S2-jox2017_R1_peak_179 chr2L 19464940 19465228 + 15 NA exon (FBgn0000964, exon 1 of 1) protein_coding-exon (FBgn0000964, exon 1 of 1) 817 FBgn0000964 FBgn0000964 FBtr0329891 tj protein_coding FLAG-S2-jox2017_R1_peak_790 chr3R 9699647 9699927 + 15 NA exon (FBgn0008646, exon 2 of 4) protein_coding-exon (FBgn0008646, exon 2 of 4) 851 FBgn0008646 FBgn0008646 FBtr0082880 E5 protein_coding FLAG-S2-jox2017_R1_peak_694 chr3R 207984 208205 + 15 NA exon (FBgn0037240, exon 2 of 8) protein_coding-exon (FBgn0037240, exon 2 of 8) 1062 FBgn0037240 FBgn0037240 FBtr0078917 Cont protein_coding FLAG-S2-jox2017_R1_peak_150 chr2L 16989383 16989522 + 15 NA intron (FBgn0053179, intron 4 of 6) protein_coding-intron (FBgn0053179, intron 4 of 6) 4474 FBgn0051806 FBgn0051806 FBtr0080952 CG31806 protein_coding FLAG-S2-jox2017_R1_peak_1432 chrX 15725685 15725824 + 15 NA exon (FBgn0000319, exon 4 of 7) protein_coding-exon (FBgn0000319, exon 4 of 7) 3752 FBgn0000319 FBgn0000319 FBtr0074180 Chc protein_coding FLAG-S2-jox2017_R1_peak_739 chr3R 3827929 3828068 + 15 NA promoter-TSS (FBgn0260723) protein_coding-promoter-TSS (FBgn0260723) 714 FBgn0037536 FBgn0037536 FBtr0290324 CG2698 protein_coding FLAG-S2-jox2017_R1_peak_341 chr2R 10993716 10993963 + 15 NA Intergenic Intergenic -8923 FBgn0015371 FBgn0015371 FBtr0305216 chn protein_coding FLAG-S2-jox2017_R1_peak_351 chr2R 12811953 12812211 + 15 NA promoter-TSS (FBgn0003091) protein_coding-promoter-TSS (FBgn0003091) -78 FBgn0003091 FBgn0003091 FBtr0305069 Pkc53E protein_coding FLAG-S2-jox2017_R1_peak_674 chr3L 22254080 22254219 + 15 NA exon (FBgn0028500, exon 2 of 3) protein_coding-exon (FBgn0028500, exon 2 of 3) 1846 FBgn0028500 FBgn0028500 FBtr0078512 Rich protein_coding FLAG-S2-jox2017_R1_peak_1425 chrX 14913524 14913663 + 15 NA intron (FBgn0030600, intron 13 of 22) protein_coding-intron (FBgn0030600, intron 13 of 22) -4874 FBgn0052594 FBgn0052594 FBtr0310270 be protein_coding FLAG-S2-jox2017_R1_peak_1374 chrX 5780959 5781117 + 15 NA Intergenic Intergenic 7147 FBgn0029820 FBgn0029820 FBtr0070821 CG16721 protein_coding FLAG-S2-jox2017_R1_peak_466 chr3L 1700191 1700412 + 15 NA TTS (FBgn0035258) protein_coding-TTS (FBgn0035258) 2106 FBgn0035258 FBgn0035258 FBtr0072802 CG13931 protein_coding FLAG-S2-jox2017_R1_peak_914 chr3R 21097682 21097821 + 15 NA exon (FBgn0039308, exon 2 of 3) protein_coding-exon (FBgn0039308, exon 2 of 3) 155 FBgn0039309 FBgn0039309 FBtr0300132 CG11891 protein_coding FLAG-S2-jox2017_R1_peak_623 chr3L 16932256 16932395 + 15 NA promoter-TSS (FBgn0036679) protein_coding-promoter-TSS (FBgn0036679) -273 FBgn0036679 FBgn0036679 FBtr0273313 CG13022 protein_coding FLAG-S2-jox2017_R1_peak_862 chr3R 15615118 15615331 + 15 NA promoter-TSS (FBgn0012004) tRNA-promoter-TSS (FBgn0012004) -620 FBgn0012004 FBgn0012004 FBtr0083792 tRNA:V3b:92Bb tRNA FLAG-S2-jox2017_R1_peak_594 chr3L 14245285 14245424 + 15 NA Intergenic Intergenic 15619 FBgn0036417 FBgn0036417 FBtr0075741 CG7906 protein_coding FLAG-S2-jox2017_R1_peak_116 chr2L 13381548 13381753 + 15 NA promoter-TSS (FBgn0032515) protein_coding-promoter-TSS (FBgn0032515) -998 FBgn0032515 FBgn0032515 FBtr0303269 loqs protein_coding FLAG-S2-jox2017_R1_peak_728 chr3R 2590329 2590538 + 15 NA exon (FBgn0000071, exon 2 of 2) protein_coding-exon (FBgn0000071, exon 2 of 2) 1305 FBgn0000071 FBgn0000071 FBtr0081620 Ama protein_coding FLAG-S2-jox2017_R1_peak_312 chr2R 7781754 7781893 + 15 NA exon (FBgn0000556, exon 2 of 2) protein_coding-exon (FBgn0000556, exon 2 of 2) 1195 FBgn0015543 FBgn0015543 FBtr0088037 snoRNA:Me28S-A1322 snoRNA FLAG-S2-jox2017_R1_peak_1011 chrU 44746 44913 + 15 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_903 chr3R 19878153 19878513 + 15 NA exon (FBgn0026576, exon 2 of 2) protein_coding-exon (FBgn0026576, exon 2 of 2) 923 FBgn0026576 FBgn0026576 FBtr0084538 CG5991 protein_coding FLAG-S2-jox2017_R1_peak_438 chr2R 20526063 20526285 + 15 NA promoter-TSS (FBgn0035041) protein_coding-promoter-TSS (FBgn0035041) -64 FBgn0035041 FBgn0035041 FBtr0072336 CG13594 protein_coding FLAG-S2-jox2017_R1_peak_163 chr2L 18288773 18288919 + 15 NA Intergenic Intergenic 2616 FBgn0263094 FBgn0263094 FBtr0307109 CG43362 protein_coding FLAG-S2-jox2017_R1_peak_276 chr2R 4985662 4985820 + 15 NA promoter-TSS (FBgn0033376) protein_coding-promoter-TSS (FBgn0033376) 231 FBgn0033375 FBgn0033375 FBtr0088631 CG8078 protein_coding FLAG-S2-jox2017_R1_peak_1289 chrUextra 28850554 28850784 + 15 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_307 chr2R 7263724 7263974 + 15 NA exon (FBgn0033628, exon 3 of 3) protein_coding-exon (FBgn0033628, exon 3 of 3) 1161 FBgn0033628 FBgn0033628 FBtr0304902 CG13203 protein_coding FLAG-S2-jox2017_R1_peak_1268 chrUextra 28766136 28766365 + 15 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_175 chr2L 19206212 19206478 + 15 NA exon (FBgn0015380, exon 2 of 4) protein_coding-exon (FBgn0015380, exon 2 of 4) 15999 FBgn0015380 FBgn0015380 FBtr0330209 drl protein_coding FLAG-S2-jox2017_R1_peak_431 chr2R 19930698 19930968 + 15 NA exon (FBgn0034964, exon 3 of 3) protein_coding-exon (FBgn0034964, exon 3 of 3) 3526 FBgn0011726 FBgn0011726 FBtr0072188 tsr protein_coding FLAG-S2-jox2017_R1_peak_749 chr3R 4851308 4851447 + 15 NA intron (FBgn0002932, intron 1 of 2) protein_coding-intron (FBgn0002932, intron 1 of 2) 3448 FBgn0063298 FBgn0063298 FBtr0309819 CR31429 ncRNA FLAG-S2-jox2017_R1_peak_896 chr3R 19232368 19232661 + 15 NA exon (FBgn0259194, exon 2 of 2) protein_coding-exon (FBgn0259194, exon 2 of 2) 1283 FBgn0259194 FBgn0259194 FBtr0299678 Ir94e protein_coding FLAG-S2-jox2017_R1_peak_325 chr2R 8793886 8794044 + 15 NA Intergenic Intergenic -9537 FBgn0010488 FBgn0010488 FBtr0087787 NAT1 protein_coding FLAG-S2-jox2017_R1_peak_1356 chrX 3672776 3672917 + 15 NA intron (FBgn0086899, intron 2 of 8) protein_coding-intron (FBgn0086899, intron 3 of 9) 1357 FBgn0263532 FBgn0263532 FBtr0309622 mir-4962 pre_miRNA FLAG-S2-jox2017_R1_peak_826 chr3R 12511305 12511644 + 15 NA intron (FBgn0003944, intron 1 of 1) protein_coding-intron (FBgn0003944, intron 3 of 3) -29985 FBgn0051217 FBgn0051217 FBtr0083353 modSP protein_coding FLAG-S2-jox2017_R1_peak_464 chr3L 1649353 1649492 + 15 NA TTS (FBgn0013755) protein_coding-TTS (FBgn0013755) 416 FBgn0025712 FBgn0025712 FBtr0072761 CG13920 protein_coding FLAG-S2-jox2017_R1_peak_696 chr3R 249817 249956 + 15 NA exon (FBgn0037248, exon 5 of 7) protein_coding-exon (FBgn0037248, exon 5 of 7) -2866 FBgn0051525 FBgn0051525 FBtr0078924 CG31525 protein_coding FLAG-S2-jox2017_R1_peak_121 chr2L 13777533 13777780 + 15 NA exon (FBgn0051845, exon 1 of 2) ncRNA-exon (FBgn0051845, exon 1 of 2) 461 FBgn0051845 FBgn0051845 FBtr0307578 CR31845 ncRNA FLAG-S2-jox2017_R1_peak_225 chr2R 1642617 1642820 + 15 NA exon (FBgn0022288, exon 1 of 1) protein_coding-exon (FBgn0022288, exon 1 of 1) 685 FBgn0022288 FBgn0022288 FBtr0086043 l(2)09851 protein_coding FLAG-S2-jox2017_R1_peak_383 chr2R 15987305 15987450 + 15 NA Intergenic Intergenic -11639 FBgn0004364 FBgn0004364 FBtr0086309 18w protein_coding FLAG-S2-jox2017_R1_peak_677 chr3L 22404618 22404767 + 15 NA Intergenic Intergenic -3729 FBgn0004449 FBgn0004449 FBtr0330159 Ten-m protein_coding FLAG-S2-jox2017_R1_peak_1442 chrX 16938398 16938738 + 15 NA Intergenic Intergenic -12000 FBgn0085355 FBgn0085355 FBtr0112528 CG34326 protein_coding FLAG-S2-jox2017_R1_peak_585 chr3L 13795171 13795526 + 15 NA intron (FBgn0264001, intron 1 of 13) protein_coding-intron (FBgn0264001, intron 1 of 13) 1152 FBgn0264001 FBgn0264001 FBtr0330354 bru-3 protein_coding FLAG-S2-jox2017_R1_peak_992 chr3R 27674973 27675112 + 15 NA TTS (FBgn0011224) protein_coding-TTS (FBgn0011224) 23476 FBgn0039883 FBgn0039883 FBtr0304596 RhoGAP100F protein_coding FLAG-S2-jox2017_R1_peak_115 chr2L 13379202 13379360 + 15 NA promoter-TSS (FBgn0032514) protein_coding-promoter-TSS (FBgn0032514) 384 FBgn0025724 FBgn0025724 FBtr0080469 beta'Cop protein_coding FLAG-S2-jox2017_R1_peak_834 chr3R 13223628 13223834 + 15 NA exon (FBgn0038504, exon 3 of 3) protein_coding-exon (FBgn0038504, exon 3 of 3) -3369 FBgn0025456 FBgn0025456 FBtr0089896 CREG protein_coding FLAG-S2-jox2017_R1_peak_544 chr3L 8998956 8999095 + 15 NA exon (FBgn0035954, exon 3 of 5) protein_coding-exon (FBgn0035954, exon 3 of 5) 729 FBgn0035954 FBgn0035954 FBtr0076521 Doc3 protein_coding FLAG-S2-jox2017_R1_peak_285 chr2R 5866547 5866694 + 15 NA promoter-TSS (FBgn0000606) protein_coding-promoter-TSS (FBgn0000606) -204 FBgn0000606 FBgn0000606 FBtr0088390 eve protein_coding FLAG-S2-jox2017_R1_peak_567 chr3L 11624762 11624901 + 15 NA TTS (FBgn0042138) protein_coding-TTS (FBgn0042138) 339 FBgn0052091 FBgn0052091 FBtr0076106 CG32091 protein_coding FLAG-S2-jox2017_R1_peak_806 chr3R 11054066 11054205 + 15 NA TTS (FBgn0263979) protein_coding-TTS (FBgn0263979) 1026 FBgn0038306 FBgn0038306 FBtr0083135 Art3 protein_coding FLAG-S2-jox2017_R1_peak_738 chr3R 3764445 3764608 + 15 NA intron (FBgn0000504, intron 2 of 4) protein_coding-intron (FBgn0000504, intron 2 of 4) 16861 FBgn0261453 FBgn0261453 FBtr0309754 scaRNA:mgU2-41 snoRNA FLAG-S2-jox2017_R1_peak_512 chr3L 5925085 5925224 + 15 NA TTS (FBgn0053993) protein_coding-TTS (FBgn0053993) 558 FBgn0002638 FBgn0002638 FBtr0077076 Bj1 protein_coding FLAG-S2-jox2017_R1_peak_1211 chrUextra 28324047 28324260 + 14 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_611 chr3L 16256043 16256200 + 14 NA promoter-TSS (FBgn0036586) protein_coding-promoter-TSS (FBgn0036586) 281 FBgn0036585 FBgn0036585 FBtr0303379 CG13071 protein_coding FLAG-S2-jox2017_R1_peak_1181 chrUextra 27477619 27477806 + 14 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1416 chrX 12555623 12555762 + 14 NA intron (FBgn0011837, intron 2 of 3) protein_coding-intron (FBgn0011837, intron 2 of 3) 2197 FBgn0053963 FBgn0053963 FBtr0100004 CR33963 ncRNA FLAG-S2-jox2017_R1_peak_794 chr3R 9954579 9954869 + 14 NA exon (FBgn0262955, exon 3 of 4) protein_coding-exon (FBgn0262955, exon 3 of 4) 3067 FBgn0038207 FBgn0038207 FBtr0082908 CG14356 protein_coding FLAG-S2-jox2017_R1_peak_886 chr3R 18125186 18125325 + 14 NA promoter-TSS (FBgn0038938) protein_coding-promoter-TSS (FBgn0038938) 316 FBgn0038938 FBgn0038938 FBtr0306028 CG7084 protein_coding FLAG-S2-jox2017_R1_peak_1447 chrX 18397474 18397613 + 14 NA exon (FBgn0010194, exon 1 of 1) protein_coding-exon (FBgn0010194, exon 1 of 1) 1893 FBgn0010194 FBgn0010194 FBtr0074623 Wnt5 protein_coding FLAG-S2-jox2017_R1_peak_99 chr2L 11387100 11387239 + 14 NA Intergenic Intergenic 5129 FBgn0263764 FBgn0263764 FBtr0333747 CG43681 protein_coding FLAG-S2-jox2017_R1_peak_435 chr2R 20113150 20113289 + 14 NA intron (FBgn0050419, intron 1 of 1) protein_coding-intron (FBgn0050419, intron 1 of 1) 4092 FBgn0050419 FBgn0050419 FBtr0072275 CG30419 protein_coding FLAG-S2-jox2017_R1_peak_1103 chrUextra 13785447 13785661 + 14 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_133 chr2L 15205951 15206096 + 14 NA Intergenic Intergenic 3764 FBgn0263089 FBgn0263089 FBtr0307107 CR43357 ncRNA FLAG-S2-jox2017_R1_peak_280 chr2R 5206997 5207136 + 14 NA exon (FBgn0033403, exon 3 of 4) protein_coding-exon (FBgn0033403, exon 3 of 4) -6459 FBgn0262220 FBgn0262220 FBtr0304278 mir-987 pre_miRNA FLAG-S2-jox2017_R1_peak_105 chr2L 12019987 12020133 + 14 NA exon (FBgn0032395, exon 1 of 4) protein_coding-exon (FBgn0032395, exon 1 of 4) 878 FBgn0032395 FBgn0032395 FBtr0080312 CG6734 protein_coding FLAG-S2-jox2017_R1_peak_601 chr3L 14939527 14939843 + 14 NA promoter-TSS (FBgn0040487) protein_coding-promoter-TSS (FBgn0040487) -460 FBgn0040487 FBgn0040487 FBtr0075673 BobA protein_coding FLAG-S2-jox2017_R1_peak_662 chr3L 20667949 20668243 + 14 NA Intergenic Intergenic 20382 FBgn0001320 FBgn0001320 FBtr0078283 kni protein_coding FLAG-S2-jox2017_R1_peak_138 chr2L 15780249 15780429 + 14 NA Intergenic Intergenic -3487 FBgn0264260 FBgn0264260 FBtr0331279 CG43760 protein_coding FLAG-S2-jox2017_R1_peak_117 chr2L 13390778 13390917 + 14 NA exon (FBgn0032517, exon 5 of 7) protein_coding-exon (FBgn0032517, exon 5 of 7) 3211 FBgn0032517 FBgn0032517 FBtr0080499 CG7099 protein_coding FLAG-S2-jox2017_R1_peak_1346 chrX 2090475 2090614 + 14 NA intron (FBgn0023549, intron 1 of 8) protein_coding-intron (FBgn0023549, intron 1 of 8) 1928 FBgn0023549 FBgn0023549 FBtr0070393 Mct1 protein_coding FLAG-S2-jox2017_R1_peak_174 chr2L 19185387 19185536 + 14 NA promoter-TSS (FBgn0010309) protein_coding-promoter-TSS (FBgn0010309) 265 FBgn0010097 FBgn0010097 FBtr0081228 gammaTub37C protein_coding FLAG-S2-jox2017_R1_peak_607 chr3L 15598556 15598695 + 14 NA exon (FBgn0036518, exon 6 of 7) protein_coding-exon (FBgn0036518, exon 6 of 7) 4861 FBgn0036519 FBgn0036519 FBtr0075591 CG7650 protein_coding FLAG-S2-jox2017_R1_peak_961 chr3R 25517832 25517971 + 14 NA promoter-TSS (FBgn0039683) protein_coding-promoter-TSS (FBgn0039683) -412 FBgn0039683 FBgn0039683 FBtr0085454 dmrt99B protein_coding FLAG-S2-jox2017_R1_peak_43 chr2L 5192207 5192346 + 14 NA exon (FBgn0261836, exon 20 of 27) protein_coding-exon (FBgn0261836, exon 20 of 27) -1195 FBgn0065083 FBgn0065083 FBtr0091790 snmRNA:765 ncRNA FLAG-S2-jox2017_R1_peak_503 chr3L 4549538 4549677 + 14 NA intron (FBgn0035558, intron 2 of 3) protein_coding-intron (FBgn0035558, intron 2 of 3) 5629 FBgn0053777 FBgn0053777 FBtr0091778 CG33777 protein_coding FLAG-S2-jox2017_R1_peak_856 chr3R 15307132 15307358 + 14 NA exon (FBgn0260003, exon 6 of 35) protein_coding-exon (FBgn0260003, exon 6 of 35) 9592 FBgn0038709 FBgn0038709 FBtr0083768 CG15025 protein_coding FLAG-S2-jox2017_R1_peak_1389 chrX 8040607 8040746 + 14 NA exon (FBgn0030008, exon 1 of 1) protein_coding-exon (FBgn0030008, exon 1 of 1) 804 FBgn0030008 FBgn0030008 FBtr0071155 CG2129 protein_coding FLAG-S2-jox2017_R1_peak_789 chr3R 9522677 9522981 + 14 NA exon (FBgn0028487, exon 8 of 12) protein_coding-exon (FBgn0028487, exon 8 of 12) 1462 FBgn0028487 FBgn0028487 FBtr0112939 f-cup protein_coding FLAG-S2-jox2017_R1_peak_993 chr3RHet 71 406 + 14 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_757 chr3R 5490254 5490513 + 14 NA exon (FBgn0037726, exon 16 of 35) protein_coding-exon (FBgn0037726, exon 16 of 35) 9982 FBgn0037726 FBgn0037726 FBtr0309028 CG9492 protein_coding FLAG-S2-jox2017_R1_peak_477 chr3L 2245415 2245554 + 14 NA exon (FBgn0052301, exon 4 of 11) protein_coding-exon (FBgn0052301, exon 4 of 11) 1006 FBgn0052301 FBgn0052301 FBtr0332663 CG32301 protein_coding FLAG-S2-jox2017_R1_peak_151 chr2L 17181109 17181248 + 14 NA promoter-TSS (FBgn0046888) protein_coding-promoter-TSS (FBgn0046888) -760 FBgn0046888 FBgn0046888 FBtr0080965 Gr36d protein_coding FLAG-S2-jox2017_R1_peak_79 chr2L 8999018 8999209 + 14 NA TTS (FBgn0040964) protein_coding-TTS (FBgn0040964) 576 FBgn0015316 FBgn0015316 FBtr0301665 Try29F protein_coding FLAG-S2-jox2017_R1_peak_927 chr3R 22013216 22013675 + 14 NA TTS (FBgn0051323) protein_coding-TTS (FBgn0051323) 1081 FBgn0039417 FBgn0039417 FBtr0307342 CG6073 protein_coding FLAG-S2-jox2017_R1_peak_506 chr3L 4685122 4685289 + 14 NA intron (FBgn0262870, intron 1 of 20) protein_coding-intron (FBgn0262870, intron 1 of 20) 2112 FBgn0262870 FBgn0262870 FBtr0306207 axo protein_coding FLAG-S2-jox2017_R1_peak_1308 chrUextra 28911443 28911654 + 14 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1368 chrX 5252526 5252708 + 14 NA exon (FBgn0029761, exon 1 of 13) protein_coding-exon (FBgn0029761, exon 1 of 13) 18348 FBgn0029761 FBgn0029761 FBtr0301952 SK protein_coding FLAG-S2-jox2017_R1_peak_819 chr3R 11761784 11761926 + 14 NA exon (FBgn0013334, exon 1 of 9) protein_coding-exon (FBgn0013334, exon 1 of 9) 1014 FBgn0013334 FBgn0013334 FBtr0310672 Sap47 protein_coding FLAG-S2-jox2017_R1_peak_165 chr2L 18493424 18493599 + 14 NA exon (FBgn0032683, exon 7 of 12) protein_coding-exon (FBgn0032683, exon 7 of 12) 7346 FBgn0032683 FBgn0032683 FBtr0332323 kon protein_coding FLAG-S2-jox2017_R1_peak_84 chr2L 9650833 9650972 + 14 NA exon (FBgn0032136, exon 13 of 20) protein_coding-exon (FBgn0032136, exon 13 of 20) -5698 FBgn0053299 FBgn0053299 FBtr0303875 CG33299 protein_coding FLAG-S2-jox2017_R1_peak_772 chr3R 7009031 7009194 + 14 NA Intergenic Intergenic 7861 FBgn0040252 FBgn0040252 FBtr0082340 Ugt86Dh protein_coding FLAG-S2-jox2017_R1_peak_29 chr2L 3934951 3935146 + 14 NA intron (FBgn0051774, intron 3 of 9) protein_coding-intron (FBgn0051774, intron 3 of 8) -20760 FBgn0051773 FBgn0051773 FBtr0077509 CG31773 protein_coding FLAG-S2-jox2017_R1_peak_230 chr2R 2100314 2100496 + 14 NA exon (FBgn0021847, exon 4 of 9) protein_coding-exon (FBgn0021847, exon 4 of 9) 1218 FBgn0021847 FBgn0021847 FBtr0305967 l(2)k14710 protein_coding FLAG-S2-jox2017_R1_peak_1426 chrX 15250598 15250854 + 14 NA intron (FBgn0000028, intron 3 of 7) protein_coding-intron (FBgn0000028, intron 4 of 8) 4368 FBgn0003132 FBgn0003132 FBtr0074017 Pp1-13C protein_coding FLAG-S2-jox2017_R1_peak_898 chr3R 19415408 19415547 + 14 NA promoter-TSS (FBgn0039091) protein_coding-promoter-TSS (FBgn0039091) 60 FBgn0039091 FBgn0039091 FBtr0084486 CG10182 protein_coding FLAG-S2-jox2017_R1_peak_176 chr2L 19207361 19207511 + 14 NA exon (FBgn0015380, exon 3 of 4) protein_coding-exon (FBgn0015380, exon 3 of 4) 17090 FBgn0015380 FBgn0015380 FBtr0330209 drl protein_coding FLAG-S2-jox2017_R1_peak_1443 chrX 17379927 17380066 + 14 NA intron (FBgn0263706, intron 4 of 8) protein_coding-intron (FBgn0263706, intron 4 of 8) 3352 FBgn0263706 FBgn0263706 FBtr0330597 CG43658 protein_coding FLAG-S2-jox2017_R1_peak_924 chr3R 21970880 21971086 + 14 NA Intergenic Intergenic 12107 FBgn0039415 FBgn0039415 FBtr0084987 CG6142 protein_coding FLAG-S2-jox2017_R1_peak_511 chr3L 5758188 5758422 + 14 NA promoter-TSS (FBgn0035631) protein_coding-promoter-TSS (FBgn0035631) -159 FBgn0263488 FBgn0263488 FBtr0309787 unsRNA:CG10576-a ncRNA FLAG-S2-jox2017_R1_peak_1464 chrX 22039099 22039238 + 14 NA Intergenic Intergenic -4623 FBgn0052499 FBgn0052499 FBtr0077362 Cda4 protein_coding FLAG-S2-jox2017_R1_peak_63 chr2L 6734617 6734756 + 14 NA exon (FBgn0031853, exon 2 of 5) protein_coding-exon (FBgn0031853, exon 2 of 5) 1820 FBgn0031853 FBgn0031853 FBtr0300056 TTLL3B protein_coding FLAG-S2-jox2017_R1_peak_118 chr2L 13442778 13442950 + 14 NA intron (FBgn0263354, intron 2 of 8) protein_coding-intron (FBgn0263354, intron 2 of 8) 2787 FBgn0032524 FBgn0032524 FBtr0080519 CG9267 protein_coding FLAG-S2-jox2017_R1_peak_1451 chrX 19191784 19191963 + 14 NA exon (FBgn0031011, exon 1 of 4) protein_coding-exon (FBgn0031011, exon 1 of 4) 4033 FBgn0065084 FBgn0065084 FBtr0091699 snmRNA:763 ncRNA FLAG-S2-jox2017_R1_peak_646 chr3L 19534719 19534858 + 14 NA exon (FBgn0036882, exon 3 of 4) protein_coding-exon (FBgn0036882, exon 3 of 4) 1266 FBgn0036882 FBgn0036882 FBtr0332758 CG9279 protein_coding FLAG-S2-jox2017_R1_peak_637 chr3L 18539524 18539663 + 14 NA Intergenic Intergenic -13765 FBgn0036790 FBgn0036790 FBtr0089578 star1 protein_coding FLAG-S2-jox2017_R1_peak_209 chr2L 22908082 22908221 + 14 NA exon (FBgn0250907, exon 4 of 9) protein_coding-exon (FBgn0250907, exon 4 of 9) 10409 FBgn0250907 FBgn0250907 FBtr0331165 Cht3 protein_coding FLAG-S2-jox2017_R1_peak_1013 chrU 215007 215146 + 14 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1360 chrX 4456141 4456341 + 14 NA intron (FBgn0052773, intron 2 of 4) protein_coding-intron (FBgn0052773, intron 2 of 4) 4136 FBgn0029716 FBgn0029716 FBtr0070679 CG3546 protein_coding FLAG-S2-jox2017_R1_peak_86 chr2L 9952735 9952874 + 14 NA exon (FBgn0032168, exon 2 of 3) protein_coding-exon (FBgn0032168, exon 2 of 3) 1376 FBgn0032168 FBgn0032168 FBtr0079892 CG13126 protein_coding FLAG-S2-jox2017_R1_peak_388 chr2R 16171856 16172248 + 14 NA exon (FBgn0034498, exon 5 of 6) protein_coding-exon (FBgn0034498, exon 5 of 6) 2532 FBgn0034498 FBgn0034498 FBtr0086302 CG16868 protein_coding FLAG-S2-jox2017_R1_peak_59 chr2L 6381360 6381499 + 14 NA exon (FBgn0031808, exon 1 of 1) protein_coding-exon (FBgn0031808, exon 1 of 1) 163 FBgn0031808 FBgn0031808 FBtr0079255 CG9507 protein_coding FLAG-S2-jox2017_R1_peak_534 chr3L 8307562 8307701 + 14 NA exon (FBgn0035872, exon 2 of 7) protein_coding-exon (FBgn0035872, exon 2 of 7) 971 FBgn0035872 FBgn0035872 FBtr0304628 CG7185 protein_coding FLAG-S2-jox2017_R1_peak_657 chr3L 20290852 20291076 + 14 NA promoter-TSS (FBgn0036964) protein_coding-promoter-TSS (FBgn0036964) -893 FBgn0036964 FBgn0036964 FBtr0074847 CG6480 protein_coding FLAG-S2-jox2017_R1_peak_983 chr3R 27086889 27087150 + 14 NA intron (FBgn0040628, intron 4 of 4) protein_coding-intron (FBgn0040628, intron 4 of 4) 1050 FBgn0040628 FBgn0040628 FBtr0305335 CG18672 protein_coding FLAG-S2-jox2017_R1_peak_370 chr2R 14671985 14672124 + 14 NA intron (FBgn0034391, intron 1 of 5) protein_coding-intron (FBgn0034391, intron 1 of 5) 1248 FBgn0034391 FBgn0034391 FBtr0086613 CG15080 protein_coding FLAG-S2-jox2017_R1_peak_681 chr3L 22895516 22895901 + 14 NA exon (FBgn0037205, exon 1 of 1) protein_coding-exon (FBgn0037205, exon 1 of 1) 674 FBgn0037205 FBgn0037205 FBtr0078559 BoYb protein_coding FLAG-S2-jox2017_R1_peak_722 chr3R 2049032 2049291 + 14 NA Intergenic Intergenic -1658 FBgn0037412 FBgn0037412 FBtr0078615 Osi4 protein_coding FLAG-S2-jox2017_R1_peak_337 chr2R 10351017 10351223 + 14 NA exon (FBgn0261613, exon 4 of 4) protein_coding-exon (FBgn0261613, exon 4 of 4) -17596 FBgn0001332 FBgn0001332 FBtr0087492 L protein_coding FLAG-S2-jox2017_R1_peak_254 chr2R 3562940 3563102 + 14 NA TTS (FBgn0033209) protein_coding-TTS (FBgn0033209) 836 FBgn0033210 FBgn0033210 FBtr0088941 U2A protein_coding FLAG-S2-jox2017_R1_peak_195 chr2L 20738490 20738629 + 14 NA exon (FBgn0262743, exon 6 of 7) protein_coding-exon (FBgn0262743, exon 6 of 7) 3644 FBgn0262743 FBgn0262743 FBtr0081392 Fs(2)Ket protein_coding FLAG-S2-jox2017_R1_peak_570 chr3L 11799046 11799208 + 14 NA exon (FBgn0259140, exon 11 of 17) protein_coding-exon (FBgn0259140, exon 11 of 17) -4485 FBgn0052093 FBgn0052093 FBtr0076083 tRNA:CR32093 tRNA FLAG-S2-jox2017_R1_peak_816 chr3R 11670382 11670587 + 14 NA TTS (FBgn0003483) protein_coding-TTS (FBgn0003483) -1746 FBgn0038373 FBgn0038373 FBtr0083184 CG4546 protein_coding FLAG-S2-jox2017_R1_peak_292 chr2R 6104369 6104683 + 14 NA intron (FBgn0000448, intron 1 of 8) protein_coding-intron (FBgn0000448, intron 1 of 8) 10932 FBgn0000448 FBgn0000448 FBtr0306346 Hr46 protein_coding FLAG-S2-jox2017_R1_peak_1106 chrUextra 14130109 14130281 + 14 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_572 chr3L 11845424 11845737 + 14 NA exon (FBgn0085449, exon 3 of 3) protein_coding-exon (FBgn0085449, exon 3 of 3) -4677 FBgn0040816 FBgn0040816 FBtr0076074 CG12521 protein_coding FLAG-S2-jox2017_R1_peak_23 chr2L 3248923 3249187 + 14 NA Intergenic Intergenic -20382 FBgn0031513 FBgn0031513 FBtr0301033 CG3347 protein_coding FLAG-S2-jox2017_R1_peak_752 chr3R 5223912 5224125 + 14 NA exon (FBgn0037685, exon 1 of 4) protein_coding-exon (FBgn0037685, exon 1 of 4) 106 FBgn0037685 FBgn0037685 FBtr0082028 Or85f protein_coding FLAG-S2-jox2017_R1_peak_1461 chrX 20704564 20704731 + 14 NA intron (FBgn0085387, intron 3 of 11) protein_coding-intron (FBgn0085387, intron 2 of 10) 11474 FBgn0031132 FBgn0031132 FBtr0077280 CG15450 protein_coding FLAG-S2-jox2017_R1_peak_1376 chrX 6012035 6012198 + 14 NA intron (FBgn0264386, intron 16 of 24) protein_coding-intron (FBgn0264386, intron 17 of 25) 24214 FBgn0029843 FBgn0029843 FBtr0070873 Nep1 protein_coding FLAG-S2-jox2017_R1_peak_758 chr3R 5497314 5497596 + 14 NA exon (FBgn0037726, exon 6 of 35) protein_coding-exon (FBgn0037726, exon 6 of 35) 2910 FBgn0037726 FBgn0037726 FBtr0309028 CG9492 protein_coding FLAG-S2-jox2017_R1_peak_372 chr2R 15001972 15002278 + 14 NA intron (FBgn0004168, intron 8 of 10) protein_coding-intron (FBgn0004168, intron 8 of 10) 12599 FBgn0034417 FBgn0034417 FBtr0100129 CG15117 protein_coding FLAG-S2-jox2017_R1_peak_104 chr2L 11698894 11699230 + 14 NA Intergenic Intergenic 4206 FBgn0032372 FBgn0032372 FBtr0080254 CG4988 protein_coding FLAG-S2-jox2017_R1_peak_828 chr3R 12598781 12599073 + 14 NA promoter-TSS (FBgn0020556) ncRNA-promoter-TSS (FBgn0020556) -6849 FBgn0085056 FBgn0085056 FBtr0113492 tre-1 ncRNA FLAG-S2-jox2017_R1_peak_1428 chrX 15353308 15353447 + 14 NA exon (FBgn0004391, exon 5 of 8) protein_coding-exon (FBgn0004391, exon 5 of 8) -1898 FBgn0004391 FBgn0004391 FBtr0074078 shtd protein_coding FLAG-S2-jox2017_R1_peak_645 chr3L 19529686 19529831 + 14 NA exon (FBgn0036881, exon 2 of 5) protein_coding-exon (FBgn0036881, exon 2 of 5) 3915 FBgn0036881 FBgn0036881 FBtr0332756 Cpr76Bd protein_coding FLAG-S2-jox2017_R1_peak_474 chr3L 2088999 2089217 + 14 NA exon (FBgn0262107, exon 1 of 2) ncRNA-exon (FBgn0262107, exon 1 of 2) 942 FBgn0262107 FBgn0262107 FBtr0304033 CR42860 ncRNA FLAG-S2-jox2017_R1_peak_753 chr3R 5240472 5240629 + 14 NA exon (FBgn0011740, exon 3 of 5) protein_coding-exon (FBgn0011740, exon 3 of 5) 2279 FBgn0011740 FBgn0011740 FBtr0082031 alpha-Man-II protein_coding FLAG-S2-jox2017_R1_peak_61 chr2L 6419640 6420069 + 14 NA exon (FBgn0011722, exon 3 of 6) protein_coding-exon (FBgn0011722, exon 3 of 6) 3454 FBgn0011722 FBgn0011722 FBtr0079275 Tig protein_coding FLAG-S2-jox2017_R1_peak_11 chr2L 1743401 1743540 + 14 NA exon (FBgn0264494, exon 4 of 12) protein_coding-exon (FBgn0264494, exon 4 of 12) 6001 FBgn0264494 FBgn0264494 FBtr0077886 CG17646 protein_coding FLAG-S2-jox2017_R1_peak_492 chr3L 3214281 3214609 + 14 NA exon (FBgn0035420, exon 8 of 10) protein_coding-exon (FBgn0035420, exon 8 of 10) 4475 FBgn0035420 FBgn0035420 FBtr0302302 CG14967 protein_coding FLAG-S2-jox2017_R1_peak_136 chr2L 15461360 15461499 + 14 NA Intergenic Intergenic 16840 FBgn0003448 FBgn0003448 FBtr0080739 sna protein_coding FLAG-S2-jox2017_R1_peak_968 chr3R 25882860 25883046 + 13 NA TTS (FBgn0039744) protein_coding-TTS (FBgn0039744) 378 FBgn0260468 FBgn0260468 FBtr0085564 CG7950 protein_coding FLAG-S2-jox2017_R1_peak_513 chr3L 5935270 5935437 + 13 NA intron (FBgn0053993, intron 1 of 5) protein_coding-intron (FBgn0053993, intron 1 of 5) -6950 FBgn0053993 FBgn0053993 FBtr0301034 CG33993 protein_coding FLAG-S2-jox2017_R1_peak_712 chr3R 1061275 1061414 + 13 NA TTS (FBgn0087005) protein_coding-TTS (FBgn0087005) 1693 FBgn0087005 FBgn0087005 FBtr0078825 rtp protein_coding FLAG-S2-jox2017_R1_peak_569 chr3L 11693428 11693753 + 13 NA exon (FBgn0036196, exon 5 of 5) protein_coding-exon (FBgn0036196, exon 5 of 5) -1227 FBgn0036195 FBgn0036195 FBtr0332765 CG6053 protein_coding FLAG-S2-jox2017_R1_peak_441 chr2R 20649242 20649567 + 13 NA TTS (FBgn0040666) protein_coding-TTS (FBgn0040666) 1201 FBgn0040666 FBgn0040666 FBtr0310371 CG12848 protein_coding FLAG-S2-jox2017_R1_peak_331 chr2R 9666982 9667254 + 13 NA exon (FBgn0033868, exon 1 of 1) protein_coding-exon (FBgn0033868, exon 1 of 1) 632 FBgn0033868 FBgn0033868 FBtr0332255 S-Lap7 protein_coding FLAG-S2-jox2017_R1_peak_1196 chrUextra 27985843 27986072 + 13 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_430 chr2R 19852954 19853190 + 13 NA TTS (FBgn0034943) protein_coding-TTS (FBgn0034943) 782 FBgn0020764 FBgn0020764 FBtr0072151 Alas protein_coding FLAG-S2-jox2017_R1_peak_158 chr2L 18001252 18001474 + 13 NA Intergenic Intergenic -5316 FBgn0040989 FBgn0040989 FBtr0081026 CG5693 protein_coding FLAG-S2-jox2017_R1_peak_861 chr3R 15604490 15604707 + 13 NA exon (FBgn0038732, exon 1 of 2) protein_coding-exon (FBgn0038732, exon 1 of 2) 110 FBgn0038732 FBgn0038732 FBtr0083789 CG11391 protein_coding FLAG-S2-jox2017_R1_peak_1020 chrU 1832249 1832458 + 13 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_277 chr2R 5061774 5062138 + 13 NA exon (FBgn0015477, exon 9 of 22) protein_coding-exon (FBgn0015477, exon 9 of 22) 2729 FBgn0015477 FBgn0015477 FBtr0088618 Rme-8 protein_coding FLAG-S2-jox2017_R1_peak_82 chr2L 9431658 9431837 + 13 NA promoter-TSS (FBgn0032117) protein_coding-promoter-TSS (FBgn0032117) 342 FBgn0011232 FBgn0011232 FBtr0079809 scat protein_coding FLAG-S2-jox2017_R1_peak_526 chr3L 7379060 7379402 + 13 NA TTS (FBgn0016983) protein_coding-TTS (FBgn0016983) 1783 FBgn0035776 FBgn0035776 FBtr0076869 CG8564 protein_coding FLAG-S2-jox2017_R1_peak_1306 chrUextra 28907890 28908107 + 13 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_22 chr2L 3234025 3234164 + 13 NA Intergenic Intergenic -34474 FBgn0085422 FBgn0085422 FBtr0112637 CG34393 protein_coding FLAG-S2-jox2017_R1_peak_321 chr2R 8472862 8473107 + 13 NA exon (FBgn0022764, exon 2 of 12) protein_coding-exon (FBgn0022764, exon 2 of 12) 3614 FBgn0022764 FBgn0022764 FBtr0087889 Sin3A protein_coding FLAG-S2-jox2017_R1_peak_904 chr3R 19985569 19985708 + 13 NA exon (FBgn0039157, exon 3 of 15) protein_coding-exon (FBgn0039157, exon 3 of 15) 1579 FBgn0039157 FBgn0039157 FBtr0310445 Myo95E protein_coding FLAG-S2-jox2017_R1_peak_329 chr2R 9346452 9346728 + 13 NA exon (FBgn0000119, exon 3 of 7) protein_coding-exon (FBgn0000119, exon 3 of 7) 8421 FBgn0086757 FBgn0086757 FBtr0309887 cbs protein_coding FLAG-S2-jox2017_R1_peak_1208 chrUextra 28246054 28246281 + 13 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1212 chrUextra 28341821 28342030 + 13 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_234 chr2R 2465744 2465891 + 13 NA intron (FBgn0086655, intron 1 of 6) protein_coding-intron (FBgn0086655, intron 1 of 6) 22666 FBgn0033076 FBgn0033076 FBtr0305958 CG15233 protein_coding FLAG-S2-jox2017_R1_peak_320 chr2R 8405500 8405847 + 13 NA promoter-TSS (FBgn0033752) protein_coding-promoter-TSS (FBgn0033752) 750 FBgn0033751 FBgn0033751 FBtr0087941 CG8818 protein_coding FLAG-S2-jox2017_R1_peak_217 chr2R 915941 916144 + 13 NA Intergenic Intergenic 41673 FBgn0013348 FBgn0013348 FBtr0086102 TpnC41C protein_coding FLAG-S2-jox2017_R1_peak_421 chr2R 19223135 19223274 + 13 NA Intergenic Intergenic -5611 FBgn0050413 FBgn0050413 FBtr0072040 CG30413 protein_coding FLAG-S2-jox2017_R1_peak_501 chr3L 4299515 4299654 + 13 NA promoter-TSS (FBgn0066365) protein_coding-promoter-TSS (FBgn0066365) -80 FBgn0066365 FBgn0066365 FBtr0073343 dyl protein_coding FLAG-S2-jox2017_R1_peak_913 chr3R 21037604 21037743 + 13 NA exon (FBgn0039290, exon 5 of 6) protein_coding-exon (FBgn0039290, exon 5 of 6) 3237 FBgn0039291 FBgn0039291 FBtr0084873 CG13663 protein_coding FLAG-S2-jox2017_R1_peak_868 chr3R 16099180 16099319 + 13 NA intron (FBgn0262582, intron 2 of 18) protein_coding-intron (FBgn0262582, intron 2 of 18) -19738 FBgn0262582 FBgn0262582 FBtr0305031 cic protein_coding FLAG-S2-jox2017_R1_peak_284 chr2R 5749465 5749642 + 13 NA promoter-TSS (FBgn0027580) protein_coding-promoter-TSS (FBgn0027580) -1603 FBgn0050010 FBgn0050010 FBtr0088374 CG30010 protein_coding FLAG-S2-jox2017_R1_peak_762 chr3R 5982425 5982626 + 13 NA exon (FBgn0086359, exon 6 of 9) protein_coding-exon (FBgn0086359, exon 6 of 9) 4525 FBgn0037794 FBgn0037794 FBtr0082184 CG6254 protein_coding FLAG-S2-jox2017_R1_peak_530 chr3L 7741450 7741638 + 13 NA exon (FBgn0035816, exon 1 of 1) protein_coding-exon (FBgn0035816, exon 1 of 1) 1100 FBgn0035816 FBgn0035816 FBtr0076809 CG13685 protein_coding FLAG-S2-jox2017_R1_peak_483 chr3L 2596268 2596453 + 13 NA TTS (FBgn0016794) protein_coding-TTS (FBgn0016794) 579 FBgn0062517 FBgn0062517 FBtr0072928 CG16984 protein_coding FLAG-S2-jox2017_R1_peak_390 chr2R 16605712 16605851 + 13 NA intron (FBgn0040726, intron 1 of 7) protein_coding-intron (FBgn0040726, intron 1 of 7) 12334 FBgn0034546 FBgn0034546 FBtr0086240 CG13442 protein_coding FLAG-S2-jox2017_R1_peak_769 chr3R 6572066 6572205 + 13 NA intron (FBgn0004841, intron 1 of 6) protein_coding-intron (FBgn0004841, intron 1 of 7) 4815 FBgn0004841 FBgn0004841 FBtr0082315 Takr86C protein_coding FLAG-S2-jox2017_R1_peak_1414 chrX 12027427 12027566 + 13 NA intron (FBgn0259240, intron 1 of 18) protein_coding-intron (FBgn0259240, intron 1 of 18) 26263 FBgn0030376 FBgn0030376 FBtr0333729 CG2750 protein_coding FLAG-S2-jox2017_R1_peak_67 chr2L 6970646 6970836 + 13 NA exon (FBgn0016978, exon 2 of 2) protein_coding-exon (FBgn0016978, exon 2 of 2) 996 FBgn0016978 FBgn0016978 FBtr0079355 snRNP-U1-70K protein_coding FLAG-S2-jox2017_R1_peak_252 chr2R 3474430 3474595 + 13 NA promoter-TSS (FBgn0004133) protein_coding-promoter-TSS (FBgn0004133) 69 FBgn0004133 FBgn0004133 FBtr0310050 blow protein_coding FLAG-S2-jox2017_R1_peak_265 chr2R 4344278 4344793 + 13 NA exon (FBgn0002571, exon 2 of 4) protein_coding-exon (FBgn0002571, exon 2 of 4) 855 FBgn0002571 FBgn0002571 FBtr0088758 Mal-A3 protein_coding FLAG-S2-jox2017_R1_peak_98 chr2L 11318806 11319005 + 13 NA Intergenic Intergenic 11152 FBgn0263874 FBgn0263874 FBtr0329848 CR43721 ncRNA FLAG-S2-jox2017_R1_peak_837 chr3R 13627745 13628370 + 13 NA TTS (FBgn0038549) protein_coding-TTS (FBgn0038549) 925 FBgn0038548 FBgn0038548 FBtr0083527 CG17806 protein_coding FLAG-S2-jox2017_R1_peak_262 chr2R 4327081 4327396 + 13 NA intron (FBgn0033292, intron 6 of 6) protein_coding-intron (FBgn0033292, intron 8 of 8) 1388 FBgn0033292 FBgn0033292 FBtr0331956 Cyp4ad1 protein_coding FLAG-S2-jox2017_R1_peak_236 chr2R 2575556 2575801 + 13 NA exon (FBgn0050446, exon 3 of 8) protein_coding-exon (FBgn0050446, exon 3 of 8) 1789 FBgn0050446 FBgn0050446 FBtr0086142 Tdc2 protein_coding FLAG-S2-jox2017_R1_peak_538 chr3L 8473016 8473155 + 13 NA exon (FBgn0262719, exon 3 of 7) protein_coding-exon (FBgn0262719, exon 3 of 7) 27161 FBgn0262719 FBgn0262719 FBtr0308608 CG43163 protein_coding FLAG-S2-jox2017_R1_peak_445 chr2R 21004316 21004455 + 13 NA Intergenic Intergenic -12570 FBgn0050430 FBgn0050430 FBtr0072448 CG30430 protein_coding FLAG-S2-jox2017_R1_peak_709 chr3R 979289 979579 + 13 NA exon (FBgn0037295, exon 2 of 6) protein_coding-exon (FBgn0037295, exon 2 of 6) -5900 FBgn0037294 FBgn0037294 FBtr0078773 CG12590 protein_coding FLAG-S2-jox2017_R1_peak_55 chr2L 6183243 6183427 + 13 NA intron (FBgn0085409, intron 1 of 12) protein_coding-intron (FBgn0085409, intron 1 of 12) 4202 FBgn0085409 FBgn0085409 FBtr0112617 CG34380 protein_coding FLAG-S2-jox2017_R1_peak_123 chr2L 13824553 13824692 + 13 NA TTS (FBgn0000153) protein_coding-TTS (FBgn0000153) 3150 FBgn0004406 FBgn0004406 FBtr0080571 tam protein_coding FLAG-S2-jox2017_R1_peak_799 chr3R 10296235 10296374 + 13 NA intron (FBgn0086901, intron 2 of 15) protein_coding-intron (FBgn0086901, intron 1 of 14) 11106 FBgn0086901 FBgn0086901 FBtr0112631 cv-c protein_coding FLAG-S2-jox2017_R1_peak_465 chr3L 1697995 1698134 + 13 NA intron (FBgn0035260, intron 1 of 3) protein_coding-intron (FBgn0035260, intron 1 of 3) 3447 FBgn0035257 FBgn0035257 FBtr0072764 CG12011 protein_coding FLAG-S2-jox2017_R1_peak_668 chr3L 21533218 21533439 + 13 NA promoter-TSS (FBgn0263911) protein_coding-promoter-TSS (FBgn0263911) 366 FBgn0028663 FBgn0028663 FBtr0078369 VhaM9.7-b protein_coding FLAG-S2-jox2017_R1_peak_869 chr3R 16357952 16358238 + 13 NA Intergenic Intergenic 2331 FBgn0262146 FBgn0262146 FBtr0304129 MtnE protein_coding FLAG-S2-jox2017_R1_peak_1023 chrU 2312920 2313164 + 13 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_241 chr2R 3032312 3032496 + 13 NA Intergenic Intergenic -2799 FBgn0024294 FBgn0024294 FBtr0089041 Spn43Aa protein_coding FLAG-S2-jox2017_R1_peak_45 chr2L 5306611 5306800 + 13 NA intron (FBgn0016076, intron 1 of 2) protein_coding-intron (FBgn0016076, intron 1 of 2) 983 FBgn0016076 FBgn0016076 FBtr0300020 vri protein_coding FLAG-S2-jox2017_R1_peak_562 chr3L 10910924 10911140 + 13 NA Intergenic Intergenic -18809 FBgn0036111 FBgn0036111 FBtr0076251 Aps protein_coding FLAG-S2-jox2017_R1_peak_166 chr2L 18574026 18574165 + 13 NA Intergenic Intergenic -2447 FBgn0085370 FBgn0085370 FBtr0303162 Pde11 protein_coding FLAG-S2-jox2017_R1_peak_367 chr2R 14476141 14476431 + 13 NA intron (FBgn0050115, intron 1 of 8) protein_coding-intron (FBgn0050115, intron 1 of 7) 22974 FBgn0050115 FBgn0050115 FBtr0310055 GEFmeso protein_coding FLAG-S2-jox2017_R1_peak_369 chr2R 14663705 14663936 + 13 NA exon (FBgn0034390, exon 2 of 2) protein_coding-exon (FBgn0034390, exon 2 of 2) 658 FBgn0034390 FBgn0034390 FBtr0303846 CG15093 protein_coding FLAG-S2-jox2017_R1_peak_1467 chrXHet 179616 179755 + 13 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_109 chr2L 12167062 12167201 + 13 NA TTS (FBgn0051860) protein_coding-TTS (FBgn0051860) 2890 FBgn0051860 FBgn0051860 FBtr0302985 CG31860 protein_coding FLAG-S2-jox2017_R1_peak_1328 chrUextra 28979360 28979893 + 13 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_19 chr2L 3019050 3019189 + 13 NA promoter-TSS (FBgn0031489) protein_coding-promoter-TSS (FBgn0031489) 452 FBgn0031490 FBgn0031490 FBtr0331628 CG17264 protein_coding FLAG-S2-jox2017_R1_peak_1383 chrX 7045394 7045597 + 13 NA intron (FBgn0029939, intron 1 of 5) protein_coding-intron (FBgn0029939, intron 1 of 5) -1612 FBgn0047092 FBgn0047092 FBtr0071016 CR32730 ncRNA FLAG-S2-jox2017_R1_peak_628 chr3L 17567938 17568077 + 13 NA exon (FBgn0000567, exon 1 of 4) protein_coding-exon (FBgn0000567, exon 1 of 4) -8745 FBgn0086080 FBgn0086080 FBtr0114356 snoRNA:Me28S-A576 snoRNA FLAG-S2-jox2017_R1_peak_517 chr3L 6169328 6169527 + 13 NA exon (FBgn0035689, exon 3 of 10) protein_coding-exon (FBgn0035689, exon 3 of 10) 2079 FBgn0035689 FBgn0035689 FBtr0076998 CG7376 protein_coding FLAG-S2-jox2017_R1_peak_1462 chrX 21010893 21011046 + 13 NA exon (FBgn0083956, exon 15 of 15) protein_coding-exon (FBgn0083956, exon 15 of 15) 15989 FBgn0083956 FBgn0083956 FBtr0110826 CG34120 protein_coding FLAG-S2-jox2017_R1_peak_1463 chrX 21048592 21048731 + 13 NA Intergenic Intergenic -15619 FBgn0031163 FBgn0031163 FBtr0077256 CG14579 protein_coding FLAG-S2-jox2017_R1_peak_619 chr3L 16781823 16781962 + 13 NA exon (FBgn0036663, exon 14 of 15) protein_coding-exon (FBgn0036663, exon 14 of 15) -1851 FBgn0025582 FBgn0025582 FBtr0075345 Int6 protein_coding FLAG-S2-jox2017_R1_peak_642 chr3L 19205912 19206051 + 13 NA intron (FBgn0016797, intron 2 of 5) protein_coding-intron (FBgn0016797, intron 2 of 6) -16180 FBgn0264485 FBgn0264485 FBtr0332794 CR43893 ncRNA FLAG-S2-jox2017_R1_peak_75 chr2L 8446212 8446424 + 13 NA TTS (FBgn0051897) protein_coding-TTS (FBgn0051897) 3253 FBgn0027780 FBgn0027780 FBtr0089673 U26 protein_coding FLAG-S2-jox2017_R1_peak_981 chr3R 27062301 27062440 + 13 NA exon (FBgn0051005, exon 8 of 8) protein_coding-exon (FBgn0051005, exon 8 of 8) -1367 FBgn0039833 FBgn0039833 FBtr0085770 CG15564 protein_coding FLAG-S2-jox2017_R1_peak_386 chr2R 16124657 16124955 + 13 NA exon (FBgn0034485, exon 3 of 5) protein_coding-exon (FBgn0034485, exon 3 of 5) 1066 FBgn0034485 FBgn0034485 FBtr0086315 CG11099 protein_coding FLAG-S2-jox2017_R1_peak_212 chr2R 363759 363898 + 13 NA Intergenic Intergenic -5270 FBgn0260798 FBgn0260798 FBtr0302242 Gprk1 protein_coding FLAG-S2-jox2017_R1_peak_953 chr3R 24354674 24355113 + 13 NA exon (FBgn0003137, exon 6 of 12) protein_coding-exon (FBgn0003137, exon 6 of 12) -8656 FBgn0051051 FBgn0051051 FBtr0085296 CG31051 protein_coding FLAG-S2-jox2017_R1_peak_629 chr3L 17672882 17673086 + 13 NA intron (FBgn0085280, intron 3 of 3) protein_coding-intron (FBgn0085280, intron 3 of 3) 8088 FBgn0085280 FBgn0085280 FBtr0301012 CG34251 protein_coding FLAG-S2-jox2017_R1_peak_529 chr3L 7511060 7511289 + 13 NA promoter-TSS (FBgn0052372) protein_coding-promoter-TSS (FBgn0052372) -923 FBgn0052372 FBgn0052372 FBtr0076793 ltl protein_coding FLAG-S2-jox2017_R1_peak_135 chr2L 15406927 15407130 + 13 NA Intergenic Intergenic 18557 FBgn0001983 FBgn0001983 FBtr0080740 wor protein_coding FLAG-S2-jox2017_R1_peak_940 chr3R 22927558 22927697 + 13 NA exon (FBgn0039485, exon 3 of 5) protein_coding-exon (FBgn0039485, exon 3 of 5) 499 FBgn0039485 FBgn0039485 FBtr0085105 CG17189 protein_coding FLAG-S2-jox2017_R1_peak_962 chr3R 25563468 25563665 + 13 NA promoter-TSS (FBgn0039690) protein_coding-promoter-TSS (FBgn0039690) 910 FBgn0039689 FBgn0039689 FBtr0085473 CG7598 protein_coding FLAG-S2-jox2017_R1_peak_583 chr3L 13456727 13456866 + 13 NA exon (FBgn0036368, exon 14 of 15) protein_coding-exon (FBgn0036368, exon 14 of 15) -6458 FBgn0036367 FBgn0036367 FBtr0075824 CG10116 protein_coding FLAG-S2-jox2017_R1_peak_1227 chrUextra 28548646 28548869 + 13 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_167 chr2L 18579311 18579566 + 13 NA Intergenic Intergenic -7790 FBgn0085370 FBgn0085370 FBtr0303162 Pde11 protein_coding FLAG-S2-jox2017_R1_peak_835 chr3R 13385612 13385855 + 13 NA exon (FBgn0264005, exon 1 of 3) protein_coding-exon (FBgn0264005, exon 1 of 3) 1081 FBgn0264005 FBgn0264005 FBtr0330386 Hmx protein_coding FLAG-S2-jox2017_R1_peak_239 chr2R 2869826 2870152 + 13 NA exon (FBgn0050156, exon 1 of 3) protein_coding-exon (FBgn0050156, exon 1 of 3) 502 FBgn0050156 FBgn0050156 FBtr0086184 CG30156 protein_coding FLAG-S2-jox2017_R1_peak_499 chr3L 4151304 4151640 + 13 NA exon (FBgn0035501, exon 4 of 6) protein_coding-exon (FBgn0035501, exon 4 of 6) 2776 FBgn0035501 FBgn0035501 FBtr0332658 CG1299 protein_coding FLAG-S2-jox2017_R1_peak_782 chr3R 8866059 8866246 + 13 NA TTS (FBgn0038113) protein_coding-TTS (FBgn0038113) -1638 FBgn0038114 FBgn0038114 FBtr0300071 CG11670 protein_coding FLAG-S2-jox2017_R1_peak_1215 chrUextra 28352601 28352903 + 13 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_926 chr3R 22011733 22011952 + 13 NA TTS (FBgn0039417) protein_coding-TTS (FBgn0039417) 869 FBgn0051086 FBgn0051086 FBtr0084989 CG31086 protein_coding FLAG-S2-jox2017_R1_peak_237 chr2R 2738927 2739257 + 13 NA Intergenic Intergenic -12660 FBgn0040674 FBgn0040674 FBtr0086210 CG9445 protein_coding FLAG-S2-jox2017_R1_peak_807 chr3R 11068066 11068274 + 13 NA promoter-TSS (FBgn0001219) protein_coding-promoter-TSS (FBgn0001219) -212 FBgn0045035 FBgn0045035 FBtr0110874 tefu protein_coding FLAG-S2-jox2017_R1_peak_888 chr3R 18212225 18212364 + 13 NA TTS (FBgn0038956) protein_coding-TTS (FBgn0038956) 1900 FBgn0038956 FBgn0038956 FBtr0084235 CG5379 protein_coding FLAG-S2-jox2017_R1_peak_410 chr2R 17947833 17947972 + 13 NA promoter-TSS (FBgn0259142) protein_coding-promoter-TSS (FBgn0259142) 313 FBgn0034684 FBgn0034684 FBtr0071804 CG13501 protein_coding FLAG-S2-jox2017_R1_peak_226 chr2R 1858664 1858823 + 13 NA exon (FBgn0263855, exon 3 of 5) protein_coding-exon (FBgn0263855, exon 3 of 5) 3379 FBgn0263855 FBgn0263855 FBtr0086032 BubR1 protein_coding FLAG-S2-jox2017_R1_peak_1437 chrX 16306923 16307062 + 13 NA exon (FBgn0030747, exon 8 of 10) protein_coding-exon (FBgn0030747, exon 8 of 10) -2087 FBgn0030748 FBgn0030748 FBtr0334037 Traf-like protein_coding FLAG-S2-jox2017_R1_peak_213 chr2R 421804 422016 + 13 NA Intergenic Intergenic -12271 FBgn0046692 FBgn0046692 FBtr0308810 Stlk protein_coding FLAG-S2-jox2017_R1_peak_480 chr3L 2357124 2357549 + 13 NA Intergenic Intergenic -3221 FBgn0035332 FBgn0035332 FBtr0072888 CG13801 protein_coding FLAG-S2-jox2017_R1_peak_990 chr3R 27571461 27571731 + 13 NA promoter-TSS (FBgn0022349) protein_coding-promoter-TSS (FBgn0022349) 110 FBgn0000150 FBgn0000150 FBtr0085864 awd protein_coding FLAG-S2-jox2017_R1_peak_748 chr3R 4605245 4605411 + 13 NA TTS (FBgn0053189) protein_coding-TTS (FBgn0053189) 317 FBgn0053191 FBgn0053191 FBtr0081941 CG33191 protein_coding FLAG-S2-jox2017_R1_peak_93 chr2L 10601597 10601736 + 13 NA intron (FBgn0051721, intron 1 of 9) protein_coding-intron (FBgn0051721, intron 1 of 8) -20004 FBgn0085190 FBgn0085190 FBtr0112352 CG34161 protein_coding FLAG-S2-jox2017_R1_peak_934 chr3R 22475858 22475997 + 13 NA intron (FBgn0250908, intron 8 of 8) protein_coding-intron (FBgn0250908, intron 8 of 8) -6241 FBgn0243586 FBgn0243586 FBtr0085036 Tb protein_coding FLAG-S2-jox2017_R1_peak_264 chr2R 4342221 4342484 + 13 NA exon (FBgn0002569, exon 1 of 3) protein_coding-exon (FBgn0002569, exon 1 of 3) 1215 FBgn0002569 FBgn0002569 FBtr0088747 Mal-A2 protein_coding FLAG-S2-jox2017_R1_peak_638 chr3L 18583348 18583521 + 13 NA TTS (FBgn0036791) protein_coding-TTS (FBgn0036791) 1575 FBgn0036791 FBgn0036791 FBtr0075101 CG7271 protein_coding FLAG-S2-jox2017_R1_peak_32 chr2L 4361480 4361806 + 13 NA promoter-TSS (FBgn0026319) protein_coding-promoter-TSS (FBgn0026319) 8668 FBgn0031596 FBgn0031596 FBtr0077428 CG15429 protein_coding FLAG-S2-jox2017_R1_peak_1002 chr3RHet 2200384 2200523 + 13 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1295 chrUextra 28870125 28870332 + 13 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_396 chr2R 16880855 16881129 + 13 NA intron (FBgn0034569, intron 3 of 5) protein_coding-intron (FBgn0034569, intron 3 of 5) 894 FBgn0034569 FBgn0034569 FBtr0273414 dgt3 protein_coding FLAG-S2-jox2017_R1_peak_1415 chrX 12469725 12469930 + 13 NA intron (FBgn0030400, intron 1 of 3) protein_coding-intron (FBgn0030400, intron 1 of 3) 7399 FBgn0030400 FBgn0030400 FBtr0273245 CG11138 protein_coding FLAG-S2-jox2017_R1_peak_771 chr3R 6887138 6887314 + 13 NA Intergenic Intergenic -26916 FBgn0263403 FBgn0263403 FBtr0309182 CG43449 protein_coding FLAG-S2-jox2017_R1_peak_635 chr3L 18383114 18383299 + 13 NA Intergenic Intergenic 8329 FBgn0011706 FBgn0011706 FBtr0075120 rpr protein_coding FLAG-S2-jox2017_R1_peak_879 chr3R 17260216 17260355 + 13 NA promoter-TSS (FBgn0008651) protein_coding-promoter-TSS (FBgn0008651) -430 FBgn0008651 FBgn0008651 FBtr0300061 lbl protein_coding FLAG-S2-jox2017_R1_peak_1014 chrU 458071 458210 + 13 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_50 chr2L 5722545 5722818 + 13 NA exon (FBgn0024191, exon 2 of 3) protein_coding-exon (FBgn0024191, exon 2 of 3) 1630 FBgn0024191 FBgn0024191 FBtr0079134 sip1 protein_coding FLAG-S2-jox2017_R1_peak_751 chr3R 4867304 4867443 + 13 NA TTS (FBgn0010222) protein_coding-TTS (FBgn0010222) -2184 FBgn0002932 FBgn0002932 FBtr0300414 neur protein_coding FLAG-S2-jox2017_R1_peak_548 chr3L 9442246 9442385 + 13 NA exon (FBgn0035995, exon 3 of 6) protein_coding-exon (FBgn0035995, exon 3 of 6) 2351 FBgn0035995 FBgn0035995 FBtr0331583 CG3529 protein_coding FLAG-S2-jox2017_R1_peak_1448 chrX 18398839 18398978 + 13 NA exon (FBgn0010194, exon 1 of 1) protein_coding-exon (FBgn0010194, exon 1 of 1) 528 FBgn0010194 FBgn0010194 FBtr0074623 Wnt5 protein_coding FLAG-S2-jox2017_R1_peak_525 chr3L 7244595 7244954 + 13 NA exon (FBgn0263447, exon 3 of 3) ncRNA-exon (FBgn0263447, exon 3 of 3) 1034 FBgn0263447 FBgn0263447 FBtr0309297 CR43470 ncRNA FLAG-S2-jox2017_R1_peak_486 chr3L 2964903 2965183 + 12 NA Intergenic Intergenic 3509 FBgn0035382 FBgn0035382 FBtr0301497 Or63a protein_coding FLAG-S2-jox2017_R1_peak_1036 chrUextra 173411 173768 + 12 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_932 chr3R 22404507 22404814 + 12 NA intron (FBgn0263289, intron 14 of 24) protein_coding-intron (FBgn0263289, intron 14 of 22) -40185 FBgn0039434 FBgn0039434 FBtr0085029 TwdlM protein_coding FLAG-S2-jox2017_R1_peak_832 chr3R 12958363 12958569 + 12 NA promoter-TSS (FBgn0051266) protein_coding-promoter-TSS (FBgn0051266) 59 FBgn0051266 FBgn0051266 FBtr0300060 CG31266 protein_coding FLAG-S2-jox2017_R1_peak_232 chr2R 2138035 2138222 + 12 NA exon (FBgn0033075, exon 3 of 9) protein_coding-exon (FBgn0033075, exon 3 of 9) 5087 FBgn0033075 FBgn0033075 FBtr0114492 Pld protein_coding FLAG-S2-jox2017_R1_peak_987 chr3R 27218023 27218162 + 12 NA TTS (FBgn0039844) protein_coding-TTS (FBgn0039844) 1157 FBgn0051204 FBgn0051204 FBtr0085814 CG31204 protein_coding FLAG-S2-jox2017_R1_peak_248 chr2R 3275465 3275623 + 12 NA promoter-TSS (FBgn0000352) protein_coding-promoter-TSS (FBgn0000352) 825 FBgn0033160 FBgn0033160 FBtr0088966 CG11107 protein_coding FLAG-S2-jox2017_R1_peak_558 chr3L 10733373 10733695 + 12 NA Intergenic Intergenic -31558 FBgn0262890 FBgn0262890 FBtr0306304 CG43245 protein_coding FLAG-S2-jox2017_R1_peak_228 chr2R 1967832 1967971 + 12 NA TTS (FBgn0033062) protein_coding-TTS (FBgn0033062) 176 FBgn0033061 FBgn0033061 FBtr0086022 CG14590 protein_coding FLAG-S2-jox2017_R1_peak_30 chr2L 4123178 4123469 + 12 NA exon (FBgn0014033, exon 3 of 4) protein_coding-exon (FBgn0014033, exon 3 of 4) 1602 FBgn0014033 FBgn0014033 FBtr0077467 Sr-CI protein_coding FLAG-S2-jox2017_R1_peak_73 chr2L 7798148 7798287 + 12 NA exon (FBgn0031950, exon 2 of 4) protein_coding-exon (FBgn0031950, exon 2 of 4) 880 FBgn0031950 FBgn0031950 FBtr0079494 Herp protein_coding FLAG-S2-jox2017_R1_peak_568 chr3L 11688081 11688220 + 12 NA exon (FBgn0036194, exon 2 of 3) protein_coding-exon (FBgn0036194, exon 2 of 3) 1448 FBgn0036194 FBgn0036194 FBtr0332766 CG11652 protein_coding FLAG-S2-jox2017_R1_peak_723 chr3R 2171200 2171441 + 12 NA promoter-TSS (FBgn0037435) protein_coding-promoter-TSS (FBgn0037435) 322 FBgn0261789 FBgn0261789 FBtr0081737 SmD2 protein_coding FLAG-S2-jox2017_R1_peak_679 chr3L 22694584 22694817 + 12 NA Intergenic Intergenic 4370 FBgn0052453 FBgn0052453 FBtr0078521 CG32453 protein_coding FLAG-S2-jox2017_R1_peak_110 chr2L 13211561 13211700 + 12 NA TTS (FBgn0032482) protein_coding-TTS (FBgn0032482) 184 FBgn0032483 FBgn0032483 FBtr0080487 CG15482 protein_coding FLAG-S2-jox2017_R1_peak_196 chr2L 20781847 20781986 + 12 NA exon (FBgn0000251, exon 2 of 2) protein_coding-exon (FBgn0000251, exon 2 of 2) -5733 FBgn0032884 FBgn0032884 FBtr0081414 Pomp protein_coding FLAG-S2-jox2017_R1_peak_134 chr2L 15287798 15287937 + 12 NA Intergenic Intergenic 2855 FBgn0028853 FBgn0028853 FBtr0080729 CG15263 protein_coding FLAG-S2-jox2017_R1_peak_148 chr2L 16786523 16786767 + 12 NA exon (FBgn0264695, exon 17 of 18) protein_coding-exon (FBgn0264695, exon 17 of 18) 4076 FBgn0000406 FBgn0000406 FBtr0080932 Cyt-b5-r protein_coding FLAG-S2-jox2017_R1_peak_598 chr3L 14722008 14722147 + 12 NA exon (FBgn0036442, exon 1 of 1) protein_coding-exon (FBgn0036442, exon 1 of 1) 217 FBgn0036442 FBgn0036442 FBtr0075689 CG13473 protein_coding FLAG-S2-jox2017_R1_peak_777 chr3R 7842857 7843197 + 12 NA promoter-TSS (FBgn0037980) protein_coding-promoter-TSS (FBgn0037980) 205 FBgn0037981 FBgn0037981 FBtr0082537 Spt3 protein_coding FLAG-S2-jox2017_R1_peak_101 chr2L 11472339 11472680 + 12 NA Intergenic Intergenic -12198 FBgn0263087 FBgn0263087 FBtr0307103 CG43355 protein_coding FLAG-S2-jox2017_R1_peak_164 chr2L 18442553 18442842 + 12 NA exon (FBgn0261597, exon 2 of 2) protein_coding-exon (FBgn0261597, exon 2 of 2) 531 FBgn0261597 FBgn0261597 FBtr0081090 RpS26 protein_coding FLAG-S2-jox2017_R1_peak_89 chr2L 10301362 10301619 + 12 NA exon (FBgn0032211, exon 2 of 2) protein_coding-exon (FBgn0032211, exon 2 of 2) 114 FBgn0032211 FBgn0032211 FBtr0080067 CG13138 protein_coding FLAG-S2-jox2017_R1_peak_865 chr3R 15749092 15749332 + 12 NA exon (FBgn0038752, exon 2 of 5) protein_coding-exon (FBgn0038752, exon 2 of 5) -1825 FBgn0262971 FBgn0262971 FBtr0306726 CR43282 ncRNA FLAG-S2-jox2017_R1_peak_778 chr3R 7966217 7966356 + 12 NA intron (FBgn0037993, intron 6 of 6) protein_coding-intron (FBgn0037993, intron 6 of 6) 9208 FBgn0011905 FBgn0011905 FBtr0082544 tRNA:K5:87BC tRNA FLAG-S2-jox2017_R1_peak_796 chr3R 10084814 10085284 + 12 NA TTS (FBgn0038217) protein_coding-TTS (FBgn0038217) 659 FBgn0027083 FBgn0027083 FBtr0082895 Aats-met protein_coding FLAG-S2-jox2017_R1_peak_651 chr3L 19869148 19869336 + 12 NA exon (FBgn0036913, exon 6 of 15) protein_coding-exon (FBgn0036913, exon 6 of 15) 5003 FBgn0036913 FBgn0036913 FBtr0332151 CG8334 protein_coding FLAG-S2-jox2017_R1_peak_48 chr2L 5525365 5525504 + 12 NA promoter-TSS (FBgn0051989) protein_coding-promoter-TSS (FBgn0051989) 1295 FBgn0031711 FBgn0031711 FBtr0079096 CG6907 protein_coding FLAG-S2-jox2017_R1_peak_971 chr3R 26305047 26305423 + 12 NA TTS (FBgn0260440) protein_coding-TTS (FBgn0260440) 2829 FBgn0260440 FBgn0260440 FBtr0085651 spdo protein_coding FLAG-S2-jox2017_R1_peak_624 chr3L 17142038 17142204 + 12 NA intron (FBgn0260943, intron 6 of 14) protein_coding-intron (FBgn0260943, intron 6 of 14) -17842 FBgn0263381 FBgn0263381 FBtr0309067 CR43433 ncRNA FLAG-S2-jox2017_R1_peak_296 chr2R 6259994 6260255 + 12 NA intron (FBgn0261698, intron 2 of 27) protein_coding-intron (FBgn0261698, intron 2 of 28) 7490 FBgn0033515 FBgn0033515 FBtr0088323 Ir47a protein_coding FLAG-S2-jox2017_R1_peak_353 chr2R 12847145 12847424 + 12 NA TTS (FBgn0034172) protein_coding-TTS (FBgn0034172) 368 FBgn0034173 FBgn0034173 FBtr0087067 CG9010 protein_coding FLAG-S2-jox2017_R1_peak_803 chr3R 10450187 10450326 + 12 NA intron (FBgn0003169, intron 1 of 5) protein_coding-intron (FBgn0003169, intron 1 of 5) 1169 FBgn0003169 FBgn0003169 FBtr0330227 put protein_coding FLAG-S2-jox2017_R1_peak_678 chr3L 22441889 22442120 + 12 NA Intergenic Intergenic -5469 FBgn0037162 FBgn0037162 FBtr0078503 CG11449 protein_coding FLAG-S2-jox2017_R1_peak_539 chr3L 8576905 8577163 + 12 NA intron (FBgn0262508, intron 1 of 5) protein_coding-intron (FBgn0262508, intron 1 of 5) 5192 FBgn0262508 FBgn0262508 FBtr0304812 CG43078 protein_coding FLAG-S2-jox2017_R1_peak_1303 chrUextra 28899391 28899612 + 12 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_103 chr2L 11663288 11663427 + 12 NA Intergenic Intergenic 5897 FBgn0262786 FBgn0262786 FBtr0305896 CG43167 protein_coding FLAG-S2-jox2017_R1_peak_220 chr2R 1363708 1363847 + 12 NA intron (FBgn0050440, intron 6 of 7) protein_coding-intron (FBgn0050440, intron 6 of 7) 19564 FBgn0050440 FBgn0050440 FBtr0086076 CG30440 protein_coding FLAG-S2-jox2017_R1_peak_1402 chrX 10336905 10337044 + 12 NA TTS (FBgn0086046) snoRNA-TTS (FBgn0086046) 1048 FBgn0086046 FBgn0086046 FBtr0114322 snoRNA:Me28S-A1705 snoRNA FLAG-S2-jox2017_R1_peak_680 chr3L 22881598 22881844 + 12 NA promoter-TSS (FBgn0037203) protein_coding-promoter-TSS (FBgn0037203) -642 FBgn0037203 FBgn0037203 FBtr0078557 slif protein_coding FLAG-S2-jox2017_R1_peak_1008 chr4 985508 985679 + 12 NA exon (FBgn0039932, exon 3 of 5) protein_coding-exon (FBgn0039932, exon 3 of 5) 4407 FBgn0039932 FBgn0039932 FBtr0301336 CG11093 protein_coding FLAG-S2-jox2017_R1_peak_497 chr3L 4065205 4065721 + 12 NA TTS (FBgn0000449) protein_coding-TTS (FBgn0000449) 3171 FBgn0000449 FBgn0000449 FBtr0073205 dib protein_coding FLAG-S2-jox2017_R1_peak_382 chr2R 15954115 15954339 + 12 NA Intergenic Intergenic -44789 FBgn0004364 FBgn0004364 FBtr0086309 18w protein_coding FLAG-S2-jox2017_R1_peak_673 chr3L 22185986 22186125 + 12 NA intron (FBgn0037153, intron 2 of 10) protein_coding-intron (FBgn0037153, intron 2 of 10) 56865 FBgn0037153 FBgn0037153 FBtr0301492 olf413 protein_coding FLAG-S2-jox2017_R1_peak_1456 chrX 19756394 19756533 + 12 NA exon (FBgn0031077, exon 5 of 7) protein_coding-exon (FBgn0031077, exon 5 of 7) 3094 FBgn0031077 FBgn0031077 FBtr0308650 CG15618 protein_coding FLAG-S2-jox2017_R1_peak_864 chr3R 15688995 15689287 + 12 NA TTS (FBgn0038737) protein_coding-TTS (FBgn0038737) 1001 FBgn0038738 FBgn0038738 FBtr0083861 CG4572 protein_coding FLAG-S2-jox2017_R1_peak_207 chr2L 22554780 22554919 + 12 NA intron (FBgn0058006, intron 7 of 9) protein_coding-intron (FBgn0058006, intron 7 of 9) 82367 FBgn0040011 FBgn0040011 FBtr0302387 CG17494 protein_coding FLAG-S2-jox2017_R1_peak_68 chr2L 7016843 7017113 + 12 NA exon (FBgn0000053, exon 6 of 7) protein_coding-exon (FBgn0000053, exon 6 of 7) 3582 FBgn0263027 FBgn0263027 FBtr0306926 CG43322 protein_coding FLAG-S2-jox2017_R1_peak_979 chr3R 26950436 26950803 + 12 NA Intergenic Intergenic -1254 FBgn0039820 FBgn0039820 FBtr0085736 CG15554 protein_coding FLAG-S2-jox2017_R1_peak_689 chr3L 24035023 24035227 + 12 NA Intergenic Intergenic 13510 FBgn0058045 FBgn0058045 FBtr0331586 CG40045 protein_coding FLAG-S2-jox2017_R1_peak_945 chr3R 23412516 23412655 + 12 NA TTS (FBgn0040080) protein_coding-TTS (FBgn0040080) 4023 FBgn0040080 FBgn0040080 FBtr0085189 raps protein_coding FLAG-S2-jox2017_R1_peak_584 chr3L 13514305 13514538 + 12 NA TTS (FBgn0264001) protein_coding-TTS (FBgn0264001) -1716 FBgn0036377 FBgn0036377 FBtr0075817 CG10710 protein_coding FLAG-S2-jox2017_R1_peak_461 chr3L 1288821 1288990 + 12 NA TTS (FBgn0052333) protein_coding-TTS (FBgn0052333) -7008 FBgn0262937 FBgn0262937 FBtr0072663 Rabex-5 protein_coding FLAG-S2-jox2017_R1_peak_633 chr3L 18008290 18008432 + 12 NA intron (FBgn0000568, intron 3 of 7) protein_coding-intron (FBgn0000568, intron 1 of 5) -12183 FBgn0086081 FBgn0086081 FBtr0114357 snoRNA:Me28S-A30 snoRNA FLAG-S2-jox2017_R1_peak_155 chr2L 17825248 17825387 + 12 NA intron (FBgn0262018, intron 3 of 14) protein_coding-intron (FBgn0262018, intron 2 of 13) -12645 FBgn0262017 FBgn0262017 FBtr0303837 CG42830 protein_coding FLAG-S2-jox2017_R1_peak_640 chr3L 18946750 18946889 + 12 NA exon (FBgn0036834, exon 2 of 6) protein_coding-exon (FBgn0036834, exon 2 of 6) 3090 FBgn0036834 FBgn0036834 FBtr0075023 CG6836 protein_coding FLAG-S2-jox2017_R1_peak_705 chr3R 789680 789819 + 12 NA Intergenic Intergenic -1418 FBgn0037290 FBgn0037290 FBtr0078841 CG1124 protein_coding FLAG-S2-jox2017_R1_peak_931 chr3R 22381164 22381460 + 12 NA exon (FBgn0263289, exon 5 of 23) protein_coding-exon (FBgn0263289, exon 5 of 23) 19240 FBgn0263289 FBgn0263289 FBtr0308629 scrib protein_coding FLAG-S2-jox2017_R1_peak_328 chr2R 8903170 8903417 + 12 NA Intergenic Intergenic 19287 FBgn0008654 FBgn0008654 FBtr0087793 Su(z)2 protein_coding FLAG-S2-jox2017_R1_peak_822 chr3R 11975780 11976157 + 12 NA TTS (FBgn0038401) protein_coding-TTS (FBgn0038401) 1096 FBgn0038402 FBgn0038402 FBtr0301709 Fer2 protein_coding FLAG-S2-jox2017_R1_peak_401 chr2R 16956249 16956475 + 12 NA exon (FBgn0034582, exon 2 of 3) protein_coding-exon (FBgn0034582, exon 2 of 3) 451 FBgn0034582 FBgn0034582 FBtr0071542 Cht9 protein_coding FLAG-S2-jox2017_R1_peak_682 chr3L 23104013 23104152 + 12 NA Intergenic Intergenic 13643 FBgn0264492 FBgn0264492 FBtr0070044 CkIIalpha protein_coding FLAG-S2-jox2017_R1_peak_1262 chrUextra 28739484 28739703 + 12 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1034 chrU 10033813 10034034 + 12 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_950 chr3R 23833390 23833529 + 12 NA Intergenic Intergenic -16986 FBgn0039568 FBgn0039568 FBtr0085260 CG4815 protein_coding FLAG-S2-jox2017_R1_peak_1398 chrX 9972698 9972837 + 12 NA exon (FBgn0052685, exon 2 of 11) protein_coding-exon (FBgn0052685, exon 2 of 11) 3756 FBgn0052685 FBgn0052685 FBtr0308584 ZAP3 protein_coding FLAG-S2-jox2017_R1_peak_346 chr2R 11478533 11478839 + 12 NA Intergenic Intergenic -17190 FBgn0034033 FBgn0034033 FBtr0087349 CG8204 protein_coding FLAG-S2-jox2017_R1_peak_12 chr2L 2136260 2136399 + 12 NA exon (FBgn0004507, exon 3 of 4) protein_coding-exon (FBgn0004507, exon 3 of 4) 5514 FBgn0004507 FBgn0004507 FBtr0100485 GlyP protein_coding FLAG-S2-jox2017_R1_peak_233 chr2R 2390797 2391061 + 12 NA exon (FBgn0086655, exon 1 of 3) protein_coding-exon (FBgn0086655, exon 1 of 3) 30171 FBgn0264506 FBgn0264506 FBtr0332951 CR43905 ncRNA FLAG-S2-jox2017_R1_peak_211 chr2R 287429 287862 + 12 NA intron (FBgn0260798, intron 8 of 15) protein_coding-intron (FBgn0260798, intron 7 of 14) 70913 FBgn0260798 FBgn0260798 FBtr0302242 Gprk1 protein_coding FLAG-S2-jox2017_R1_peak_77 chr2L 8871681 8871982 + 12 NA Intergenic Intergenic 5064 FBgn0032072 FBgn0032072 FBtr0079738 CG9483 protein_coding FLAG-S2-jox2017_R1_peak_231 chr2R 2121326 2121468 + 12 NA exon (FBgn0263144, exon 2 of 7) protein_coding-exon (FBgn0263144, exon 2 of 7) 8265 FBgn0033074 FBgn0033074 FBtr0085994 tomboy40 protein_coding FLAG-S2-jox2017_R1_peak_811 chr3R 11190832 11190971 + 12 NA exon (FBgn0085433, exon 6 of 7) protein_coding-exon (FBgn0085433, exon 6 of 7) -1248 FBgn0026737 FBgn0026737 FBtr0112926 CG6171 protein_coding FLAG-S2-jox2017_R1_peak_450 chr2RHet 2811611 2811958 + 12 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_743 chr3R 4007338 4007483 + 12 NA promoter-TSS (FBgn0001138) protein_coding-promoter-TSS (FBgn0001138) -246 FBgn0001138 FBgn0001138 FBtr0330188 grn protein_coding FLAG-S2-jox2017_R1_peak_1343 chrX 1367989 1368326 + 12 NA TTS (FBgn0025383) protein_coding-TTS (FBgn0025383) 1599 FBgn0025383 FBgn0025383 FBtr0070257 CG14780 protein_coding FLAG-S2-jox2017_R1_peak_269 chr2R 4468650 4468972 + 12 NA exon (FBgn0259226, exon 3 of 6) protein_coding-exon (FBgn0259226, exon 3 of 6) -2820 FBgn0259226 FBgn0259226 FBtr0299788 CG42326 protein_coding FLAG-S2-jox2017_R1_peak_937 chr3R 22789150 22789457 + 12 NA promoter-TSS (FBgn0039465) protein_coding-promoter-TSS (FBgn0039465) 1244 FBgn0039465 FBgn0039465 FBtr0273310 Tsp97E protein_coding FLAG-S2-jox2017_R1_peak_1007 chr4 548596 548764 + 12 NA intron (FBgn0004607, intron 6 of 12) protein_coding-intron (FBgn0004607, intron 6 of 13) 26244 FBgn0004607 FBgn0004607 FBtr0332913 zfh2 protein_coding FLAG-S2-jox2017_R1_peak_1116 chrUextra 16063726 16063939 + 12 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_808 chr3R 11097924 11098166 + 12 NA exon (FBgn0000283, exon 4 of 5) protein_coding-exon (FBgn0000283, exon 4 of 5) 2467 FBgn0000283 FBgn0000283 FBtr0083127 Cp190 protein_coding FLAG-S2-jox2017_R1_peak_644 chr3L 19372663 19372802 + 12 NA intron (FBgn0052206, intron 4 of 13) protein_coding-intron (FBgn0052206, intron 4 of 13) -7948 FBgn0036868 FBgn0036868 FBtr0330281 CG14087 protein_coding FLAG-S2-jox2017_R1_peak_340 chr2R 10923542 10923835 + 12 NA exon (FBgn0029082, exon 2 of 12) protein_coding-exon (FBgn0029082, exon 2 of 12) -11344 FBgn0043530 FBgn0043530 FBtr0087420 Obp51a protein_coding FLAG-S2-jox2017_R1_peak_776 chr3R 7725801 7725954 + 12 NA exon (FBgn0037963, exon 8 of 16) protein_coding-exon (FBgn0037963, exon 8 of 16) 2573 FBgn0085336 FBgn0085336 FBtr0301079 CG34307 protein_coding FLAG-S2-jox2017_R1_peak_652 chr3L 20196451 20196616 + 12 NA TTS (FBgn0036949) protein_coding-TTS (FBgn0036949) 254 FBgn0036948 FBgn0036948 FBtr0074859 CG7298 protein_coding FLAG-S2-jox2017_R1_peak_51 chr2L 5762853 5763126 + 12 NA TTS (FBgn0031737) protein_coding-TTS (FBgn0031737) 3153 FBgn0031737 FBgn0031737 FBtr0079163 obst-E protein_coding FLAG-S2-jox2017_R1_peak_741 chr3R 3857124 3857403 + 12 NA promoter-TSS (FBgn0037541) protein_coding-promoter-TSS (FBgn0037541) -758 FBgn0037541 FBgn0037541 FBtr0300916 CG2747 protein_coding FLAG-S2-jox2017_R1_peak_936 chr3R 22776513 22776652 + 12 NA exon (FBgn0039464, exon 5 of 6) protein_coding-exon (FBgn0039464, exon 5 of 6) 2393 FBgn0039464 FBgn0039464 FBtr0085085 CG6330 protein_coding FLAG-S2-jox2017_R1_peak_1322 chrUextra 28946470 28946694 + 12 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_263 chr2R 4338309 4338551 + 12 NA exon (FBgn0002570, exon 1 of 3) protein_coding-exon (FBgn0002570, exon 1 of 3) 974 FBgn0002570 FBgn0002570 FBtr0088759 Mal-A1 protein_coding FLAG-S2-jox2017_R1_peak_801 chr3R 10435757 10436073 + 12 NA intron (FBgn0038246, intron 2 of 7) protein_coding-intron (FBgn0038246, intron 1 of 6) 551 FBgn0038246 FBgn0038246 FBtr0082961 CG14853 protein_coding FLAG-S2-jox2017_R1_peak_969 chr3R 26292972 26293272 + 12 NA intron (FBgn0039776, intron 1 of 8) protein_coding-intron (FBgn0039776, intron 1 of 8) 1350 FBgn0039776 FBgn0039776 FBtr0085650 PH4alphaEFB protein_coding FLAG-S2-jox2017_R1_peak_701 chr3R 603939 604079 + 12 NA TTS (FBgn0010750) protein_coding-TTS (FBgn0010750) 2044 FBgn0037275 FBgn0037275 FBtr0078881 CG14655 protein_coding FLAG-S2-jox2017_R1_peak_434 chr2R 20049372 20049685 + 12 NA promoter-TSS (FBgn0034985) protein_coding-promoter-TSS (FBgn0034985) -485 FBgn0034985 FBgn0034985 FBtr0072257 CG3328 protein_coding FLAG-S2-jox2017_R1_peak_1018 chrU 1089361 1089653 + 12 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_149 chr2L 16902726 16902874 + 12 NA promoter-TSS (FBgn0032620) protein_coding-promoter-TSS (FBgn0032620) -611 FBgn0032620 FBgn0032620 FBtr0080957 CG12288 protein_coding FLAG-S2-jox2017_R1_peak_889 chr3R 18290688 18290996 + 12 NA promoter-TSS (FBgn0038973) protein_coding-promoter-TSS (FBgn0038973) 128 FBgn0038972 FBgn0038972 FBtr0084254 CG7054 protein_coding FLAG-S2-jox2017_R1_peak_456 chr3L 482601 482962 + 12 NA intron (FBgn0001316, intron 4 of 18) protein_coding-intron (FBgn0001316, intron 5 of 18) 17670 FBgn0085296 FBgn0085296 FBtr0112462 CG34267 protein_coding FLAG-S2-jox2017_R1_peak_448 chr2RHet 152689 152828 + 12 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_860 chr3R 15488108 15488287 + 12 NA exon (FBgn0003011, exon 4 of 5) protein_coding-exon (FBgn0003011, exon 4 of 5) -2532 FBgn0038727 FBgn0038727 FBtr0301213 CG7432 protein_coding FLAG-S2-jox2017_R1_peak_243 chr2R 3107508 3107818 + 12 NA intron (FBgn0003090, intron 4 of 6) protein_coding-intron (FBgn0003090, intron 3 of 5) 14755 FBgn0026389 FBgn0026389 FBtr0089051 Or43a protein_coding FLAG-S2-jox2017_R1_peak_967 chr3R 25866107 25866247 + 12 NA promoter-TSS (FBgn0003510) protein_coding-promoter-TSS (FBgn0003510) 723 FBgn0003511 FBgn0003511 FBtr0085556 Sry-beta protein_coding FLAG-S2-jox2017_R1_peak_734 chr3R 3220299 3220540 + 12 NA Intergenic Intergenic 3215 FBgn0261502 FBgn0261502 FBtr0302394 CG42650 protein_coding FLAG-S2-jox2017_R1_peak_242 chr2R 3082594 3082886 + 12 NA intron (FBgn0003090, intron 2 of 6) protein_coding-intron (FBgn0003090, intron 1 of 5) 7973 FBgn0003090 FBgn0003090 FBtr0089044 pk protein_coding FLAG-S2-jox2017_R1_peak_189 chr2L 20333286 20333425 + 12 NA intron (FBgn0003475, intron 2 of 7) protein_coding-intron (FBgn0003475, intron 2 of 16) -15732 FBgn0263581 FBgn0263581 FBtr0309806 CR43606 ncRNA FLAG-S2-jox2017_R1_peak_223 chr2R 1603641 1603817 + 12 NA intron (FBgn0000099, intron 1 of 4) protein_coding-intron (FBgn0000099, intron 4 of 7) 825 FBgn0000099 FBgn0000099 FBtr0300504 ap protein_coding FLAG-S2-jox2017_R1_peak_899 chr3R 19543113 19543356 + 12 NA exon (FBgn0002922, exon 1 of 5) protein_coding-exon (FBgn0002922, exon 1 of 5) 845 FBgn0002922 FBgn0002922 FBtr0301445 nau protein_coding FLAG-S2-jox2017_R1_peak_634 chr3L 18086687 18086976 + 12 NA intron (FBgn0036773, intron 1 of 5) protein_coding-intron (FBgn0036773, intron 2 of 6) -6411 FBgn0085282 FBgn0085282 FBtr0112447 CG34253 protein_coding FLAG-S2-jox2017_R1_peak_403 chr2R 17425915 17426116 + 12 NA promoter-TSS (FBgn0050287) protein_coding-promoter-TSS (FBgn0050287) -495 FBgn0050287 FBgn0050287 FBtr0071695 CG30287 protein_coding FLAG-S2-jox2017_R1_peak_1336 chrX 792691 792830 + 12 NA intron (FBgn0264449, intron 1 of 12) protein_coding-intron (FBgn0264449, intron 1 of 11) 4243 FBgn0029539 FBgn0029539 FBtr0310165 CG11663 protein_coding FLAG-S2-jox2017_R1_peak_1457 chrX 19757465 19757710 + 12 NA exon (FBgn0031077, exon 5 of 7) protein_coding-exon (FBgn0031077, exon 5 of 7) 1970 FBgn0031077 FBgn0031077 FBtr0308650 CG15618 protein_coding FLAG-S2-jox2017_R1_peak_1094 chrUextra 12304168 12304343 + 12 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_80 chr2L 9107557 9107790 + 11 NA Intergenic Intergenic -4141 FBgn0032096 FBgn0032096 FBtr0079770 Or30a protein_coding FLAG-S2-jox2017_R1_peak_216 chr2R 836390 836601 + 11 NA promoter-TSS (FBgn0040849) protein_coding-promoter-TSS (FBgn0040849) -677 FBgn0040849 FBgn0040849 FBtr0299925 Ir41a protein_coding FLAG-S2-jox2017_R1_peak_596 chr3L 14495761 14496002 + 11 NA intron (FBgn0087007, intron 4 of 8) protein_coding-intron (FBgn0087007, intron 4 of 8) -15044 FBgn0036426 FBgn0036426 FBtr0290282 CG9592 protein_coding FLAG-S2-jox2017_R1_peak_222 chr2R 1502893 1503032 + 11 NA Intergenic Intergenic 6833 FBgn0039970 FBgn0039970 FBtr0307172 CG17508 protein_coding FLAG-S2-jox2017_R1_peak_1015 chrU 500386 500525 + 11 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_419 chr2R 18738360 18738709 + 11 NA exon (FBgn0034786, exon 3 of 6) protein_coding-exon (FBgn0034786, exon 3 of 6) 2686 FBgn0034786 FBgn0034786 FBtr0071910 CG13531 protein_coding FLAG-S2-jox2017_R1_peak_800 chr3R 10348954 10349093 + 11 NA TTS (FBgn0038236) protein_coding-TTS (FBgn0038236) 2252 FBgn0038236 FBgn0038236 FBtr0082954 Cyp313a1 protein_coding FLAG-S2-jox2017_R1_peak_589 chr3L 13979934 13980094 + 11 NA promoter-TSS (FBgn0036394) protein_coding-promoter-TSS (FBgn0036394) 294 FBgn0036393 FBgn0036393 FBtr0333024 CG17362 protein_coding FLAG-S2-jox2017_R1_peak_360 chr2R 13681836 13682035 + 11 NA exon (FBgn0028743, exon 1 of 7) protein_coding-exon (FBgn0028743, exon 1 of 7) 1548 FBgn0028743 FBgn0028743 FBtr0301142 CG5036 protein_coding FLAG-S2-jox2017_R1_peak_781 chr3R 8713728 8713867 + 11 NA Intergenic Intergenic -3920 FBgn0038089 FBgn0038089 FBtr0082683 d-cup protein_coding FLAG-S2-jox2017_R1_peak_695 chr3R 209465 209604 + 11 NA exon (FBgn0037240, exon 3 of 8) protein_coding-exon (FBgn0037240, exon 3 of 8) 2502 FBgn0037240 FBgn0037240 FBtr0078917 Cont protein_coding FLAG-S2-jox2017_R1_peak_444 chr2R 20974701 20974840 + 11 NA exon (FBgn0003715, exon 4 of 4) protein_coding-exon (FBgn0003715, exon 4 of 4) -2927 FBgn0004919 FBgn0004919 FBtr0306330 gol protein_coding FLAG-S2-jox2017_R1_peak_871 chr3R 16449916 16450055 + 11 NA exon (FBgn0001169, exon 4 of 6) protein_coding-exon (FBgn0001169, exon 4 of 6) 2320 FBgn0001169 FBgn0001169 FBtr0083916 H protein_coding FLAG-S2-jox2017_R1_peak_96 chr2L 11105308 11105526 + 11 NA exon (FBgn0032341, exon 3 of 7) protein_coding-exon (FBgn0032341, exon 3 of 7) 1235 FBgn0032341 FBgn0032341 FBtr0306139 Reps protein_coding FLAG-S2-jox2017_R1_peak_479 chr3L 2288332 2288665 + 11 NA intron (FBgn0264002, intron 1 of 3) protein_coding-intron (FBgn0264002, intron 1 of 3) 5615 FBgn0264002 FBgn0264002 FBtr0330358 DmsR-2 protein_coding FLAG-S2-jox2017_R1_peak_274 chr2R 4918614 4918807 + 11 NA promoter-TSS (FBgn0033365) protein_coding-promoter-TSS (FBgn0033365) -164 FBgn0033365 FBgn0033365 FBtr0110892 CG8170 protein_coding FLAG-S2-jox2017_R1_peak_946 chr3R 23414797 23414936 + 11 NA exon (FBgn0039527, exon 4 of 5) protein_coding-exon (FBgn0039527, exon 4 of 5) 4394 FBgn0039527 FBgn0039527 FBtr0085202 CG5639 protein_coding FLAG-S2-jox2017_R1_peak_54 chr2L 6043395 6043621 + 11 NA exon (FBgn0000052, exon 3 of 4) protein_coding-exon (FBgn0000052, exon 3 of 4) 2085 FBgn0000052 FBgn0000052 FBtr0079221 ade2 protein_coding FLAG-S2-jox2017_R1_peak_809 chr3R 11155761 11155917 + 11 NA promoter-TSS (FBgn0038319) protein_coding-promoter-TSS (FBgn0038319) -623 FBgn0038319 FBgn0038319 FBtr0083084 mRpL9 protein_coding FLAG-S2-jox2017_R1_peak_824 chr3R 12176926 12177065 + 11 NA TTS (FBgn0027095) protein_coding-TTS (FBgn0027095) 1869 FBgn0027095 FBgn0027095 FBtr0083283 Manf protein_coding FLAG-S2-jox2017_R1_peak_1465 chrX 22080205 22080398 + 11 NA Intergenic Intergenic -45756 FBgn0052499 FBgn0052499 FBtr0077362 Cda4 protein_coding FLAG-S2-jox2017_R1_peak_717 chr3R 1359770 1359909 + 11 NA exon (FBgn0010051, exon 13 of 19) protein_coding-exon (FBgn0010051, exon 13 of 19) 6538 FBgn0010051 FBgn0010051 FBtr0078687 Itp-r83A protein_coding FLAG-S2-jox2017_R1_peak_384 chr2R 16048872 16049146 + 11 NA Intergenic Intergenic 15371 FBgn0034481 FBgn0034481 FBtr0300692 CG11041 protein_coding FLAG-S2-jox2017_R1_peak_885 chr3R 18038268 18038499 + 11 NA exon (FBgn0038934, exon 2 of 4) protein_coding-exon (FBgn0038934, exon 2 of 4) 837 FBgn0038934 FBgn0038934 FBtr0305038 Gld2 protein_coding FLAG-S2-jox2017_R1_peak_593 chr3L 14241250 14241433 + 11 NA Intergenic Intergenic 11606 FBgn0036417 FBgn0036417 FBtr0075741 CG7906 protein_coding FLAG-S2-jox2017_R1_peak_218 chr2R 1240562 1240701 + 11 NA promoter-TSS (FBgn0033020) protein_coding-promoter-TSS (FBgn0033020) -868 FBgn0033020 FBgn0033020 FBtr0086089 CG10396 protein_coding FLAG-S2-jox2017_R1_peak_1427 chrX 15350778 15351079 + 11 NA exon (FBgn0004391, exon 7 of 8) protein_coding-exon (FBgn0004391, exon 7 of 8) 551 FBgn0004391 FBgn0004391 FBtr0074078 shtd protein_coding FLAG-S2-jox2017_R1_peak_92 chr2L 10453300 10453584 + 11 NA exon (FBgn0032253, exon 6 of 6) protein_coding-exon (FBgn0032253, exon 6 of 6) -1241 FBgn0065110 FBgn0065110 FBtr0100097 ppk10 protein_coding FLAG-S2-jox2017_R1_peak_850 chr3R 14733767 14734000 + 11 NA exon (FBgn0038659, exon 2 of 2) protein_coding-exon (FBgn0038659, exon 2 of 2) 1551 FBgn0038659 FBgn0038659 FBtr0083699 endoA protein_coding FLAG-S2-jox2017_R1_peak_999 chr3RHet 1698615 1698890 + 11 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_954 chr3R 24465633 24465772 + 11 NA Intergenic Intergenic 2911 FBgn0039592 FBgn0039592 FBtr0100373 CG14062 protein_coding FLAG-S2-jox2017_R1_peak_129 chr2L 14322253 14322465 + 11 NA exon (FBgn0261563, exon 8 of 16) protein_coding-exon (FBgn0261563, exon 8 of 16) -6070 FBgn0261529 FBgn0261529 FBtr0080623 ms(2)34Fe protein_coding FLAG-S2-jox2017_R1_peak_169 chr2L 18813875 18814014 + 11 NA TTS (FBgn0040993) protein_coding-TTS (FBgn0040993) 935 FBgn0259201 FBgn0259201 FBtr0299686 CG42305 protein_coding FLAG-S2-jox2017_R1_peak_210 chr2L 22969464 22969663 + 11 NA Intergenic Intergenic 7826 FBgn0262887 FBgn0262887 FBtr0306299 CR43242 ncRNA FLAG-S2-jox2017_R1_peak_472 chr3L 2034259 2034592 + 11 NA Intergenic Intergenic 3799 FBgn0259701 FBgn0259701 FBtr0309792 CG42355 protein_coding FLAG-S2-jox2017_R1_peak_424 chr2R 19387418 19387766 + 11 NA exon (FBgn0034869, exon 1 of 1) protein_coding-exon (FBgn0034869, exon 1 of 1) 418 FBgn0034869 FBgn0034869 FBtr0072056 CG13558 protein_coding FLAG-S2-jox2017_R1_peak_235 chr2R 2567562 2567908 + 11 NA promoter-TSS (FBgn0033092) protein_coding-promoter-TSS (FBgn0033092) 156 FBgn0259977 FBgn0259977 FBtr0086143 Tdc1 protein_coding FLAG-S2-jox2017_R1_peak_203 chr2L 21914604 21914743 + 11 NA exon (FBgn0051600, exon 4 of 4) protein_coding-exon (FBgn0051600, exon 4 of 4) 685 FBgn0051600 FBgn0051600 FBtr0085949 CG31600 protein_coding FLAG-S2-jox2017_R1_peak_395 chr2R 16860394 16860617 + 11 NA TTS (FBgn0034563) protein_coding-TTS (FBgn0034563) 997 FBgn0034563 FBgn0034563 FBtr0071555 CG15649 protein_coding FLAG-S2-jox2017_R1_peak_14 chr2L 2330521 2330808 + 11 NA exon (FBgn0031413, exon 2 of 6) protein_coding-exon (FBgn0031413, exon 2 of 6) 18984 FBgn0031414 FBgn0031414 FBtr0330694 eys protein_coding FLAG-S2-jox2017_R1_peak_531 chr3L 8166457 8166720 + 11 NA exon (FBgn0040290, exon 2 of 6) protein_coding-exon (FBgn0040290, exon 2 of 6) 2490 FBgn0040290 FBgn0040290 FBtr0076729 RecQ4 protein_coding FLAG-S2-jox2017_R1_peak_1430 chrX 15467664 15467913 + 11 NA exon (FBgn0030655, exon 1 of 3) protein_coding-exon (FBgn0030655, exon 1 of 3) 830 FBgn0030655 FBgn0030655 FBtr0074071 CG9213 protein_coding FLAG-S2-jox2017_R1_peak_24 chr2L 3326813 3326952 + 11 NA TTS (FBgn0053281) protein_coding-TTS (FBgn0053281) -1021 FBgn0053282 FBgn0053282 FBtr0113458 CG33282 protein_coding FLAG-S2-jox2017_R1_peak_114 chr2L 13344764 13344903 + 11 NA Intergenic Intergenic -2958 FBgn0032505 FBgn0032505 FBtr0080464 CG16826 protein_coding FLAG-S2-jox2017_R1_peak_667 chr3L 21400540 21400739 + 11 NA promoter-TSS (FBgn0002842) protein_coding-promoter-TSS (FBgn0002842) -801 FBgn0002842 FBgn0002842 FBtr0078401 sa protein_coding FLAG-S2-jox2017_R1_peak_744 chr3R 4088625 4088764 + 11 NA exon (FBgn0010173, exon 3 of 4) protein_coding-exon (FBgn0010173, exon 3 of 4) -1074 FBgn0037560 FBgn0037560 FBtr0310082 CR18228 pseudogene FLAG-S2-jox2017_R1_peak_364 chr2R 14057264 14057501 + 11 NA exon (FBgn0027836, exon 5 of 5) protein_coding-exon (FBgn0027836, exon 5 of 5) 1593 FBgn0027836 FBgn0027836 FBtr0086773 Dgp-1 protein_coding FLAG-S2-jox2017_R1_peak_631 chr3L 17815785 17815996 + 11 NA promoter-TSS (FBgn0001134) protein_coding-promoter-TSS (FBgn0001134) 44 FBgn0261401 FBgn0261401 FBtr0302292 Ir75c protein_coding FLAG-S2-jox2017_R1_peak_702 chr3R 604485 604799 + 11 NA exon (FBgn0037275, exon 2 of 3) protein_coding-exon (FBgn0037275, exon 2 of 3) 1411 FBgn0037275 FBgn0037275 FBtr0078881 CG14655 protein_coding FLAG-S2-jox2017_R1_peak_336 chr2R 10170723 10171033 + 11 NA intron (FBgn0263397, intron 3 of 15) protein_coding-intron (FBgn0263397, intron 2 of 14) -4791 FBgn0263397 FBgn0263397 FBtr0290292 Ih protein_coding FLAG-S2-jox2017_R1_peak_74 chr2L 8390537 8390864 + 11 NA TTS (FBgn0041717) snRNA-TTS (FBgn0041717) 976 FBgn0041717 FBgn0041717 FBtr0079659 snRNA:U6atac:29B snRNA FLAG-S2-jox2017_R1_peak_279 chr2R 5174651 5174897 + 11 NA promoter-TSS (FBgn0033400) protein_coding-promoter-TSS (FBgn0033400) 442 FBgn0033401 FBgn0033401 FBtr0088595 CG1968 protein_coding FLAG-S2-jox2017_R1_peak_991 chr3R 27609661 27609851 + 11 NA exon (FBgn0005632, exon 6 of 18) protein_coding-exon (FBgn0005632, exon 6 of 18) 6616 FBgn0005632 FBgn0005632 FBtr0307549 faf protein_coding FLAG-S2-jox2017_R1_peak_154 chr2L 17663247 17663386 + 11 NA intron (FBgn0015609, intron 16 of 22) protein_coding-intron (FBgn0015609, intron 15 of 21) 35457 FBgn0262356 FBgn0262356 FBtr0304636 CG43054 protein_coding FLAG-S2-jox2017_R1_peak_172 chr2L 19081898 19082037 + 11 NA exon (FBgn0002023, exon 3 of 8) protein_coding-exon (FBgn0002023, exon 3 of 8) -2939 FBgn0032754 FBgn0032754 FBtr0081171 CG10700 protein_coding FLAG-S2-jox2017_R1_peak_453 chr2RHet 3231205 3231376 + 11 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_409 chr2R 17821024 17821248 + 11 NA intron (FBgn0085397, intron 5 of 6) protein_coding-intron (FBgn0085397, intron 3 of 4) 3232 FBgn0263999 FBgn0263999 FBtr0334012 CG43742 protein_coding FLAG-S2-jox2017_R1_peak_1372 chrX 5561114 5561253 + 11 NA intron (FBgn0028474, intron 2 of 5) protein_coding-intron (FBgn0028474, intron 2 of 5) 1056 FBgn0028474 FBgn0028474 FBtr0070799 CG4119 protein_coding FLAG-S2-jox2017_R1_peak_532 chr3L 8232737 8233066 + 11 NA exon (FBgn0035861, exon 2 of 4) protein_coding-exon (FBgn0035861, exon 2 of 4) 800 FBgn0035861 FBgn0035861 FBtr0076718 CG7213 protein_coding FLAG-S2-jox2017_R1_peak_21 chr2L 3055217 3055399 + 11 NA exon (FBgn0042627, exon 6 of 7) protein_coding-exon (FBgn0042627, exon 6 of 7) -3154 FBgn0027571 FBgn0027571 FBtr0290093 CG3523 protein_coding FLAG-S2-jox2017_R1_peak_244 chr2R 3163524 3164041 + 11 NA exon (FBgn0033155, exon 2 of 4) protein_coding-exon (FBgn0033155, exon 2 of 4) 1798 FBgn0033155 FBgn0033155 FBtr0089021 Br140 protein_coding FLAG-S2-jox2017_R1_peak_349 chr2R 12176703 12176842 + 11 NA promoter-TSS (FBgn0028424) protein_coding-promoter-TSS (FBgn0028424) -58 FBgn0028424 FBgn0028424 FBtr0087139 JhI-26 protein_coding FLAG-S2-jox2017_R1_peak_785 chr3R 8991185 8991324 + 11 NA Intergenic Intergenic -9868 FBgn0260793 FBgn0260793 FBtr0330143 2mit protein_coding FLAG-S2-jox2017_R1_peak_849 chr3R 14678275 14678414 + 11 NA promoter-TSS (FBgn0051226) protein_coding-promoter-TSS (FBgn0051226) -824 FBgn0051226 FBgn0051226 FBtr0083676 CG31226 protein_coding FLAG-S2-jox2017_R1_peak_943 chr3R 23196465 23196881 + 11 NA exon (FBgn0260487, exon 7 of 7) protein_coding-exon (FBgn0260487, exon 7 of 7) -1086 FBgn0263453 FBgn0263453 FBtr0309308 CR43476 ncRNA FLAG-S2-jox2017_R1_peak_625 chr3L 17209777 17209916 + 11 NA intron (FBgn0260943, intron 3 of 14) protein_coding-intron (FBgn0260943, intron 3 of 14) 21466 FBgn0260943 FBgn0260943 FBtr0113427 Rbp6 protein_coding FLAG-S2-jox2017_R1_peak_1370 chrX 5336919 5337110 + 11 NA Intergenic Intergenic -3680 FBgn0029768 FBgn0029768 FBtr0070778 SPR protein_coding FLAG-S2-jox2017_R1_peak_415 chr2R 18324726 18324910 + 11 NA Intergenic Intergenic 9834 FBgn0034730 FBgn0034730 FBtr0071830 ppk12 protein_coding FLAG-S2-jox2017_R1_peak_392 chr2R 16734551 16734690 + 11 NA TTS (FBgn0034552) protein_coding-TTS (FBgn0034552) 2804 FBgn0034552 FBgn0034552 FBtr0071561 CG17999 protein_coding FLAG-S2-jox2017_R1_peak_666 chr3L 21346524 21346663 + 11 NA exon (FBgn0052436, exon 5 of 5) protein_coding-exon (FBgn0052436, exon 5 of 5) 3002 FBgn0037078 FBgn0037078 FBtr0306795 CG12971 protein_coding FLAG-S2-jox2017_R1_peak_387 chr2R 16153358 16153531 + 11 NA promoter-TSS (FBgn0264360) ncRNA-promoter-TSS (FBgn0264360) -794 FBgn0264360 FBgn0264360 FBtr0332257 CR43812 ncRNA FLAG-S2-jox2017_R1_peak_318 chr2R 8303369 8303627 + 11 NA promoter-TSS (FBgn0033732) protein_coding-promoter-TSS (FBgn0033732) -462 FBgn0033732 FBgn0033732 FBtr0087925 CG13157 protein_coding FLAG-S2-jox2017_R1_peak_18 chr2L 2876171 2876310 + 11 NA TTS (FBgn0031479) protein_coding-TTS (FBgn0031479) 1368 FBgn0031478 FBgn0031478 FBtr0077629 CG8814 protein_coding FLAG-S2-jox2017_R1_peak_458 chr3L 831594 831890 + 11 NA TTS (FBgn0083057) snoRNA-TTS (FBgn0083057) 266 FBgn0083057 FBgn0083057 FBtr0113600 snoRNA:Psi18S-110 snoRNA FLAG-S2-jox2017_R1_peak_704 chr3R 721434 721645 + 11 NA Intergenic Intergenic -10809 FBgn0004913 FBgn0004913 FBtr0100159 Gnf1 protein_coding FLAG-S2-jox2017_R1_peak_27 chr2L 3825833 3826124 + 11 NA exon (FBgn0003430, exon 1 of 1) protein_coding-exon (FBgn0003430, exon 1 of 1) 298 FBgn0003430 FBgn0003430 FBtr0077499 slp1 protein_coding FLAG-S2-jox2017_R1_peak_1084 chrUextra 10843186 10843401 + 11 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_876 chr3R 16961821 16962201 + 11 NA promoter-TSS (FBgn0038862) protein_coding-promoter-TSS (FBgn0038862) -193 FBgn0038862 FBgn0038862 FBtr0304714 Ubpy protein_coding FLAG-S2-jox2017_R1_peak_516 chr3L 6150374 6150513 + 11 NA promoter-TSS (FBgn0035685) protein_coding-promoter-TSS (FBgn0035685) 34 FBgn0035685 FBgn0035685 FBtr0077020 CG13297 protein_coding FLAG-S2-jox2017_R1_peak_615 chr3L 16490731 16491092 + 11 NA exon (FBgn0003515, exon 1 of 7) protein_coding-exon (FBgn0003515, exon 1 of 7) 160 FBgn0003515 FBgn0003515 FBtr0075391 st protein_coding FLAG-S2-jox2017_R1_peak_204 chr2L 21965827 21965966 + 11 NA Intergenic Intergenic 27037 FBgn0032969 FBgn0032969 FBtr0308090 CG2528 protein_coding FLAG-S2-jox2017_R1_peak_4 chr2L 552516 552686 + 11 NA promoter-TSS (FBgn0005660) protein_coding-promoter-TSS (FBgn0005660) -3239 FBgn0005660 FBgn0005660 FBtr0112854 Ets21C protein_coding FLAG-S2-jox2017_R1_peak_286 chr2R 5903151 5903309 + 11 NA intron (FBgn0022382, intron 2 of 9) protein_coding-intron (FBgn0022382, intron 2 of 9) -3589 FBgn0263557 FBgn0263557 FBtr0309691 mir-4967 pre_miRNA FLAG-S2-jox2017_R1_peak_519 chr3L 6227724 6227977 + 11 NA promoter-TSS (FBgn0261631) protein_coding-promoter-TSS (FBgn0261631) -694 FBgn0261631 FBgn0261631 FBtr0302996 CG42714 protein_coding FLAG-S2-jox2017_R1_peak_411 chr2R 18004117 18004256 + 11 NA promoter-TSS (FBgn0243516) protein_coding-promoter-TSS (FBgn0243516) -343 FBgn0243516 FBgn0243516 FBtr0302295 Vrp1 protein_coding FLAG-S2-jox2017_R1_peak_911 chr3R 20757909 20758048 + 11 NA intron (FBgn0039252, intron 1 of 1) protein_coding-intron (FBgn0039252, intron 1 of 1) 239 FBgn0039252 FBgn0039252 FBtr0084748 CG11771 protein_coding FLAG-S2-jox2017_R1_peak_1003 chr4 87885 88024 + 11 NA promoter-TSS (FBgn0017545) protein_coding-promoter-TSS (FBgn0017545) -121 FBgn0017545 FBgn0017545 FBtr0089176 RpS3A protein_coding FLAG-S2-jox2017_R1_peak_972 chr3R 26310155 26310294 + 11 NA exon (FBgn0039776, exon 6 of 9) protein_coding-exon (FBgn0039776, exon 6 of 9) 3426 FBgn0039777 FBgn0039777 FBtr0085690 Jon99Fii protein_coding FLAG-S2-jox2017_R1_peak_1143 chrUextra 23415886 23416115 + 11 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1010 chr4 1183148 1183334 + 11 NA intron (FBgn0039925, intron 2 of 4) protein_coding-intron (FBgn0039925, intron 2 of 4) 15149 FBgn0039925 FBgn0039925 FBtr0089196 Kif3C protein_coding FLAG-S2-jox2017_R1_peak_478 chr3L 2262205 2262487 + 11 NA promoter-TSS (FBgn0035323) protein_coding-promoter-TSS (FBgn0035323) 318 FBgn0015360 FBgn0015360 FBtr0072904 oxt protein_coding FLAG-S2-jox2017_R1_peak_357 chr2R 13603580 13603821 + 11 NA exon (FBgn0028494, exon 2 of 4) protein_coding-exon (FBgn0028494, exon 2 of 4) -6144 FBgn0034263 FBgn0034263 FBtr0086859 CG10934 protein_coding FLAG-S2-jox2017_R1_peak_399 chr2R 16950372 16950611 + 11 NA TTS (FBgn0050293) protein_coding-TTS (FBgn0050293) 1340 FBgn0034580 FBgn0034580 FBtr0071534 Cht8 protein_coding FLAG-S2-jox2017_R1_peak_385 chr2R 16117330 16117588 + 11 NA TTS (FBgn0011869) tRNA-TTS (FBgn0011869) 473 FBgn0011869 FBgn0011869 FBtr0086312 tRNA:G3:56EFa tRNA FLAG-S2-jox2017_R1_peak_938 chr3R 22815436 22815575 + 11 NA promoter-TSS (FBgn0051076) protein_coding-promoter-TSS (FBgn0051076) 69 FBgn0051076 FBgn0051076 FBtr0307505 CG31076 protein_coding FLAG-S2-jox2017_R1_peak_514 chr3L 6004767 6005030 + 11 NA promoter-TSS (FBgn0035657) protein_coding-promoter-TSS (FBgn0035657) -777 FBgn0035657 FBgn0035657 FBtr0077069 alphaKap4 protein_coding FLAG-S2-jox2017_R1_peak_1016 chrU 593257 593467 + 11 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_69 chr2L 7065677 7066015 + 11 NA promoter-TSS (FBgn0031886) protein_coding-promoter-TSS (FBgn0031886) -9 FBgn0031886 FBgn0031886 FBtr0079424 Nuf2 protein_coding FLAG-S2-jox2017_R1_peak_1017 chrU 594171 594460 + 11 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_563 chr3L 10977288 10977483 + 11 NA exon (FBgn0013469, exon 3 of 3) protein_coding-exon (FBgn0013469, exon 3 of 3) 11637 FBgn0036112 FBgn0036112 FBtr0076194 CG14147 protein_coding FLAG-S2-jox2017_R1_peak_205 chr2L 21980248 21980488 + 11 NA Intergenic Intergenic 12565 FBgn0032969 FBgn0032969 FBtr0308090 CG2528 protein_coding FLAG-S2-jox2017_R1_peak_476 chr3L 2213814 2214110 + 11 NA Intergenic Intergenic -1459 FBgn0035316 FBgn0035316 FBtr0072911 CG15878 protein_coding FLAG-S2-jox2017_R1_peak_915 chr3R 21141599 21141801 + 10 NA TTS (FBgn0039324) protein_coding-TTS (FBgn0039324) 138 FBgn0039323 FBgn0039323 FBtr0289942 CG10559 protein_coding FLAG-S2-jox2017_R1_peak_870 chr3R 16433854 16433993 + 10 NA exon (FBgn0023097, exon 4 of 10) protein_coding-exon (FBgn0023097, exon 4 of 10) -3369 FBgn0051506 FBgn0051506 FBtr0083943 tRNA:CR31506 tRNA FLAG-S2-jox2017_R1_peak_111 chr2L 13238795 13239032 + 10 NA exon (FBgn0027586, exon 3 of 4) protein_coding-exon (FBgn0027586, exon 3 of 4) -1220 FBgn0032494 FBgn0032494 FBtr0080450 CG5945 protein_coding FLAG-S2-jox2017_R1_peak_873 chr3R 16862067 16862206 + 10 NA exon (FBgn0013812, exon 10 of 28) protein_coding-exon (FBgn0013812, exon 10 of 28) 6005 FBgn0013812 FBgn0013812 FBtr0273236 Dhc93AB protein_coding FLAG-S2-jox2017_R1_peak_333 chr2R 9856446 9856657 + 10 NA TTS (FBgn0033887) protein_coding-TTS (FBgn0033887) 699 FBgn0020766 FBgn0020766 FBtr0087594 Aats-phe protein_coding FLAG-S2-jox2017_R1_peak_966 chr3R 25851595 25851876 + 10 NA intron (FBgn0026597, intron 3 of 11) protein_coding-intron (FBgn0026597, intron 3 of 12) -1348 FBgn0026597 FBgn0026597 FBtr0300600 Axn protein_coding FLAG-S2-jox2017_R1_peak_186 chr2L 19778863 19779142 + 10 NA intron (FBgn0032821, intron 6 of 7) protein_coding-intron (FBgn0032821, intron 5 of 6) 3502 FBgn0032822 FBgn0032822 FBtr0081291 CG10466 protein_coding FLAG-S2-jox2017_R1_peak_854 chr3R 14958710 14958849 + 10 NA exon (FBgn0038680, exon 2 of 4) protein_coding-exon (FBgn0038680, exon 2 of 4) 605 FBgn0038680 FBgn0038680 FBtr0083730 Cyp12a5 protein_coding FLAG-S2-jox2017_R1_peak_755 chr3R 5316951 5317168 + 10 NA intron (FBgn0037698, intron 1 of 9) protein_coding-intron (FBgn0037698, intron 1 of 11) 2340 FBgn0037698 FBgn0037698 FBtr0331351 CG16779 protein_coding FLAG-S2-jox2017_R1_peak_436 chr2R 20458496 20458667 + 10 NA promoter-TSS (FBgn0035027) protein_coding-promoter-TSS (FBgn0035027) 525 FBgn0035026 FBgn0035026 FBtr0072342 Fcp1 protein_coding FLAG-S2-jox2017_R1_peak_960 chr3R 25374551 25374700 + 10 NA Intergenic Intergenic -7484 FBgn0000492 FBgn0000492 FBtr0085441 Dr protein_coding FLAG-S2-jox2017_R1_peak_577 chr3L 12436455 12436594 + 10 NA Intergenic Intergenic -10756 FBgn0036285 FBgn0036285 FBtr0332087 toe protein_coding FLAG-S2-jox2017_R1_peak_996 chr3RHet 631576 631791 + 10 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_452 chr2RHet 3186234 3186451 + 10 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_1271 chrUextra 28776202 28776550 + 10 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_72 chr2L 7681243 7681512 + 10 NA exon (FBgn0040299, exon 3 of 10) protein_coding-exon (FBgn0040299, exon 3 of 10) -4291 FBgn0040299 FBgn0040299 FBtr0301767 Myo28B1 protein_coding FLAG-S2-jox2017_R1_peak_884 chr3R 17853722 17853962 + 10 NA promoter-TSS (FBgn0038925) protein_coding-promoter-TSS (FBgn0038925) 334 FBgn0019957 FBgn0019957 FBtr0084173 ND42 protein_coding FLAG-S2-jox2017_R1_peak_132 chr2L 15047668 15047867 + 10 NA exon (FBgn0000317, exon 7 of 12) protein_coding-exon (FBgn0000317, exon 7 of 12) 8271 FBgn0004837 FBgn0004837 FBtr0080700 Su(H) protein_coding FLAG-S2-jox2017_R1_peak_106 chr2L 12020343 12020688 + 10 NA exon (FBgn0032395, exon 1 of 4) protein_coding-exon (FBgn0032395, exon 1 of 4) 423 FBgn0032395 FBgn0032395 FBtr0080312 CG6734 protein_coding FLAG-S2-jox2017_R1_peak_507 chr3L 4910541 4910817 + 10 NA exon (FBgn0028699, exon 1 of 8) protein_coding-exon (FBgn0028699, exon 1 of 8) 311 FBgn0028699 FBgn0028699 FBtr0073354 Rh50 protein_coding FLAG-S2-jox2017_R1_peak_145 chr2L 16432287 16432516 + 10 NA intron (FBgn0028523, intron 1 of 3) protein_coding-intron (FBgn0028523, intron 1 of 3) -12879 FBgn0020416 FBgn0020416 FBtr0080860 Idgf1 protein_coding FLAG-S2-jox2017_R1_peak_25 chr2L 3513408 3513676 + 10 NA exon (FBgn0053123, exon 2 of 6) protein_coding-exon (FBgn0053123, exon 2 of 6) 1114 FBgn0053123 FBgn0053123 FBtr0077562 CG33123 protein_coding FLAG-S2-jox2017_R1_peak_639 chr3L 18867933 18868344 + 10 NA exon (FBgn0014075, exon 2 of 2) protein_coding-exon (FBgn0014075, exon 2 of 2) 2291 FBgn0014075 FBgn0014075 FBtr0075064 Ugt protein_coding FLAG-S2-jox2017_R1_peak_188 chr2L 19899822 19900052 + 10 NA intron (FBgn0263873, intron 1 of 13) protein_coding-intron (FBgn0263873, intron 4 of 15) -7387 FBgn0032827 FBgn0032827 FBtr0081312 CG10481 protein_coding FLAG-S2-jox2017_R1_peak_305 chr2R 7245642 7245896 + 10 NA promoter-TSS (FBgn0011987) tRNA-promoter-TSS (FBgn0011987) -614 FBgn0011987 FBgn0011987 FBtr0088156 tRNA:SeC tRNA FLAG-S2-jox2017_R1_peak_87 chr2L 10091715 10092202 + 10 NA exon (FBgn0032181, exon 1 of 1) protein_coding-exon (FBgn0032181, exon 1 of 1) 461 FBgn0032181 FBgn0032181 FBtr0079969 CG13133 protein_coding FLAG-S2-jox2017_R1_peak_687 chr3L 23659295 23659493 + 10 NA intron (FBgn0250816, intron 7 of 7) protein_coding-intron (FBgn0250816, intron 7 of 7) -48997 FBgn0039977 FBgn0039977 FBtr0333911 CG17454 protein_coding FLAG-S2-jox2017_R1_peak_763 chr3R 5987758 5988002 + 10 NA promoter-TSS (FBgn0037794) protein_coding-promoter-TSS (FBgn0037794) -830 FBgn0037794 FBgn0037794 FBtr0082184 CG6254 protein_coding FLAG-S2-jox2017_R1_peak_536 chr3L 8410481 8410782 + 10 NA exon (FBgn0052354, exon 2 of 4) protein_coding-exon (FBgn0052354, exon 2 of 4) 4519 FBgn0010431 FBgn0010431 FBtr0076613 mtrm protein_coding FLAG-S2-jox2017_R1_peak_750 chr3R 4855652 4855843 + 10 NA intron (FBgn0002932, intron 1 of 2) protein_coding-intron (FBgn0002932, intron 1 of 2) 7818 FBgn0063298 FBgn0063298 FBtr0309819 CR31429 ncRNA FLAG-S2-jox2017_R1_peak_1365 chrX 4776072 4776271 + 10 NA intron (FBgn0260971, intron 2 of 7) protein_coding-intron (FBgn0260971, intron 2 of 7) 6468 FBgn0029730 FBgn0029730 FBtr0070717 CG12681 protein_coding FLAG-S2-jox2017_R1_peak_550 chr3L 9630328 9630467 + 10 NA promoter-TSS (FBgn0036022) protein_coding-promoter-TSS (FBgn0036022) -815 FBgn0036022 FBgn0036022 FBtr0076387 CG8329 protein_coding FLAG-S2-jox2017_R1_peak_730 chr3R 3076560 3076699 + 10 NA exon (FBgn0037492, exon 2 of 2) protein_coding-exon (FBgn0037492, exon 2 of 2) 1050 FBgn0011282 FBgn0011282 FBtr0081597 Pbprp4 protein_coding FLAG-S2-jox2017_R1_peak_866 chr3R 16005657 16005925 + 10 NA Intergenic Intergenic 10633 FBgn0038774 FBgn0038774 FBtr0083866 CG5023 protein_coding FLAG-S2-jox2017_R1_peak_900 chr3R 19578100 19578239 + 10 NA promoter-TSS (FBgn0028684) protein_coding-promoter-TSS (FBgn0028684) 383 FBgn0039110 FBgn0039110 FBtr0084468 RanBP3 protein_coding FLAG-S2-jox2017_R1_peak_970 chr3R 26294431 26294614 + 10 NA intron (FBgn0039776, intron 1 of 8) protein_coding-intron (FBgn0039776, intron 1 of 8) 2750 FBgn0039776 FBgn0039776 FBtr0085650 PH4alphaEFB protein_coding FLAG-S2-jox2017_R1_peak_815 chr3R 11658035 11658276 + 10 NA TTS (FBgn0263023) protein_coding-TTS (FBgn0263023) 199 FBgn0003227 FBgn0003227 FBtr0083193 rec protein_coding FLAG-S2-jox2017_R1_peak_883 chr3R 17583287 17583503 + 10 NA TTS (FBgn0051198) protein_coding-TTS (FBgn0051198) -1101 FBgn0259237 FBgn0259237 FBtr0301691 CG42335 protein_coding FLAG-S2-jox2017_R1_peak_221 chr2R 1369632 1369865 + 10 NA intron (FBgn0050440, intron 6 of 7) protein_coding-intron (FBgn0050440, intron 6 of 7) 13593 FBgn0050440 FBgn0050440 FBtr0086076 CG30440 protein_coding FLAG-S2-jox2017_R1_peak_980 chr3R 27008008 27008147 + 10 NA exon (FBgn0051004, exon 11 of 16) protein_coding-exon (FBgn0051004, exon 11 of 16) -10869 FBgn0004389 FBgn0004389 FBtr0085754 bnk protein_coding FLAG-S2-jox2017_R1_peak_49 chr2L 5630936 5631136 + 10 NA intron (FBgn0051646, intron 12 of 12) protein_coding-intron (FBgn0051646, intron 12 of 12) -7276 FBgn0031726 FBgn0031726 FBtr0100853 Cyp6a16Psi pseudogene FLAG-S2-jox2017_R1_peak_140 chr2L 15864567 15864816 + 10 NA TTS (FBgn0261925) protein_coding-TTS (FBgn0261925) 738 FBgn0261925 FBgn0261925 FBtr0303589 CG42792 protein_coding FLAG-S2-jox2017_R1_peak_258 chr2R 4082332 4082567 + 10 NA intron (FBgn0053087, intron 2 of 22) protein_coding-intron (FBgn0053087, intron 2 of 22) 10762 FBgn0033275 FBgn0033275 FBtr0088804 CG14756 protein_coding FLAG-S2-jox2017_R1_peak_842 chr3R 14049578 14049830 + 10 NA promoter-TSS (FBgn0038584) protein_coding-promoter-TSS (FBgn0038584) 255 FBgn0038585 FBgn0038585 FBtr0083562 CG7993 protein_coding FLAG-S2-jox2017_R1_peak_107 chr2L 12066608 12066747 + 10 NA promoter-TSS (FBgn0032405) protein_coding-promoter-TSS (FBgn0032405) 95 FBgn0032405 FBgn0032405 FBtr0305265 CG14946 protein_coding FLAG-S2-jox2017_R1_peak_1369 chrX 5299164 5299468 + 10 NA TTS (FBgn0029762) protein_coding-TTS (FBgn0029762) 5562 FBgn0029762 FBgn0029762 FBtr0070797 NAAT1 protein_coding FLAG-S2-jox2017_R1_peak_825 chr3R 12429006 12429351 + 10 NA intron (FBgn0027562, intron 1 of 6) protein_coding-intron (FBgn0027562, intron 1 of 6) 1332 FBgn0027562 FBgn0027562 FBtr0083360 CG10345 protein_coding FLAG-S2-jox2017_R1_peak_802 chr3R 10441642 10441854 + 10 NA exon (FBgn0038246, exon 3 of 7) protein_coding-exon (FBgn0038246, exon 3 of 7) 6384 FBgn0038246 FBgn0038246 FBtr0082961 CG14853 protein_coding FLAG-S2-jox2017_R1_peak_897 chr3R 19328615 19328862 + 10 NA Intergenic Intergenic 4447 FBgn0085318 FBgn0085318 FBtr0290252 CG34289 protein_coding FLAG-S2-jox2017_R1_peak_377 chr2R 15358426 15358565 + 10 NA exon (FBgn0260934, exon 4 of 16) protein_coding-exon (FBgn0260934, exon 4 of 16) 14795 FBgn0002716 FBgn0002716 FBtr0086461 mei-W68 protein_coding FLAG-S2-jox2017_R1_peak_955 chr3R 24510247 24510386 + 10 NA intron (FBgn0039594, intron 1 of 10) protein_coding-intron (FBgn0039594, intron 1 of 9) 2253 FBgn0039594 FBgn0039594 FBtr0305087 CG9990 protein_coding FLAG-S2-jox2017_R1_peak_1027 chrU 3231407 3231632 + 10 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_62 chr2L 6617678 6617817 + 10 NA TTS (FBgn0031836) protein_coding-TTS (FBgn0031836) 3953 FBgn0031837 FBgn0031837 FBtr0113026 CG11320 protein_coding FLAG-S2-jox2017_R1_peak_905 chr3R 20008288 20008515 + 10 NA intron (FBgn0039161, intron 4 of 4) protein_coding-intron (FBgn0039161, intron 4 of 4) -3686 FBgn0029503 FBgn0029503 FBtr0084554 CHORD protein_coding FLAG-S2-jox2017_R1_peak_649 chr3L 19803856 19804167 + 10 NA TTS (FBgn0024889) protein_coding-TTS (FBgn0024889) 2428 FBgn0036910 FBgn0036910 FBtr0074925 Cyp305a1 protein_coding FLAG-S2-jox2017_R1_peak_978 chr3R 26719925 26720112 + 10 NA exon (FBgn0015032, exon 1 of 8) protein_coding-exon (FBgn0015032, exon 1 of 8) 335 FBgn0015032 FBgn0015032 FBtr0085712 Cyp4c3 protein_coding FLAG-S2-jox2017_R1_peak_765 chr3R 6146792 6146984 + 10 NA exon (FBgn0037808, exon 17 of 32) protein_coding-exon (FBgn0037808, exon 17 of 32) -9571 FBgn0037807 FBgn0037807 FBtr0082240 CG6293 protein_coding FLAG-S2-jox2017_R1_peak_1180 chrUextra 27452567 27452790 + 10 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_976 chr3R 26681941 26682154 + 10 NA Intergenic Intergenic 4010 FBgn0003720 FBgn0003720 FBtr0085709 tll protein_coding FLAG-S2-jox2017_R1_peak_1269 chrUextra 28768347 28768576 + 10 NA NA NA NA NA FLAG-S2-jox2017_R1_peak_817 chr3R 11671088 11671349 + 10 NA intron (FBgn0051150, intron 13 of 14) protein_coding-intron (FBgn0051150, intron 13 of 14) -1012 FBgn0038373 FBgn0038373 FBtr0083184 CG4546 protein_coding FLAG-S2-jox2017_R1_peak_597 chr3L 14548230 14548501 + 10 NA Intergenic Intergenic -4290 FBgn0036428 FBgn0036428 FBtr0075723 CG9238 protein_coding FLAG-S2-jox2017_R1_peak_58 chr2L 6352763 6352972 + 10 NA exon (FBgn0031802, exon 4 of 5) protein_coding-exon (FBgn0031802, exon 4 of 5) 1464 FBgn0031802 FBgn0031802 FBtr0079281 ppk7 protein_coding FLAG-S2-jox2017_R1_peak_1340 chrX 1324791 1325007 + 10 NA intron (FBgn0259108, intron 3 of 8) protein_coding-intron (FBgn0259108, intron 2 of 7) 21797 FBgn0259108 FBgn0259108 FBtr0112628 futsch protein_coding FLAG-S2-jox2017_R1_peak_400 chr2R 16955461 16955712 + 10 NA promoter-TSS (FBgn0022700) protein_coding-promoter-TSS (FBgn0022700) -994 FBgn0022700 FBgn0022700 FBtr0071543 Cht4 protein_coding FLAG-S2-jox2017_R1_peak_1378 chrX 6617658 6617949 + 10 NA exon (FBgn0029896, exon 3 of 4) protein_coding-exon (FBgn0029896, exon 3 of 4) 3455 FBgn0029896 FBgn0029896 FBtr0070986 CG3168 protein_coding FLAG-S2-jox2017_R1_peak_636 chr3L 18463374 18463513 + 10 NA promoter-TSS (FBgn0028415) protein_coding-promoter-TSS (FBgn0028415) -725 FBgn0028415 FBgn0028415 FBtr0075116 Met75Cb protein_coding FLAG-S2-jox2017_R1_peak_157 chr2L 17998237 17998453 + 10 NA Intergenic Intergenic 7927 FBgn0051742 FBgn0051742 FBtr0081025 CG31742 protein_coding FLAG-S2-jox2017_R1_peak_181 chr2L 19539016 19539225 + 10 NA exon (FBgn0032803, exon 1 of 1) protein_coding-exon (FBgn0032803, exon 1 of 1) 691 FBgn0032803 FBgn0032803 FBtr0081251 CG13082 protein_coding FLAG-S2-jox2017_R1_peak_17 chr2L 2838618 2838826 + 10 NA promoter-TSS (FBgn0031466) protein_coding-promoter-TSS (FBgn0031466) 308 FBgn0031467 FBgn0031467 FBtr0077618 Cpr23B protein_coding FLAG-S2-jox2017_R1_peak_1373 chrX 5600942 5601081 + 10 NA exon (FBgn0029791, exon 8 of 12) protein_coding-exon (FBgn0029791, exon 8 of 12) 6549 FBgn0053080 FBgn0053080 FBtr0070845 CG33080 protein_coding FLAG-S2-jox2017_R1_peak_793 chr3R 9951882 9952092 + 10 NA promoter-TSS (FBgn0010340) protein_coding-promoter-TSS (FBgn0010340) 472 FBgn0262955 FBgn0262955 FBtr0082892 RpII140 protein_coding FLAG-S2-jox2017_R1_peak_686 chr3L 23525740 23526034 + 10 NA Intergenic Intergenic -23138 FBgn0250816 FBgn0250816 FBtr0301725 AGO3 protein_coding FLAG-S2-jox2017_R1_peak_423 chr2R 19302258 19302465 + 10 NA exon (FBgn0034860, exon 3 of 6) protein_coding-exon (FBgn0034860, exon 3 of 6) -1107 FBgn0050411 FBgn0050411 FBtr0072016 CG30411 protein_coding FLAG-S2-jox2017_R1_peak_26 chr2L 3553853 3553992 + 10 NA Intergenic Intergenic 14187 FBgn0024244 FBgn0024244 FBtr0077531 drm protein_coding FLAG-S2-jox2017_R1_peak_193 chr2L 20652840 20653058 + 10 NA exon (FBgn0261787, exon 5 of 10) protein_coding-exon (FBgn0261787, exon 5 of 10) 2755 FBgn0032871 FBgn0032871 FBtr0081387 CG2611 protein_coding FLAG-S2-jox2017_R1_peak_381 chr2R 15756578 15756799 + 10 NA TTS (FBgn0043532) protein_coding-TTS (FBgn0043532) 4466 FBgn0043532 FBgn0043532 FBtr0086337 Obp56i protein_coding FLAG-S2-jox2017_R1_peak_1413 chrX 11924629 11925003 + 10 NA intron (FBgn0030367, intron 2 of 3) protein_coding-intron (FBgn0030367, intron 1 of 2) 682 FBgn0030367 FBgn0030367 FBtr0073640 Cyp311a1 protein_coding