PeakID (cmd=annotatePeaks.pl CTCF-S2-jox2017_R1_peaks.broadPeak dm3.fa -gid -gtf Drosophila_melanogaster.BDGP5.78.chr.gtf -cpu 6) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type CTCF-S2-jox2017_R1_peak_563 chr2R 16771914 16772386 + 1802 NA exon (FBgn0015524, exon 6 of 6) protein_coding-exon (FBgn0015524, exon 6 of 6) 4715 FBgn0034558 FBgn0034558 FBtr0304717 CG9236 protein_coding CTCF-S2-jox2017_R1_peak_672 chr3L 2409288 2409644 + 1598 NA TTS (FBgn0035338) protein_coding-TTS (FBgn0035338) -8489 FBgn0261551 FBgn0261551 FBtr0302675 CG42669 protein_coding CTCF-S2-jox2017_R1_peak_577 chr2R 17422949 17423292 + 1536 NA TTS (FBgn0050286) protein_coding-TTS (FBgn0050286) 1180 FBgn0050286 FBgn0050286 FBtr0300952 CG30286 protein_coding CTCF-S2-jox2017_R1_peak_1112 chr3R 3635839 3636294 + 1482 NA promoter-TSS (FBgn0051472) protein_coding-promoter-TSS (FBgn0051472) -188 FBgn0051472 FBgn0051472 FBtr0081747 CG31472 protein_coding CTCF-S2-jox2017_R1_peak_921 chr3L 16704715 16704999 + 1038 NA promoter-TSS (FBgn0063485) protein_coding-promoter-TSS (FBgn0063485) -80 FBgn0264605 FBgn0264605 FBtr0333628 CG43954 protein_coding CTCF-S2-jox2017_R1_peak_292 chr2L 20120527 20121259 + 982 NA Intergenic Intergenic 14030 FBgn0032853 FBgn0032853 FBtr0081378 CG10651 protein_coding CTCF-S2-jox2017_R1_peak_1249 chr3R 12795242 12796085 + 979 NA intron (FBgn0000015, intron 1 of 6) protein_coding-intron (FBgn0000015, intron 1 of 6) -5263 FBgn0038458 FBgn0038458 FBtr0083366 VhaM9.7-d protein_coding CTCF-S2-jox2017_R1_peak_605 chr2R 19539790 19540169 + 963 NA intron (FBgn0004795, intron 9 of 11) protein_coding-intron (FBgn0004795, intron 9 of 11) -5115 FBgn0034886 FBgn0034886 FBtr0072078 Pde8 protein_coding CTCF-S2-jox2017_R1_peak_1208 chr3R 10216957 10217353 + 910 NA TTS (FBgn0086901) protein_coding-TTS (FBgn0086901) 5010 FBgn0262327 FBgn0262327 FBtr0304502 mir-2281 pre_miRNA CTCF-S2-jox2017_R1_peak_489 chr2R 11226963 11227438 + 900 NA TTS (FBgn0034012) protein_coding-TTS (FBgn0034012) 8094 FBgn0034012 FBgn0034012 FBtr0114456 Hr51 protein_coding CTCF-S2-jox2017_R1_peak_1663 chrUextra 27346669 27347392 + 850 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1007 chr3L 21597410 21597760 + 850 NA intron (FBgn0261953, intron 1 of 7) protein_coding-intron (FBgn0261953, intron 1 of 7) 9888 FBgn0264568 FBgn0264568 FBtr0333469 CR43940 ncRNA CTCF-S2-jox2017_R1_peak_281 chr2L 19415167 19415490 + 847 NA promoter-TSS (FBgn0041789) protein_coding-promoter-TSS (FBgn0041789) -870 FBgn0041789 FBgn0041789 FBtr0081214 Pax protein_coding CTCF-S2-jox2017_R1_peak_544 chr2R 15356343 15356823 + 846 NA exon (FBgn0260934, exon 2 of 15) protein_coding-exon (FBgn0260934, exon 2 of 15) 12883 FBgn0002716 FBgn0002716 FBtr0086461 mei-W68 protein_coding CTCF-S2-jox2017_R1_peak_1062 chr3R 185279 185571 + 805 NA promoter-TSS (FBgn0037238) protein_coding-promoter-TSS (FBgn0037238) -180 FBgn0037238 FBgn0037238 FBtr0332450 CG1090 protein_coding CTCF-S2-jox2017_R1_peak_502 chr2R 12022981 12023356 + 801 NA intron (FBgn0086676, intron 4 of 7) protein_coding-intron (FBgn0086676, intron 3 of 7) -3013 FBgn0001124 FBgn0001124 FBtr0087232 Got1 protein_coding CTCF-S2-jox2017_R1_peak_265 chr2L 18665933 18666264 + 791 NA TTS (FBgn0263079) protein_coding-TTS (FBgn0263079) 866 FBgn0086200 FBgn0086200 FBtr0306300 CG42490 protein_coding CTCF-S2-jox2017_R1_peak_832 chr3L 11041001 11041369 + 763 NA intron (FBgn0263776, intron 1 of 6) protein_coding-intron (FBgn0263776, intron 1 of 5) 3286 FBgn0263776 FBgn0263776 FBtr0310568 CG43693 protein_coding CTCF-S2-jox2017_R1_peak_899 chr3L 15171782 15172083 + 739 NA Intergenic Intergenic -15204 FBgn0036489 FBgn0036489 FBtr0075645 CG7011 protein_coding CTCF-S2-jox2017_R1_peak_1419 chr3R 24811756 24812070 + 735 NA Intergenic Intergenic -15837 FBgn0039617 FBgn0039617 FBtr0085347 CG14521 protein_coding CTCF-S2-jox2017_R1_peak_1992 chrX 17425806 17426618 + 735 NA promoter-TSS (FBgn0263706) protein_coding-promoter-TSS (FBgn0263706) 37049 FBgn0030844 FBgn0030844 FBtr0100574 ppk23 protein_coding CTCF-S2-jox2017_R1_peak_1417 chr3R 24497935 24498340 + 730 NA TTS (FBgn0039593) protein_coding-TTS (FBgn0039593) 1679 FBgn0039593 FBgn0039593 FBtr0085307 CG9989 protein_coding CTCF-S2-jox2017_R1_peak_1448 chr3R 26887075 26887456 + 726 NA promoter-TSS (FBgn0002413) protein_coding-promoter-TSS (FBgn0002413) -662 FBgn0002413 FBgn0002413 FBtr0085744 dco protein_coding CTCF-S2-jox2017_R1_peak_679 chr3L 2851811 2852201 + 724 NA intron (FBgn0263392, intron 3 of 9) protein_coding-intron (FBgn0263392, intron 3 of 9) 27152 FBgn0263392 FBgn0263392 FBtr0309119 CG43444 protein_coding CTCF-S2-jox2017_R1_peak_1148 chr3R 5926229 5926633 + 716 NA promoter-TSS (FBgn0262459) pre_miRNA-promoter-TSS (FBgn0262459) -243 FBgn0262459 FBgn0262459 FBtr0304500 mir-34 pre_miRNA CTCF-S2-jox2017_R1_peak_31 chr2L 2130126 2130473 + 710 NA promoter-TSS (FBgn0004507) protein_coding-promoter-TSS (FBgn0004507) -516 FBgn0004507 FBgn0004507 FBtr0100485 GlyP protein_coding CTCF-S2-jox2017_R1_peak_651 chr3L 505756 506428 + 705 NA intron (FBgn0001316, intron 3 of 18) protein_coding-intron (FBgn0001316, intron 4 of 18) 5127 FBgn0085297 FBgn0085297 FBtr0112463 CG34268 protein_coding CTCF-S2-jox2017_R1_peak_781 chr3L 8741952 8742294 + 702 NA TTS (FBgn0040828) protein_coding-TTS (FBgn0040828) 703 FBgn0040828 FBgn0040828 FBtr0076592 CG13306 protein_coding CTCF-S2-jox2017_R1_peak_141 chr2L 9576670 9577029 + 698 NA promoter-TSS (FBgn0028479) protein_coding-promoter-TSS (FBgn0028479) -95 FBgn0028479 FBgn0028479 FBtr0079859 Mtpalpha protein_coding CTCF-S2-jox2017_R1_peak_369 chr2R 4510732 4511049 + 677 NA exon (FBgn0033313, exon 10 of 10) protein_coding-exon (FBgn0033313, exon 10 of 10) -2066 FBgn0022027 FBgn0022027 FBtr0088694 Vps25 protein_coding CTCF-S2-jox2017_R1_peak_1270 chr3R 13846892 13847395 + 676 NA promoter-TSS (FBgn0038564) protein_coding-promoter-TSS (FBgn0038564) -179 FBgn0038564 FBgn0038564 FBtr0083539 CG7785 protein_coding CTCF-S2-jox2017_R1_peak_43 chr2L 3472252 3472651 + 669 NA promoter-TSS (FBgn0051956) protein_coding-promoter-TSS (FBgn0051956) -152 FBgn0051956 FBgn0051956 FBtr0114524 pgant4 protein_coding CTCF-S2-jox2017_R1_peak_1248 chr3R 12783464 12783806 + 668 NA intron (FBgn0000015, intron 1 of 6) protein_coding-intron (FBgn0000015, intron 1 of 6) -17291 FBgn0038458 FBgn0038458 FBtr0083366 VhaM9.7-d protein_coding CTCF-S2-jox2017_R1_peak_876 chr3L 14104542 14104937 + 666 NA TTS (FBgn0042630) protein_coding-TTS (FBgn0042630) -3521 FBgn0036411 FBgn0036411 FBtr0330178 Sox21a protein_coding CTCF-S2-jox2017_R1_peak_1491 chr4 445231 445621 + 654 NA Intergenic Intergenic -1267 FBgn0263385 FBgn0263385 FBtr0309072 CR43437 ncRNA CTCF-S2-jox2017_R1_peak_197 chr2L 12540155 12540606 + 649 NA exon (FBgn0259176, exon 1 of 5) protein_coding-exon (FBgn0259176, exon 1 of 5) -2796 FBgn0261709 FBgn0261709 FBtr0303215 CR42746 ncRNA CTCF-S2-jox2017_R1_peak_142 chr2L 9612741 9613309 + 646 NA promoter-TSS (FBgn0040070) protein_coding-promoter-TSS (FBgn0040070) -354 FBgn0040070 FBgn0040070 FBtr0079840 Trx-2 protein_coding CTCF-S2-jox2017_R1_peak_1074 chr3R 952572 952941 + 644 NA Intergenic Intergenic -1054 FBgn0037293 FBgn0037293 FBtr0078842 CG12007 protein_coding CTCF-S2-jox2017_R1_peak_336 chr2R 2038491 2039051 + 640 NA intron (FBgn0000546, intron 4 of 7) protein_coding-intron (FBgn0000546, intron 3 of 6) 1410 FBgn0011938 FBgn0011938 FBtr0086016 tRNA:N5:42Ah tRNA CTCF-S2-jox2017_R1_peak_778 chr3L 8644901 8645303 + 639 NA TTS (FBgn0035922) protein_coding-TTS (FBgn0035922) 2531 FBgn0035922 FBgn0035922 FBtr0273328 Pex7 protein_coding CTCF-S2-jox2017_R1_peak_461 chr2R 9829544 9829928 + 630 NA promoter-TSS (FBgn0013733) protein_coding-promoter-TSS (FBgn0013733) 1146 FBgn0033885 FBgn0033885 FBtr0087615 DJ-1alpha protein_coding CTCF-S2-jox2017_R1_peak_1073 chr3R 796387 796921 + 619 NA Intergenic Intergenic 5487 FBgn0037290 FBgn0037290 FBtr0078841 CG1124 protein_coding CTCF-S2-jox2017_R1_peak_510 chr2R 12687535 12687898 + 612 NA Intergenic Intergenic -3804 FBgn0034159 FBgn0034159 FBtr0300552 CG15615 protein_coding CTCF-S2-jox2017_R1_peak_244 chr2L 16815986 16816271 + 611 NA promoter-TSS (FBgn0004797) protein_coding-promoter-TSS (FBgn0004797) -980 FBgn0004797 FBgn0004797 FBtr0080918 mdy protein_coding CTCF-S2-jox2017_R1_peak_1078 chr3R 1124691 1125113 + 609 NA promoter-TSS (FBgn0037310) protein_coding-promoter-TSS (FBgn0037310) -965 FBgn0037310 FBgn0037310 FBtr0078784 Tim17b1 protein_coding CTCF-S2-jox2017_R1_peak_1881 chrX 9046174 9046537 + 602 NA TTS (FBgn0030093) protein_coding-TTS (FBgn0030093) 3013 FBgn0030093 FBgn0030093 FBtr0071300 dalao protein_coding CTCF-S2-jox2017_R1_peak_1546 chrUextra 2684423 2684930 + 599 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1768 chrX 423826 424148 + 596 NA promoter-TSS (FBgn0024983) protein_coding-promoter-TSS (FBgn0024983) -105 FBgn0024983 FBgn0024983 FBtr0334033 CG4293 protein_coding CTCF-S2-jox2017_R1_peak_1008 chr3L 21645876 21646267 + 587 NA intron (FBgn0264711, intron 2 of 7) protein_coding-intron (FBgn0264711, intron 2 of 7) -5251 FBgn0264711 FBgn0264711 FBtr0333974 CG43980 protein_coding CTCF-S2-jox2017_R1_peak_175 chr2L 11816381 11816711 + 581 NA exon (FBgn0259225, exon 10 of 10) protein_coding-exon (FBgn0259225, exon 10 of 10) -2766 FBgn0032378 FBgn0032378 FBtr0080259 CycY protein_coding CTCF-S2-jox2017_R1_peak_1563 chrUextra 7039304 7039802 + 580 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_254 chr2L 17784641 17784997 + 579 NA Intergenic Intergenic -7593 FBgn0263338 FBgn0263338 FBtr0308768 CR43419 ncRNA CTCF-S2-jox2017_R1_peak_2010 chrX 18411347 18411849 + 576 NA exon (FBgn0027087, exon 2 of 6) protein_coding-exon (FBgn0027087, exon 2 of 6) 2137 FBgn0027087 FBgn0027087 FBtr0333806 Aats-his protein_coding CTCF-S2-jox2017_R1_peak_296 chr2L 20414804 20415192 + 569 NA TTS (FBgn0032858) protein_coding-TTS (FBgn0032858) 1920 FBgn0032858 FBgn0032858 FBtr0081367 CG10949 protein_coding CTCF-S2-jox2017_R1_peak_2038 chrX 20500409 20500706 + 569 NA Intergenic Intergenic -5757 FBgn0083981 FBgn0083981 FBtr0331160 RunxA protein_coding CTCF-S2-jox2017_R1_peak_692 chr3L 3616178 3616841 + 560 NA exon (FBgn0035453, exon 4 of 4) protein_coding-exon (FBgn0035453, exon 4 of 4) 1127 FBgn0035453 FBgn0035453 FBtr0300062 CG10357 protein_coding CTCF-S2-jox2017_R1_peak_1553 chrUextra 3809267 3809834 + 559 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_597 chr2R 19001995 19002270 + 558 NA Intergenic Intergenic -9440 FBgn0041236 FBgn0041236 FBtr0071976 Gr59d protein_coding CTCF-S2-jox2017_R1_peak_36 chr2L 2855939 2856218 + 558 NA promoter-TSS (FBgn0015521) protein_coding-promoter-TSS (FBgn0015521) 8 FBgn0015521 FBgn0015521 FBtr0273293 RpS21 protein_coding CTCF-S2-jox2017_R1_peak_1810 chrX 3374918 3375294 + 558 NA exon (FBgn0029663, exon 2 of 7) protein_coding-exon (FBgn0029663, exon 2 of 7) 1249 FBgn0029663 FBgn0029663 FBtr0114487 CG10804 protein_coding CTCF-S2-jox2017_R1_peak_426 chr2R 7515566 7515873 + 554 NA intron (FBgn0033638, intron 2 of 7) protein_coding-intron (FBgn0033638, intron 2 of 7) -9191 FBgn0086712 FBgn0086712 FBtr0088090 Egm protein_coding CTCF-S2-jox2017_R1_peak_114 chr2L 7856397 7856683 + 535 NA promoter-TSS (FBgn0040099) protein_coding-promoter-TSS (FBgn0040099) -537 FBgn0040099 FBgn0040099 FBtr0308065 lectin-28C protein_coding CTCF-S2-jox2017_R1_peak_1576 chrUextra 9036992 9037521 + 531 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1489 chr4 427466 427818 + 520 NA Intergenic Intergenic -11214 FBgn0262636 FBgn0262636 FBtr0307044 Lin29 protein_coding CTCF-S2-jox2017_R1_peak_742 chr3L 6117901 6118316 + 515 NA intron (FBgn0002440, intron 4 of 5) protein_coding-intron (FBgn0002440, intron 4 of 5) 3799 FBgn0002440 FBgn0002440 FBtr0077062 l(3)mbn protein_coding CTCF-S2-jox2017_R1_peak_109 chr2L 7534998 7535552 + 513 NA intron (FBgn0085403, intron 2 of 4) protein_coding-intron (FBgn0085403, intron 3 of 5) -20015 FBgn0085403 FBgn0085403 FBtr0112606 Rapgap1 protein_coding CTCF-S2-jox2017_R1_peak_1097 chr3R 2585247 2585582 + 513 NA promoter-TSS (FBgn0000166) protein_coding-promoter-TSS (FBgn0000166) -215 FBgn0000166 FBgn0000166 FBtr0081668 bcd protein_coding CTCF-S2-jox2017_R1_peak_765 chr3L 7553727 7554019 + 512 NA promoter-TSS (FBgn0035797) protein_coding-promoter-TSS (FBgn0035797) -736 FBgn0035797 FBgn0035797 FBtr0290223 CG14837 protein_coding CTCF-S2-jox2017_R1_peak_1433 chr3R 25848271 25848577 + 496 NA promoter-TSS (FBgn0026597) protein_coding-promoter-TSS (FBgn0026597) -104 FBgn0039739 FBgn0039739 FBtr0085601 RpS28a protein_coding CTCF-S2-jox2017_R1_peak_506 chr2R 12471380 12471678 + 489 NA intron (FBgn0016131, intron 3 of 6) protein_coding-intron (FBgn0016131, intron 3 of 6) -2070 FBgn0003274 FBgn0003274 FBtr0087105 RpLP2 protein_coding CTCF-S2-jox2017_R1_peak_834 chr3L 11116197 11116485 + 485 NA promoter-TSS (FBgn0036136) protein_coding-promoter-TSS (FBgn0036136) -25 FBgn0036136 FBgn0036136 FBtr0076223 Ufd1-like protein_coding CTCF-S2-jox2017_R1_peak_551 chr2R 15884970 15885375 + 481 NA Intergenic Intergenic 2701 FBgn0050212 FBgn0050212 FBtr0086326 tRNA:CR30212 tRNA CTCF-S2-jox2017_R1_peak_387 chr2R 5830326 5830661 + 467 NA exon (FBgn0011656, exon 1 of 11) protein_coding-exon (FBgn0011656, exon 1 of 11) 15857 FBgn0011656 FBgn0011656 FBtr0088446 Mef2 protein_coding CTCF-S2-jox2017_R1_peak_1893 chrX 9672480 9672859 + 467 NA promoter-TSS (FBgn0030151) protein_coding-promoter-TSS (FBgn0030151) -1551 FBgn0030151 FBgn0030151 FBtr0089386 CG1354 protein_coding CTCF-S2-jox2017_R1_peak_1107 chr3R 3172158 3172529 + 466 NA promoter-TSS (FBgn0051501) protein_coding-promoter-TSS (FBgn0051501) -212 FBgn0051501 FBgn0051501 FBtr0081583 nxf4 protein_coding CTCF-S2-jox2017_R1_peak_224 chr2L 14705949 14706589 + 464 NA Intergenic Intergenic -6396 FBgn0028855 FBgn0028855 FBtr0302946 CG15282 protein_coding CTCF-S2-jox2017_R1_peak_898 chr3L 15154719 15155010 + 452 NA promoter-TSS (FBgn0036488) protein_coding-promoter-TSS (FBgn0036488) -53 FBgn0036488 FBgn0036488 FBtr0075643 CG6878 protein_coding CTCF-S2-jox2017_R1_peak_1253 chr3R 13228203 13228502 + 451 NA promoter-TSS (FBgn0038504) protein_coding-promoter-TSS (FBgn0038504) 658 FBgn0085308 FBgn0085308 FBtr0333932 CG34279 protein_coding CTCF-S2-jox2017_R1_peak_826 chr3L 10892225 10892691 + 451 NA promoter-TSS (FBgn0036111) protein_coding-promoter-TSS (FBgn0036111) -235 FBgn0036111 FBgn0036111 FBtr0076251 Aps protein_coding CTCF-S2-jox2017_R1_peak_1817 chrX 3673681 3673989 + 448 NA promoter-TSS (FBgn0086899) protein_coding-promoter-TSS (FBgn0086899) 2346 FBgn0263532 FBgn0263532 FBtr0309622 mir-4962 pre_miRNA CTCF-S2-jox2017_R1_peak_655 chr3L 712054 712396 + 446 NA promoter-TSS (FBgn0035159) protein_coding-promoter-TSS (FBgn0035159) -375 FBgn0035159 FBgn0035159 FBtr0072602 CG13896 protein_coding CTCF-S2-jox2017_R1_peak_361 chr2R 4139034 4139423 + 445 NA Intergenic Intergenic -2533 FBgn0033277 FBgn0033277 FBtr0088794 CG14760 protein_coding CTCF-S2-jox2017_R1_peak_1243 chr3R 12694922 12695260 + 439 NA intron (FBgn0263610, intron 4 of 7) ncRNA-intron (FBgn0263610, intron 3 of 6) 13054 FBgn0262462 FBgn0262462 FBtr0304522 mir-iab-4 pre_miRNA CTCF-S2-jox2017_R1_peak_770 chr3L 7830193 7830502 + 430 NA intron (FBgn0016694, intron 1 of 5) protein_coding-intron (FBgn0016694, intron 1 of 4) -27422 FBgn0052369 FBgn0052369 FBtr0076783 CG32369 protein_coding CTCF-S2-jox2017_R1_peak_379 chr2R 5195839 5196479 + 428 NA promoter-TSS (FBgn0033402) protein_coding-promoter-TSS (FBgn0033402) 68 FBgn0033402 FBgn0033402 FBtr0088598 Myd88 protein_coding CTCF-S2-jox2017_R1_peak_66 chr2L 4660957 4661267 + 419 NA Intergenic Intergenic 9709 FBgn0031619 FBgn0031619 FBtr0077376 CG3355 protein_coding CTCF-S2-jox2017_R1_peak_1851 chrX 6003927 6004275 + 419 NA intron (FBgn0264386, intron 24 of 25) protein_coding-intron (FBgn0264386, intron 24 of 25) 16199 FBgn0029843 FBgn0029843 FBtr0070873 Nep1 protein_coding CTCF-S2-jox2017_R1_peak_90 chr2L 6455971 6456325 + 419 NA promoter-TSS (FBgn0031815) protein_coding-promoter-TSS (FBgn0031815) 113 FBgn0031815 FBgn0031815 FBtr0079258 frj protein_coding CTCF-S2-jox2017_R1_peak_81 chr2L 5771230 5771511 + 413 NA exon (FBgn0051912, exon 2 of 2) ncRNA-exon (FBgn0051912, exon 2 of 2) 1618 FBgn0051912 FBgn0051912 FBtr0332036 CR31912 ncRNA CTCF-S2-jox2017_R1_peak_111 chr2L 7641641 7641930 + 412 NA TTS (FBgn0264087) protein_coding-TTS (FBgn0264087) 32898 FBgn0264087 FBgn0264087 FBtr0330703 Slob protein_coding CTCF-S2-jox2017_R1_peak_1318 chr3R 17010509 17010778 + 407 NA intron (FBgn0264357, intron 1 of 8) protein_coding-intron (FBgn0264357, intron 6 of 12) -16716 FBgn0260004 FBgn0260004 FBtr0084027 Snmp1 protein_coding CTCF-S2-jox2017_R1_peak_420 chr2R 7298289 7298651 + 404 NA promoter-TSS (FBgn0054054) protein_coding-promoter-TSS (FBgn0054054) -527 FBgn0054054 FBgn0054054 FBtr0100109 CG34054 protein_coding CTCF-S2-jox2017_R1_peak_1492 chr4 507166 507562 + 403 NA promoter-TSS (FBgn0039908) protein_coding-promoter-TSS (FBgn0039908) -2935 FBgn0039908 FBgn0039908 FBtr0332904 Asator protein_coding CTCF-S2-jox2017_R1_peak_415 chr2R 7021637 7022233 + 400 NA Intergenic Intergenic -1498 FBgn0033578 FBgn0033578 FBtr0088202 BBS4 protein_coding CTCF-S2-jox2017_R1_peak_977 chr3L 20090391 20090698 + 400 NA TTS (FBgn0036935) protein_coding-TTS (FBgn0036935) 6383 FBgn0036935 FBgn0036935 FBtr0074870 CG14186 protein_coding CTCF-S2-jox2017_R1_peak_2045 chrX 20931616 20932041 + 400 NA exon (FBgn0031150, exon 2 of 7) protein_coding-exon (FBgn0031150, exon 2 of 7) 3787 FBgn0052512 FBgn0052512 FBtr0332847 CG32512 protein_coding CTCF-S2-jox2017_R1_peak_505 chr2R 12439372 12439656 + 398 NA promoter-TSS (FBgn0034135) protein_coding-promoter-TSS (FBgn0034135) -251 FBgn0034135 FBgn0034135 FBtr0087097 Syn2 protein_coding CTCF-S2-jox2017_R1_peak_271 chr2L 18839580 18839920 + 397 NA promoter-TSS (FBgn0032717) protein_coding-promoter-TSS (FBgn0032717) -71 FBgn0032717 FBgn0032717 FBtr0081120 CG10600 protein_coding CTCF-S2-jox2017_R1_peak_657 chr3L 774647 775094 + 395 NA Intergenic Intergenic 4507 FBgn0052481 FBgn0052481 FBtr0072580 tRNA:CR32481 tRNA CTCF-S2-jox2017_R1_peak_1942 chrX 13457468 13457878 + 390 NA promoter-TSS (FBgn0086674) protein_coding-promoter-TSS (FBgn0086674) -183 FBgn0086674 FBgn0086674 FBtr0330399 Tango13 protein_coding CTCF-S2-jox2017_R1_peak_937 chr3L 17590087 17590343 + 390 NA intron (FBgn0000567, intron 5 of 7) protein_coding-intron (FBgn0000567, intron 5 of 7) 22210 FBgn0000567 FBgn0000567 FBtr0075204 Eip74EF protein_coding CTCF-S2-jox2017_R1_peak_1179 chr3R 7438869 7439430 + 389 NA intron (FBgn0051363, intron 1 of 4) protein_coding-intron (FBgn0051363, intron 1 of 3) -6665 FBgn0037920 FBgn0037920 FBtr0299566 CG14710 protein_coding CTCF-S2-jox2017_R1_peak_1284 chr3R 15316736 15317078 + 389 NA promoter-TSS (FBgn0038709) protein_coding-promoter-TSS (FBgn0038709) -70 FBgn0038709 FBgn0038709 FBtr0083768 CG15025 protein_coding CTCF-S2-jox2017_R1_peak_1364 chr3R 20382655 20382950 + 388 NA promoter-TSS (FBgn0004190) snRNA-promoter-TSS (FBgn0004190) -135 FBgn0004190 FBgn0004190 FBtr0084652 snRNA:U6:96Ac snRNA CTCF-S2-jox2017_R1_peak_1605 chrUextra 17025985 17026318 + 386 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_16 chr2L 740117 740411 + 385 NA intron (FBgn0026438, intron 4 of 7) protein_coding-intron (FBgn0026438, intron 4 of 7) 4131 FBgn0026438 FBgn0026438 FBtr0301316 Eaat2 protein_coding CTCF-S2-jox2017_R1_peak_1571 chrUextra 8133327 8133843 + 374 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1245 chr3R 12744799 12745160 + 368 NA intron (FBgn0263610, intron 1 of 7) ncRNA-intron (FBgn0263610, intron 1 of 7) 3976 FBgn0263610 FBgn0263610 FBtr0306339 msa ncRNA CTCF-S2-jox2017_R1_peak_1825 chrX 4423935 4424214 + 367 NA promoter-TSS (FBgn0029708) protein_coding-promoter-TSS (FBgn0029708) -190 FBgn0029708 FBgn0029708 FBtr0070674 CG3556 protein_coding CTCF-S2-jox2017_R1_peak_1185 chr3R 8176247 8176536 + 365 NA promoter-TSS (FBgn0038013) protein_coding-promoter-TSS (FBgn0038013) -60 FBgn0038013 FBgn0038013 FBtr0082615 CG10038 protein_coding CTCF-S2-jox2017_R1_peak_996 chr3L 20704500 20704941 + 359 NA Intergenic Intergenic -2480 FBgn0085289 FBgn0085289 FBtr0333482 CG34260 protein_coding CTCF-S2-jox2017_R1_peak_1438 chr3R 26250849 26251129 + 358 NA promoter-TSS (FBgn0039766) protein_coding-promoter-TSS (FBgn0039766) -105 FBgn0039766 FBgn0039766 FBtr0085628 CG15536 protein_coding CTCF-S2-jox2017_R1_peak_92 chr2L 6557353 6557647 + 355 NA promoter-TSS (FBgn0031830) protein_coding-promoter-TSS (FBgn0031830) -141 FBgn0031829 FBgn0031829 FBtr0079333 osm-6 protein_coding CTCF-S2-jox2017_R1_peak_928 chr3L 16948297 16948653 + 352 NA promoter-TSS (FBgn0010352) protein_coding-promoter-TSS (FBgn0010352) 440 FBgn0010352 FBgn0010352 FBtr0075269 Nc73EF protein_coding CTCF-S2-jox2017_R1_peak_435 chr2R 8088310 8088885 + 351 NA promoter-TSS (FBgn0033699) protein_coding-promoter-TSS (FBgn0033699) -264 FBgn0033699 FBgn0033699 FBtr0088007 RpS11 protein_coding CTCF-S2-jox2017_R1_peak_1352 chr3R 19505576 19505898 + 345 NA promoter-TSS (FBgn0040227) protein_coding-promoter-TSS (FBgn0040227) -30 FBgn0040227 FBgn0040227 FBtr0089622 eIF-3p66 protein_coding CTCF-S2-jox2017_R1_peak_1234 chr3R 12323094 12323431 + 345 NA TTS (FBgn0038440) protein_coding-TTS (FBgn0038440) 1419 FBgn0038440 FBgn0038440 FBtr0089695 Gr89a protein_coding CTCF-S2-jox2017_R1_peak_1988 chrX 16971633 16972145 + 345 NA promoter-TSS (FBgn0030813) protein_coding-promoter-TSS (FBgn0030813) 41 FBgn0030812 FBgn0030812 FBtr0310525 CG8949 protein_coding CTCF-S2-jox2017_R1_peak_1326 chr3R 17345916 17346323 + 343 NA promoter-TSS (FBgn0038890) protein_coding-promoter-TSS (FBgn0038890) -548 FBgn0038890 FBgn0038890 FBtr0301212 CG7956 protein_coding CTCF-S2-jox2017_R1_peak_215 chr2L 14094621 14094964 + 340 NA TTS (FBgn0028875) protein_coding-TTS (FBgn0028875) -9691 FBgn0028904 FBgn0028904 FBtr0080596 CG16879 protein_coding CTCF-S2-jox2017_R1_peak_97 chr2L 6797455 6797853 + 340 NA promoter-TSS (FBgn0015777) protein_coding-promoter-TSS (FBgn0015777) 540 FBgn0015777 FBgn0015777 FBtr0100381 nrv2 protein_coding CTCF-S2-jox2017_R1_peak_1311 chr3R 16773702 16774084 + 339 NA promoter-TSS (FBgn0002921) protein_coding-promoter-TSS (FBgn0002921) -543 FBgn0002921 FBgn0002921 FBtr0089516 Atpalpha protein_coding CTCF-S2-jox2017_R1_peak_1784 chrX 1666691 1666998 + 337 NA promoter-TSS (FBgn0026086) protein_coding-promoter-TSS (FBgn0026086) -908 FBgn0026086 FBgn0026086 FBtr0309961 Adar protein_coding CTCF-S2-jox2017_R1_peak_154 chr2L 9887830 9888187 + 336 NA promoter-TSS (FBgn0029174) protein_coding-promoter-TSS (FBgn0029174) -90 FBgn0029174 FBgn0029174 FBtr0079872 FKBP59 protein_coding CTCF-S2-jox2017_R1_peak_1950 chrX 14606494 14606820 + 336 NA intron (FBgn0015774, intron 2 of 7) protein_coding-intron (FBgn0015774, intron 3 of 8) 6318 FBgn0052595 FBgn0052595 FBtr0073941 CG32595 protein_coding CTCF-S2-jox2017_R1_peak_48 chr2L 3657282 3657742 + 333 NA promoter-TSS (FBgn0000721) protein_coding-promoter-TSS (FBgn0000721) -5233 FBgn0085369 FBgn0085369 FBtr0302391 CG34340 protein_coding CTCF-S2-jox2017_R1_peak_473 chr2R 10334352 10334699 + 332 NA intron (FBgn0261613, intron 2 of 5) protein_coding-intron (FBgn0261613, intron 2 of 5) 11121 FBgn0261613 FBgn0261613 FBtr0302926 Oaz protein_coding CTCF-S2-jox2017_R1_peak_1204 chr3R 9914537 9914885 + 331 NA promoter-TSS (FBgn0038198) protein_coding-promoter-TSS (FBgn0038198) -1785 FBgn0038198 FBgn0038198 FBtr0082889 Npc2b protein_coding CTCF-S2-jox2017_R1_peak_1205 chr3R 9924278 9924675 + 328 NA promoter-TSS (FBgn0038200) protein_coding-promoter-TSS (FBgn0038200) -674 FBgn0038200 FBgn0038200 FBtr0082917 CG9920 protein_coding CTCF-S2-jox2017_R1_peak_104 chr2L 7258132 7258412 + 325 NA TTS (FBgn0051909) protein_coding-TTS (FBgn0051909) 760 FBgn0051909 FBgn0051909 FBtr0300459 CG31909 protein_coding CTCF-S2-jox2017_R1_peak_1842 chrX 5418566 5418878 + 324 NA promoter-TSS (FBgn0086667) snoRNA-promoter-TSS (FBgn0086667) -224 FBgn0086667 FBgn0086667 FBtr0091788 snoRNA:Psi28S-3342 snoRNA CTCF-S2-jox2017_R1_peak_1616 chrUextra 19603810 19604137 + 323 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1227 chr3R 12031102 12031512 + 321 NA promoter-TSS (FBgn0010438) protein_coding-promoter-TSS (FBgn0010438) -334 FBgn0010438 FBgn0010438 FBtr0083277 mtSSB protein_coding CTCF-S2-jox2017_R1_peak_1319 chr3R 17049209 17049511 + 319 NA promoter-TSS (FBgn0038872) protein_coding-promoter-TSS (FBgn0038872) -54 FBgn0038871 FBgn0038871 FBtr0084107 CG3337 protein_coding CTCF-S2-jox2017_R1_peak_647 chr3L 246837 247173 + 318 NA promoter-TSS (FBgn0052476) protein_coding-promoter-TSS (FBgn0052476) -93 FBgn0000541 FBgn0000541 FBtr0301349 E(bx) protein_coding CTCF-S2-jox2017_R1_peak_1871 chrX 7604827 7605170 + 318 NA Intergenic Intergenic 3190 FBgn0262979 FBgn0262979 FBtr0306815 CG43287 protein_coding CTCF-S2-jox2017_R1_peak_355 chr2R 3901744 3902046 + 315 NA promoter-TSS (FBgn0033250) protein_coding-promoter-TSS (FBgn0033250) -636 FBgn0033250 FBgn0033250 FBtr0304750 CG14762 protein_coding CTCF-S2-jox2017_R1_peak_674 chr3L 2531109 2531656 + 315 NA intron (FBgn0010905, intron 3 of 16) protein_coding-intron (FBgn0010905, intron 3 of 15) -4409 FBgn0260480 FBgn0260480 FBtr0072962 CG32295 protein_coding CTCF-S2-jox2017_R1_peak_1869 chrX 7572916 7573216 + 313 NA TTS (FBgn0004198) protein_coding-TTS (FBgn0004198) 15885 FBgn0029504 FBgn0029504 FBtr0071079 CHES-1-like protein_coding CTCF-S2-jox2017_R1_peak_718 chr3L 4805820 4806152 + 313 NA promoter-TSS (FBgn0035575) protein_coding-promoter-TSS (FBgn0035575) -712 FBgn0035575 FBgn0035575 FBtr0073362 CG7509 protein_coding CTCF-S2-jox2017_R1_peak_1286 chr3R 15474375 15474647 + 312 NA promoter-TSS (FBgn0038723) protein_coding-promoter-TSS (FBgn0038723) -287 FBgn0038723 FBgn0038723 FBtr0083803 CG6195 protein_coding CTCF-S2-jox2017_R1_peak_1422 chr3R 25077253 25077590 + 309 NA TTS (FBgn0003525) protein_coding-TTS (FBgn0003525) -2877 FBgn0263236 FBgn0263236 FBtr0085400 SP1029 protein_coding CTCF-S2-jox2017_R1_peak_1353 chr3R 19547688 19548058 + 309 NA Intergenic Intergenic -1213 FBgn0039109 FBgn0039109 FBtr0084448 CG10365 protein_coding CTCF-S2-jox2017_R1_peak_287 chr2L 19887514 19887997 + 309 NA intron (FBgn0263873, intron 3 of 15) protein_coding-intron (FBgn0263873, intron 4 of 15) 4795 FBgn0032827 FBgn0032827 FBtr0081312 CG10481 protein_coding CTCF-S2-jox2017_R1_peak_474 chr2R 10335335 10335596 + 308 NA intron (FBgn0261613, intron 2 of 5) protein_coding-intron (FBgn0261613, intron 2 of 5) 12061 FBgn0261613 FBgn0261613 FBtr0302926 Oaz protein_coding CTCF-S2-jox2017_R1_peak_594 chr2R 18889464 18889750 + 307 NA Intergenic Intergenic -3201 FBgn0034808 FBgn0034808 FBtr0071988 CG9896 protein_coding CTCF-S2-jox2017_R1_peak_60 chr2L 4417996 4418436 + 307 NA TTS (FBgn0051963) tRNA-TTS (FBgn0051963) 832 FBgn0051963 FBgn0051963 FBtr0077458 tRNA:CR31963 tRNA CTCF-S2-jox2017_R1_peak_1229 chr3R 12086269 12086935 + 306 NA TTS (FBgn0040071) protein_coding-TTS (FBgn0040071) 3235 FBgn0040237 FBgn0040237 FBtr0083276 bor protein_coding CTCF-S2-jox2017_R1_peak_24 chr2L 1362270 1362579 + 305 NA promoter-TSS (FBgn0053126) protein_coding-promoter-TSS (FBgn0053126) -692 FBgn0053126 FBgn0053126 FBtr0329947 NLaz protein_coding CTCF-S2-jox2017_R1_peak_575 chr2R 17200379 17200697 + 303 NA promoter-TSS (FBgn0034618) protein_coding-promoter-TSS (FBgn0034618) 629 FBgn0034618 FBgn0034618 FBtr0071601 CG9485 protein_coding CTCF-S2-jox2017_R1_peak_1256 chr3R 13442912 13443258 + 301 NA promoter-TSS (FBgn0012002) tRNA-promoter-TSS (FBgn0012002) -398 FBgn0012002 FBgn0012002 FBtr0083466 tRNA:V3b:90BC tRNA CTCF-S2-jox2017_R1_peak_105 chr2L 7281463 7281780 + 301 NA Intergenic Intergenic -4453 FBgn0010453 FBgn0010453 FBtr0089291 Wnt4 protein_coding CTCF-S2-jox2017_R1_peak_301 chr2L 20922875 20923091 + 300 NA promoter-TSS (FBgn0032904) protein_coding-promoter-TSS (FBgn0032904) -107 FBgn0032904 FBgn0032904 FBtr0081439 Mtp protein_coding CTCF-S2-jox2017_R1_peak_800 chr3L 9744575 9745075 + 299 NA promoter-TSS (FBgn0259163) protein_coding-promoter-TSS (FBgn0259163) -149 FBgn0259163 FBgn0259163 FBtr0331539 CG42268 protein_coding CTCF-S2-jox2017_R1_peak_617 chr2R 20701333 20701587 + 299 NA promoter-TSS (FBgn0000157) protein_coding-promoter-TSS (FBgn0000157) -893 FBgn0000157 FBgn0000157 FBtr0300076 Dll protein_coding CTCF-S2-jox2017_R1_peak_1239 chr3R 12624264 12624782 + 298 NA Intergenic Intergenic 10490 FBgn0015230 FBgn0015230 FBtr0083340 Glut3 protein_coding CTCF-S2-jox2017_R1_peak_345 chr2R 2810506 2810929 + 296 NA promoter-TSS (FBgn0033117) protein_coding-promoter-TSS (FBgn0033117) -234 FBgn0033117 FBgn0033117 FBtr0307183 CG3358 protein_coding CTCF-S2-jox2017_R1_peak_39 chr2L 3179774 3180055 + 295 NA intron (FBgn0085422, intron 12 of 12) protein_coding-intron (FBgn0085422, intron 12 of 12) 5925 FBgn0031512 FBgn0031512 FBtr0077578 CG15404 protein_coding CTCF-S2-jox2017_R1_peak_1238 chr3R 12574328 12574678 + 294 NA intron (FBgn0020556, intron 1 of 2) ncRNA-intron (FBgn0020556, intron 2 of 2) -2395 FBgn0020556 FBgn0020556 FBtr0083344 bxd ncRNA CTCF-S2-jox2017_R1_peak_658 chr3L 868885 869133 + 293 NA exon (FBgn0035171, exon 5 of 7) protein_coding-exon (FBgn0035171, exon 5 of 7) 3613 FBgn0035171 FBgn0035171 FBtr0304699 CG12502 protein_coding CTCF-S2-jox2017_R1_peak_1182 chr3R 8047868 8048121 + 293 NA promoter-TSS (FBgn0038000) protein_coding-promoter-TSS (FBgn0038000) -115 FBgn0038000 FBgn0038000 FBtr0082559 CG10014 protein_coding CTCF-S2-jox2017_R1_peak_436 chr2R 8161621 8162304 + 292 NA exon (FBgn0000253, exon 5 of 5) protein_coding-exon (FBgn0000253, exon 5 of 5) 9897 FBgn0000253 FBgn0000253 FBtr0088002 Cam protein_coding CTCF-S2-jox2017_R1_peak_1785 chrX 1846902 1847500 + 291 NA intron (FBgn0264562, intron 2 of 11) protein_coding-intron (FBgn0264562, intron 2 of 11) 11228 FBgn0264562 FBgn0264562 FBtr0333339 Hr4 protein_coding CTCF-S2-jox2017_R1_peak_236 chr2L 15643818 15644189 + 291 NA TTS (FBgn0028863) protein_coding-TTS (FBgn0028863) 13919 FBgn0028518 FBgn0028518 FBtr0080755 CG18480 protein_coding CTCF-S2-jox2017_R1_peak_1910 chrX 10975867 10976167 + 290 NA intron (FBgn0003366, intron 2 of 11) protein_coding-intron (FBgn0003366, intron 2 of 11) 4315 FBgn0003366 FBgn0003366 FBtr0073393 sev protein_coding CTCF-S2-jox2017_R1_peak_1555 chrUextra 5223990 5224508 + 290 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1247 chr3R 12760494 12760803 + 289 NA promoter-TSS (FBgn0000015) protein_coding-promoter-TSS (FBgn0000015) -3313 FBgn0000015 FBgn0000015 FBtr0330709 Abd-B protein_coding CTCF-S2-jox2017_R1_peak_1430 chr3R 25542716 25543218 + 288 NA promoter-TSS (FBgn0039685) protein_coding-promoter-TSS (FBgn0039685) -349 FBgn0039685 FBgn0039685 FBtr0085462 Obp99b protein_coding CTCF-S2-jox2017_R1_peak_941 chr3L 17981310 17981588 + 286 NA intron (FBgn0000568, intron 4 of 7) protein_coding-intron (FBgn0000568, intron 2 of 5) 14729 FBgn0086081 FBgn0086081 FBtr0114357 snoRNA:Me28S-A30 snoRNA CTCF-S2-jox2017_R1_peak_499 chr2R 11706014 11706346 + 286 NA TTS (FBgn0053465) protein_coding-TTS (FBgn0053465) 2420 FBgn0053465 FBgn0053465 FBtr0301048 CG33465 protein_coding CTCF-S2-jox2017_R1_peak_433 chr2R 7985066 7985299 + 285 NA intron (FBgn0086677, intron 1 of 2) protein_coding-intron (FBgn0086677, intron 1 of 2) 16401 FBgn0033680 FBgn0033680 FBtr0087981 CG13186 protein_coding CTCF-S2-jox2017_R1_peak_1471 chr3RHet 2107029 2107354 + 282 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_653 chr3L 606999 607339 + 279 NA promoter-TSS (FBgn0016715) protein_coding-promoter-TSS (FBgn0016715) -600 FBgn0016715 FBgn0016715 FBtr0072561 Reg-2 protein_coding CTCF-S2-jox2017_R1_peak_9 chr2L 414579 414936 + 277 NA promoter-TSS (FBgn0263933) protein_coding-promoter-TSS (FBgn0263933) -310 FBgn0263933 FBgn0263933 FBtr0078055 ebi protein_coding CTCF-S2-jox2017_R1_peak_194 chr2L 12424581 12424876 + 276 NA promoter-TSS (FBgn0032428) protein_coding-promoter-TSS (FBgn0032428) -176 FBgn0032428 FBgn0032428 FBtr0080366 CG6405 protein_coding CTCF-S2-jox2017_R1_peak_1164 chr3R 6490580 6490953 + 272 NA Intergenic Intergenic 8598 FBgn0085333 FBgn0085333 FBtr0112500 CG34304 protein_coding CTCF-S2-jox2017_R1_peak_1116 chr3R 3807148 3807501 + 269 NA TTS (FBgn0037534) protein_coding-TTS (FBgn0037534) -1280 FBgn0259974 FBgn0259974 FBtr0300322 Sfp84E protein_coding CTCF-S2-jox2017_R1_peak_2003 chrX 18023287 18023582 + 268 NA TTS (FBgn0262607) protein_coding-TTS (FBgn0262607) 777 FBgn0262607 FBgn0262607 FBtr0305281 CG43133 protein_coding CTCF-S2-jox2017_R1_peak_1235 chr3R 12399609 12399951 + 266 NA promoter-TSS (FBgn0038446) protein_coding-promoter-TSS (FBgn0038446) -200 FBgn0038446 FBgn0038446 FBtr0083303 CG14903 protein_coding CTCF-S2-jox2017_R1_peak_871 chr3L 13838346 13838695 + 265 NA promoter-TSS (FBgn0029167) protein_coding-promoter-TSS (FBgn0029167) -634 FBgn0029167 FBgn0029167 FBtr0333020 Hml protein_coding CTCF-S2-jox2017_R1_peak_620 chr2R 21070433 21070868 + 262 NA TTS (FBgn0035094) protein_coding-TTS (FBgn0035094) 5681 FBgn0035094 FBgn0035094 FBtr0333170 CG9380 protein_coding CTCF-S2-jox2017_R1_peak_564 chr2R 16794079 16794358 + 262 NA Intergenic Intergenic -2991 FBgn0034560 FBgn0034560 FBtr0071517 CG9235 protein_coding CTCF-S2-jox2017_R1_peak_1610 chrUextra 18119379 18119766 + 261 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_824 chr3L 10879112 10879348 + 258 NA promoter-TSS (FBgn0027615) protein_coding-promoter-TSS (FBgn0027615) -80 FBgn0027615 FBgn0027615 FBtr0076271 CG6404 protein_coding CTCF-S2-jox2017_R1_peak_1157 chr3R 6262792 6263077 + 254 NA TTS (FBgn0037817) protein_coding-TTS (FBgn0037817) 2423 FBgn0037817 FBgn0037817 FBtr0301283 Cyp12e1 protein_coding CTCF-S2-jox2017_R1_peak_1891 chrX 9581715 9582143 + 254 NA promoter-TSS (FBgn0261522) protein_coding-promoter-TSS (FBgn0261522) -293 FBgn0261522 FBgn0261522 FBtr0302457 CG42657 protein_coding CTCF-S2-jox2017_R1_peak_1406 chr3R 23373048 23373443 + 254 NA TTS (FBgn0046885) protein_coding-TTS (FBgn0046885) 1471 FBgn0046885 FBgn0046885 FBtr0085188 Gr98d protein_coding CTCF-S2-jox2017_R1_peak_969 chr3L 19133494 19133757 + 254 NA TTS (FBgn0016797) protein_coding-TTS (FBgn0016797) -1550 FBgn0036851 FBgn0036851 FBtr0330092 CG14082 protein_coding CTCF-S2-jox2017_R1_peak_1449 chr3R 26959814 26960045 + 250 NA promoter-TSS (FBgn0013973) protein_coding-promoter-TSS (FBgn0013973) -185 FBgn0013973 FBgn0013973 FBtr0085753 Gycbeta100B protein_coding CTCF-S2-jox2017_R1_peak_269 chr2L 18776566 18776890 + 248 NA intron (FBgn0045852, intron 2 of 7) protein_coding-intron (FBgn0045852, intron 2 of 7) -2891 FBgn0264348 FBgn0264348 FBtr0332018 CR43804 ncRNA CTCF-S2-jox2017_R1_peak_686 chr3L 3288479 3288854 + 248 NA intron (FBgn0035429, intron 5 of 6) protein_coding-intron (FBgn0035429, intron 5 of 6) -2793 FBgn0035430 FBgn0035430 FBtr0073053 CG12009 protein_coding CTCF-S2-jox2017_R1_peak_971 chr3L 19287451 19287732 + 248 NA promoter-TSS (FBgn0028380) protein_coding-promoter-TSS (FBgn0028380) -276 FBgn0028380 FBgn0028380 FBtr0321324 fal protein_coding CTCF-S2-jox2017_R1_peak_1892 chrX 9643431 9643681 + 247 NA intron (FBgn0020378, intron 1 of 2) protein_coding-intron (FBgn0020378, intron 2 of 2) 19875 FBgn0020378 FBgn0020378 FBtr0331335 Sp1 protein_coding CTCF-S2-jox2017_R1_peak_852 chr3L 12059825 12060080 + 246 NA TTS (FBgn0250876) protein_coding-TTS (FBgn0250876) -1993 FBgn0041096 FBgn0041096 FBtr0334109 rols protein_coding CTCF-S2-jox2017_R1_peak_1396 chr3R 22392538 22392792 + 243 NA exon (FBgn0263289, exon 7 of 23) protein_coding-exon (FBgn0263289, exon 7 of 23) 30593 FBgn0263289 FBgn0263289 FBtr0308629 scrib protein_coding CTCF-S2-jox2017_R1_peak_866 chr3L 13220628 13220872 + 242 NA Intergenic Intergenic -1042 FBgn0023095 FBgn0023095 FBtr0305480 caps protein_coding CTCF-S2-jox2017_R1_peak_943 chr3L 18012755 18013067 + 242 NA intron (FBgn0000568, intron 3 of 7) protein_coding-intron (FBgn0000568, intron 1 of 5) -16733 FBgn0086081 FBgn0086081 FBtr0114357 snoRNA:Me28S-A30 snoRNA CTCF-S2-jox2017_R1_peak_611 chr2R 20225080 20225353 + 241 NA Intergenic Intergenic -3387 FBgn0005638 FBgn0005638 FBtr0072272 slbo protein_coding CTCF-S2-jox2017_R1_peak_587 chr2R 18185318 18185611 + 241 NA TTS (FBgn0034718) protein_coding-TTS (FBgn0034718) 4542 FBgn0034717 FBgn0034717 FBtr0071812 CG5819 protein_coding CTCF-S2-jox2017_R1_peak_1998 chrX 17714290 17714637 + 241 NA promoter-TSS (FBgn0030868) protein_coding-promoter-TSS (FBgn0030868) -745 FBgn0030868 FBgn0030868 FBtr0074474 CG12986 protein_coding CTCF-S2-jox2017_R1_peak_1990 chrX 17069675 17070170 + 241 NA intron (FBgn0000163, intron 1 of 6) protein_coding-intron (FBgn0000163, intron 1 of 6) -11052 FBgn0000163 FBgn0000163 FBtr0111000 baz protein_coding CTCF-S2-jox2017_R1_peak_1996 chrX 17645575 17646138 + 240 NA TTS (FBgn0261570) protein_coding-TTS (FBgn0261570) -17560 FBgn0024184 FBgn0024184 FBtr0074460 unc-4 protein_coding CTCF-S2-jox2017_R1_peak_1325 chr3R 17313494 17313878 + 240 NA TTS (FBgn0038889) protein_coding-TTS (FBgn0038889) 5639 FBgn0038889 FBgn0038889 FBtr0084109 CG7922 protein_coding CTCF-S2-jox2017_R1_peak_1343 chr3R 18993461 18993749 + 238 NA promoter-TSS (FBgn0039060) protein_coding-promoter-TSS (FBgn0039060) -519 FBgn0039060 FBgn0039060 FBtr0084370 CG13836 protein_coding CTCF-S2-jox2017_R1_peak_923 chr3L 16762852 16763361 + 238 NA intron (FBgn0004108, intron 1 of 2) protein_coding-intron (FBgn0004108, intron 1 of 2) 3934 FBgn0004108 FBgn0004108 FBtr0075323 Nrt protein_coding CTCF-S2-jox2017_R1_peak_549 chr2R 15614738 15615167 + 237 NA promoter-TSS (FBgn0011849) tRNA-promoter-TSS (FBgn0011849) 84 FBgn0011849 FBgn0011849 FBtr0086447 tRNA:E4:56Fb tRNA CTCF-S2-jox2017_R1_peak_286 chr2L 19817122 19817389 + 235 NA TTS (FBgn0043021) snRNA-TTS (FBgn0043021) 841 FBgn0043021 FBgn0043021 FBtr0081294 snRNA:U5:38ABb snRNA CTCF-S2-jox2017_R1_peak_507 chr2R 12481862 12482557 + 235 NA promoter-TSS (FBgn0034142) protein_coding-promoter-TSS (FBgn0034142) 9 FBgn0034142 FBgn0034142 FBtr0087120 CG8306 protein_coding CTCF-S2-jox2017_R1_peak_793 chr3L 9326839 9327181 + 233 NA promoter-TSS (FBgn0035975) protein_coding-promoter-TSS (FBgn0035975) -1779 FBgn0035975 FBgn0035975 FBtr0076433 PGRP-LA protein_coding CTCF-S2-jox2017_R1_peak_1551 chrUextra 3094437 3094779 + 232 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1804 chrX 3086438 3086715 + 230 NA intron (FBgn0000479, intron 2 of 14) protein_coding-intron (FBgn0000479, intron 1 of 14) 16103 FBgn0000479 FBgn0000479 FBtr0070522 dnc protein_coding CTCF-S2-jox2017_R1_peak_1224 chr3R 11629783 11630024 + 230 NA promoter-TSS (FBgn0026616) protein_coding-promoter-TSS (FBgn0026616) -71 FBgn0026616 FBgn0026616 FBtr0083179 alpha-Man-IIb protein_coding CTCF-S2-jox2017_R1_peak_758 chr3L 6987808 6988072 + 229 NA TTS (FBgn0045759) protein_coding-TTS (FBgn0045759) -4003 FBgn0260660 FBgn0260660 FBtr0308094 mp protein_coding CTCF-S2-jox2017_R1_peak_1006 chr3L 21476951 21477303 + 228 NA TTS (FBgn0037085) protein_coding-TTS (FBgn0037085) 6559 FBgn0037085 FBgn0037085 FBtr0078394 Neu2 protein_coding CTCF-S2-jox2017_R1_peak_1371 chr3R 20938292 20938629 + 228 NA promoter-TSS (FBgn0039277) protein_coding-promoter-TSS (FBgn0039277) -222 FBgn0039277 FBgn0039277 FBtr0113286 CG13650 protein_coding CTCF-S2-jox2017_R1_peak_232 chr2L 15498791 15499101 + 228 NA promoter-TSS (FBgn0002524) protein_coding-promoter-TSS (FBgn0002524) -164 FBgn0002524 FBgn0002524 FBtr0080738 lace protein_coding CTCF-S2-jox2017_R1_peak_916 chr3L 16400909 16401308 + 228 NA intron (FBgn0014163, intron 1 of 4) protein_coding-intron (FBgn0014163, intron 1 of 4) 155 FBgn0014163 FBgn0014163 FBtr0100477 fax protein_coding CTCF-S2-jox2017_R1_peak_478 chr2R 10511967 10512276 + 225 NA TTS (FBgn0082930) snoRNA-TTS (FBgn0082930) 363 FBgn0082919 FBgn0082919 FBtr0113511 snoRNA:Or-CD4 snoRNA CTCF-S2-jox2017_R1_peak_661 chr3L 1041542 1041846 + 225 NA intron (FBgn0004870, intron 1 of 3) protein_coding-intron (FBgn0004870, intron 1 of 3) 6509 FBgn0035181 FBgn0035181 FBtr0072622 CG9205 protein_coding CTCF-S2-jox2017_R1_peak_571 chr2R 17126381 17126690 + 224 NA intron (FBgn0034606, intron 1 of 7) protein_coding-intron (FBgn0034606, intron 1 of 7) 12120 FBgn0034606 FBgn0034606 FBtr0071623 ASPP protein_coding CTCF-S2-jox2017_R1_peak_592 chr2R 18694328 18694814 + 224 NA promoter-TSS (FBgn0000405) protein_coding-promoter-TSS (FBgn0000405) -81 FBgn0000405 FBgn0000405 FBtr0071914 CycB protein_coding CTCF-S2-jox2017_R1_peak_20 chr2L 1006611 1006933 + 224 NA Intergenic Intergenic 20118 FBgn0031295 FBgn0031295 FBtr0310271 CG4375 protein_coding CTCF-S2-jox2017_R1_peak_95 chr2L 6593396 6593629 + 223 NA intron (FBgn0031835, intron 1 of 15) protein_coding-intron (FBgn0031835, intron 1 of 15) 7554 FBgn0031835 FBgn0031835 FBtr0089641 CG11319 protein_coding CTCF-S2-jox2017_R1_peak_357 chr2R 3940200 3940488 + 221 NA TTS (FBgn0033252) protein_coding-TTS (FBgn0033252) 5712 FBgn0033252 FBgn0033252 FBtr0088828 CG12769 protein_coding CTCF-S2-jox2017_R1_peak_920 chr3L 16698767 16699078 + 221 NA exon (FBgn0036654, exon 2 of 2) protein_coding-exon (FBgn0036654, exon 2 of 2) 849 FBgn0036654 FBgn0036654 FBtr0075317 CG9692 protein_coding CTCF-S2-jox2017_R1_peak_11 chr2L 492018 492517 + 220 NA intron (FBgn0003963, intron 2 of 8) protein_coding-intron (FBgn0003963, intron 1 of 7) -12579 FBgn0043364 FBgn0043364 FBtr0310030 cbt protein_coding CTCF-S2-jox2017_R1_peak_1361 chr3R 20303212 20303558 + 220 NA Intergenic Intergenic -7874 FBgn0000039 FBgn0000039 FBtr0084640 nAcRalpha-96Ab protein_coding CTCF-S2-jox2017_R1_peak_77 chr2L 5365771 5366247 + 219 NA TTS (FBgn0016920) protein_coding-TTS (FBgn0016920) 15065 FBgn0262097 FBgn0262097 FBtr0310549 CG42850 protein_coding CTCF-S2-jox2017_R1_peak_291 chr2L 20106551 20106992 + 218 NA Intergenic Intergenic -2681 FBgn0032851 FBgn0032851 FBtr0089388 CG13970 protein_coding CTCF-S2-jox2017_R1_peak_386 chr2R 5707614 5707891 + 218 NA promoter-TSS (FBgn0033446) protein_coding-promoter-TSS (FBgn0033446) -316 FBgn0054033 FBgn0054033 FBtr0100088 CG34033 protein_coding CTCF-S2-jox2017_R1_peak_1087 chr3R 1996464 1996883 + 217 NA TTS (FBgn0037405) protein_coding-TTS (FBgn0037405) -2694 FBgn0037406 FBgn0037406 FBtr0078588 Osi1 protein_coding CTCF-S2-jox2017_R1_peak_500 chr2R 11708808 11709092 + 217 NA promoter-TSS (FBgn0053465) protein_coding-promoter-TSS (FBgn0053465) -350 FBgn0053465 FBgn0053465 FBtr0301048 CG33465 protein_coding CTCF-S2-jox2017_R1_peak_431 chr2R 7712623 7712961 + 215 NA promoter-TSS (FBgn0033653) protein_coding-promoter-TSS (FBgn0033653) -78 FBgn0033653 FBgn0033653 FBtr0088031 CG13192 protein_coding CTCF-S2-jox2017_R1_peak_1120 chr3R 4215446 4215793 + 213 NA intron (FBgn0263416, intron 14 of 15) protein_coding-intron (FBgn0263416, intron 14 of 15) -1695 FBgn0051462 FBgn0051462 FBtr0081851 CG31462 protein_coding CTCF-S2-jox2017_R1_peak_528 chr2R 14401492 14401753 + 212 NA promoter-TSS (FBgn0262476) protein_coding-promoter-TSS (FBgn0262476) -507 FBgn0262476 FBgn0262476 FBtr0304867 CG43066 protein_coding CTCF-S2-jox2017_R1_peak_1316 chr3R 16843244 16843529 + 211 NA promoter-TSS (FBgn0026056) protein_coding-promoter-TSS (FBgn0026056) -37 FBgn0026056 FBgn0026056 FBtr0084002 Rlip protein_coding CTCF-S2-jox2017_R1_peak_51 chr2L 3786225 3786583 + 210 NA promoter-TSS (FBgn0031571) protein_coding-promoter-TSS (FBgn0031571) 585 FBgn0051958 FBgn0051958 FBtr0077495 CG31958 protein_coding CTCF-S2-jox2017_R1_peak_998 chr3L 20791553 20791863 + 210 NA promoter-TSS (FBgn0037024) protein_coding-promoter-TSS (FBgn0037024) -74 FBgn0037024 FBgn0037024 FBtr0078253 CG4365 protein_coding CTCF-S2-jox2017_R1_peak_1824 chrX 4401198 4401483 + 210 NA intron (FBgn0052773, intron 2 of 4) protein_coding-intron (FBgn0052773, intron 2 of 4) -22924 FBgn0029708 FBgn0029708 FBtr0070674 CG3556 protein_coding CTCF-S2-jox2017_R1_peak_1909 chrX 10726446 10726707 + 208 NA TTS (FBgn0003321) protein_coding-TTS (FBgn0003321) -6687 FBgn0040850 FBgn0040850 FBtr0073377 CG15210 protein_coding CTCF-S2-jox2017_R1_peak_1416 chr3R 24461339 24461632 + 206 NA promoter-TSS (FBgn0039591) protein_coding-promoter-TSS (FBgn0039591) -649 FBgn0039591 FBgn0039591 FBtr0085305 CG9988 protein_coding CTCF-S2-jox2017_R1_peak_2008 chrX 18133412 18133660 + 206 NA Intergenic Intergenic 3781 FBgn0030904 FBgn0030904 FBtr0300182 upd2 protein_coding CTCF-S2-jox2017_R1_peak_566 chr2R 16825574 16826121 + 205 NA Intergenic Intergenic -5686 FBgn0000044 FBgn0000044 FBtr0300946 Act57B protein_coding CTCF-S2-jox2017_R1_peak_999 chr3L 20834618 20834904 + 205 NA promoter-TSS (FBgn0037031) protein_coding-promoter-TSS (FBgn0037031) -85 FBgn0027055 FBgn0027055 FBtr0078269 CSN3 protein_coding CTCF-S2-jox2017_R1_peak_182 chr2L 12078189 12078485 + 203 NA TTS (FBgn0032406) protein_coding-TTS (FBgn0032406) 1514 FBgn0032406 FBgn0032406 FBtr0080297 CG14947 protein_coding CTCF-S2-jox2017_R1_peak_1878 chrX 8570686 8571170 + 202 NA promoter-TSS (FBgn0030055) protein_coding-promoter-TSS (FBgn0030055) -168 FBgn0030055 FBgn0030055 FBtr0071221 CG12772 protein_coding CTCF-S2-jox2017_R1_peak_1099 chr3R 2737952 2738209 + 201 NA intron (FBgn0260642, intron 2 of 6) protein_coding-intron (FBgn0260642, intron 1 of 4) -7676 FBgn0262897 FBgn0262897 FBtr0306313 CG43252 protein_coding CTCF-S2-jox2017_R1_peak_1444 chr3R 26696283 26696578 + 199 NA TTS (FBgn0039806) protein_coding-TTS (FBgn0039806) 1572 FBgn0039806 FBgn0039806 FBtr0085719 CG15545 protein_coding CTCF-S2-jox2017_R1_peak_1803 chrX 3028592 3028918 + 198 NA promoter-TSS (FBgn0004647) protein_coding-promoter-TSS (FBgn0004647) -150 FBgn0004647 FBgn0004647 FBtr0304659 N protein_coding CTCF-S2-jox2017_R1_peak_512 chr2R 12759520 12759780 + 197 NA promoter-TSS (FBgn0025827) protein_coding-promoter-TSS (FBgn0025827) -105 FBgn0025827 FBgn0025827 FBtr0087043 CG6421 protein_coding CTCF-S2-jox2017_R1_peak_479 chr2R 10541342 10541684 + 197 NA Intergenic Intergenic 4747 FBgn0033952 FBgn0033952 FBtr0087482 Adgf-E protein_coding CTCF-S2-jox2017_R1_peak_1906 chrX 10631974 10632435 + 197 NA intron (FBgn0052676, intron 1 of 3) protein_coding-intron (FBgn0052676, intron 1 of 3) -6331 FBgn0003204 FBgn0003204 FBtr0071496 ras protein_coding CTCF-S2-jox2017_R1_peak_948 chr3L 18107433 18107844 + 196 NA exon (FBgn0052195, exon 2 of 4) protein_coding-exon (FBgn0052195, exon 2 of 4) 254 FBgn0052195 FBgn0052195 FBtr0333697 CG32195 protein_coding CTCF-S2-jox2017_R1_peak_1531 chrU 4022770 4023097 + 193 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1812 chrX 3620037 3620425 + 192 NA intron (FBgn0086899, intron 1 of 7) protein_coding-intron (FBgn0086899, intron 1 of 7) -6566 FBgn0015286 FBgn0015286 FBtr0070584 Rala protein_coding CTCF-S2-jox2017_R1_peak_1901 chrX 10536279 10536652 + 189 NA intron (FBgn0052677, intron 2 of 12) protein_coding-intron (FBgn0052677, intron 2 of 14) 14695 FBgn0052677 FBgn0052677 FBtr0071493 X11Lbeta protein_coding CTCF-S2-jox2017_R1_peak_377 chr2R 5004726 5005150 + 187 NA exon (FBgn0003612, exon 2 of 8) protein_coding-exon (FBgn0003612, exon 2 of 8) 1307 FBgn0003612 FBgn0003612 FBtr0088578 Su(var)2-10 protein_coding CTCF-S2-jox2017_R1_peak_1345 chr3R 19157098 19157355 + 187 NA intron (FBgn0003118, intron 3 of 8) protein_coding-intron (FBgn0003118, intron 3 of 8) 14658 FBgn0003118 FBgn0003118 FBtr0089715 pnt protein_coding CTCF-S2-jox2017_R1_peak_1156 chr3R 6241698 6241950 + 186 NA promoter-TSS (FBgn0037816) protein_coding-promoter-TSS (FBgn0037816) -58 FBgn0037816 FBgn0037816 FBtr0082258 CG6345 protein_coding CTCF-S2-jox2017_R1_peak_14 chr2L 602330 602665 + 184 NA promoter-TSS (FBgn0031270) protein_coding-promoter-TSS (FBgn0031270) -316 FBgn0031270 FBgn0031270 FBtr0078071 CG13689 protein_coding CTCF-S2-jox2017_R1_peak_2035 chrX 20256924 20257133 + 184 NA Intergenic Intergenic -1939 FBgn0085340 FBgn0085340 FBtr0112509 CR34311 pseudogene CTCF-S2-jox2017_R1_peak_1269 chr3R 13744756 13745145 + 184 NA promoter-TSS (FBgn0263995) protein_coding-promoter-TSS (FBgn0263995) -2650 FBgn0053547 FBgn0053547 FBtr0305019 Rim protein_coding CTCF-S2-jox2017_R1_peak_1410 chr3R 24171077 24171421 + 184 NA TTS (FBgn0039581) protein_coding-TTS (FBgn0039581) 5189 FBgn0039581 FBgn0039581 FBtr0300346 Moca-cyp protein_coding CTCF-S2-jox2017_R1_peak_1255 chr3R 13442310 13442663 + 183 NA promoter-TSS (FBgn0012002) tRNA-promoter-TSS (FBgn0012002) -997 FBgn0012002 FBgn0012002 FBtr0083466 tRNA:V3b:90BC tRNA CTCF-S2-jox2017_R1_peak_164 chr2L 10940252 10940464 + 183 NA intron (FBgn0261871, intron 2 of 8) protein_coding-intron (FBgn0261871, intron 2 of 7) 3696 FBgn0032318 FBgn0032318 FBtr0080145 CG14072 protein_coding CTCF-S2-jox2017_R1_peak_1180 chr3R 7491252 7491485 + 183 NA intron (FBgn0259227, intron 1 of 4) protein_coding-intron (FBgn0259227, intron 1 of 4) -8573 FBgn0037930 FBgn0037930 FBtr0082423 CG14715 protein_coding CTCF-S2-jox2017_R1_peak_1137 chr3R 5400029 5400319 + 182 NA promoter-TSS (FBgn0037715) protein_coding-promoter-TSS (FBgn0037715) -247 FBgn0037715 FBgn0037715 FBtr0082109 CG9399 protein_coding CTCF-S2-jox2017_R1_peak_962 chr3L 18841556 18841990 + 181 NA Intergenic Intergenic 7094 FBgn0052027 FBgn0052027 FBtr0307116 CR32027 ncRNA CTCF-S2-jox2017_R1_peak_257 chr2L 17960190 17960550 + 180 NA Intergenic Intergenic -3044 FBgn0032656 FBgn0032656 FBtr0290267 CG5674 protein_coding CTCF-S2-jox2017_R1_peak_603 chr2R 19489305 19489591 + 179 NA promoter-TSS (FBgn0034882) protein_coding-promoter-TSS (FBgn0034882) -152 FBgn0067903 FBgn0067903 FBtr0091694 IM18 protein_coding CTCF-S2-jox2017_R1_peak_786 chr3L 9047941 9048235 + 179 NA intron (FBgn0000116, intron 2 of 2) protein_coding-intron (FBgn0000116, intron 3 of 3) -1427 FBgn0000116 FBgn0000116 FBtr0076546 Argk protein_coding CTCF-S2-jox2017_R1_peak_136 chr2L 9539979 9540271 + 179 NA promoter-TSS (FBgn0032124) protein_coding-promoter-TSS (FBgn0032124) -506 FBgn0032124 FBgn0032124 FBtr0079830 CG17855 protein_coding CTCF-S2-jox2017_R1_peak_1196 chr3R 9297132 9297373 + 179 NA Intergenic Intergenic -5424 FBgn0040554 FBgn0040554 FBtr0309274 CR17025 ncRNA CTCF-S2-jox2017_R1_peak_117 chr2L 7953415 7953723 + 178 NA intron (FBgn0085450, intron 2 of 2) protein_coding-intron (FBgn0085450, intron 1 of 1) 23496 FBgn0085450 FBgn0085450 FBtr0112720 Snoo protein_coding CTCF-S2-jox2017_R1_peak_1635 chrUextra 24365669 24366008 + 178 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1653 chrUextra 26550114 26550493 + 177 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_739 chr3L 5862769 5863120 + 177 NA Intergenic Intergenic -1657 FBgn0035641 FBgn0035641 FBtr0077025 CG5568 protein_coding CTCF-S2-jox2017_R1_peak_25 chr2L 1491878 1492585 + 175 NA promoter-TSS (FBgn0051928) protein_coding-promoter-TSS (FBgn0051928) -64 FBgn0051928 FBgn0051928 FBtr0077929 CG31928 protein_coding CTCF-S2-jox2017_R1_peak_1890 chrX 9552912 9553178 + 175 NA TTS (FBgn0030148) protein_coding-TTS (FBgn0030148) 3746 FBgn0030148 FBgn0030148 FBtr0071403 CG3106 protein_coding CTCF-S2-jox2017_R1_peak_1849 chrX 5801971 5802263 + 175 NA promoter-TSS (FBgn0029822) protein_coding-promoter-TSS (FBgn0029822) -41 FBgn0029822 FBgn0029822 FBtr0070826 CG12236 protein_coding CTCF-S2-jox2017_R1_peak_86 chr2L 6323482 6323789 + 175 NA promoter-TSS (FBgn0021873) protein_coding-promoter-TSS (FBgn0021873) -132 FBgn0021873 FBgn0021873 FBtr0300039 Gef26 protein_coding CTCF-S2-jox2017_R1_peak_1490 chr4 437009 437325 + 172 NA Intergenic Intergenic -9526 FBgn0263385 FBgn0263385 FBtr0309072 CR43437 ncRNA CTCF-S2-jox2017_R1_peak_2036 chrX 20396037 20396347 + 172 NA promoter-TSS (FBgn0026323) protein_coding-promoter-TSS (FBgn0026323) -239 FBgn0026323 FBgn0026323 FBtr0077319 Tak1 protein_coding CTCF-S2-jox2017_R1_peak_2020 chrX 18737415 18737741 + 171 NA promoter-TSS (FBgn0085451) protein_coding-promoter-TSS (FBgn0085451) -118 FBgn0085451 FBgn0085451 FBtr0310365 CG34422 protein_coding CTCF-S2-jox2017_R1_peak_927 chr3L 16923709 16923963 + 171 NA TTS (FBgn0036678) protein_coding-TTS (FBgn0036678) -3302 FBgn0036677 FBgn0036677 FBtr0075307 CG13023 protein_coding CTCF-S2-jox2017_R1_peak_659 chr3L 882898 883276 + 171 NA intron (FBgn0052479, intron 4 of 9) protein_coding-intron (FBgn0052479, intron 4 of 9) -1074 FBgn0035173 FBgn0035173 FBtr0072593 CG13907 protein_coding CTCF-S2-jox2017_R1_peak_1233 chr3R 12257402 12257754 + 171 NA promoter-TSS (FBgn0051282) tRNA-promoter-TSS (FBgn0051282) -84 FBgn0051282 FBgn0051282 FBtr0083285 tRNA:CR31282 tRNA CTCF-S2-jox2017_R1_peak_253 chr2L 17589697 17590216 + 170 NA promoter-TSS (FBgn0032651) protein_coding-promoter-TSS (FBgn0032651) -184 FBgn0032651 FBgn0032651 FBtr0303253 Oli protein_coding CTCF-S2-jox2017_R1_peak_1608 chrUextra 17985561 17985861 + 169 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_933 chr3L 17230129 17230408 + 169 NA intron (FBgn0260943, intron 1 of 14) protein_coding-intron (FBgn0260943, intron 1 of 14) 1044 FBgn0260943 FBgn0260943 FBtr0113427 Rbp6 protein_coding CTCF-S2-jox2017_R1_peak_228 chr2L 15113228 15113464 + 167 NA promoter-TSS (FBgn0001978) protein_coding-promoter-TSS (FBgn0001978) -134 FBgn0001978 FBgn0001978 FBtr0332474 stc protein_coding CTCF-S2-jox2017_R1_peak_1575 chrUextra 8511007 8511417 + 167 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_2016 chrX 18529368 18529677 + 165 NA promoter-TSS (FBgn0030941) protein_coding-promoter-TSS (FBgn0030941) -586 FBgn0030941 FBgn0030941 FBtr0074617 wgn protein_coding CTCF-S2-jox2017_R1_peak_1193 chr3R 8903057 8903392 + 165 NA exon (FBgn0004666, exon 8 of 8) protein_coding-exon (FBgn0004666, exon 8 of 8) -8722 FBgn0262365 FBgn0262365 FBtr0304647 CG43063 protein_coding CTCF-S2-jox2017_R1_peak_19 chr2L 871604 871859 + 164 NA exon (FBgn0053526, exon 3 of 5) protein_coding-exon (FBgn0053526, exon 3 of 5) 1266 FBgn0053526 FBgn0053526 FBtr0091486 PNUTS protein_coding CTCF-S2-jox2017_R1_peak_371 chr2R 4696071 4696390 + 164 NA intron (FBgn0024189, intron 1 of 21) protein_coding-intron (FBgn0024189, intron 1 of 20) 10208 FBgn0024189 FBgn0024189 FBtr0111043 sns protein_coding CTCF-S2-jox2017_R1_peak_731 chr3L 5601364 5601624 + 164 NA promoter-TSS (FBgn0035624) protein_coding-promoter-TSS (FBgn0035624) -94 FBgn0035624 FBgn0035624 FBtr0077126 Eaf6 protein_coding CTCF-S2-jox2017_R1_peak_1590 chrUextra 13217380 13217529 + 163 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1552 chrUextra 3204675 3204994 + 162 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_743 chr3L 6257599 6257868 + 162 NA Intergenic Intergenic -3473 FBgn0001258 FBgn0001258 FBtr0332066 ImpL3 protein_coding CTCF-S2-jox2017_R1_peak_483 chr2R 10822806 10823129 + 162 NA promoter-TSS (FBgn0033984) protein_coding-promoter-TSS (FBgn0033984) -215 FBgn0033984 FBgn0033984 FBtr0303759 Lap1 protein_coding CTCF-S2-jox2017_R1_peak_1665 chrUextra 27485264 27485617 + 161 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_162 chr2L 10615162 10615461 + 161 NA intron (FBgn0051721, intron 1 of 9) protein_coding-intron (FBgn0051721, intron 1 of 8) 24197 FBgn0032271 FBgn0032271 FBtr0080131 CG7329 protein_coding CTCF-S2-jox2017_R1_peak_741 chr3L 6075815 6076097 + 160 NA promoter-TSS (FBgn0035677) protein_coding-promoter-TSS (FBgn0035677) -27 FBgn0035677 FBgn0035677 FBtr0332064 CG13293 protein_coding CTCF-S2-jox2017_R1_peak_464 chr2R 9855584 9855838 + 160 NA promoter-TSS (FBgn0020766) protein_coding-promoter-TSS (FBgn0020766) -141 FBgn0020766 FBgn0020766 FBtr0087594 Aats-phe protein_coding CTCF-S2-jox2017_R1_peak_116 chr2L 7890779 7891036 + 160 NA promoter-TSS (FBgn0053121) protein_coding-promoter-TSS (FBgn0053121) -313 FBgn0053121 FBgn0053121 FBtr0079557 Spn28Db protein_coding CTCF-S2-jox2017_R1_peak_754 chr3L 6896846 6897365 + 160 NA Intergenic Intergenic 9959 FBgn0041194 FBgn0041194 FBtr0076946 Prat2 protein_coding CTCF-S2-jox2017_R1_peak_1171 chr3R 7094772 7095055 + 160 NA TTS (FBgn0051386) ncRNA-TTS (FBgn0051386) -13068 FBgn0262972 FBgn0262972 FBtr0306728 CR43283 ncRNA CTCF-S2-jox2017_R1_peak_460 chr2R 9716684 9716978 + 159 NA intron (FBgn0033872, intron 1 of 3) protein_coding-intron (FBgn0033872, intron 1 of 3) 2365 FBgn0033872 FBgn0033872 FBtr0087635 CG6329 protein_coding CTCF-S2-jox2017_R1_peak_440 chr2R 8408728 8409063 + 159 NA promoter-TSS (FBgn0053632) protein_coding-promoter-TSS (FBgn0053632) -633 FBgn0053632 FBgn0053632 FBtr0091609 CG33632 protein_coding CTCF-S2-jox2017_R1_peak_870 chr3L 13404205 13404450 + 159 NA TTS (FBgn0036356) protein_coding-TTS (FBgn0036356) 1226 FBgn0036356 FBgn0036356 FBtr0075861 CG10222 protein_coding CTCF-S2-jox2017_R1_peak_359 chr2R 4129166 4129360 + 158 NA Intergenic Intergenic 3899 FBgn0013726 FBgn0013726 FBtr0088793 pnut protein_coding CTCF-S2-jox2017_R1_peak_1774 chrX 903935 904164 + 157 NA Intergenic Intergenic 1627 FBgn0040338 FBgn0040338 FBtr0070184 TfIIA-S-2 protein_coding CTCF-S2-jox2017_R1_peak_1573 chrUextra 8455317 8455703 + 157 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1790 chrX 2152748 2152961 + 157 NA intron (FBgn0023524, intron 1 of 4) protein_coding-intron (FBgn0023524, intron 1 of 4) 1042 FBgn0023524 FBgn0023524 FBtr0070415 CG3078 protein_coding CTCF-S2-jox2017_R1_peak_1317 chr3R 17005354 17005633 + 157 NA intron (FBgn0264357, intron 6 of 12) protein_coding-intron (FBgn0264357, intron 6 of 12) -11566 FBgn0260004 FBgn0260004 FBtr0084027 Snmp1 protein_coding CTCF-S2-jox2017_R1_peak_1631 chrUextra 23887272 23887417 + 156 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1194 chr3R 8904020 8904340 + 156 NA TTS (FBgn0004666) protein_coding-TTS (FBgn0004666) -7766 FBgn0262365 FBgn0262365 FBtr0304647 CG43063 protein_coding CTCF-S2-jox2017_R1_peak_586 chr2R 18021267 18021711 + 155 NA Intergenic Intergenic -2774 FBgn0085234 FBgn0085234 FBtr0112398 CG34205 protein_coding CTCF-S2-jox2017_R1_peak_543 chr2R 15035506 15035895 + 155 NA intron (FBgn0000578, intron 2 of 10) protein_coding-intron (FBgn0000578, intron 1 of 9) 3649 FBgn0263290 FBgn0263290 FBtr0308635 CR43399 ncRNA CTCF-S2-jox2017_R1_peak_1254 chr3R 13275173 13275476 + 154 NA promoter-TSS (FBgn0000564) protein_coding-promoter-TSS (FBgn0000564) -74 FBgn0000564 FBgn0000564 FBtr0083444 Eh protein_coding CTCF-S2-jox2017_R1_peak_550 chr2R 15713778 15714533 + 154 NA promoter-TSS (FBgn0034476) protein_coding-promoter-TSS (FBgn0034476) -255 FBgn0034476 FBgn0034476 FBtr0086336 Toll-7 protein_coding CTCF-S2-jox2017_R1_peak_422 chr2R 7339846 7340122 + 153 NA promoter-TSS (FBgn0000581) protein_coding-promoter-TSS (FBgn0000581) 436 FBgn0000581 FBgn0000581 FBtr0088140 E(Pc) protein_coding CTCF-S2-jox2017_R1_peak_2041 chrX 20631376 20631804 + 151 NA TTS (FBgn0085387) protein_coding-TTS (FBgn0085387) 390 FBgn0264390 FBgn0264390 FBtr0332284 CR43838 ncRNA CTCF-S2-jox2017_R1_peak_798 chr3L 9607128 9607363 + 151 NA promoter-TSS (FBgn0002528) protein_coding-promoter-TSS (FBgn0002528) -769 FBgn0002528 FBgn0002528 FBtr0076382 LanB2 protein_coding CTCF-S2-jox2017_R1_peak_1251 chr3R 12934633 12934898 + 151 NA intron (FBgn0014141, intron 5 of 17) protein_coding-intron (FBgn0014141, intron 4 of 15) -10236 FBgn0014141 FBgn0014141 FBtr0089473 cher protein_coding CTCF-S2-jox2017_R1_peak_889 chr3L 14555784 14556050 + 149 NA TTS (FBgn0054039) protein_coding-TTS (FBgn0054039) -2053 FBgn0028418 FBgn0028418 FBtr0075722 Lk protein_coding CTCF-S2-jox2017_R1_peak_619 chr2R 20972982 20973543 + 148 NA TTS (FBgn0003715) protein_coding-TTS (FBgn0003715) -1419 FBgn0004919 FBgn0004919 FBtr0306330 gol protein_coding CTCF-S2-jox2017_R1_peak_1843 chrX 5457394 5457719 + 147 NA Intergenic Intergenic -3340 FBgn0263512 FBgn0263512 FBtr0100024 Vsx2 protein_coding CTCF-S2-jox2017_R1_peak_1848 chrX 5777486 5777788 + 147 NA TTS (FBgn0029820) protein_coding-TTS (FBgn0029820) 3746 FBgn0029820 FBgn0029820 FBtr0070821 CG16721 protein_coding CTCF-S2-jox2017_R1_peak_1857 chrX 6627653 6627800 + 147 NA intron (FBgn0263415, intron 1 of 1) protein_coding-intron (FBgn0029896, intron 1 of 3) 976 FBgn0263415 FBgn0263415 FBtr0309201 CR43461 ncRNA CTCF-S2-jox2017_R1_peak_96 chr2L 6684675 6684943 + 146 NA promoter-TSS (FBgn0028703) protein_coding-promoter-TSS (FBgn0028703) -452 FBgn0028703 FBgn0028703 FBtr0333347 Nhe3 protein_coding CTCF-S2-jox2017_R1_peak_508 chr2R 12560507 12560750 + 146 NA TTS (FBgn0050463) protein_coding-TTS (FBgn0050463) 1071 FBgn0085487 FBgn0085487 FBtr0112764 CG34458 protein_coding CTCF-S2-jox2017_R1_peak_165 chr2L 10985891 10986381 + 145 NA intron (FBgn0004872, intron 1 of 7) protein_coding-intron (FBgn0004872, intron 1 of 7) 1280 FBgn0004872 FBgn0004872 FBtr0080166 piwi protein_coding CTCF-S2-jox2017_R1_peak_454 chr2R 9340969 9341239 + 145 NA TTS (FBgn0086757) protein_coding-TTS (FBgn0086757) 2935 FBgn0086757 FBgn0086757 FBtr0309887 cbs protein_coding CTCF-S2-jox2017_R1_peak_751 chr3L 6740292 6740530 + 144 NA promoter-TSS (FBgn0035713) protein_coding-promoter-TSS (FBgn0035713) -4147 FBgn0261934 FBgn0261934 FBtr0303748 dikar protein_coding CTCF-S2-jox2017_R1_peak_1538 chrU 9151128 9151462 + 143 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_412 chr2R 6926573 6926861 + 143 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -46374 FBgn0262817 FBgn0262817 FBtr0306049 CG43188 protein_coding CTCF-S2-jox2017_R1_peak_10 chr2L 421439 421651 + 142 NA promoter-TSS (FBgn0031254) protein_coding-promoter-TSS (FBgn0031254) -95 FBgn0031253 FBgn0031253 FBtr0078089 CG11885 protein_coding CTCF-S2-jox2017_R1_peak_75 chr2L 5278342 5278672 + 142 NA promoter-TSS (FBgn0031696) protein_coding-promoter-TSS (FBgn0031696) 51 FBgn0000228 FBgn0000228 FBtr0302567 Bsg25D protein_coding CTCF-S2-jox2017_R1_peak_910 chr3L 15947816 15948094 + 142 NA promoter-TSS (FBgn0036545) protein_coding-promoter-TSS (FBgn0036545) -241 FBgn0036545 FBgn0036545 FBtr0273189 GXIVsPLA2 protein_coding CTCF-S2-jox2017_R1_peak_91 chr2L 6527046 6527304 + 142 NA TTS (FBgn0051637) protein_coding-TTS (FBgn0051637) 3334 FBgn0000320 FBgn0000320 FBtr0306113 eya protein_coding CTCF-S2-jox2017_R1_peak_472 chr2R 10321750 10322026 + 141 NA Intergenic Intergenic -1516 FBgn0261613 FBgn0261613 FBtr0302926 Oaz protein_coding CTCF-S2-jox2017_R1_peak_1912 chrX 11576262 11576472 + 141 NA exon (FBgn0014133, exon 3 of 6) protein_coding-exon (FBgn0014133, exon 3 of 6) 3339 FBgn0014133 FBgn0014133 FBtr0073526 bif protein_coding CTCF-S2-jox2017_R1_peak_1972 chrX 15547501 15547898 + 141 NA Intergenic Intergenic -8919 FBgn0030664 FBgn0030664 FBtr0074051 CG8119 protein_coding CTCF-S2-jox2017_R1_peak_890 chr3L 14600763 14601083 + 140 NA Intergenic Intergenic -6635 FBgn0003388 FBgn0003388 FBtr0304700 shd protein_coding CTCF-S2-jox2017_R1_peak_1488 chr4 425042 425302 + 139 NA Intergenic Intergenic -8744 FBgn0262636 FBgn0262636 FBtr0307044 Lin29 protein_coding CTCF-S2-jox2017_R1_peak_911 chr3L 16004390 16004627 + 139 NA exon (FBgn0263601, exon 1 of 4) protein_coding-exon (FBgn0263601, exon 1 of 4) -1099 FBgn0263601 FBgn0263601 FBtr0333578 mib1 protein_coding CTCF-S2-jox2017_R1_peak_1384 chr3R 21676901 21677148 + 138 NA promoter-TSS (FBgn0039379) protein_coding-promoter-TSS (FBgn0039379) -11 FBgn0040602 FBgn0040602 FBtr0084913 CG14545 protein_coding CTCF-S2-jox2017_R1_peak_1620 chrUextra 22164631 22164974 + 137 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1716 chrUextra 28737203 28737370 + 137 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1012 chr3L 22260474 22260733 + 137 NA promoter-TSS (FBgn0004179) protein_coding-promoter-TSS (FBgn0004179) 242 FBgn0004179 FBgn0004179 FBtr0078494 Csp protein_coding CTCF-S2-jox2017_R1_peak_1450 chr3R 27288787 27289095 + 136 NA promoter-TSS (FBgn0039850) protein_coding-promoter-TSS (FBgn0039850) -126 FBgn0039850 FBgn0039850 FBtr0085789 CG11333 protein_coding CTCF-S2-jox2017_R1_peak_40 chr2L 3183231 3183565 + 136 NA exon (FBgn0085422, exon 12 of 13) protein_coding-exon (FBgn0085422, exon 12 of 13) 9409 FBgn0031512 FBgn0031512 FBtr0077578 CG15404 protein_coding CTCF-S2-jox2017_R1_peak_891 chr3L 14664741 14665025 + 135 NA TTS (FBgn0041604) protein_coding-TTS (FBgn0041604) 654 FBgn0262581 FBgn0262581 FBtr0304960 CG43121 protein_coding CTCF-S2-jox2017_R1_peak_408 chr2R 6442728 6443181 + 135 NA Intergenic Intergenic -2439 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding CTCF-S2-jox2017_R1_peak_1342 chr3R 18985077 18985353 + 132 NA promoter-TSS (FBgn0039058) protein_coding-promoter-TSS (FBgn0039058) -177 FBgn0039058 FBgn0039058 FBtr0084401 VhaAC39-2 protein_coding CTCF-S2-jox2017_R1_peak_2009 chrX 18251988 18252346 + 131 NA promoter-TSS (FBgn0030914) protein_coding-promoter-TSS (FBgn0030914) -749 FBgn0030914 FBgn0030914 FBtr0074553 CG6106 protein_coding CTCF-S2-jox2017_R1_peak_1431 chr3R 25729712 25729941 + 131 NA promoter-TSS (FBgn0039718) protein_coding-promoter-TSS (FBgn0039718) -303 FBgn0039718 FBgn0039718 FBtr0085515 CG15517 protein_coding CTCF-S2-jox2017_R1_peak_1209 chr3R 10403018 10403324 + 131 NA exon (FBgn0020299, exon 1 of 7) protein_coding-exon (FBgn0020299, exon 1 of 7) 230 FBgn0020299 FBgn0020299 FBtr0082959 stumps protein_coding CTCF-S2-jox2017_R1_peak_421 chr2R 7323183 7323375 + 130 NA promoter-TSS (FBgn0033635) protein_coding-promoter-TSS (FBgn0033635) -472 FBgn0033635 FBgn0033635 FBtr0305074 CG7777 protein_coding CTCF-S2-jox2017_R1_peak_1606 chrUextra 17373694 17374014 + 130 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1188 chr3R 8549605 8549836 + 128 NA Intergenic Intergenic -4206 FBgn0002719 FBgn0002719 FBtr0330025 Men protein_coding CTCF-S2-jox2017_R1_peak_1443 chr3R 26640414 26640624 + 128 NA intron (FBgn0027598, intron 1 of 5) protein_coding-intron (FBgn0027598, intron 1 of 5) 6181 FBgn0027598 FBgn0027598 FBtr0310072 cindr protein_coding CTCF-S2-jox2017_R1_peak_567 chr2R 16864385 16864605 + 128 NA promoter-TSS (FBgn0034564) protein_coding-promoter-TSS (FBgn0034564) -66 FBgn0034564 FBgn0034564 FBtr0071520 CG9344 protein_coding CTCF-S2-jox2017_R1_peak_1821 chrX 3999818 4000067 + 128 NA promoter-TSS (FBgn0026084) protein_coding-promoter-TSS (FBgn0026084) 1565 FBgn0000221 FBgn0000221 FBtr0070638 brn protein_coding CTCF-S2-jox2017_R1_peak_747 chr3L 6682134 6682405 + 127 NA TTS (FBgn0035710) protein_coding-TTS (FBgn0035710) 3485 FBgn0035710 FBgn0035710 FBtr0076960 SP1173 protein_coding CTCF-S2-jox2017_R1_peak_526 chr2R 14333914 14334143 + 126 NA promoter-TSS (FBgn0034350) protein_coding-promoter-TSS (FBgn0034350) -47 FBgn0050120 FBgn0050120 FBtr0299806 CG30120 protein_coding CTCF-S2-jox2017_R1_peak_993 chr3L 20573817 20574052 + 126 NA Intergenic Intergenic 39825 FBgn0001323 FBgn0001323 FBtr0078212 knrl protein_coding CTCF-S2-jox2017_R1_peak_1986 chrX 16640912 16641167 + 125 NA intron (FBgn0027528, intron 1 of 10) protein_coding-intron (FBgn0027528, intron 1 of 10) 4115 FBgn0052574 FBgn0052574 FBtr0074329 Twdlalpha protein_coding CTCF-S2-jox2017_R1_peak_884 chr3L 14353330 14353686 + 125 NA intron (FBgn0001085, intron 4 of 4) protein_coding-intron (FBgn0001085, intron 4 of 4) 9299 FBgn0036421 FBgn0036421 FBtr0113170 CG13481 protein_coding CTCF-S2-jox2017_R1_peak_1413 chr3R 24370470 24371116 + 125 NA promoter-TSS (FBgn0039588) protein_coding-promoter-TSS (FBgn0039588) -269 FBgn0039588 FBgn0039588 FBtr0085293 CG12413 protein_coding CTCF-S2-jox2017_R1_peak_365 chr2R 4281851 4282109 + 124 NA intron (FBgn0261588, intron 7 of 10) protein_coding-intron (FBgn0261588, intron 6 of 9) 17248 FBgn0033289 FBgn0033289 FBtr0088764 CG2121 protein_coding CTCF-S2-jox2017_R1_peak_385 chr2R 5698174 5698484 + 124 NA TTS (FBgn0033446) protein_coding-TTS (FBgn0033446) 1950 FBgn0033446 FBgn0033446 FBtr0088494 CG1648 protein_coding CTCF-S2-jox2017_R1_peak_670 chr3L 2237173 2237489 + 124 NA promoter-TSS (FBgn0040507) protein_coding-promoter-TSS (FBgn0040507) -255 FBgn0035318 FBgn0035318 FBtr0072909 CG9018 protein_coding CTCF-S2-jox2017_R1_peak_298 chr2L 20488220 20488416 + 122 NA TTS (FBgn0262455) pre_miRNA-TTS (FBgn0262455) 822 FBgn0262455 FBgn0262455 FBtr0304488 mir-1 pre_miRNA CTCF-S2-jox2017_R1_peak_58 chr2L 4345751 4346057 + 122 NA TTS (FBgn0020762) protein_coding-TTS (FBgn0020762) 2168 FBgn0262375 FBgn0262375 FBtr0304206 mir-1005 pre_miRNA CTCF-S2-jox2017_R1_peak_376 chr2R 4954836 4955071 + 122 NA Intergenic Intergenic -1653 FBgn0011746 FBgn0011746 FBtr0300501 ana protein_coding CTCF-S2-jox2017_R1_peak_810 chr3L 10239495 10239789 + 122 NA Intergenic Intergenic -1836 FBgn0036078 FBgn0036078 FBtr0076300 Or67c protein_coding CTCF-S2-jox2017_R1_peak_1587 chrUextra 12442315 12442705 + 122 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_863 chr3L 12895828 12896065 + 121 NA promoter-TSS (FBgn0036324) protein_coding-promoter-TSS (FBgn0036324) -272 FBgn0036324 FBgn0036324 FBtr0113169 CG12520 protein_coding CTCF-S2-jox2017_R1_peak_223 chr2L 14588623 14589162 + 121 NA promoter-TSS (FBgn0261566) protein_coding-promoter-TSS (FBgn0261566) -658 FBgn0261566 FBgn0261566 FBtr0302802 CG42680 protein_coding CTCF-S2-jox2017_R1_peak_146 chr2L 9731469 9731686 + 121 NA TTS (FBgn0032139) protein_coding-TTS (FBgn0032139) 1637 FBgn0032139 FBgn0032139 FBtr0079863 CG13116 protein_coding CTCF-S2-jox2017_R1_peak_1350 chr3R 19448659 19448907 + 121 NA intron (FBgn0051145, intron 8 of 15) protein_coding-intron (FBgn0051145, intron 5 of 13) -17574 FBgn0039094 FBgn0039094 FBtr0084481 CG10184 protein_coding CTCF-S2-jox2017_R1_peak_1295 chr3R 15884667 15885003 + 120 NA exon (FBgn0038772, exon 3 of 3) protein_coding-exon (FBgn0038772, exon 3 of 3) 1363 FBgn0038772 FBgn0038772 FBtr0083835 CG4973 protein_coding CTCF-S2-jox2017_R1_peak_1296 chr3R 15892174 15892611 + 119 NA Intergenic Intergenic 8920 FBgn0038772 FBgn0038772 FBtr0083835 CG4973 protein_coding CTCF-S2-jox2017_R1_peak_936 chr3L 17572423 17572711 + 119 NA intron (FBgn0000567, intron 5 of 7) protein_coding-intron (FBgn0000567, intron 5 of 7) -13305 FBgn0086080 FBgn0086080 FBtr0114356 snoRNA:Me28S-A576 snoRNA CTCF-S2-jox2017_R1_peak_1984 chrX 16527704 16527965 + 119 NA intron (FBgn0026181, intron 2 of 10) protein_coding-intron (FBgn0026181, intron 2 of 10) -1566 FBgn0030764 FBgn0030764 FBtr0074287 CG9777 protein_coding CTCF-S2-jox2017_R1_peak_755 chr3L 6899463 6900143 + 119 NA Intergenic Intergenic 7261 FBgn0041194 FBgn0041194 FBtr0076946 Prat2 protein_coding CTCF-S2-jox2017_R1_peak_976 chr3L 19997744 19998172 + 118 NA TTS (FBgn0036929) protein_coding-TTS (FBgn0036929) -1726 FBgn0261574 FBgn0261574 FBtr0332722 kug protein_coding CTCF-S2-jox2017_R1_peak_1809 chrX 3347143 3347399 + 118 NA Intergenic Intergenic 7002 FBgn0029659 FBgn0029659 FBtr0331608 CG16782 protein_coding CTCF-S2-jox2017_R1_peak_1642 chrUextra 25557713 25557865 + 117 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_960 chr3L 18794458 18794785 + 117 NA promoter-TSS (FBgn0001078) protein_coding-promoter-TSS (FBgn0001078) 19154 FBgn0036814 FBgn0036814 FBtr0332801 CG14073 protein_coding CTCF-S2-jox2017_R1_peak_846 chr3L 11869292 11869510 + 117 NA Intergenic Intergenic -2814 FBgn0036218 FBgn0036218 FBtr0300724 CG14128 protein_coding CTCF-S2-jox2017_R1_peak_250 chr2L 17260711 17260953 + 115 NA promoter-TSS (FBgn0032629) protein_coding-promoter-TSS (FBgn0032629) -100 FBgn0032629 FBgn0032629 FBtr0080972 beat-IIIc protein_coding CTCF-S2-jox2017_R1_peak_1079 chr3R 1126352 1126659 + 115 NA exon (FBgn0037310, exon 2 of 3) protein_coding-exon (FBgn0037310, exon 2 of 3) 638 FBgn0037310 FBgn0037310 FBtr0078784 Tim17b1 protein_coding CTCF-S2-jox2017_R1_peak_794 chr3L 9349266 9349487 + 115 NA TTS (FBgn0052040) protein_coding-TTS (FBgn0052040) 1607 FBgn0035978 FBgn0035978 FBtr0301698 UGP protein_coding CTCF-S2-jox2017_R1_peak_556 chr2R 16490760 16490961 + 114 NA intron (FBgn0015907, intron 1 of 2) protein_coding-intron (FBgn0015907, intron 6 of 8) -2726 FBgn0262370 FBgn0262370 FBtr0304181 mir-7 pre_miRNA CTCF-S2-jox2017_R1_peak_28 chr2L 1884314 1884763 + 114 NA promoter-TSS (FBgn0031374) protein_coding-promoter-TSS (FBgn0031374) -84 FBgn0031374 FBgn0031374 FBtr0110882 CG7337 protein_coding CTCF-S2-jox2017_R1_peak_1370 chr3R 20525050 20525626 + 114 NA intron (FBgn0003429, intron 15 of 22) protein_coding-intron (FBgn0003429, intron 16 of 24) -15168 FBgn0039217 FBgn0039217 FBtr0084687 CG13627 protein_coding CTCF-S2-jox2017_R1_peak_715 chr3L 4690722 4690940 + 114 NA promoter-TSS (FBgn0035568) protein_coding-promoter-TSS (FBgn0035568) -761 FBgn0035568 FBgn0035568 FBtr0073366 CG18418 protein_coding CTCF-S2-jox2017_R1_peak_262 chr2L 18347987 18348277 + 113 NA intron (FBgn0000636, intron 1 of 6) protein_coding-intron (FBgn0000636, intron 1 of 7) 10894 FBgn0011559 FBgn0011559 FBtr0081054 Acp36DE protein_coding CTCF-S2-jox2017_R1_peak_1911 chrX 11047961 11048582 + 113 NA promoter-TSS (FBgn0030276) protein_coding-promoter-TSS (FBgn0030276) -436 FBgn0261277 FBgn0261277 FBtr0331743 rtv protein_coding CTCF-S2-jox2017_R1_peak_2022 chrX 18935253 18935494 + 113 NA Intergenic Intergenic -9133 FBgn0085358 FBgn0085358 FBtr0112531 Diedel3 protein_coding CTCF-S2-jox2017_R1_peak_883 chr3L 14349630 14349888 + 113 NA intron (FBgn0001085, intron 4 of 4) protein_coding-intron (FBgn0001085, intron 4 of 4) 13048 FBgn0036421 FBgn0036421 FBtr0113170 CG13481 protein_coding CTCF-S2-jox2017_R1_peak_1980 chrX 16138775 16139129 + 113 NA Intergenic Intergenic 9198 FBgn0003933 FBgn0003933 FBtr0074249 snRNA:U5:14B snRNA CTCF-S2-jox2017_R1_peak_809 chr3L 10218368 10218709 + 112 NA promoter-TSS (FBgn0052056) protein_coding-promoter-TSS (FBgn0052056) -2178 FBgn0052056 FBgn0052056 FBtr0076303 scramb1 protein_coding CTCF-S2-jox2017_R1_peak_917 chr3L 16405445 16405698 + 111 NA promoter-TSS (FBgn0028399) protein_coding-promoter-TSS (FBgn0028399) -251 FBgn0028399 FBgn0028399 FBtr0331174 TMS1 protein_coding CTCF-S2-jox2017_R1_peak_1788 chrX 1899933 1900168 + 111 NA TTS (FBgn0264562) protein_coding-TTS (FBgn0264562) 3347 FBgn0023545 FBgn0023545 FBtr0070347 CG4406 protein_coding CTCF-S2-jox2017_R1_peak_217 chr2L 14160898 14162168 + 111 NA TTS (FBgn0028906) protein_coding-TTS (FBgn0028906) 1689 FBgn0263037 FBgn0263037 FBtr0306928 CG43332 protein_coding CTCF-S2-jox2017_R1_peak_954 chr3L 18398799 18399007 + 110 NA Intergenic Intergenic -7368 FBgn0011706 FBgn0011706 FBtr0075120 rpr protein_coding CTCF-S2-jox2017_R1_peak_601 chr2R 19145823 19146171 + 109 NA Intergenic Intergenic 7060 FBgn0034838 FBgn0034838 FBtr0072048 CG12782 protein_coding CTCF-S2-jox2017_R1_peak_1293 chr3R 15603902 15604115 + 109 NA promoter-TSS (FBgn0038732) protein_coding-promoter-TSS (FBgn0038732) -480 FBgn0038732 FBgn0038732 FBtr0083789 CG11391 protein_coding CTCF-S2-jox2017_R1_peak_205 chr2L 13322046 13322302 + 108 NA intron (FBgn0264308, intron 1 of 5) protein_coding-intron (FBgn0264308, intron 1 of 5) 8947 FBgn0264308 FBgn0264308 FBtr0331504 CG43778 protein_coding CTCF-S2-jox2017_R1_peak_1799 chrX 2843290 2843472 + 108 NA TTS (FBgn0029648) protein_coding-TTS (FBgn0029648) 1314 FBgn0029648 FBgn0029648 FBtr0070558 CG3603 protein_coding CTCF-S2-jox2017_R1_peak_514 chr2R 13029704 13029926 + 107 NA Intergenic Intergenic 1383 FBgn0065048 FBgn0065048 FBtr0091925 snoRNA:U3:54Aa snoRNA CTCF-S2-jox2017_R1_peak_1816 chrX 3638500 3638730 + 107 NA intron (FBgn0086899, intron 1 of 7) protein_coding-intron (FBgn0086899, intron 1 of 7) -24950 FBgn0015286 FBgn0015286 FBtr0070584 Rala protein_coding CTCF-S2-jox2017_R1_peak_847 chr3L 11886025 11886228 + 106 NA Intergenic Intergenic -4045 FBgn0036220 FBgn0036220 FBtr0302207 CG5897 protein_coding CTCF-S2-jox2017_R1_peak_388 chr2R 5911381 5911639 + 106 NA intron (FBgn0022382, intron 2 of 9) protein_coding-intron (FBgn0022382, intron 2 of 9) 2037 FBgn0022382 FBgn0022382 FBtr0112902 Pka-R2 protein_coding CTCF-S2-jox2017_R1_peak_1550 chrUextra 3080783 3081242 + 106 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_88 chr2L 6356779 6357262 + 106 NA TTS (FBgn0031803) protein_coding-TTS (FBgn0031803) 1215 FBgn0031804 FBgn0031804 FBtr0079280 CG9500 protein_coding CTCF-S2-jox2017_R1_peak_1291 chr3R 15591760 15592203 + 105 NA intron (FBgn0024963, intron 10 of 12) protein_coding-intron (FBgn0024963, intron 10 of 11) 6966 FBgn0038730 FBgn0038730 FBtr0083798 CG6300 protein_coding CTCF-S2-jox2017_R1_peak_1654 chrUextra 26582211 26582476 + 105 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_278 chr2L 19363664 19363918 + 105 NA promoter-TSS (FBgn0032770) protein_coding-promoter-TSS (FBgn0032770) -567 FBgn0024245 FBgn0024245 FBtr0081224 dnt protein_coding CTCF-S2-jox2017_R1_peak_242 chr2L 16743034 16743288 + 104 NA promoter-TSS (FBgn0032600) protein_coding-promoter-TSS (FBgn0032600) -65 FBgn0261068 FBgn0261068 FBtr0308804 LSm7 protein_coding CTCF-S2-jox2017_R1_peak_1814 chrX 3635130 3635418 + 104 NA intron (FBgn0086899, intron 1 of 7) protein_coding-intron (FBgn0086899, intron 1 of 7) -21609 FBgn0015286 FBgn0015286 FBtr0070584 Rala protein_coding CTCF-S2-jox2017_R1_peak_2048 chrX 21195267 21195494 + 104 NA promoter-TSS (FBgn0029067) protein_coding-promoter-TSS (FBgn0029067) 286 FBgn0031174 FBgn0031174 FBtr0077191 CG1486 protein_coding CTCF-S2-jox2017_R1_peak_1323 chr3R 17234192 17234401 + 104 NA promoter-TSS (FBgn0051438) protein_coding-promoter-TSS (FBgn0051438) -549 FBgn0051438 FBgn0051438 FBtr0084090 CheB93b protein_coding CTCF-S2-jox2017_R1_peak_805 chr3L 10071770 10072000 + 104 NA intron (FBgn0040823, intron 6 of 6) protein_coding-intron (FBgn0040823, intron 6 of 6) 10615 FBgn0036066 FBgn0036066 FBtr0076316 CG14160 protein_coding CTCF-S2-jox2017_R1_peak_1429 chr3R 25541780 25542143 + 103 NA promoter-TSS (FBgn0250832) protein_coding-promoter-TSS (FBgn0250832) 657 FBgn0039685 FBgn0039685 FBtr0085462 Obp99b protein_coding CTCF-S2-jox2017_R1_peak_84 chr2L 6221100 6221290 + 103 NA Intergenic Intergenic -3855 FBgn0026755 FBgn0026755 FBtr0079242 Ugt37b1 protein_coding CTCF-S2-jox2017_R1_peak_1240 chr3R 12660414 12660654 + 103 NA intron (FBgn0263610, intron 6 of 7) ncRNA-intron (FBgn0263610, intron 5 of 6) -4767 FBgn0000014 FBgn0000014 FBtr0083388 abd-A protein_coding CTCF-S2-jox2017_R1_peak_1324 chr3R 17307645 17307977 + 103 NA promoter-TSS (FBgn0038889) protein_coding-promoter-TSS (FBgn0038889) -236 FBgn0038889 FBgn0038889 FBtr0084109 CG7922 protein_coding CTCF-S2-jox2017_R1_peak_1170 chr3R 7069867 7070117 + 103 NA promoter-TSS (FBgn0037891) protein_coding-promoter-TSS (FBgn0037891) -14 FBgn0037891 FBgn0037891 FBtr0082358 CG5214 protein_coding CTCF-S2-jox2017_R1_peak_947 chr3L 18076573 18076793 + 103 NA intron (FBgn0262898, intron 2 of 2) protein_coding-intron (FBgn0262898, intron 2 of 2) 1727 FBgn0262898 FBgn0262898 FBtr0306318 CG43253 protein_coding CTCF-S2-jox2017_R1_peak_570 chr2R 17125588 17125965 + 102 NA intron (FBgn0034606, intron 2 of 7) protein_coding-intron (FBgn0034606, intron 2 of 7) 12879 FBgn0034606 FBgn0034606 FBtr0071623 ASPP protein_coding CTCF-S2-jox2017_R1_peak_1971 chrX 15488567 15488809 + 102 NA Intergenic Intergenic -3727 FBgn0030662 FBgn0030662 FBtr0074064 CG9220 protein_coding CTCF-S2-jox2017_R1_peak_644 chr2RHet 3065513 3065809 + 101 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1601 chrUextra 15572689 15572951 + 101 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1152 chr3R 6029377 6029577 + 101 NA TTS (FBgn0025879) protein_coding-TTS (FBgn0025879) 9249 FBgn0025879 FBgn0025879 FBtr0082245 Timp protein_coding CTCF-S2-jox2017_R1_peak_572 chr2R 17139124 17139356 + 100 NA promoter-TSS (FBgn0034606) protein_coding-promoter-TSS (FBgn0034606) -585 FBgn0034606 FBgn0034606 FBtr0071623 ASPP protein_coding CTCF-S2-jox2017_R1_peak_1904 chrX 10624482 10624644 + 99 NA intron (FBgn0052676, intron 1 of 3) protein_coding-intron (FBgn0052676, intron 1 of 3) -13972 FBgn0003204 FBgn0003204 FBtr0071496 ras protein_coding CTCF-S2-jox2017_R1_peak_72 chr2L 5036131 5036450 + 99 NA intron (FBgn0000299, intron 8 of 8) protein_coding-intron (FBgn0000299, intron 8 of 8) -1763 FBgn0260451 FBgn0260451 FBtr0110984 CG14042 protein_coding CTCF-S2-jox2017_R1_peak_1963 chrX 14975150 14975392 + 99 NA promoter-TSS (FBgn0053177) protein_coding-promoter-TSS (FBgn0053177) -311 FBgn0053177 FBgn0053177 FBtr0073962 CG33177 protein_coding CTCF-S2-jox2017_R1_peak_1393 chr3R 22258321 22258655 + 99 NA Intergenic Intergenic 4176 FBgn0263382 FBgn0263382 FBtr0309068 CR43434 ncRNA CTCF-S2-jox2017_R1_peak_1977 chrX 15999855 16000054 + 98 NA Intergenic Intergenic -1009 FBgn0259699 FBgn0259699 FBtr0299953 CG42353 protein_coding CTCF-S2-jox2017_R1_peak_1995 chrX 17614366 17614839 + 98 NA intron (FBgn0261570, intron 1 of 9) protein_coding-intron (FBgn0261570, intron 1 of 7) 10424 FBgn0261570 FBgn0261570 FBtr0302833 CG42684 protein_coding CTCF-S2-jox2017_R1_peak_1398 chr3R 22692411 22692623 + 98 NA promoter-TSS (FBgn0001197) protein_coding-promoter-TSS (FBgn0001197) -86 FBgn0027889 FBgn0027889 FBtr0085096 ball protein_coding CTCF-S2-jox2017_R1_peak_1005 chr3L 21278741 21278926 + 98 NA promoter-TSS (FBgn0259785) protein_coding-promoter-TSS (FBgn0259785) -297 FBgn0037065 FBgn0037065 FBtr0078410 CG12974 protein_coding CTCF-S2-jox2017_R1_peak_1800 chrX 2843768 2844045 + 98 NA TTS (FBgn0029648) protein_coding-TTS (FBgn0029648) 1839 FBgn0029648 FBgn0029648 FBtr0070558 CG3603 protein_coding CTCF-S2-jox2017_R1_peak_1581 chrUextra 10241370 10241731 + 97 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_419 chr2R 7297611 7297839 + 97 NA promoter-TSS (FBgn0050026) protein_coding-promoter-TSS (FBgn0050026) 218 FBgn0054054 FBgn0054054 FBtr0100109 CG34054 protein_coding CTCF-S2-jox2017_R1_peak_1420 chr3R 24913090 24913487 + 96 NA promoter-TSS (FBgn0039633) protein_coding-promoter-TSS (FBgn0039633) 23738 FBgn0039633 FBgn0039633 FBtr0330300 CG11873 protein_coding CTCF-S2-jox2017_R1_peak_1423 chr3R 25138923 25139164 + 95 NA Intergenic Intergenic 6293 FBgn0015622 FBgn0015622 FBtr0110909 Cnx99A protein_coding CTCF-S2-jox2017_R1_peak_237 chr2L 15949566 15949779 + 95 NA intron (FBgn0028645, intron 1 of 6) protein_coding-intron (FBgn0028645, intron 1 of 6) -8186 FBgn0028856 FBgn0028856 FBtr0300614 CG18063 protein_coding CTCF-S2-jox2017_R1_peak_1924 chrX 12434849 12435031 + 95 NA intron (FBgn0264542, intron 4 of 10) protein_coding-intron (FBgn0264542, intron 4 of 10) 6056 FBgn0264542 FBgn0264542 FBtr0333155 CG43921 protein_coding CTCF-S2-jox2017_R1_peak_1147 chr3R 5902477 5902690 + 94 NA Intergenic Intergenic -1488 FBgn0037786 FBgn0037786 FBtr0309853 CG5361 protein_coding CTCF-S2-jox2017_R1_peak_1999 chrX 17715636 17715866 + 94 NA exon (FBgn0030869, exon 9 of 9) protein_coding-exon (FBgn0030869, exon 9 of 9) -2033 FBgn0030868 FBgn0030868 FBtr0074474 CG12986 protein_coding CTCF-S2-jox2017_R1_peak_337 chr2R 2148822 2149129 + 94 NA Intergenic Intergenic 15934 FBgn0033075 FBgn0033075 FBtr0114492 Pld protein_coding CTCF-S2-jox2017_R1_peak_190 chr2L 12373654 12374034 + 94 NA exon (FBgn0262475, exon 2 of 7) protein_coding-exon (FBgn0262475, exon 2 of 7) 17403 FBgn0032424 FBgn0032424 FBtr0080354 CG17010 protein_coding CTCF-S2-jox2017_R1_peak_127 chr2L 8485533 8485782 + 94 NA promoter-TSS (FBgn0263489) ncRNA-promoter-TSS (FBgn0263489) -68 FBgn0263489 FBgn0263489 FBtr0309788 unsRNA:d-a ncRNA CTCF-S2-jox2017_R1_peak_83 chr2L 6173038 6173259 + 93 NA Intergenic Intergenic -5985 FBgn0085409 FBgn0085409 FBtr0112617 CG34380 protein_coding CTCF-S2-jox2017_R1_peak_869 chr3L 13383069 13383266 + 93 NA promoter-TSS (FBgn0036354) protein_coding-promoter-TSS (FBgn0036354) -61 FBgn0036354 FBgn0036354 FBtr0321318 Poc1 protein_coding CTCF-S2-jox2017_R1_peak_1178 chr3R 7369991 7370261 + 92 NA Intergenic Intergenic -7509 FBgn0053512 FBgn0053512 FBtr0300492 dpr4 protein_coding CTCF-S2-jox2017_R1_peak_264 chr2L 18441317 18441546 + 92 NA TTS (FBgn0261597) protein_coding-TTS (FBgn0261597) 1797 FBgn0261597 FBgn0261597 FBtr0081090 RpS26 protein_coding CTCF-S2-jox2017_R1_peak_1244 chr3R 12708210 12708659 + 92 NA intron (FBgn0263610, intron 3 of 7) ncRNA-intron (FBgn0263610, intron 2 of 6) -9698 FBgn0263595 FBgn0263595 FBtr0309896 CR43617 ncRNA CTCF-S2-jox2017_R1_peak_1493 chr4 522036 522264 + 91 NA promoter-TSS (FBgn0004607) protein_coding-promoter-TSS (FBgn0004607) -286 FBgn0004607 FBgn0004607 FBtr0332913 zfh2 protein_coding CTCF-S2-jox2017_R1_peak_1395 chr3R 22355367 22355606 + 91 NA intron (FBgn0039431, intron 2 of 10) protein_coding-intron (FBgn0039431, intron 2 of 10) 5453 FBgn0039431 FBgn0039431 FBtr0302210 CG6490 protein_coding CTCF-S2-jox2017_R1_peak_1004 chr3L 21195672 21195876 + 90 NA promoter-TSS (FBgn0037057) protein_coding-promoter-TSS (FBgn0037057) 208 FBgn0053054 FBgn0053054 FBtr0078316 CG33054 protein_coding CTCF-S2-jox2017_R1_peak_1558 chrUextra 5832187 5832481 + 90 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1117 chr3R 3891111 3891474 + 90 NA intron (FBgn0037546, intron 1 of 3) protein_coding-intron (FBgn0037546, intron 1 of 3) 6286 FBgn0037546 FBgn0037546 FBtr0081789 CG7918 protein_coding CTCF-S2-jox2017_R1_peak_897 chr3L 15041312 15041585 + 90 NA TTS (FBgn0263761) protein_coding-TTS (FBgn0263761) 1147 FBgn0263761 FBgn0263761 FBtr0310458 CG43678 protein_coding CTCF-S2-jox2017_R1_peak_780 chr3L 8711721 8711944 + 89 NA TTS (FBgn0011509) protein_coding-TTS (FBgn0011509) 1493 FBgn0011509 FBgn0011509 FBtr0076598 SrpRbeta protein_coding CTCF-S2-jox2017_R1_peak_1793 chrX 2550126 2550326 + 89 NA intron (FBgn0003371, intron 4 of 11) protein_coding-intron (FBgn0003371, intron 2 of 9) 13176 FBgn0003371 FBgn0003371 FBtr0112828 sgg protein_coding CTCF-S2-jox2017_R1_peak_445 chr2R 8634522 8634711 + 88 NA intron (FBgn0261545, intron 5 of 8) protein_coding-intron (FBgn0261545, intron 4 of 7) 5825 FBgn0033773 FBgn0033773 FBtr0087865 mos protein_coding CTCF-S2-jox2017_R1_peak_13 chr2L 541938 542317 + 88 NA TTS (FBgn0031260) protein_coding-TTS (FBgn0031260) 453 FBgn0010602 FBgn0010602 FBtr0310029 lwr protein_coding CTCF-S2-jox2017_R1_peak_209 chr2L 13500523 13500718 + 88 NA TTS (FBgn0263354) protein_coding-TTS (FBgn0263354) -27221 FBgn0053640 FBgn0053640 FBtr0332506 CG33640 protein_coding CTCF-S2-jox2017_R1_peak_444 chr2R 8553343 8553564 + 88 NA promoter-TSS (FBgn0261673) protein_coding-promoter-TSS (FBgn0261673) -151 FBgn0261673 FBgn0261673 FBtr0087868 nemy protein_coding CTCF-S2-jox2017_R1_peak_1886 chrX 9354978 9355219 + 88 NA intron (FBgn0261260, intron 2 of 2) protein_coding-intron (FBgn0261260, intron 2 of 14) 35123 FBgn0261260 FBgn0261260 FBtr0302154 mgl protein_coding CTCF-S2-jox2017_R1_peak_1473 chr3RHet 2136534 2136777 + 87 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1513 chrU 627588 627886 + 87 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_660 chr3L 976021 976170 + 87 NA intron (FBgn0264574, intron 8 of 14) protein_coding-intron (FBgn0264574, intron 2 of 10) 16435 FBgn0264574 FBgn0264574 FBtr0333507 Glut1 protein_coding CTCF-S2-jox2017_R1_peak_744 chr3L 6543252 6543451 + 87 NA promoter-TSS (FBgn0042185) protein_coding-promoter-TSS (FBgn0042185) -487 FBgn0042185 FBgn0042185 FBtr0076974 CG18769 protein_coding CTCF-S2-jox2017_R1_peak_1241 chr3R 12682798 12682999 + 87 NA promoter-TSS (FBgn0262290) pre_miRNA-promoter-TSS (FBgn0262290) 861 FBgn0262462 FBgn0262462 FBtr0304522 mir-iab-4 pre_miRNA CTCF-S2-jox2017_R1_peak_596 chr2R 18984534 18984831 + 86 NA Intergenic Intergenic -2897 FBgn0034821 FBgn0034821 FBtr0071979 CG9876 protein_coding CTCF-S2-jox2017_R1_peak_392 chr2R 5989267 5989455 + 86 NA intron (FBgn0004907, intron 1 of 6) protein_coding-intron (FBgn0004907, intron 1 of 6) -2259 FBgn0004907 FBgn0004907 FBtr0332917 14-3-3zeta protein_coding CTCF-S2-jox2017_R1_peak_3 chr2L 122371 122588 + 86 NA promoter-TSS (FBgn0031220) protein_coding-promoter-TSS (FBgn0031220) -1737 FBgn0031220 FBgn0031220 FBtr0330646 CG4822 protein_coding CTCF-S2-jox2017_R1_peak_1336 chr3R 18481646 18481815 + 86 NA intron (FBgn0261572, intron 2 of 5) protein_coding-intron (FBgn0261572, intron 2 of 5) -10753 FBgn0039000 FBgn0039000 FBtr0306108 CG6954 protein_coding CTCF-S2-jox2017_R1_peak_953 chr3L 18228615 18228821 + 86 NA Intergenic Intergenic -16470 FBgn0036783 FBgn0036783 FBtr0075129 CheA75a protein_coding CTCF-S2-jox2017_R1_peak_1075 chr3R 1042016 1042218 + 85 NA intron (FBgn0259212, intron 1 of 19) protein_coding-intron (FBgn0259212, intron 1 of 16) 1030 FBgn0259212 FBgn0259212 FBtr0299710 cno protein_coding CTCF-S2-jox2017_R1_peak_1621 chrUextra 22179036 22179184 + 85 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_207 chr2L 13445598 13445827 + 85 NA promoter-TSS (FBgn0032524) protein_coding-promoter-TSS (FBgn0032524) -61 FBgn0032524 FBgn0032524 FBtr0080519 CG9267 protein_coding CTCF-S2-jox2017_R1_peak_588 chr2R 18204483 18204997 + 85 NA promoter-TSS (FBgn0013272) protein_coding-promoter-TSS (FBgn0013272) -5668 FBgn0013272 FBgn0013272 FBtr0071816 Gp150 protein_coding CTCF-S2-jox2017_R1_peak_965 chr3L 18961694 18961948 + 84 NA Intergenic Intergenic -16240 FBgn0036835 FBgn0036835 FBtr0075024 CG14075 protein_coding CTCF-S2-jox2017_R1_peak_18 chr2L 819254 819455 + 84 NA promoter-TSS (FBgn0015621) protein_coding-promoter-TSS (FBgn0015621) 154 FBgn0031284 FBgn0031284 FBtr0078039 CG3876 protein_coding CTCF-S2-jox2017_R1_peak_1282 chr3R 14921928 14922517 + 84 NA promoter-TSS (FBgn0038679) protein_coding-promoter-TSS (FBgn0038679) 1508 FBgn0016120 FBgn0016120 FBtr0083728 ATPsyn-d protein_coding CTCF-S2-jox2017_R1_peak_974 chr3L 19509719 19509934 + 84 NA TTS (FBgn0036878) protein_coding-TTS (FBgn0036878) 1606 FBgn0036878 FBgn0036878 FBtr0074977 Cpr76Ba protein_coding CTCF-S2-jox2017_R1_peak_1710 chrUextra 28689421 28689566 + 84 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_144 chr2L 9721749 9721915 + 84 NA intron (FBgn0028704, intron 5 of 8) protein_coding-intron (FBgn0028704, intron 5 of 7) -8108 FBgn0032139 FBgn0032139 FBtr0079863 CG13116 protein_coding CTCF-S2-jox2017_R1_peak_673 chr3L 2466529 2466834 + 83 NA promoter-TSS (FBgn0035347) protein_coding-promoter-TSS (FBgn0035347) 8933 FBgn0035343 FBgn0035343 FBtr0072968 CG16762 protein_coding CTCF-S2-jox2017_R1_peak_776 chr3L 8442415 8442621 + 83 NA promoter-TSS (FBgn0010825) protein_coding-promoter-TSS (FBgn0010825) -41 FBgn0035896 FBgn0035896 FBtr0076659 CG6983 protein_coding CTCF-S2-jox2017_R1_peak_2056 chrX 22226624 22226851 + 83 NA exon (FBgn0000719, exon 3 of 3) protein_coding-exon (FBgn0000719, exon 3 of 3) -7498 FBgn0259677 FBgn0259677 FBtr0333177 CG42346 protein_coding CTCF-S2-jox2017_R1_peak_4 chr2L 247581 247800 + 82 NA intron (FBgn0086902, intron 1 of 16) protein_coding-intron (FBgn0086902, intron 1 of 17) 3133 FBgn0086902 FBgn0086902 FBtr0078145 kis protein_coding CTCF-S2-jox2017_R1_peak_1314 chr3R 16809940 16810166 + 82 NA intron (FBgn0013995, intron 1 of 10) protein_coding-intron (FBgn0013995, intron 1 of 8) 3605 FBgn0263400 FBgn0263400 FBtr0309177 CG43446 protein_coding CTCF-S2-jox2017_R1_peak_108 chr2L 7423534 7423704 + 82 NA promoter-TSS (FBgn0264439) ncRNA-promoter-TSS (FBgn0264439) -201 FBgn0264439 FBgn0264439 FBtr0332525 CR43857 ncRNA CTCF-S2-jox2017_R1_peak_1537 chrU 9142998 9143256 + 82 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_771 chr3L 7830906 7831139 + 82 NA intron (FBgn0016694, intron 1 of 5) protein_coding-intron (FBgn0016694, intron 1 of 4) -28097 FBgn0052369 FBgn0052369 FBtr0076783 CG32369 protein_coding CTCF-S2-jox2017_R1_peak_1688 chrUextra 28531104 28531252 + 81 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_398 chr2R 6283412 6283588 + 81 NA promoter-TSS (FBgn0261698) protein_coding-promoter-TSS (FBgn0261698) 11450 FBgn0033516 FBgn0033516 FBtr0088321 CG12898 protein_coding CTCF-S2-jox2017_R1_peak_1868 chrX 7487189 7487359 + 81 NA Intergenic Intergenic -7110 FBgn0029952 FBgn0029952 FBtr0305135 CG12689 protein_coding CTCF-S2-jox2017_R1_peak_297 chr2L 20464432 20464640 + 81 NA Intergenic Intergenic -1092 FBgn0032864 FBgn0032864 FBtr0332970 CG2493 protein_coding CTCF-S2-jox2017_R1_peak_373 chr2R 4879888 4880085 + 81 NA Intergenic Intergenic -6923 FBgn0033359 FBgn0033359 FBtr0273385 CG8213 protein_coding CTCF-S2-jox2017_R1_peak_314 chr2L 22182159 22182368 + 81 NA intron (FBgn0032981, intron 1 of 2) protein_coding-intron (FBgn0032981, intron 1 of 2) 6848 FBgn0032981 FBgn0032981 FBtr0304739 CG3635 protein_coding CTCF-S2-jox2017_R1_peak_1002 chr3L 21042864 21043097 + 80 NA intron (FBgn0026179, intron 1 of 5) protein_coding-intron (FBgn0026179, intron 1 of 5) 1654 FBgn0026179 FBgn0026179 FBtr0111038 siz protein_coding CTCF-S2-jox2017_R1_peak_554 chr2R 16218230 16218395 + 80 NA TTS (FBgn0034504) protein_coding-TTS (FBgn0034504) 3540 FBgn0034504 FBgn0034504 FBtr0086285 CG8929 protein_coding CTCF-S2-jox2017_R1_peak_148 chr2L 9759037 9759234 + 80 NA intron (FBgn0022720, intron 1 of 3) protein_coding-intron (FBgn0022720, intron 1 of 3) 797 FBgn0022720 FBgn0022720 FBtr0079865 zf30C protein_coding CTCF-S2-jox2017_R1_peak_1828 chrX 4593501 4593706 + 79 NA TTS (FBgn0011760) protein_coding-TTS (FBgn0011760) -2793 FBgn0028325 FBgn0028325 FBtr0070711 l(1)G0334 protein_coding CTCF-S2-jox2017_R1_peak_562 chr2R 16719907 16720101 + 79 NA promoter-TSS (FBgn0016984) protein_coding-promoter-TSS (FBgn0016984) -85 FBgn0016984 FBgn0016984 FBtr0071563 sktl protein_coding CTCF-S2-jox2017_R1_peak_1052 chr3LHet 2100871 2101077 + 79 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1636 chrUextra 24405958 24406217 + 79 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_896 chr3L 14935858 14936220 + 79 NA TTS (FBgn0040809) protein_coding-TTS (FBgn0040809) 1392 FBgn0040809 FBgn0040809 FBtr0075674 CG13465 protein_coding CTCF-S2-jox2017_R1_peak_1263 chr3R 13705380 13705583 + 79 NA intron (FBgn0053547, intron 20 of 25) protein_coding-intron (FBgn0053547, intron 22 of 26) -26705 FBgn0038558 FBgn0038558 FBtr0308497 CG12347 protein_coding CTCF-S2-jox2017_R1_peak_970 chr3L 19170941 19171440 + 79 NA intron (FBgn0016797, intron 4 of 5) protein_coding-intron (FBgn0016797, intron 5 of 6) -7442 FBgn0016797 FBgn0016797 FBtr0075029 fz2 protein_coding CTCF-S2-jox2017_R1_peak_515 chr2R 13101830 13102126 + 79 NA Intergenic Intergenic 9265 FBgn0262882 FBgn0262882 FBtr0306290 CG43237 protein_coding CTCF-S2-jox2017_R1_peak_437 chr2R 8180678 8180934 + 78 NA exon (FBgn0261611, exon 2 of 9) protein_coding-exon (FBgn0261611, exon 2 of 9) 2512 FBgn0261611 FBgn0261611 FBtr0332924 CG42700 protein_coding CTCF-S2-jox2017_R1_peak_1611 chrUextra 18286302 18286560 + 78 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1639 chrUextra 25124581 25124851 + 78 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1949 chrX 14479345 14479561 + 78 NA TTS (FBgn0030573) protein_coding-TTS (FBgn0030573) 1743 FBgn0030573 FBgn0030573 FBtr0073933 nmdyn-D6 protein_coding CTCF-S2-jox2017_R1_peak_1634 chrUextra 24282093 24282388 + 78 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1861 chrX 7056625 7056877 + 78 NA intron (FBgn0029939, intron 1 of 5) protein_coding-intron (FBgn0029939, intron 1 of 5) -12868 FBgn0047092 FBgn0047092 FBtr0071016 CR32730 ncRNA CTCF-S2-jox2017_R1_peak_1578 chrUextra 9848839 9849227 + 78 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1797 chrX 2763636 2763881 + 77 NA intron (FBgn0028369, intron 3 of 11) protein_coding-intron (FBgn0028369, intron 3 of 12) 3128 FBgn0040352 FBgn0040352 FBtr0070567 CG14416 protein_coding CTCF-S2-jox2017_R1_peak_1331 chr3R 17901516 17901732 + 77 NA intron (FBgn0264491, intron 8 of 8) protein_coding-intron (FBgn0264491, intron 8 of 8) -4480 FBgn0038929 FBgn0038929 FBtr0084179 CG13408 protein_coding CTCF-S2-jox2017_R1_peak_925 chr3L 16889467 16890059 + 77 NA intron (FBgn0261565, intron 2 of 8) protein_coding-intron (FBgn0261565, intron 3 of 9) 9557 FBgn0261565 FBgn0261565 FBtr0302784 Lmpt protein_coding CTCF-S2-jox2017_R1_peak_293 chr2L 20293974 20294217 + 77 NA promoter-TSS (FBgn0040996) protein_coding-promoter-TSS (FBgn0040996) -612 FBgn0040996 FBgn0040996 FBtr0081351 CG12617 protein_coding CTCF-S2-jox2017_R1_peak_1597 chrUextra 14301890 14302167 + 77 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_113 chr2L 7808958 7809189 + 77 NA intron (FBgn0031952, intron 1 of 6) protein_coding-intron (FBgn0031952, intron 1 of 6) 1624 FBgn0031952 FBgn0031952 FBtr0301331 cdc14 protein_coding CTCF-S2-jox2017_R1_peak_1740 chrUextra 28878756 28879018 + 77 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1771 chrX 678500 678719 + 76 NA promoter-TSS (FBgn0086368) protein_coding-promoter-TSS (FBgn0086368) -215 FBgn0086368 FBgn0086368 FBtr0070139 tw protein_coding CTCF-S2-jox2017_R1_peak_1217 chr3R 11263580 11264006 + 76 NA Intergenic Intergenic -1917 FBgn0000047 FBgn0000047 FBtr0083143 Act88F protein_coding CTCF-S2-jox2017_R1_peak_138 chr2L 9567401 9567709 + 76 NA promoter-TSS (FBgn0032129) protein_coding-promoter-TSS (FBgn0032129) -2762 FBgn0032130 FBgn0032130 FBtr0079835 CG3838 protein_coding CTCF-S2-jox2017_R1_peak_513 chr2R 13028899 13029343 + 76 NA promoter-TSS (FBgn0262567) protein_coding-promoter-TSS (FBgn0262567) -737 FBgn0262567 FBgn0262567 FBtr0304890 CG43107 protein_coding CTCF-S2-jox2017_R1_peak_752 chr3L 6745372 6745928 + 75 NA promoter-TSS (FBgn0035714) protein_coding-promoter-TSS (FBgn0035714) -264 FBgn0035713 FBgn0035713 FBtr0076951 CG10107 protein_coding CTCF-S2-jox2017_R1_peak_817 chr3L 10501188 10501357 + 75 NA intron (FBgn0052062, intron 2 of 13) protein_coding-intron (FBgn0052062, intron 2 of 16) -7831 FBgn0052062 FBgn0052062 FBtr0305094 A2bp1 protein_coding CTCF-S2-jox2017_R1_peak_1987 chrX 16861532 16861937 + 75 NA exon (FBgn0030809, exon 2 of 11) protein_coding-exon (FBgn0030809, exon 2 of 11) 948 FBgn0030809 FBgn0030809 FBtr0308839 CG9086 protein_coding CTCF-S2-jox2017_R1_peak_233 chr2L 15504654 15504845 + 75 NA exon (FBgn0002524, exon 4 of 4) protein_coding-exon (FBgn0002524, exon 4 of 4) 5639 FBgn0002524 FBgn0002524 FBtr0080738 lace protein_coding CTCF-S2-jox2017_R1_peak_1183 chr3R 8104956 8105133 + 75 NA intron (FBgn0003651, intron 1 of 4) protein_coding-intron (FBgn0003651, intron 1 of 4) -1830 FBgn0003651 FBgn0003651 FBtr0331183 svp protein_coding CTCF-S2-jox2017_R1_peak_1228 chr3R 12070247 12070444 + 75 NA intron (FBgn0040071, intron 1 of 1) protein_coding-intron (FBgn0040071, intron 1 of 1) 1804 FBgn0040071 FBgn0040071 FBtr0083258 tara protein_coding CTCF-S2-jox2017_R1_peak_1896 chrX 9903885 9904364 + 74 NA promoter-TSS (FBgn0030170) protein_coding-promoter-TSS (FBgn0030170) -412 FBgn0030170 FBgn0030170 FBtr0112971 CG2990 protein_coding CTCF-S2-jox2017_R1_peak_277 chr2L 19319224 19319642 + 74 NA Intergenic Intergenic 19127 FBgn0032769 FBgn0032769 FBtr0081196 CG10750 protein_coding CTCF-S2-jox2017_R1_peak_1934 chrX 13118986 13119210 + 74 NA exon (FBgn0004456, exon 3 of 9) protein_coding-exon (FBgn0004456, exon 3 of 9) 11501 FBgn0052639 FBgn0052639 FBtr0073734 CG32639 protein_coding CTCF-S2-jox2017_R1_peak_1981 chrX 16367970 16368172 + 74 NA intron (FBgn0264255, intron 27 of 30) protein_coding-intron (FBgn0264255, intron 27 of 30) 25361 FBgn0262734 FBgn0262734 FBtr0074281 Rbp2 protein_coding CTCF-S2-jox2017_R1_peak_2030 chrX 19791578 19791766 + 73 NA intron (FBgn0052529, intron 1 of 5) protein_coding-intron (FBgn0052529, intron 4 of 8) -7579 FBgn0086782 FBgn0086782 FBtr0074802 amn protein_coding CTCF-S2-jox2017_R1_peak_698 chr3L 3769156 3769454 + 73 NA exon (FBgn0052264, exon 3 of 12) protein_coding-exon (FBgn0052264, exon 3 of 12) -14104 FBgn0035458 FBgn0035458 FBtr0303094 CG10858 protein_coding CTCF-S2-jox2017_R1_peak_1613 chrUextra 19108654 19108920 + 73 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1050 chr3LHet 1843632 1843814 + 73 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_274 chr2L 19245906 19246110 + 72 NA Intergenic Intergenic 16885 FBgn0051797 FBgn0051797 FBtr0081227 CG31797 protein_coding CTCF-S2-jox2017_R1_peak_1281 chr3R 14866574 14866746 + 72 NA exon (FBgn0038676, exon 2 of 3) protein_coding-exon (FBgn0038676, exon 2 of 3) 7404 FBgn0038676 FBgn0038676 FBtr0273301 CG6026 protein_coding CTCF-S2-jox2017_R1_peak_1480 chr4 164515 164763 + 72 NA TTS (FBgn0052000) protein_coding-TTS (FBgn0052000) -6751 FBgn0052006 FBgn0052006 FBtr0089170 CG32006 protein_coding CTCF-S2-jox2017_R1_peak_1266 chr3R 13718510 13718715 + 72 NA intron (FBgn0053547, intron 8 of 24) protein_coding-intron (FBgn0053547, intron 9 of 26) -13574 FBgn0038558 FBgn0038558 FBtr0308497 CG12347 protein_coding CTCF-S2-jox2017_R1_peak_2001 chrX 17818656 17818809 + 72 NA TTS (FBgn0030884) protein_coding-TTS (FBgn0030884) 13236 FBgn0030884 FBgn0030884 FBtr0074505 CG6847 protein_coding CTCF-S2-jox2017_R1_peak_1623 chrUextra 22440652 22440906 + 71 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1680 chrUextra 28342775 28343039 + 71 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1508 chrU 221881 222047 + 71 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1064 chr3R 223237 223446 + 71 NA TTS (FBgn0086605) protein_coding-TTS (FBgn0086605) 268 FBgn0037242 FBgn0037242 FBtr0078950 CG9855 protein_coding CTCF-S2-jox2017_R1_peak_1094 chr3R 2275640 2275901 + 71 NA Intergenic Intergenic 6601 FBgn0037445 FBgn0037445 FBtr0330192 CG9727 protein_coding CTCF-S2-jox2017_R1_peak_1077 chr3R 1109052 1109233 + 71 NA promoter-TSS (FBgn0013576) protein_coding-promoter-TSS (FBgn0013576) -5585 FBgn0051538 FBgn0051538 FBtr0078819 CG31538 protein_coding CTCF-S2-jox2017_R1_peak_1926 chrX 12615617 12615832 + 70 NA intron (FBgn0264678, intron 1 of 1) protein_coding-intron (FBgn0263865, intron 2 of 9) -3231 FBgn0264678 FBgn0264678 FBtr0333775 CR43963 ncRNA CTCF-S2-jox2017_R1_peak_785 chr3L 9040396 9040628 + 70 NA promoter-TSS (FBgn0035957) protein_coding-promoter-TSS (FBgn0035957) -27 FBgn0035957 FBgn0035957 FBtr0076523 CG5144 protein_coding CTCF-S2-jox2017_R1_peak_820 chr3L 10786762 10786913 + 70 NA Intergenic Intergenic -7453 FBgn0036102 FBgn0036102 FBtr0076266 CG12523 protein_coding CTCF-S2-jox2017_R1_peak_1498 chr4 831163 831338 + 70 NA intron (FBgn0039938, intron 3 of 4) protein_coding-intron (FBgn0039938, intron 3 of 4) 11191 FBgn0039939 FBgn0039939 FBtr0089242 CG11231 protein_coding CTCF-S2-jox2017_R1_peak_1520 chrU 2149627 2149888 + 70 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1604 chrUextra 16632111 16632369 + 70 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_803 chr3L 9967367 9967569 + 69 NA promoter-TSS (FBgn0040823) protein_coding-promoter-TSS (FBgn0040823) -283 FBgn0040823 FBgn0040823 FBtr0076353 dpr6 protein_coding CTCF-S2-jox2017_R1_peak_370 chr2R 4543234 4543410 + 69 NA intron (FBgn0003892, intron 1 of 5) protein_coding-intron (FBgn0003892, intron 1 of 5) 6182 FBgn0003892 FBgn0003892 FBtr0089427 ptc protein_coding CTCF-S2-jox2017_R1_peak_867 chr3L 13264443 13264630 + 69 NA intron (FBgn0023095, intron 4 of 4) protein_coding-intron (FBgn0023095, intron 4 of 4) -8340 FBgn0052123 FBgn0052123 FBtr0075835 tRNA:CR32123:Psi pseudogene CTCF-S2-jox2017_R1_peak_73 chr2L 5036813 5036995 + 69 NA TTS (FBgn0000299) protein_coding-TTS (FBgn0000299) -1149 FBgn0260451 FBgn0260451 FBtr0110984 CG14042 protein_coding CTCF-S2-jox2017_R1_peak_1567 chrUextra 7349486 7349632 + 69 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1694 chrUextra 28583470 28583815 + 68 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1175 chr3R 7219648 7219886 + 68 NA exon (FBgn0004595, exon 8 of 8) protein_coding-exon (FBgn0004595, exon 8 of 8) -13852 FBgn0037892 FBgn0037892 FBtr0082384 mRpL40 protein_coding CTCF-S2-jox2017_R1_peak_2018 chrX 18682454 18682674 + 68 NA promoter-TSS (FBgn0004462) protein_coding-promoter-TSS (FBgn0004462) 65 FBgn0004462 FBgn0004462 FBtr0307198 Pk17E protein_coding CTCF-S2-jox2017_R1_peak_1985 chrX 16531272 16531633 + 68 NA promoter-TSS (FBgn0026181) protein_coding-promoter-TSS (FBgn0026181) 0 FBgn0026181 FBgn0026181 FBtr0074286 rok protein_coding CTCF-S2-jox2017_R1_peak_1479 chr4 110340 110988 + 68 NA intron (FBgn0085432, intron 8 of 11) protein_coding-intron (FBgn0085432, intron 9 of 12) 20377 FBgn0085432 FBgn0085432 FBtr0112657 pan protein_coding CTCF-S2-jox2017_R1_peak_553 chr2R 16193076 16193232 + 67 NA intron (FBgn0034500, intron 3 of 4) protein_coding-intron (FBgn0034500, intron 4 of 5) 2990 FBgn0034500 FBgn0034500 FBtr0086300 CG11200 protein_coding CTCF-S2-jox2017_R1_peak_261 chr2L 18294513 18294725 + 67 NA promoter-TSS (FBgn0032677) protein_coding-promoter-TSS (FBgn0032677) -285 FBgn0032677 FBgn0032677 FBtr0081050 CG5790 protein_coding CTCF-S2-jox2017_R1_peak_429 chr2R 7639718 7639882 + 67 NA Intergenic Intergenic -16158 FBgn0033650 FBgn0033650 FBtr0088029 CG13193 protein_coding CTCF-S2-jox2017_R1_peak_1373 chr3R 21019601 21019836 + 67 NA promoter-TSS (FBgn0083946) protein_coding-promoter-TSS (FBgn0083946) -220 FBgn0083946 FBgn0083946 FBtr0110797 lobo protein_coding CTCF-S2-jox2017_R1_peak_458 chr2R 9697248 9697401 + 67 NA intron (FBgn0261041, intron 5 of 21) protein_coding-intron (FBgn0261041, intron 5 of 20) 4345 FBgn0261041 FBgn0261041 FBtr0304695 stj protein_coding CTCF-S2-jox2017_R1_peak_1029 chr3L 24102577 24102732 + 67 NA intron (FBgn0011288, intron 2 of 6) protein_coding-intron (FBgn0011288, intron 2 of 7) 35325 FBgn0011288 FBgn0011288 FBtr0304626 Snap25 protein_coding CTCF-S2-jox2017_R1_peak_1846 chrX 5556084 5556268 + 67 NA exon (FBgn0259150, exon 2 of 7) protein_coding-exon (FBgn0259150, exon 2 of 7) 699 FBgn0259150 FBgn0259150 FBtr0331168 CG42265 protein_coding CTCF-S2-jox2017_R1_peak_1692 chrUextra 28575334 28575611 + 66 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_664 chr3L 1352215 1352479 + 66 NA TTS (FBgn0029514) protein_coding-TTS (FBgn0029514) 1231 FBgn0029514 FBgn0029514 FBtr0310160 CG9166 protein_coding CTCF-S2-jox2017_R1_peak_812 chr3L 10264797 10265219 + 66 NA Intergenic Intergenic -1296 FBgn0036080 FBgn0036080 FBtr0076297 Or67d protein_coding CTCF-S2-jox2017_R1_peak_1559 chrUextra 6346356 6346817 + 66 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1588 chrUextra 12698838 12699089 + 65 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_849 chr3L 12015104 12015257 + 65 NA intron (FBgn0041096, intron 4 of 6) protein_coding-intron (FBgn0041096, intron 4 of 7) -5721 FBgn0264726 FBgn0264726 FBtr0334107 CR43994 ncRNA CTCF-S2-jox2017_R1_peak_677 chr3L 2743840 2744008 + 65 NA intron (FBgn0052296, intron 1 of 4) protein_coding-intron (FBgn0052296, intron 1 of 4) 4174 FBgn0020509 FBgn0020509 FBtr0072943 Acp62F protein_coding CTCF-S2-jox2017_R1_peak_1629 chrUextra 23503056 23503201 + 65 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_65 chr2L 4643179 4643365 + 65 NA TTS (FBgn0083938) protein_coding-TTS (FBgn0083938) 300 FBgn0031617 FBgn0031617 FBtr0300354 CG15635 protein_coding CTCF-S2-jox2017_R1_peak_1106 chr3R 2926128 2926323 + 65 NA exon (FBgn0261238, exon 4 of 6) protein_coding-exon (FBgn0261238, exon 4 of 6) 6465 FBgn0040670 FBgn0040670 FBtr0081562 e(y)2b protein_coding CTCF-S2-jox2017_R1_peak_443 chr2R 8486034 8486243 + 65 NA intron (FBgn0027356, intron 1 of 8) protein_coding-intron (FBgn0027356, intron 1 of 9) -3138 FBgn0264510 FBgn0264510 FBtr0333104 CR43909 ncRNA CTCF-S2-jox2017_R1_peak_1839 chrX 5183572 5184018 + 65 NA Intergenic Intergenic -6332 FBgn0261803 FBgn0261803 FBtr0303279 CG42749 protein_coding CTCF-S2-jox2017_R1_peak_399 chr2R 6290396 6290557 + 65 NA intron (FBgn0261698, intron 2 of 27) protein_coding-intron (FBgn0261698, intron 2 of 27) 4474 FBgn0033516 FBgn0033516 FBtr0088321 CG12898 protein_coding CTCF-S2-jox2017_R1_peak_1598 chrUextra 14369218 14369474 + 65 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_126 chr2L 8428030 8428203 + 64 NA exon (FBgn0027932, exon 4 of 5) protein_coding-exon (FBgn0027932, exon 4 of 5) 5482 FBgn0001137 FBgn0001137 FBtr0079708 grk protein_coding CTCF-S2-jox2017_R1_peak_1103 chr3R 2801220 2801538 + 64 NA intron (FBgn0260642, intron 1 of 6) protein_coding-intron (FBgn0260642, intron 1 of 6) -42817 FBgn0260642 FBgn0260642 FBtr0081646 Antp protein_coding CTCF-S2-jox2017_R1_peak_1219 chr3R 11319061 11319223 + 64 NA TTS (FBgn0038344) protein_coding-TTS (FBgn0038344) -1182 FBgn0038345 FBgn0038345 FBtr0083148 CG5213 protein_coding CTCF-S2-jox2017_R1_peak_842 chr3L 11516489 11516686 + 64 NA promoter-TSS (FBgn0036170) protein_coding-promoter-TSS (FBgn0036170) -774 FBgn0036170 FBgn0036170 FBtr0331531 CG11714 protein_coding CTCF-S2-jox2017_R1_peak_1831 chrX 4957494 4957925 + 64 NA promoter-TSS (FBgn0003028) protein_coding-promoter-TSS (FBgn0003028) 15379 FBgn0003028 FBgn0003028 FBtr0100408 ovo protein_coding CTCF-S2-jox2017_R1_peak_1877 chrX 8502340 8502487 + 64 NA Intergenic Intergenic -2078 FBgn0030054 FBgn0030054 FBtr0071228 Caf1-180 protein_coding CTCF-S2-jox2017_R1_peak_829 chr3L 11033893 11034049 + 64 NA promoter-TSS (FBgn0263776) protein_coding-promoter-TSS (FBgn0263776) 10500 FBgn0263776 FBgn0263776 FBtr0310568 CG43693 protein_coding CTCF-S2-jox2017_R1_peak_814 chr3L 10278101 10278262 + 64 NA Intergenic Intergenic 11877 FBgn0036080 FBgn0036080 FBtr0076297 Or67d protein_coding CTCF-S2-jox2017_R1_peak_697 chr3L 3767851 3768142 + 64 NA intron (FBgn0052264, intron 3 of 9) protein_coding-intron (FBgn0052264, intron 4 of 11) -12795 FBgn0035458 FBgn0035458 FBtr0303094 CG10858 protein_coding CTCF-S2-jox2017_R1_peak_1199 chr3R 9465854 9466000 + 64 NA exon (FBgn0263396, exon 5 of 5) protein_coding-exon (FBgn0263396, exon 5 of 5) 6099 FBgn0263396 FBgn0263396 FBtr0082854 sqd protein_coding CTCF-S2-jox2017_R1_peak_600 chr2R 19122637 19122818 + 64 NA Intergenic Intergenic 2578 FBgn0034835 FBgn0034835 FBtr0071999 CG3092 protein_coding CTCF-S2-jox2017_R1_peak_80 chr2L 5725775 5725995 + 64 NA TTS (FBgn0031733) protein_coding-TTS (FBgn0031733) 1229 FBgn0031736 FBgn0031736 FBtr0079135 CG11030 protein_coding CTCF-S2-jox2017_R1_peak_1582 chrUextra 10890886 10891132 + 63 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1595 chrUextra 13674384 13674689 + 63 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1858 chrX 6899560 6899945 + 63 NA intron (FBgn0027106, intron 2 of 4) protein_coding-intron (FBgn0027106, intron 2 of 4) 5426 FBgn0000330 FBgn0000330 FBtr0071033 cm protein_coding CTCF-S2-jox2017_R1_peak_966 chr3L 19056145 19056306 + 63 NA promoter-TSS (FBgn0036843) protein_coding-promoter-TSS (FBgn0036843) -40 FBgn0036843 FBgn0036843 FBtr0075025 CG6812 protein_coding CTCF-S2-jox2017_R1_peak_1888 chrX 9444972 9445205 + 63 NA TTS (FBgn0028327) protein_coding-TTS (FBgn0028327) 174 FBgn0052700 FBgn0052700 FBtr0071374 CG32700 protein_coding CTCF-S2-jox2017_R1_peak_33 chr2L 2226796 2226974 + 63 NA promoter-TSS (FBgn0031403) protein_coding-promoter-TSS (FBgn0031403) 362 FBgn0010704 FBgn0010704 FBtr0100674 l(2)s5379 protein_coding CTCF-S2-jox2017_R1_peak_738 chr3L 5845113 5845313 + 63 NA Intergenic Intergenic -6449 FBgn0003984 FBgn0003984 FBtr0077082 vn protein_coding CTCF-S2-jox2017_R1_peak_1684 chrUextra 28422828 28423163 + 63 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1863 chrX 7136044 7136543 + 63 NA TTS (FBgn0029939) protein_coding-TTS (FBgn0029939) -24644 FBgn0029940 FBgn0029940 FBtr0071046 CG1958 protein_coding CTCF-S2-jox2017_R1_peak_973 chr3L 19402238 19402406 + 63 NA intron (FBgn0052206, intron 1 of 13) protein_coding-intron (FBgn0052206, intron 1 of 13) 3683 FBgn0264697 FBgn0264697 FBtr0333868 CR43966 ncRNA CTCF-S2-jox2017_R1_peak_470 chr2R 10186446 10186596 + 63 NA TTS (FBgn0263397) protein_coding-TTS (FBgn0263397) 3337 FBgn0033921 FBgn0033921 FBtr0087562 tej protein_coding CTCF-S2-jox2017_R1_peak_533 chr2R 14526735 14526923 + 63 NA promoter-TSS (FBgn0050227) tRNA-promoter-TSS (FBgn0050227) -233 FBgn0050227 FBgn0050227 FBtr0086603 tRNA:CR30227 tRNA CTCF-S2-jox2017_R1_peak_1775 chrX 1130700 1130927 + 62 NA promoter-TSS (FBgn0261444) protein_coding-promoter-TSS (FBgn0261444) -96 FBgn0261444 FBgn0261444 FBtr0330205 CG3638 protein_coding CTCF-S2-jox2017_R1_peak_450 chr2R 9227478 9227920 + 62 NA Intergenic Intergenic -10753 FBgn0262391 FBgn0262391 FBtr0304273 mir-184 pre_miRNA CTCF-S2-jox2017_R1_peak_1154 chr3R 6093840 6094046 + 62 NA intron (FBgn0262617, intron 1 of 13) protein_coding-intron (FBgn0262617, intron 1 of 11) 6109 FBgn0040078 FBgn0040078 FBtr0082226 pont protein_coding CTCF-S2-jox2017_R1_peak_783 chr3L 8938194 8938375 + 62 NA promoter-TSS (FBgn0264307) protein_coding-promoter-TSS (FBgn0264307) 8050 FBgn0264307 FBgn0264307 FBtr0331511 orb2 protein_coding CTCF-S2-jox2017_R1_peak_958 chr3L 18779470 18779713 + 62 NA intron (FBgn0001078, intron 2 of 9) protein_coding-intron (FBgn0001078, intron 2 of 9) -20747 FBgn0001078 FBgn0001078 FBtr0075087 ftz-f1 protein_coding CTCF-S2-jox2017_R1_peak_174 chr2L 11802003 11802220 + 62 NA intron (FBgn0020309, intron 4 of 7) protein_coding-intron (FBgn0020309, intron 4 of 7) -3916 FBgn0086036 FBgn0086036 FBtr0114312 snoRNA:Me18S-A934 snoRNA CTCF-S2-jox2017_R1_peak_1481 chr4 165177 165392 + 62 NA Intergenic Intergenic -6106 FBgn0052006 FBgn0052006 FBtr0089170 CG32006 protein_coding CTCF-S2-jox2017_R1_peak_1258 chr3R 13559137 13559371 + 62 NA promoter-TSS (FBgn0038540) protein_coding-promoter-TSS (FBgn0038540) -68 FBgn0038540 FBgn0038540 FBtr0083511 CG14321 protein_coding CTCF-S2-jox2017_R1_peak_1366 chr3R 20508474 20508946 + 62 NA intron (FBgn0003429, intron 8 of 25) protein_coding-intron (FBgn0003429, intron 8 of 24) 12624 FBgn0261637 FBgn0261637 FBtr0303007 CG42720 protein_coding CTCF-S2-jox2017_R1_peak_1957 chrX 14849264 14849423 + 62 NA promoter-TSS (FBgn0000535) protein_coding-promoter-TSS (FBgn0000535) -167 FBgn0000535 FBgn0000535 FBtr0310015 eag protein_coding CTCF-S2-jox2017_R1_peak_1973 chrX 15581124 15581290 + 61 NA exon (FBgn0030667, exon 3 of 5) protein_coding-exon (FBgn0030667, exon 3 of 5) 1615 FBgn0030667 FBgn0030667 FBtr0307503 CG15599 protein_coding CTCF-S2-jox2017_R1_peak_425 chr2R 7500607 7500841 + 61 NA intron (FBgn0033636, intron 1 of 16) protein_coding-intron (FBgn0033636, intron 1 of 16) -2976 FBgn0264508 FBgn0264508 FBtr0333069 CR43907 ncRNA CTCF-S2-jox2017_R1_peak_1698 chrUextra 28618051 28618306 + 61 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1715 chrUextra 28735872 28736134 + 61 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1308 chr3R 16734281 16734738 + 61 NA TTS (FBgn0038840) protein_coding-TTS (FBgn0038840) -3269 FBgn0044810 FBgn0044810 FBtr0083985 TotX protein_coding CTCF-S2-jox2017_R1_peak_251 chr2L 17465983 17466159 + 61 NA intron (FBgn0000183, intron 1 of 7) protein_coding-intron (FBgn0000183, intron 1 of 7) -5532 FBgn0032640 FBgn0032640 FBtr0080982 Sgt protein_coding CTCF-S2-jox2017_R1_peak_1722 chrUextra 28779931 28780210 + 61 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_273 chr2L 18974248 18974429 + 61 NA promoter-TSS (FBgn0032730) protein_coding-promoter-TSS (FBgn0032730) 110 FBgn0032729 FBgn0032729 FBtr0081186 CG10639 protein_coding CTCF-S2-jox2017_R1_peak_1562 chrUextra 6950149 6950450 + 61 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1791 chrX 2233998 2234181 + 61 NA promoter-TSS (FBgn0003079) protein_coding-promoter-TSS (FBgn0003079) 4593 FBgn0040389 FBgn0040389 FBtr0070405 mRpL14 protein_coding CTCF-S2-jox2017_R1_peak_682 chr3L 2939931 2940108 + 61 NA intron (FBgn0262593, intron 4 of 11) protein_coding-intron (FBgn0262593, intron 4 of 8) 11599 FBgn0052846 FBgn0052846 FBtr0304042 CG32846 protein_coding CTCF-S2-jox2017_R1_peak_1280 chr3R 14839843 14840028 + 61 NA intron (FBgn0026239, intron 4 of 4) protein_coding-intron (FBgn0026239, intron 4 of 4) 9809 FBgn0038672 FBgn0038672 FBtr0083719 CG6005 protein_coding CTCF-S2-jox2017_R1_peak_248 chr2L 17201906 17202092 + 61 NA intron (FBgn0032629, intron 2 of 6) protein_coding-intron (FBgn0032629, intron 2 of 5) 20061 FBgn0046888 FBgn0046888 FBtr0080965 Gr36d protein_coding CTCF-S2-jox2017_R1_peak_1382 chr3R 21525168 21525344 + 61 NA exon (FBgn0051092, exon 11 of 11) protein_coding-exon (FBgn0051092, exon 11 of 11) -12164 FBgn0039360 FBgn0039360 FBtr0084931 CLS protein_coding CTCF-S2-jox2017_R1_peak_1487 chr4 396787 397275 + 61 NA exon (FBgn0262636, exon 10 of 10) protein_coding-exon (FBgn0262636, exon 10 of 10) 16428 FBgn0039904 FBgn0039904 FBtr0307379 Hcf protein_coding CTCF-S2-jox2017_R1_peak_939 chr3L 17795319 17795488 + 61 NA promoter-TSS (FBgn0052190) protein_coding-promoter-TSS (FBgn0052190) -24 FBgn0052190 FBgn0052190 FBtr0075171 NUCB1 protein_coding CTCF-S2-jox2017_R1_peak_2050 chrX 21233983 21234167 + 61 NA promoter-TSS (FBgn0024182) protein_coding-promoter-TSS (FBgn0024182) 20 FBgn0024182 FBgn0024182 FBtr0100536 waw protein_coding CTCF-S2-jox2017_R1_peak_1805 chrX 3237826 3238077 + 61 NA TTS (FBgn0000479) protein_coding-TTS (FBgn0000479) -27516 FBgn0029656 FBgn0029656 FBtr0070536 CG10793 protein_coding CTCF-S2-jox2017_R1_peak_675 chr3L 2554246 2554426 + 60 NA promoter-TSS (FBgn0010905) protein_coding-promoter-TSS (FBgn0010905) -44 FBgn0010905 FBgn0010905 FBtr0308203 Spn protein_coding CTCF-S2-jox2017_R1_peak_956 chr3L 18660312 18660530 + 60 NA promoter-TSS (FBgn0260027) protein_coding-promoter-TSS (FBgn0260027) -40 FBgn0260027 FBgn0260027 FBtr0300582 CG42495 protein_coding CTCF-S2-jox2017_R1_peak_1335 chr3R 18390477 18390691 + 60 NA Intergenic Intergenic -2291 FBgn0038986 FBgn0038986 FBtr0084281 CG5278 protein_coding CTCF-S2-jox2017_R1_peak_1751 chrUextra 28917638 28917897 + 60 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_578 chr2R 17588005 17588473 + 60 NA intron (FBgn0010228, intron 1 of 2) protein_coding-intron (FBgn0010228, intron 1 of 2) 2174 FBgn0010228 FBgn0010228 FBtr0071674 HmgZ protein_coding CTCF-S2-jox2017_R1_peak_128 chr2L 8741004 8741191 + 60 NA promoter-TSS (FBgn0003209) protein_coding-promoter-TSS (FBgn0003209) -437 FBgn0003209 FBgn0003209 FBtr0079746 raw protein_coding CTCF-S2-jox2017_R1_peak_1169 chr3R 7047400 7047576 + 60 NA promoter-TSS (FBgn0020910) protein_coding-promoter-TSS (FBgn0020910) -127 FBgn0037878 FBgn0037878 FBtr0082367 CG6693 protein_coding CTCF-S2-jox2017_R1_peak_503 chr2R 12216306 12216826 + 60 NA intron (FBgn0262511, intron 4 of 10) protein_coding-intron (FBgn0262511, intron 3 of 8) 6873 FBgn0034114 FBgn0034114 FBtr0087144 CG4282 protein_coding CTCF-S2-jox2017_R1_peak_1721 chrUextra 28774298 28774443 + 59 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1411 chr3R 24223066 24223265 + 59 NA Intergenic Intergenic -20765 FBgn0039584 FBgn0039584 FBtr0085289 beat-VI protein_coding CTCF-S2-jox2017_R1_peak_501 chr2R 11738847 11739112 + 59 NA intron (FBgn0034046, intron 1 of 4) protein_coding-intron (FBgn0034046, intron 1 of 4) 2868 FBgn0034046 FBgn0034046 FBtr0087287 tun protein_coding CTCF-S2-jox2017_R1_peak_256 chr2L 17958386 17958547 + 59 NA Intergenic Intergenic -4948 FBgn0032656 FBgn0032656 FBtr0290267 CG5674 protein_coding CTCF-S2-jox2017_R1_peak_1592 chrUextra 13457162 13457428 + 59 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1641 chrUextra 25505515 25505797 + 59 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1320 chr3R 17078300 17078483 + 59 NA intron (FBgn0038874, intron 1 of 4) protein_coding-intron (FBgn0038874, intron 1 of 4) 5365 FBgn0038874 FBgn0038874 FBtr0084054 ETHR protein_coding CTCF-S2-jox2017_R1_peak_1131 chr3R 4916175 4916362 + 59 NA intron (FBgn0003165, intron 8 of 12) protein_coding-intron (FBgn0003165, intron 8 of 12) 25363 FBgn0037661 FBgn0037661 FBtr0081971 Ada protein_coding CTCF-S2-jox2017_R1_peak_1583 chrUextra 11242087 11242270 + 59 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_595 chr2R 18962209 18962407 + 59 NA promoter-TSS (FBgn0034816) protein_coding-promoter-TSS (FBgn0034816) -44 FBgn0034816 FBgn0034816 FBtr0071963 CG3085 protein_coding CTCF-S2-jox2017_R1_peak_490 chr2R 11259007 11259266 + 59 NA promoter-TSS (FBgn0011660) protein_coding-promoter-TSS (FBgn0011660) -115 FBgn0011660 FBgn0011660 FBtr0087388 Pms2 protein_coding CTCF-S2-jox2017_R1_peak_312 chr2L 21904224 21904666 + 59 NA TTS (FBgn0032966) protein_coding-TTS (FBgn0032966) 1383 FBgn0032966 FBgn0032966 FBtr0085928 CG1421 protein_coding CTCF-S2-jox2017_R1_peak_1404 chr3R 23251856 23252069 + 59 NA intron (FBgn0016061, intron 1 of 17) protein_coding-intron (FBgn0016061, intron 1 of 16) 11242 FBgn0016061 FBgn0016061 FBtr0289998 side protein_coding CTCF-S2-jox2017_R1_peak_516 chr2R 13241254 13241418 + 59 NA TTS (FBgn0261642) protein_coding-TTS (FBgn0261642) 38014 FBgn0050232 FBgn0050232 FBtr0086965 tRNA:CR30232 tRNA CTCF-S2-jox2017_R1_peak_821 chr3L 10843205 10843365 + 59 NA Intergenic Intergenic -8219 FBgn0026160 FBgn0026160 FBtr0076268 tna protein_coding CTCF-S2-jox2017_R1_peak_606 chr2R 19597302 19597508 + 58 NA promoter-TSS (FBgn0011297) protein_coding-promoter-TSS (FBgn0011297) -94 FBgn0011297 FBgn0011297 FBtr0072095 l(2)not protein_coding CTCF-S2-jox2017_R1_peak_1953 chrX 14804023 14804304 + 58 NA exon (FBgn0030595, exon 2 of 2) protein_coding-exon (FBgn0030595, exon 2 of 2) 715 FBgn0030595 FBgn0030595 FBtr0073977 CG14406 protein_coding CTCF-S2-jox2017_R1_peak_339 chr2R 2154475 2154730 + 58 NA Intergenic Intergenic 21561 FBgn0033075 FBgn0033075 FBtr0114492 Pld protein_coding CTCF-S2-jox2017_R1_peak_492 chr2R 11399143 11399321 + 58 NA promoter-TSS (FBgn0034025) protein_coding-promoter-TSS (FBgn0034025) -85 FBgn0034025 FBgn0034025 FBtr0087332 GalNAc-T1 protein_coding CTCF-S2-jox2017_R1_peak_1407 chr3R 23596375 23596574 + 58 NA intron (FBgn0085382, intron 11 of 11) protein_coding-intron (FBgn0085382, intron 11 of 11) 34212 FBgn0005659 FBgn0005659 FBtr0085224 Ets98B protein_coding CTCF-S2-jox2017_R1_peak_167 chr2L 11172048 11172231 + 58 NA promoter-TSS (FBgn0014076) protein_coding-promoter-TSS (FBgn0014076) -474 FBgn0014076 FBgn0014076 FBtr0080216 Vm32E protein_coding CTCF-S2-jox2017_R1_peak_1127 chr3R 4805642 4805832 + 58 NA promoter-TSS (FBgn0037646) protein_coding-promoter-TSS (FBgn0037646) -847 FBgn0037646 FBgn0037646 FBtr0081958 CAHbeta protein_coding CTCF-S2-jox2017_R1_peak_1826 chrX 4448178 4448415 + 58 NA promoter-TSS (FBgn0029715) protein_coding-promoter-TSS (FBgn0029715) -70 FBgn0029715 FBgn0029715 FBtr0070698 CG11444 protein_coding CTCF-S2-jox2017_R1_peak_153 chr2L 9813926 9814096 + 58 NA intron (FBgn0032151, intron 6 of 13) protein_coding-intron (FBgn0032151, intron 5 of 13) -20904 FBgn0032150 FBgn0032150 FBtr0331286 CG13123 protein_coding CTCF-S2-jox2017_R1_peak_602 chr2R 19227217 19227419 + 58 NA Intergenic Intergenic -6840 FBgn0034846 FBgn0034846 FBtr0290285 CG9863 protein_coding CTCF-S2-jox2017_R1_peak_1385 chr3R 21754710 21754906 + 58 NA intron (FBgn0039396, intron 2 of 6) protein_coding-intron (FBgn0039396, intron 2 of 6) -2315 FBgn0054024 FBgn0054024 FBtr0308933 CR34024 ncRNA CTCF-S2-jox2017_R1_peak_1435 chr3R 25960117 25960269 + 58 NA promoter-TSS (FBgn0086355) protein_coding-promoter-TSS (FBgn0086355) -196 FBgn0086355 FBgn0086355 FBtr0085584 Tpi protein_coding CTCF-S2-jox2017_R1_peak_195 chr2L 12520249 12520658 + 57 NA intron (FBgn0259176, intron 5 of 7) protein_coding-intron (FBgn0259176, intron 5 of 7) 12345 FBgn0263458 FBgn0263458 FBtr0309757 snoRNA:CG43051-a snoRNA CTCF-S2-jox2017_R1_peak_487 chr2R 11132470 11132774 + 57 NA Intergenic Intergenic -3538 FBgn0259878 FBgn0259878 FBtr0087398 Fs protein_coding CTCF-S2-jox2017_R1_peak_1203 chr3R 9889976 9890133 + 57 NA intron (FBgn0038197, intron 2 of 10) protein_coding-intron (FBgn0038197, intron 2 of 10) 7364 FBgn0038197 FBgn0038197 FBtr0305052 foxo protein_coding CTCF-S2-jox2017_R1_peak_485 chr2R 11023859 11024272 + 57 NA intron (FBgn0015371, intron 1 of 5) protein_coding-intron (FBgn0015371, intron 1 of 4) 8959 FBgn0262954 FBgn0262954 FBtr0112379 Rpb12 protein_coding CTCF-S2-jox2017_R1_peak_27 chr2L 1697699 1697881 + 57 NA TTS (FBgn0086758) protein_coding-TTS (FBgn0086758) -7341 FBgn0011570 FBgn0011570 FBtr0331630 cpb protein_coding CTCF-S2-jox2017_R1_peak_403 chr2R 6363051 6363235 + 57 NA promoter-TSS (FBgn0261862) protein_coding-promoter-TSS (FBgn0261862) -160 FBgn0261862 FBgn0261862 FBtr0301282 whd protein_coding CTCF-S2-jox2017_R1_peak_442 chr2R 8465736 8465908 + 57 NA TTS (FBgn0022764) protein_coding-TTS (FBgn0022764) 6205 FBgn0033755 FBgn0033755 FBtr0087826 ClC-b protein_coding CTCF-S2-jox2017_R1_peak_763 chr3L 7359233 7359447 + 57 NA TTS (FBgn0035772) protein_coding-TTS (FBgn0035772) 3020 FBgn0035772 FBgn0035772 FBtr0302546 Sh3beta protein_coding CTCF-S2-jox2017_R1_peak_1172 chr3R 7096442 7096618 + 57 NA exon (FBgn0051386, exon 5 of 5) ncRNA-exon (FBgn0051386, exon 5 of 5) -14685 FBgn0262972 FBgn0262972 FBtr0306728 CR43283 ncRNA CTCF-S2-jox2017_R1_peak_1211 chr3R 10658047 10658344 + 57 NA intron (FBgn0053555, intron 1 of 13) protein_coding-intron (FBgn0053555, intron 1 of 11) -12570 FBgn0038266 FBgn0038266 FBtr0082994 CG3610 protein_coding CTCF-S2-jox2017_R1_peak_1853 chrX 6147797 6148172 + 57 NA intron (FBgn0023458, intron 1 of 14) protein_coding-intron (FBgn0023458, intron 1 of 14) 1397 FBgn0023458 FBgn0023458 FBtr0303341 Rbcn-3A protein_coding CTCF-S2-jox2017_R1_peak_735 chr3L 5742866 5743034 + 57 NA TTS (FBgn0263106) protein_coding-TTS (FBgn0263106) 2339 FBgn0263106 FBgn0263106 FBtr0077124 DnaJ-1 protein_coding CTCF-S2-jox2017_R1_peak_888 chr3L 14544421 14544606 + 56 NA promoter-TSS (FBgn0036428) protein_coding-promoter-TSS (FBgn0036428) -438 FBgn0036428 FBgn0036428 FBtr0075723 CG9238 protein_coding CTCF-S2-jox2017_R1_peak_1069 chr3R 671064 671224 + 56 NA Intergenic Intergenic -7391 FBgn0003002 FBgn0003002 FBtr0078836 opa protein_coding CTCF-S2-jox2017_R1_peak_1622 chrUextra 22410197 22410347 + 56 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_133 chr2L 9342045 9342271 + 56 NA promoter-TSS (FBgn0032110) protein_coding-promoter-TSS (FBgn0032110) -674 FBgn0032110 FBgn0032110 FBtr0079803 CG3748 protein_coding CTCF-S2-jox2017_R1_peak_1526 chrU 2769076 2769332 + 56 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_78 chr2L 5403555 5403738 + 56 NA promoter-TSS (FBgn0016660) protein_coding-promoter-TSS (FBgn0016660) -696 FBgn0016660 FBgn0016660 FBtr0079076 H15 protein_coding CTCF-S2-jox2017_R1_peak_684 chr3L 3185722 3185915 + 56 NA promoter-TSS (FBgn0052284) protein_coding-promoter-TSS (FBgn0052284) -846 FBgn0052284 FBgn0052284 FBtr0073037 CG32284 protein_coding CTCF-S2-jox2017_R1_peak_740 chr3L 5950386 5950542 + 56 NA Intergenic Intergenic 18643 FBgn0035656 FBgn0035656 FBtr0332041 CG10479 protein_coding CTCF-S2-jox2017_R1_peak_1859 chrX 6909216 6909368 + 56 NA TTS (FBgn0029929) protein_coding-TTS (FBgn0029929) 1356 FBgn0029929 FBgn0029929 FBtr0071009 CG4593 protein_coding CTCF-S2-jox2017_R1_peak_139 chr2L 9568386 9568547 + 56 NA promoter-TSS (FBgn0032130) protein_coding-promoter-TSS (FBgn0032130) -1851 FBgn0032130 FBgn0032130 FBtr0079835 CG3838 protein_coding CTCF-S2-jox2017_R1_peak_919 chr3L 16556565 16556889 + 56 NA TTS (FBgn0026061) protein_coding-TTS (FBgn0026061) -3123 FBgn0262842 FBgn0262842 FBtr0306084 CG43206 protein_coding CTCF-S2-jox2017_R1_peak_462 chr2R 9845273 9845441 + 55 NA TTS (FBgn0033886) protein_coding-TTS (FBgn0033886) 237 FBgn0262739 FBgn0262739 FBtr0087613 AGO1 protein_coding CTCF-S2-jox2017_R1_peak_270 chr2L 18839051 18839230 + 55 NA TTS (FBgn0051752) protein_coding-TTS (FBgn0051752) 539 FBgn0032717 FBgn0032717 FBtr0081120 CG10600 protein_coding CTCF-S2-jox2017_R1_peak_981 chr3L 20161633 20161806 + 55 NA exon (FBgn0261556, exon 3 of 15) protein_coding-exon (FBgn0261556, exon 3 of 15) 16766 FBgn0261556 FBgn0261556 FBtr0332699 CG42674 protein_coding CTCF-S2-jox2017_R1_peak_1570 chrUextra 7598778 7599026 + 55 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_158 chr2L 10053660 10053971 + 55 NA promoter-TSS (FBgn0053302) protein_coding-promoter-TSS (FBgn0053302) -400 FBgn0053302 FBgn0053302 FBtr0079936 Cpr31A protein_coding CTCF-S2-jox2017_R1_peak_181 chr2L 11940709 11941246 + 55 NA Intergenic Intergenic 3008 FBgn0026390 FBgn0026390 FBtr0080280 Or33c protein_coding CTCF-S2-jox2017_R1_peak_982 chr3L 20167367 20167599 + 55 NA intron (FBgn0261556, intron 3 of 14) protein_coding-intron (FBgn0261556, intron 2 of 14) 11002 FBgn0261556 FBgn0261556 FBtr0332699 CG42674 protein_coding CTCF-S2-jox2017_R1_peak_491 chr2R 11373051 11373254 + 54 NA TTS (FBgn0034022) protein_coding-TTS (FBgn0034022) -2814 FBgn0034021 FBgn0034021 FBtr0087359 CG8180 protein_coding CTCF-S2-jox2017_R1_peak_1129 chr3R 4840938 4841156 + 54 NA promoter-TSS (FBgn0037656) protein_coding-promoter-TSS (FBgn0037656) -42 FBgn0040534 FBgn0040534 FBtr0082006 CG11985 protein_coding CTCF-S2-jox2017_R1_peak_914 chr3L 16157678 16157949 + 54 NA promoter-TSS (FBgn0036576) protein_coding-promoter-TSS (FBgn0036576) -12 FBgn0036576 FBgn0036576 FBtr0307519 CG5151 protein_coding CTCF-S2-jox2017_R1_peak_1522 chrU 2307919 2308136 + 54 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1808 chrX 3317299 3317523 + 54 NA intron (FBgn0029657, intron 3 of 4) protein_coding-intron (FBgn0029657, intron 2 of 3) 4145 FBgn0052493 FBgn0052493 FBtr0070533 tRNA:CR32493 tRNA CTCF-S2-jox2017_R1_peak_193 chr2L 12404063 12404221 + 54 NA exon (FBgn0043841, exon 6 of 6) protein_coding-exon (FBgn0043841, exon 6 of 6) 5868 FBgn0041195 FBgn0041195 FBtr0080365 Pkd2 protein_coding CTCF-S2-jox2017_R1_peak_875 chr3L 13998328 13998489 + 54 NA intron (FBgn0036398, intron 2 of 7) protein_coding-intron (FBgn0036398, intron 2 of 7) 3181 FBgn0036398 FBgn0036398 FBtr0333050 CG9007 protein_coding CTCF-S2-jox2017_R1_peak_874 chr3L 13950638 13950888 + 54 NA intron (FBgn0052137, intron 2 of 6) protein_coding-intron (FBgn0052137, intron 2 of 6) 7039 FBgn0025874 FBgn0025874 FBtr0333030 Meics protein_coding CTCF-S2-jox2017_R1_peak_1781 chrX 1519449 1519709 + 54 NA intron (FBgn0000210, intron 3 of 8) protein_coding-intron (FBgn0000210, intron 2 of 7) -7391 FBgn0025390 FBgn0025390 FBtr0070284 Mur2B protein_coding CTCF-S2-jox2017_R1_peak_1666 chrUextra 27511740 27511896 + 54 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_221 chr2L 14287995 14288155 + 54 NA intron (FBgn0261563, intron 3 of 12) protein_coding-intron (FBgn0261563, intron 3 of 15) -3126 FBgn0263648 FBgn0263648 FBtr0310012 CR43639 ncRNA CTCF-S2-jox2017_R1_peak_1123 chr3R 4643007 4643181 + 54 NA TTS (FBgn0037636) protein_coding-TTS (FBgn0037636) -2246 FBgn0262604 FBgn0262604 FBtr0305278 CG43130 protein_coding CTCF-S2-jox2017_R1_peak_893 chr3L 14851599 14851744 + 53 NA intron (FBgn0036454, intron 3 of 7) protein_coding-intron (FBgn0036454, intron 3 of 18) 35845 FBgn0085274 FBgn0085274 FBtr0302580 CG34245 protein_coding CTCF-S2-jox2017_R1_peak_1734 chrUextra 28840022 28840173 + 53 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_240 chr2L 16598803 16598997 + 53 NA intron (FBgn0259735, intron 2 of 4) protein_coding-intron (FBgn0259735, intron 2 of 4) -7045 FBgn0051815 FBgn0051815 FBtr0080870 CG31815 protein_coding CTCF-S2-jox2017_R1_peak_1023 chr3L 23656358 23656567 + 53 NA intron (FBgn0250816, intron 7 of 7) protein_coding-intron (FBgn0250816, intron 7 of 7) -51929 FBgn0039977 FBgn0039977 FBtr0333911 CG17454 protein_coding CTCF-S2-jox2017_R1_peak_1086 chr3R 1919151 1919502 + 53 NA exon (FBgn0026077, exon 5 of 5) protein_coding-exon (FBgn0026077, exon 5 of 5) 7283 FBgn0026077 FBgn0026077 FBtr0078619 Gasp protein_coding CTCF-S2-jox2017_R1_peak_480 chr2R 10603360 10603508 + 53 NA Intergenic Intergenic -2307 FBgn0020269 FBgn0020269 FBtr0087477 mspo protein_coding CTCF-S2-jox2017_R1_peak_1068 chr3R 627857 628012 + 53 NA promoter-TSS (FBgn0260794) protein_coding-promoter-TSS (FBgn0260794) 9849 FBgn0260794 FBgn0260794 FBtr0303915 ctrip protein_coding CTCF-S2-jox2017_R1_peak_836 chr3L 11308393 11308667 + 53 NA Intergenic Intergenic 3683 FBgn0036153 FBgn0036153 FBtr0076171 CG7573 protein_coding CTCF-S2-jox2017_R1_peak_591 chr2R 18656048 18656248 + 53 NA intron (FBgn0259145, intron 2 of 11) protein_coding-intron (FBgn0259145, intron 2 of 11) 4909 FBgn0034776 FBgn0034776 FBtr0071880 CG13527 protein_coding CTCF-S2-jox2017_R1_peak_1497 chr4 757229 757388 + 53 NA intron (FBgn0005666, intron 20 of 45) protein_coding-intron (FBgn0005666, intron 16 of 40) 12278 FBgn0005666 FBgn0005666 FBtr0301341 bt protein_coding CTCF-S2-jox2017_R1_peak_1719 chrUextra 28746040 28746249 + 53 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_583 chr2R 17857112 17857404 + 53 NA intron (FBgn0085398, intron 7 of 9) protein_coding-intron (FBgn0085398, intron 7 of 9) 1527 FBgn0054029 FBgn0054029 FBtr0100084 CG34029 protein_coding CTCF-S2-jox2017_R1_peak_151 chr2L 9803703 9804232 + 53 NA intron (FBgn0032151, intron 9 of 13) protein_coding-intron (FBgn0032151, intron 9 of 13) -10860 FBgn0032150 FBgn0032150 FBtr0331286 CG13123 protein_coding CTCF-S2-jox2017_R1_peak_725 chr3L 5268722 5268894 + 53 NA intron (FBgn0052423, intron 2 of 11) protein_coding-intron (FBgn0052423, intron 2 of 10) 41225 FBgn0035598 FBgn0035598 FBtr0077171 CG4669 protein_coding CTCF-S2-jox2017_R1_peak_1657 chrUextra 27077169 27077526 + 52 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_348 chr2R 3027124 3027386 + 52 NA Intergenic Intergenic -7615 FBgn0015039 FBgn0015039 FBtr0089055 Cyp9b2 protein_coding CTCF-S2-jox2017_R1_peak_1119 chr3R 4194386 4194534 + 52 NA intron (FBgn0263416, intron 15 of 15) protein_coding-intron (FBgn0263416, intron 15 of 15) 5912 FBgn0037584 FBgn0037584 FBtr0301759 CG7963 protein_coding CTCF-S2-jox2017_R1_peak_1216 chr3R 11242168 11242340 + 52 NA TTS (FBgn0041188) protein_coding-TTS (FBgn0041188) 901 FBgn0262367 FBgn0262367 FBtr0304170 mir-13b-1 pre_miRNA CTCF-S2-jox2017_R1_peak_349 chr2R 3074060 3074664 + 52 NA promoter-TSS (FBgn0003090) protein_coding-promoter-TSS (FBgn0003090) -405 FBgn0003090 FBgn0003090 FBtr0089044 pk protein_coding CTCF-S2-jox2017_R1_peak_1699 chrUextra 28628674 28628927 + 52 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1776 chrX 1194057 1194210 + 52 NA intron (FBgn0025641, intron 3 of 11) protein_coding-intron (FBgn0025641, intron 3 of 11) -1713 FBgn0052811 FBgn0052811 FBtr0302877 CG32811 protein_coding CTCF-S2-jox2017_R1_peak_634 chr2RHet 547905 548432 + 52 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_283 chr2L 19426514 19426711 + 52 NA promoter-TSS (FBgn0032779) protein_coding-promoter-TSS (FBgn0032779) 290 FBgn0032780 FBgn0032780 FBtr0081203 CG13085 protein_coding CTCF-S2-jox2017_R1_peak_704 chr3L 3978881 3979042 + 52 NA Intergenic Intergenic -4935 FBgn0004880 FBgn0004880 FBtr0073165 scrt protein_coding CTCF-S2-jox2017_R1_peak_1527 chrU 3070540 3070726 + 52 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_713 chr3L 4513929 4514183 + 52 NA exon (FBgn0014073, exon 3 of 6) protein_coding-exon (FBgn0014073, exon 3 of 6) -5623 FBgn0261526 FBgn0261526 FBtr0301520 NT1 protein_coding CTCF-S2-jox2017_R1_peak_363 chr2R 4227655 4227978 + 52 NA intron (FBgn0261588, intron 1 of 10) protein_coding-intron (FBgn0261588, intron 1 of 10) 12811 FBgn0261588 FBgn0261588 FBtr0302918 pdm3 protein_coding CTCF-S2-jox2017_R1_peak_85 chr2L 6249390 6249562 + 52 NA Intergenic Intergenic -3647 FBgn0053531 FBgn0053531 FBtr0301305 Ddr protein_coding CTCF-S2-jox2017_R1_peak_1503 chrU 89198 89436 + 52 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1365 chr3R 20412374 20412528 + 52 NA intron (FBgn0263490, intron 1 of 4) protein_coding-intron (FBgn0263490, intron 1 of 5) 1076 FBgn0263490 FBgn0263490 FBtr0304914 mld protein_coding CTCF-S2-jox2017_R1_peak_1066 chr3R 531470 531787 + 51 NA promoter-TSS (FBgn0263346) protein_coding-promoter-TSS (FBgn0263346) 8290 FBgn0037270 FBgn0037270 FBtr0078892 CG9769 protein_coding CTCF-S2-jox2017_R1_peak_808 chr3L 10173597 10173763 + 51 NA intron (FBgn0052057, intron 2 of 6) protein_coding-intron (FBgn0052057, intron 2 of 7) 5528 FBgn0052057 FBgn0052057 FBtr0331552 dpr10 protein_coding CTCF-S2-jox2017_R1_peak_1870 chrX 7584820 7584978 + 51 NA intron (FBgn0029504, intron 1 of 5) protein_coding-intron (FBgn0029504, intron 1 of 5) 4052 FBgn0029504 FBgn0029504 FBtr0071079 CHES-1-like protein_coding CTCF-S2-jox2017_R1_peak_1337 chr3R 18680704 18680849 + 51 NA Intergenic Intergenic -3250 FBgn0264428 FBgn0264428 FBtr0332548 CR43846 ncRNA CTCF-S2-jox2017_R1_peak_848 chr3L 11996066 11996351 + 51 NA promoter-TSS (FBgn0036240) protein_coding-promoter-TSS (FBgn0036240) -47 FBgn0036240 FBgn0036240 FBtr0332709 CG6928 protein_coding CTCF-S2-jox2017_R1_peak_395 chr2R 6059455 6059632 + 51 NA intron (FBgn0033494, intron 1 of 16) protein_coding-intron (FBgn0033494, intron 1 of 16) -13454 FBgn0033495 FBgn0033495 FBtr0088370 CG12214 protein_coding CTCF-S2-jox2017_R1_peak_878 chr3L 14188927 14189098 + 51 NA intron (FBgn0013718, intron 1 of 10) protein_coding-intron (FBgn0013718, intron 1 of 9) -6264 FBgn0036414 FBgn0036414 FBtr0321258 nan protein_coding CTCF-S2-jox2017_R1_peak_750 chr3L 6736710 6737015 + 51 NA promoter-TSS (FBgn0261934) protein_coding-promoter-TSS (FBgn0261934) -598 FBgn0261934 FBgn0261934 FBtr0303748 dikar protein_coding CTCF-S2-jox2017_R1_peak_635 chr2RHet 2780913 2781559 + 51 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_288 chr2L 19896317 19896490 + 51 NA intron (FBgn0263873, intron 1 of 13) protein_coding-intron (FBgn0263873, intron 4 of 15) -3853 FBgn0032827 FBgn0032827 FBtr0081312 CG10481 protein_coding CTCF-S2-jox2017_R1_peak_186 chr2L 12127361 12127852 + 51 NA exon (FBgn0032414, exon 5 of 6) protein_coding-exon (FBgn0032414, exon 5 of 6) 5761 FBgn0032415 FBgn0032415 FBtr0080360 rho-6 protein_coding CTCF-S2-jox2017_R1_peak_791 chr3L 9188299 9188482 + 51 NA Intergenic Intergenic 11323 FBgn0035968 FBgn0035968 FBtr0332126 Slc45-1 protein_coding CTCF-S2-jox2017_R1_peak_548 chr2R 15520394 15520629 + 51 NA Intergenic Intergenic -2273 FBgn0261807 FBgn0261807 FBtr0303283 CG42753 protein_coding CTCF-S2-jox2017_R1_peak_623 chr2RHet 16264 16603 + 51 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_762 chr3L 7349264 7349736 + 51 NA TTS (FBgn0035770) protein_coding-TTS (FBgn0035770) 313 FBgn0035769 FBgn0035769 FBtr0076878 CTCF protein_coding CTCF-S2-jox2017_R1_peak_1250 chr3R 12882212 12882376 + 50 NA intron (FBgn0020493, intron 2 of 7) protein_coding-intron (FBgn0020493, intron 2 of 7) 2565 FBgn0020493 FBgn0020493 FBtr0083394 Dad protein_coding CTCF-S2-jox2017_R1_peak_222 chr2L 14547521 14547677 + 50 NA TTS (FBgn0250844) protein_coding-TTS (FBgn0250844) 1476 FBgn0250844 FBgn0250844 FBtr0080662 CG4218 protein_coding CTCF-S2-jox2017_R1_peak_2042 chrX 20639909 20640092 + 50 NA exon (FBgn0085387, exon 10 of 10) protein_coding-exon (FBgn0085387, exon 10 of 10) -8020 FBgn0264390 FBgn0264390 FBtr0332284 CR43838 ncRNA CTCF-S2-jox2017_R1_peak_1412 chr3R 24238388 24238563 + 50 NA Intergenic Intergenic -5455 FBgn0039584 FBgn0039584 FBtr0085289 beat-VI protein_coding CTCF-S2-jox2017_R1_peak_87 chr2L 6338372 6338847 + 50 NA promoter-TSS (FBgn0015623) protein_coding-promoter-TSS (FBgn0015623) 62 FBgn0031799 FBgn0031799 FBtr0079284 Pez protein_coding CTCF-S2-jox2017_R1_peak_913 chr3L 16156984 16157168 + 50 NA exon (FBgn0036576, exon 1 of 5) protein_coding-exon (FBgn0036576, exon 1 of 5) 725 FBgn0036576 FBgn0036576 FBtr0307519 CG5151 protein_coding CTCF-S2-jox2017_R1_peak_469 chr2R 10164602 10164778 + 50 NA intron (FBgn0263397, intron 1 of 7) protein_coding-intron (FBgn0263397, intron 1 of 14) 6384 FBgn0261269 FBgn0261269 FBtr0087540 conv protein_coding CTCF-S2-jox2017_R1_peak_694 chr3L 3678433 3678664 + 50 NA Intergenic Intergenic -10238 FBgn0263495 FBgn0263495 FBtr0309509 CR43484 ncRNA CTCF-S2-jox2017_R1_peak_1362 chr3R 20321623 20321796 + 50 NA Intergenic Intergenic 7330 FBgn0262389 FBgn0262389 FBtr0304260 mir-1017 pre_miRNA CTCF-S2-jox2017_R1_peak_610 chr2R 20200727 20200923 + 50 NA TTS (FBgn0003888) protein_coding-TTS (FBgn0003888) 7420 FBgn0003888 FBgn0003888 FBtr0072270 betaTub60D protein_coding CTCF-S2-jox2017_R1_peak_47 chr2L 3618746 3618950 + 50 NA promoter-TSS (FBgn0015663) protein_coding-promoter-TSS (FBgn0015663) -343 FBgn0015663 FBgn0015663 FBtr0077532 Dot protein_coding CTCF-S2-jox2017_R1_peak_1081 chr3R 1494729 1494885 + 50 NA promoter-TSS (FBgn0037363) protein_coding-promoter-TSS (FBgn0037363) 243 FBgn0010772 FBgn0010772 FBtr0302368 Xe7 protein_coding CTCF-S2-jox2017_R1_peak_1288 chr3R 15505663 15505829 + 50 NA intron (FBgn0051216, intron 1 of 6) protein_coding-intron (FBgn0051216, intron 1 of 6) -7675 FBgn0012003 FBgn0012003 FBtr0083799 tRNA:V3b:92Ba tRNA CTCF-S2-jox2017_R1_peak_1011 chr3L 21946244 21946498 + 50 NA Intergenic Intergenic -1839 FBgn0037144 FBgn0037144 FBtr0078475 CG7458 protein_coding CTCF-S2-jox2017_R1_peak_1380 chr3R 21252997 21253201 + 50 NA intron (FBgn0004509, intron 1 of 9) protein_coding-intron (FBgn0004509, intron 2 of 11) -26732 FBgn0051439 FBgn0051439 FBtr0084845 Muc96D protein_coding CTCF-S2-jox2017_R1_peak_5 chr2L 248318 248476 + 50 NA intron (FBgn0086902, intron 1 of 16) protein_coding-intron (FBgn0086902, intron 1 of 17) 2426 FBgn0086902 FBgn0086902 FBtr0078145 kis protein_coding CTCF-S2-jox2017_R1_peak_709 chr3L 4286235 4286380 + 50 NA promoter-TSS (FBgn0015829) protein_coding-promoter-TSS (FBgn0015829) -731 FBgn0015829 FBgn0015829 FBtr0300449 TfIIEbeta protein_coding CTCF-S2-jox2017_R1_peak_166 chr2L 11035538 11035703 + 49 NA TTS (FBgn0040967) protein_coding-TTS (FBgn0040967) 771 FBgn0040967 FBgn0040967 FBtr0080160 CG18666 protein_coding CTCF-S2-jox2017_R1_peak_131 chr2L 9277570 9277753 + 49 NA intron (FBgn0263984, intron 2 of 2) protein_coding-intron (FBgn0028433, intron 3 of 3) 21098 FBgn0028433 FBgn0028433 FBtr0309247 Ggamma30A protein_coding CTCF-S2-jox2017_R1_peak_409 chr2R 6452438 6452610 + 49 NA intron (FBgn0263102, intron 3 of 10) protein_coding-intron (FBgn0263102, intron 3 of 9) 7131 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding CTCF-S2-jox2017_R1_peak_989 chr3L 20457894 20458054 + 49 NA promoter-TSS (FBgn0036995) protein_coding-promoter-TSS (FBgn0036995) -12 FBgn0036995 FBgn0036995 FBtr0331569 CG5195 protein_coding CTCF-S2-jox2017_R1_peak_29 chr2L 1902388 1902573 + 49 NA intron (FBgn0031374, intron 1 of 17) protein_coding-intron (FBgn0031374, intron 1 of 18) 17858 FBgn0031374 FBgn0031374 FBtr0110882 CG7337 protein_coding CTCF-S2-jox2017_R1_peak_1811 chrX 3568968 3569160 + 49 NA intron (FBgn0023215, intron 1 of 8) protein_coding-intron (FBgn0023215, intron 1 of 8) -3529 FBgn0023216 FBgn0023216 FBtr0307279 Parg protein_coding CTCF-S2-jox2017_R1_peak_1714 chrUextra 28734827 28735074 + 49 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_35 chr2L 2704827 2705000 + 49 NA intron (FBgn0051690, intron 2 of 7) protein_coding-intron (FBgn0051690, intron 3 of 8) -8476 FBgn0031446 FBgn0031446 FBtr0300986 CG15398 protein_coding CTCF-S2-jox2017_R1_peak_1643 chrUextra 25742571 25742827 + 49 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_991 chr3L 20490938 20491093 + 49 NA TTS (FBgn0037001) protein_coding-TTS (FBgn0037001) 592 FBgn0052425 FBgn0052425 FBtr0078204 CG32425 protein_coding CTCF-S2-jox2017_R1_peak_1899 chrX 10100228 10100461 + 49 NA TTS (FBgn0030183) protein_coding-TTS (FBgn0030183) 1911 FBgn0052690 FBgn0052690 FBtr0303456 CR32690 ncRNA CTCF-S2-jox2017_R1_peak_1765 chrUextra 28994780 28995032 + 48 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1273 chr3R 14093293 14093441 + 48 NA promoter-TSS (FBgn0038592) protein_coding-promoter-TSS (FBgn0038592) -143 FBgn0038592 FBgn0038592 FBtr0083571 CG18599 protein_coding CTCF-S2-jox2017_R1_peak_796 chr3L 9464201 9464378 + 48 NA exon (FBgn0052043, exon 5 of 5) protein_coding-exon (FBgn0052043, exon 5 of 5) -1866 FBgn0036003 FBgn0036003 FBtr0310528 CG14180 protein_coding CTCF-S2-jox2017_R1_peak_225 chr2L 14781911 14782071 + 48 NA exon (FBgn0028867, exon 4 of 4) pseudogene-exon (FBgn0028867, exon 4 of 4) 1119 FBgn0028867 FBgn0028867 FBtr0100604 CR15280 pseudogene CTCF-S2-jox2017_R1_peak_792 chr3L 9324502 9324682 + 48 NA Intergenic Intergenic -4197 FBgn0035975 FBgn0035975 FBtr0076433 PGRP-LA protein_coding CTCF-S2-jox2017_R1_peak_1457 chr3RHet 837467 837686 + 48 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_858 chr3L 12519984 12520217 + 48 NA promoter-TSS (FBgn0004926) protein_coding-promoter-TSS (FBgn0004926) -263 FBgn0004926 FBgn0004926 FBtr0075968 eIF-2beta protein_coding CTCF-S2-jox2017_R1_peak_1658 chrUextra 27214167 27214405 + 48 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1277 chr3R 14544469 14544645 + 48 NA TTS (FBgn0015323) protein_coding-TTS (FBgn0015323) 3687 FBgn0085312 FBgn0085312 FBtr0112479 CG34283 protein_coding CTCF-S2-jox2017_R1_peak_1954 chrX 14804777 14804953 + 48 NA promoter-TSS (FBgn0030595) protein_coding-promoter-TSS (FBgn0030595) 13 FBgn0030595 FBgn0030595 FBtr0073977 CG14406 protein_coding CTCF-S2-jox2017_R1_peak_822 chr3L 10855461 10855624 + 48 NA intron (FBgn0026160, intron 1 of 10) protein_coding-intron (FBgn0026160, intron 1 of 10) 4038 FBgn0026160 FBgn0026160 FBtr0076268 tna protein_coding CTCF-S2-jox2017_R1_peak_730 chr3L 5534844 5535005 + 48 NA intron (FBgn0035612, intron 2 of 7) protein_coding-intron (FBgn0035612, intron 3 of 9) -6065 FBgn0035611 FBgn0035611 FBtr0077141 CG13285 protein_coding CTCF-S2-jox2017_R1_peak_902 chr3L 15357929 15358091 + 48 NA Intergenic Intergenic 28218 FBgn0036494 FBgn0036494 FBtr0075614 Toll-6 protein_coding CTCF-S2-jox2017_R1_peak_782 chr3L 8759374 8759549 + 48 NA promoter-TSS (FBgn0261259) protein_coding-promoter-TSS (FBgn0261259) 10372 FBgn0035924 FBgn0035924 FBtr0076576 CG6576 protein_coding CTCF-S2-jox2017_R1_peak_280 chr2L 19398840 19399069 + 48 NA promoter-TSS (FBgn0032775) protein_coding-promoter-TSS (FBgn0032775) -462 FBgn0032775 FBgn0032775 FBtr0300822 CG17544 protein_coding CTCF-S2-jox2017_R1_peak_196 chr2L 12521040 12521209 + 48 NA intron (FBgn0259176, intron 5 of 7) protein_coding-intron (FBgn0259176, intron 5 of 7) 13016 FBgn0263458 FBgn0263458 FBtr0309757 snoRNA:CG43051-a snoRNA CTCF-S2-jox2017_R1_peak_1484 chr4 334471 334662 + 48 NA promoter-TSS (FBgn0052850) protein_coding-promoter-TSS (FBgn0052850) 147 FBgn0039902 FBgn0039902 FBtr0089133 CG2177 protein_coding CTCF-S2-jox2017_R1_peak_1092 chr3R 2248980 2249159 + 48 NA intron (FBgn0264495, intron 2 of 9) protein_coding-intron (FBgn0264495, intron 2 of 8) 16490 FBgn0264495 FBgn0264495 FBtr0303788 gpp protein_coding CTCF-S2-jox2017_R1_peak_406 chr2R 6408768 6408926 + 48 NA TTS (FBgn0005630) protein_coding-TTS (FBgn0005630) 13736 FBgn0005630 FBgn0005630 FBtr0089362 lola protein_coding CTCF-S2-jox2017_R1_peak_1289 chr3R 15517515 15517679 + 48 NA intron (FBgn0051216, intron 3 of 6) protein_coding-intron (FBgn0051216, intron 3 of 6) -19526 FBgn0012003 FBgn0012003 FBtr0083799 tRNA:V3b:92Ba tRNA CTCF-S2-jox2017_R1_peak_1885 chrX 9343568 9343718 + 47 NA intron (FBgn0261260, intron 2 of 2) protein_coding-intron (FBgn0261260, intron 2 of 14) 46578 FBgn0261260 FBgn0261260 FBtr0302154 mgl protein_coding CTCF-S2-jox2017_R1_peak_1502 chr4 1133595 1133842 + 47 NA exon (FBgn0005561, exon 13 of 13) protein_coding-exon (FBgn0005561, exon 13 of 13) 10265 FBgn0039928 FBgn0039928 FBtr0333700 cals protein_coding CTCF-S2-jox2017_R1_peak_703 chr3L 3927315 3927464 + 47 NA intron (FBgn0004910, intron 3 of 6) protein_coding-intron (FBgn0004910, intron 3 of 6) -1787 FBgn0004910 FBgn0004910 FBtr0073174 Eip63F-1 protein_coding CTCF-S2-jox2017_R1_peak_1399 chr3R 22782124 22782427 + 47 NA exon (FBgn0039464, exon 2 of 6) protein_coding-exon (FBgn0039464, exon 2 of 6) -3300 FBgn0039464 FBgn0039464 FBtr0085085 CG6330 protein_coding CTCF-S2-jox2017_R1_peak_432 chr2R 7976050 7976257 + 47 NA exon (FBgn0086677, exon 3 of 3) protein_coding-exon (FBgn0086677, exon 3 of 3) 7372 FBgn0033680 FBgn0033680 FBtr0087981 CG13186 protein_coding CTCF-S2-jox2017_R1_peak_311 chr2L 21899130 21899730 + 47 NA Intergenic Intergenic -1141 FBgn0032965 FBgn0032965 FBtr0085950 CG11629 protein_coding CTCF-S2-jox2017_R1_peak_1689 chrUextra 28551622 28551880 + 47 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_7 chr2L 395493 395658 + 47 NA promoter-TSS (FBgn0263871) ncRNA-promoter-TSS (FBgn0263871) -545 FBgn0263871 FBgn0263871 FBtr0329831 CR43718 ncRNA CTCF-S2-jox2017_R1_peak_171 chr2L 11494122 11494320 + 47 NA Intergenic Intergenic 4898 FBgn0032361 FBgn0032361 FBtr0080248 CG6488 protein_coding CTCF-S2-jox2017_R1_peak_2046 chrX 20944309 20944454 + 47 NA intron (FBgn0031150, intron 2 of 6) protein_coding-intron (FBgn0031150, intron 2 of 6) -8766 FBgn0052512 FBgn0052512 FBtr0332847 CG32512 protein_coding CTCF-S2-jox2017_R1_peak_850 chr3L 12042832 12043006 + 47 NA intron (FBgn0041096, intron 2 of 6) protein_coding-intron (FBgn0041096, intron 2 of 7) 5240 FBgn0263647 FBgn0263647 FBtr0310008 CG43638 protein_coding CTCF-S2-jox2017_R1_peak_1346 chr3R 19222701 19222918 + 47 NA Intergenic Intergenic -5721 FBgn0259193 FBgn0259193 FBtr0299677 Ir94d protein_coding CTCF-S2-jox2017_R1_peak_861 chr3L 12879676 12879870 + 47 NA exon (FBgn0036321, exon 1 of 1) protein_coding-exon (FBgn0036321, exon 1 of 1) 1621 FBgn0036321 FBgn0036321 FBtr0075868 CG14120 protein_coding CTCF-S2-jox2017_R1_peak_1922 chrX 12280401 12280650 + 47 NA Intergenic Intergenic -8737 FBgn0030385 FBgn0030385 FBtr0073673 Ir11a protein_coding CTCF-S2-jox2017_R1_peak_129 chr2L 9033207 9033369 + 47 NA Intergenic Intergenic -7884 FBgn0032090 FBgn0032090 FBtr0079778 CG9582 protein_coding CTCF-S2-jox2017_R1_peak_347 chr2R 2958421 2958605 + 47 NA promoter-TSS (FBgn0050299) tRNA-promoter-TSS (FBgn0050299) -175 FBgn0050299 FBgn0050299 FBtr0089058 tRNA:CR30299 tRNA CTCF-S2-jox2017_R1_peak_1100 chr3R 2750136 2750289 + 47 NA intron (FBgn0260642, intron 2 of 6) protein_coding-intron (FBgn0260642, intron 1 of 4) 8350 FBgn0260642 FBgn0260642 FBtr0081646 Antp protein_coding CTCF-S2-jox2017_R1_peak_719 chr3L 4840224 4840484 + 47 NA promoter-TSS (FBgn0035578) protein_coding-promoter-TSS (FBgn0035578) -258 FBgn0035578 FBgn0035578 FBtr0308822 CG13707 protein_coding CTCF-S2-jox2017_R1_peak_140 chr2L 9569287 9569446 + 47 NA promoter-TSS (FBgn0032130) protein_coding-promoter-TSS (FBgn0032130) -951 FBgn0032130 FBgn0032130 FBtr0079835 CG3838 protein_coding CTCF-S2-jox2017_R1_peak_1945 chrX 13803082 13803306 + 46 NA intron (FBgn0263115, intron 2 of 7) protein_coding-intron (FBgn0263115, intron 1 of 4) -46090 FBgn0030536 FBgn0030536 FBtr0073854 CG11068 protein_coding CTCF-S2-jox2017_R1_peak_879 chr3L 14191603 14191766 + 46 NA intron (FBgn0013718, intron 1 of 10) protein_coding-intron (FBgn0013718, intron 1 of 9) -4739 FBgn0052141 FBgn0052141 FBtr0075735 CG32141 protein_coding CTCF-S2-jox2017_R1_peak_988 chr3L 20326135 20326387 + 46 NA Intergenic Intergenic -9473 FBgn0036970 FBgn0036970 FBtr0331816 Spn77Bc protein_coding CTCF-S2-jox2017_R1_peak_527 chr2R 14360836 14360987 + 46 NA intron (FBgn0028496, intron 7 of 18) protein_coding-intron (FBgn0028496, intron 7 of 18) -18944 FBgn0034352 FBgn0034352 FBtr0086722 CG17669 protein_coding CTCF-S2-jox2017_R1_peak_439 chr2R 8276123 8276485 + 46 NA TTS (FBgn0033725) protein_coding-TTS (FBgn0033725) 1832 FBgn0033725 FBgn0033725 FBtr0301372 Cpr49Ac protein_coding CTCF-S2-jox2017_R1_peak_263 chr2L 18392675 18392872 + 46 NA exon (FBgn0000636, exon 8 of 8) protein_coding-exon (FBgn0000636, exon 8 of 8) 14147 FBgn0085200 FBgn0085200 FBtr0305066 CG34171 protein_coding CTCF-S2-jox2017_R1_peak_1355 chr3R 19786124 19786269 + 46 NA intron (FBgn0039132, intron 4 of 4) protein_coding-intron (FBgn0039132, intron 4 of 4) 1820 FBgn0039132 FBgn0039132 FBtr0305040 AP-1sigma protein_coding CTCF-S2-jox2017_R1_peak_815 chr3L 10392753 10393018 + 46 NA Intergenic Intergenic 12592 FBgn0264722 FBgn0264722 FBtr0334101 CR43990 ncRNA CTCF-S2-jox2017_R1_peak_1041 chr3LHet 822573 822796 + 46 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_102 chr2L 7097458 7097764 + 46 NA Intergenic Intergenic -12977 FBgn0031888 FBgn0031888 FBtr0079423 Pvf2 protein_coding CTCF-S2-jox2017_R1_peak_290 chr2L 20084760 20084942 + 46 NA exon (FBgn0263773, exon 1 of 2) protein_coding-exon (FBgn0263773, exon 1 of 2) -4655 FBgn0263773 FBgn0263773 FBtr0310558 fok protein_coding CTCF-S2-jox2017_R1_peak_1932 chrX 13022896 13023057 + 46 NA promoter-TSS (FBgn0030451) protein_coding-promoter-TSS (FBgn0030451) -77 FBgn0030451 FBgn0030451 FBtr0073723 CG15717 protein_coding CTCF-S2-jox2017_R1_peak_307 chr2L 21683657 21684007 + 46 NA promoter-TSS (FBgn0051619) protein_coding-promoter-TSS (FBgn0051619) -350 FBgn0051619 FBgn0051619 FBtr0307497 CG31619 protein_coding CTCF-S2-jox2017_R1_peak_560 chr2R 16666414 16666602 + 46 NA exon (FBgn0263850, exon 1 of 1) protein_coding-exon (FBgn0263850, exon 1 of 1) 484 FBgn0263850 FBgn0263850 FBtr0321315 CG43711 protein_coding CTCF-S2-jox2017_R1_peak_900 chr3L 15260904 15261080 + 46 NA Intergenic Intergenic -31066 FBgn0036491 FBgn0036491 FBtr0113172 Best4 protein_coding CTCF-S2-jox2017_R1_peak_639 chr2RHet 3002159 3002345 + 46 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_945 chr3L 18028271 18028459 + 45 NA intron (FBgn0000568, intron 3 of 7) protein_coding-intron (FBgn0000568, intron 1 of 5) -5052 FBgn0052192 FBgn0052192 FBtr0300047 CG32192 protein_coding CTCF-S2-jox2017_R1_peak_1415 chr3R 24459754 24459901 + 45 NA intron (FBgn0039590, intron 1 of 5) protein_coding-intron (FBgn0039590, intron 1 of 5) 958 FBgn0039590 FBgn0039590 FBtr0085319 CG10011 protein_coding CTCF-S2-jox2017_R1_peak_1210 chr3R 10656158 10656891 + 45 NA intron (FBgn0053555, intron 1 of 13) protein_coding-intron (FBgn0053555, intron 1 of 11) -14241 FBgn0038266 FBgn0038266 FBtr0082994 CG3610 protein_coding CTCF-S2-jox2017_R1_peak_926 chr3L 16904942 16905125 + 45 NA intron (FBgn0261565, intron 1 of 5) protein_coding-intron (FBgn0261565, intron 1 of 5) -11319 FBgn0036676 FBgn0036676 FBtr0075261 CG13028 protein_coding CTCF-S2-jox2017_R1_peak_1166 chr3R 6770919 6771083 + 45 NA Intergenic Intergenic -5005 FBgn0037857 FBgn0037857 FBtr0082326 Tengl4 protein_coding CTCF-S2-jox2017_R1_peak_1305 chr3R 16626331 16626520 + 45 NA intron (FBgn0038826, intron 7 of 8) protein_coding-intron (FBgn0038826, intron 11 of 11) 15498 FBgn0038827 FBgn0038827 FBtr0083995 Fancd2 protein_coding CTCF-S2-jox2017_R1_peak_378 chr2R 5118156 5118571 + 45 NA intron (FBgn0010114, intron 4 of 6) protein_coding-intron (FBgn0010114, intron 4 of 7) -6672 FBgn0033395 FBgn0033395 FBtr0088591 Cyp4p2 protein_coding CTCF-S2-jox2017_R1_peak_2014 chrX 18515541 18515783 + 45 NA exon (FBgn0262981, exon 1 of 2) protein_coding-exon (FBgn0262981, exon 1 of 2) 131 FBgn0262981 FBgn0262981 FBtr0306817 CG43289 protein_coding CTCF-S2-jox2017_R1_peak_909 chr3L 15886734 15886900 + 45 NA exon (FBgn0036542, exon 2 of 11) protein_coding-exon (FBgn0036542, exon 2 of 11) 5312 FBgn0036542 FBgn0036542 FBtr0100034 pHCl protein_coding CTCF-S2-jox2017_R1_peak_1000 chr3L 20853367 20853530 + 45 NA exon (FBgn0052432, exon 3 of 20) protein_coding-exon (FBgn0052432, exon 3 of 20) 18361 FBgn0037031 FBgn0037031 FBtr0333371 CG11456 protein_coding CTCF-S2-jox2017_R1_peak_2039 chrX 20503080 20503425 + 45 NA Intergenic Intergenic -8452 FBgn0083981 FBgn0083981 FBtr0331160 RunxA protein_coding CTCF-S2-jox2017_R1_peak_1114 chr3R 3691713 3691930 + 45 NA intron (FBgn0037525, intron 6 of 14) protein_coding-intron (FBgn0037525, intron 6 of 14) 20634 FBgn0037525 FBgn0037525 FBtr0300826 CG17816 protein_coding CTCF-S2-jox2017_R1_peak_760 chr3L 7012067 7012238 + 45 NA intron (FBgn0260660, intron 1 of 18) protein_coding-intron (FBgn0260660, intron 4 of 21) 7742 FBgn0035730 FBgn0035730 FBtr0076932 CG17744 protein_coding CTCF-S2-jox2017_R1_peak_940 chr3L 17853335 17853493 + 45 NA exon (FBgn0054002, exon 3 of 3) protein_coding-exon (FBgn0054002, exon 3 of 3) 1840 FBgn0054002 FBgn0054002 FBtr0302155 CG34002 protein_coding CTCF-S2-jox2017_R1_peak_1076 chr3R 1108647 1108797 + 45 NA exon (FBgn0013576, exon 1 of 5) protein_coding-exon (FBgn0013576, exon 1 of 5) -5165 FBgn0051538 FBgn0051538 FBtr0078819 CG31538 protein_coding CTCF-S2-jox2017_R1_peak_1741 chrUextra 28879694 28879947 + 45 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1026 chr3L 23845006 23845322 + 44 NA intron (FBgn0058470, intron 12 of 12) protein_coding-intron (FBgn0058470, intron 12 of 12) 31078 FBgn0264569 FBgn0264569 FBtr0333471 CR43941 ncRNA CTCF-S2-jox2017_R1_peak_100 chr2L 6966931 6967194 + 44 NA exon (FBgn0026170, exon 2 of 2) protein_coding-exon (FBgn0026170, exon 2 of 2) 582 FBgn0026170 FBgn0026170 FBtr0079356 smt3 protein_coding CTCF-S2-jox2017_R1_peak_353 chr2R 3537655 3537834 + 44 NA TTS (FBgn0263077) protein_coding-TTS (FBgn0263077) 3709 FBgn0028687 FBgn0028687 FBtr0088947 Rpt1 protein_coding CTCF-S2-jox2017_R1_peak_728 chr3L 5476095 5476559 + 44 NA exon (FBgn0035607, exon 2 of 2) protein_coding-exon (FBgn0035607, exon 2 of 2) 3437 FBgn0035607 FBgn0035607 FBtr0333613 CG4835 protein_coding CTCF-S2-jox2017_R1_peak_1344 chr3R 19144541 19144702 + 44 NA intron (FBgn0003118, intron 3 of 8) protein_coding-intron (FBgn0003118, intron 3 of 8) 27263 FBgn0003118 FBgn0003118 FBtr0089715 pnt protein_coding CTCF-S2-jox2017_R1_peak_648 chr3L 253061 253210 + 44 NA intron (FBgn0024806, intron 8 of 15) protein_coding-intron (FBgn0024806, intron 8 of 15) 4819 FBgn0024806 FBgn0024806 FBtr0332110 DIP2 protein_coding CTCF-S2-jox2017_R1_peak_1237 chr3R 12463042 12463236 + 44 NA exon (FBgn0262742, exon 13 of 13) protein_coding-exon (FBgn0262742, exon 13 of 13) -2788 FBgn0015520 FBgn0015520 FBtr0083335 nonA-l protein_coding CTCF-S2-jox2017_R1_peak_239 chr2L 16350166 16350430 + 44 NA promoter-TSS (FBgn0000307) protein_coding-promoter-TSS (FBgn0000307) -15 FBgn0000307 FBgn0000307 FBtr0321313 chif protein_coding CTCF-S2-jox2017_R1_peak_772 chr3L 8095397 8095629 + 44 NA exon (FBgn0262579, exon 2 of 7) protein_coding-exon (FBgn0262579, exon 2 of 7) -6719 FBgn0028379 FBgn0028379 FBtr0076683 fan protein_coding CTCF-S2-jox2017_R1_peak_1198 chr3R 9398002 9398173 + 44 NA Intergenic Intergenic -2460 FBgn0264430 FBgn0264430 FBtr0332550 CR43848 ncRNA CTCF-S2-jox2017_R1_peak_394 chr2R 6047598 6047746 + 44 NA intron (FBgn0033494, intron 1 of 16) protein_coding-intron (FBgn0033494, intron 1 of 16) -1583 FBgn0033495 FBgn0033495 FBtr0088370 CG12214 protein_coding CTCF-S2-jox2017_R1_peak_1160 chr3R 6364642 6364882 + 44 NA intron (FBgn0001235, intron 7 of 12) protein_coding-intron (FBgn0001235, intron 6 of 11) -25984 FBgn0263547 FBgn0263547 FBtr0309664 mir-4944 pre_miRNA CTCF-S2-jox2017_R1_peak_320 chr2R 217624 217830 + 44 NA intron (FBgn0260798, intron 14 of 15) protein_coding-intron (FBgn0260798, intron 13 of 14) -87283 FBgn0262117 FBgn0262117 FBtr0111269 IntS3 protein_coding CTCF-S2-jox2017_R1_peak_714 chr3L 4584343 4584517 + 44 NA intron (FBgn0260657, intron 6 of 9) protein_coding-intron (FBgn0260657, intron 4 of 7) 27157 FBgn0260657 FBgn0260657 FBtr0304988 CG42540 protein_coding CTCF-S2-jox2017_R1_peak_1930 chrX 12853897 12854100 + 44 NA exon (FBgn0052642, exon 2 of 3) protein_coding-exon (FBgn0052642, exon 2 of 3) 683 FBgn0052642 FBgn0052642 FBtr0305598 CG32642 protein_coding CTCF-S2-jox2017_R1_peak_711 chr3L 4447700 4447878 + 44 NA exon (FBgn0035545, exon 2 of 2) protein_coding-exon (FBgn0035545, exon 2 of 2) 1216 FBgn0035545 FBgn0035545 FBtr0333964 CG12607 protein_coding CTCF-S2-jox2017_R1_peak_170 chr2L 11318519 11318730 + 44 NA Intergenic Intergenic 10871 FBgn0263874 FBgn0263874 FBtr0329848 CR43721 ncRNA CTCF-S2-jox2017_R1_peak_245 chr2L 16876657 16876804 + 44 NA intron (FBgn0051781, intron 3 of 3) ncRNA-intron (FBgn0051781, intron 1 of 1) 2560 FBgn0052832 FBgn0052832 FBtr0080960 CG32832 protein_coding CTCF-S2-jox2017_R1_peak_1651 chrUextra 26370677 26370924 + 44 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1602 chrUextra 15907570 15907811 + 44 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1197 chr3R 9383358 9383503 + 44 NA Intergenic Intergenic -12324 FBgn0051337 FBgn0051337 FBtr0082790 CG31337 protein_coding CTCF-S2-jox2017_R1_peak_67 chr2L 4811748 4811917 + 44 NA Intergenic Intergenic -1177 FBgn0031630 FBgn0031630 FBtr0077383 CG15629 protein_coding CTCF-S2-jox2017_R1_peak_1672 chrUextra 28090509 28090753 + 43 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1459 chr3RHet 873657 873825 + 43 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1769 chrX 425917 426073 + 43 NA intron (FBgn0000108, intron 2 of 10) protein_coding-intron (FBgn0000108, intron 2 of 11) 1492 FBgn0000108 FBgn0000108 FBtr0307291 Appl protein_coding CTCF-S2-jox2017_R1_peak_787 chr3L 9060780 9060961 + 43 NA Intergenic Intergenic 4961 FBgn0035959 FBgn0035959 FBtr0331549 CG4911 protein_coding CTCF-S2-jox2017_R1_peak_1161 chr3R 6410049 6410216 + 43 NA TTS (FBgn0001235) protein_coding-TTS (FBgn0001235) 21260 FBgn0001235 FBgn0001235 FBtr0100455 hth protein_coding CTCF-S2-jox2017_R1_peak_676 chr3L 2719026 2719171 + 43 NA TTS (FBgn0052296) protein_coding-TTS (FBgn0052296) -7408 FBgn0264606 FBgn0264606 FBtr0333631 CG43955 protein_coding CTCF-S2-jox2017_R1_peak_1982 chrX 16456499 16456654 + 43 NA exon (FBgn0030758, exon 2 of 2) protein_coding-exon (FBgn0030758, exon 2 of 2) -2520 FBgn0011826 FBgn0011826 FBtr0074294 Pp2B-14D protein_coding CTCF-S2-jox2017_R1_peak_1102 chr3R 2796367 2796552 + 43 NA intron (FBgn0260642, intron 1 of 6) protein_coding-intron (FBgn0260642, intron 1 of 6) -37897 FBgn0260642 FBgn0260642 FBtr0081646 Antp protein_coding CTCF-S2-jox2017_R1_peak_641 chr2RHet 3058627 3059007 + 43 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_541 chr2R 14951325 14951478 + 43 NA Intergenic Intergenic -3259 FBgn0004168 FBgn0004168 FBtr0086577 5-HT1A protein_coding CTCF-S2-jox2017_R1_peak_211 chr2L 13732350 13732626 + 43 NA Intergenic Intergenic -3652 FBgn0051813 FBgn0051813 FBtr0080531 CG31813 protein_coding CTCF-S2-jox2017_R1_peak_1016 chr3L 22825924 22826461 + 43 NA exon (FBgn0027339, exon 2 of 7) protein_coding-exon (FBgn0027339, exon 2 of 7) 296 FBgn0027339 FBgn0027339 FBtr0100184 jim protein_coding CTCF-S2-jox2017_R1_peak_275 chr2L 19260425 19260823 + 43 NA exon (FBgn0051797, exon 2 of 2) protein_coding-exon (FBgn0051797, exon 2 of 2) 2269 FBgn0051797 FBgn0051797 FBtr0081227 CG31797 protein_coding CTCF-S2-jox2017_R1_peak_924 chr3L 16877353 16877505 + 43 NA intron (FBgn0261565, intron 3 of 9) protein_coding-intron (FBgn0261565, intron 3 of 9) -2777 FBgn0261565 FBgn0261565 FBtr0302784 Lmpt protein_coding CTCF-S2-jox2017_R1_peak_2023 chrX 19155089 19155467 + 43 NA promoter-TSS (FBgn0040068) protein_coding-promoter-TSS (FBgn0040068) -19 FBgn0031006 FBgn0031006 FBtr0074689 rictor protein_coding CTCF-S2-jox2017_R1_peak_1609 chrUextra 18018545 18018843 + 43 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_418 chr2R 7296499 7296731 + 43 NA TTS (FBgn0054054) protein_coding-TTS (FBgn0054054) 329 FBgn0050026 FBgn0050026 FBtr0300922 CG30026 protein_coding CTCF-S2-jox2017_R1_peak_62 chr2L 4530221 4530428 + 43 NA intron (FBgn0053196, intron 21 of 66) protein_coding-intron (FBgn0053196, intron 21 of 46) 47877 FBgn0031613 FBgn0031613 FBtr0077444 HP6 protein_coding CTCF-S2-jox2017_R1_peak_1514 chrU 1192895 1193217 + 43 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_546 chr2R 15455916 15456242 + 43 NA intron (FBgn0003435, intron 5 of 10) protein_coding-intron (FBgn0003435, intron 5 of 9) -2407 FBgn0003435 FBgn0003435 FBtr0301610 sm protein_coding CTCF-S2-jox2017_R1_peak_382 chr2R 5409429 5409731 + 43 NA intron (FBgn0259246, intron 1 of 13) protein_coding-intron (FBgn0259246, intron 8 of 21) 18287 FBgn0259246 FBgn0259246 FBtr0305059 brp protein_coding CTCF-S2-jox2017_R1_peak_980 chr3L 20150384 20150538 + 43 NA intron (FBgn0261556, intron 5 of 15) protein_coding-intron (FBgn0261556, intron 5 of 14) -16754 FBgn0036942 FBgn0036942 FBtr0074864 CG7328 protein_coding CTCF-S2-jox2017_R1_peak_1168 chr3R 7009016 7009229 + 42 NA Intergenic Intergenic 7871 FBgn0040252 FBgn0040252 FBtr0082340 Ugt86Dh protein_coding CTCF-S2-jox2017_R1_peak_94 chr2L 6587205 6587377 + 42 NA intron (FBgn0031835, intron 1 of 15) protein_coding-intron (FBgn0031835, intron 1 of 15) 13775 FBgn0031835 FBgn0031835 FBtr0089641 CG11319 protein_coding CTCF-S2-jox2017_R1_peak_539 chr2R 14891954 14892168 + 42 NA intron (FBgn0034412, intron 7 of 12) protein_coding-intron (FBgn0034412, intron 7 of 12) 9860 FBgn0263473 FBgn0263473 FBtr0309772 snoRNA:abba-a snoRNA CTCF-S2-jox2017_R1_peak_1500 chr4 947030 947181 + 42 NA exon (FBgn0023213, exon 4 of 16) protein_coding-exon (FBgn0023213, exon 4 of 16) 4242 FBgn0023213 FBgn0023213 FBtr0289951 eIF4G protein_coding CTCF-S2-jox2017_R1_peak_856 chr3L 12373838 12373983 + 42 NA intron (FBgn0036279, intron 1 of 18) protein_coding-intron (FBgn0036279, intron 1 of 16) 10634 FBgn0036279 FBgn0036279 FBtr0333841 Ncc69 protein_coding CTCF-S2-jox2017_R1_peak_1187 chr3R 8432425 8432570 + 42 NA Intergenic Intergenic 20939 FBgn0005671 FBgn0005671 FBtr0301661 Vha55 protein_coding CTCF-S2-jox2017_R1_peak_30 chr2L 2099023 2099222 + 42 NA intron (FBgn0053516, intron 1 of 7) protein_coding-intron (FBgn0053516, intron 1 of 7) 10756 FBgn0053516 FBgn0053516 FBtr0300671 dpr3 protein_coding CTCF-S2-jox2017_R1_peak_1773 chrX 737417 737940 + 42 NA intron (FBgn0264449, intron 3 of 12) protein_coding-intron (FBgn0264449, intron 3 of 11) -1178 FBgn0029535 FBgn0029535 FBtr0070142 CG14635 protein_coding CTCF-S2-jox2017_R1_peak_2017 chrX 18598082 18598228 + 42 NA Intergenic Intergenic -5743 FBgn0030949 FBgn0030949 FBtr0074604 Cyp308a1 protein_coding CTCF-S2-jox2017_R1_peak_724 chr3L 5195055 5195210 + 42 NA promoter-TSS (FBgn0052423) protein_coding-promoter-TSS (FBgn0052423) -17235 FBgn0052423 FBgn0052423 FBtr0301599 shep protein_coding CTCF-S2-jox2017_R1_peak_61 chr2L 4458793 4458941 + 42 NA promoter-TSS (FBgn0031608) protein_coding-promoter-TSS (FBgn0031608) -597 FBgn0261606 FBgn0261606 FBtr0303765 RpL27A protein_coding CTCF-S2-jox2017_R1_peak_688 chr3L 3490253 3490406 + 42 NA intron (FBgn0259224, intron 2 of 3) protein_coding-intron (FBgn0259224, intron 2 of 3) -5676 FBgn0262484 FBgn0262484 FBtr0304829 CG43074 protein_coding CTCF-S2-jox2017_R1_peak_1042 chr3LHet 1046282 1046470 + 42 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_845 chr3L 11846098 11846375 + 42 NA intron (FBgn0085449, intron 2 of 2) protein_coding-intron (FBgn0085449, intron 2 of 2) -5333 FBgn0040816 FBgn0040816 FBtr0076074 CG12521 protein_coding CTCF-S2-jox2017_R1_peak_1442 chr3R 26615156 26615361 + 42 NA TTS (FBgn0011739) protein_coding-TTS (FBgn0011739) 2122 FBgn0262444 FBgn0262444 FBtr0304453 mir-1013 pre_miRNA CTCF-S2-jox2017_R1_peak_1283 chr3R 14982577 14982744 + 42 NA promoter-TSS (FBgn0002962) protein_coding-promoter-TSS (FBgn0002962) 79 FBgn0038683 FBgn0038683 FBtr0083749 CG11779 protein_coding CTCF-S2-jox2017_R1_peak_338 chr2R 2154021 2154168 + 42 NA Intergenic Intergenic 21053 FBgn0033075 FBgn0033075 FBtr0114492 Pld protein_coding CTCF-S2-jox2017_R1_peak_1993 chrX 17473883 17474064 + 42 NA promoter-TSS (FBgn0030847) protein_coding-promoter-TSS (FBgn0030847) -3839 FBgn0028343 FBgn0028343 FBtr0301415 l(1)G0222 protein_coding CTCF-S2-jox2017_R1_peak_1626 chrUextra 22840194 22840437 + 42 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1693 chrUextra 28583071 28583239 + 42 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_766 chr3L 7593988 7594134 + 42 NA intron (FBgn0035802, intron 1 of 16) protein_coding-intron (FBgn0035802, intron 1 of 16) 3731 FBgn0035802 FBgn0035802 FBtr0089851 CG33275 protein_coding CTCF-S2-jox2017_R1_peak_1501 chr4 1101744 1101892 + 42 NA exon (FBgn0024913, exon 3 of 6) protein_coding-exon (FBgn0024913, exon 3 of 6) 3600 FBgn0024913 FBgn0024913 FBtr0089209 Actbeta protein_coding CTCF-S2-jox2017_R1_peak_1334 chr3R 18320538 18320700 + 42 NA Intergenic Intergenic 1888 FBgn0038979 FBgn0038979 FBtr0084259 CG7046 protein_coding CTCF-S2-jox2017_R1_peak_32 chr2L 2156739 2156884 + 42 NA TTS (FBgn0031393) protein_coding-TTS (FBgn0031393) 1051 FBgn0031393 FBgn0031393 FBtr0077832 CG15382 protein_coding CTCF-S2-jox2017_R1_peak_389 chr2R 5929089 5929292 + 41 NA exon (FBgn0085249, exon 2 of 2) protein_coding-exon (FBgn0085249, exon 2 of 2) 1805 FBgn0085249 FBgn0085249 FBtr0112413 CG34220 protein_coding CTCF-S2-jox2017_R1_peak_2034 chrX 20223587 20223759 + 41 NA Intergenic Intergenic 23876 FBgn0031103 FBgn0031103 FBtr0077332 CG12679 protein_coding CTCF-S2-jox2017_R1_peak_557 chr2R 16557989 16558185 + 41 NA promoter-TSS (FBgn0034543) protein_coding-promoter-TSS (FBgn0034543) 210 FBgn0000615 FBgn0000615 FBtr0086243 exu protein_coding CTCF-S2-jox2017_R1_peak_1758 chrUextra 28953174 28953423 + 41 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1615 chrUextra 19267845 19268080 + 41 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_912 chr3L 16058330 16058478 + 41 NA exon (FBgn0005536, exon 8 of 17) protein_coding-exon (FBgn0005536, exon 8 of 17) 13345 FBgn0005536 FBgn0005536 FBtr0075441 Mbs protein_coding CTCF-S2-jox2017_R1_peak_775 chr3L 8374879 8375035 + 41 NA intron (FBgn0001253, intron 4 of 6) protein_coding-intron (FBgn0001253, intron 4 of 6) 9452 FBgn0001253 FBgn0001253 FBtr0076607 ImpE1 protein_coding CTCF-S2-jox2017_R1_peak_145 chr2L 9722941 9723105 + 41 NA intron (FBgn0028704, intron 4 of 8) protein_coding-intron (FBgn0028704, intron 4 of 7) -6917 FBgn0032139 FBgn0032139 FBtr0079863 CG13116 protein_coding CTCF-S2-jox2017_R1_peak_315 chr2L 22699962 22700277 + 41 NA Intergenic Intergenic -9111 FBgn0058439 FBgn0058439 FBtr0111233 CG40439 protein_coding CTCF-S2-jox2017_R1_peak_983 chr3L 20185084 20185240 + 41 NA exon (FBgn0261556, exon 2 of 15) protein_coding-exon (FBgn0261556, exon 2 of 15) 3540 FBgn0036945 FBgn0036945 FBtr0074821 CG6981 protein_coding CTCF-S2-jox2017_R1_peak_1439 chr3R 26372840 26372994 + 41 NA intron (FBgn0082582, intron 1 of 7) protein_coding-intron (FBgn0082582, intron 2 of 7) 789 FBgn0082582 FBgn0082582 FBtr0085663 tmod protein_coding CTCF-S2-jox2017_R1_peak_184 chr2L 12091280 12091462 + 41 NA Intergenic Intergenic -2400 FBgn0032407 FBgn0032407 FBtr0080327 Pex19 protein_coding CTCF-S2-jox2017_R1_peak_1766 chrUextra 28997198 28997451 + 41 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_773 chr3L 8317103 8317344 + 41 NA Intergenic Intergenic -1736 FBgn0250833 FBgn0250833 FBtr0112767 CG34461 protein_coding CTCF-S2-jox2017_R1_peak_1294 chr3R 15812691 15812838 + 41 NA intron (FBgn0038755, intron 2 of 5) protein_coding-intron (FBgn0038755, intron 2 of 5) 13529 FBgn0051213 FBgn0051213 FBtr0083824 CG31213 protein_coding CTCF-S2-jox2017_R1_peak_202 chr2L 12962163 12962309 + 41 NA Intergenic Intergenic -4513 FBgn0032462 FBgn0032462 FBtr0273445 CG16800 protein_coding CTCF-S2-jox2017_R1_peak_1136 chr3R 5276468 5276790 + 41 NA Intergenic Intergenic 5639 FBgn0037696 FBgn0037696 FBtr0082044 CG9362 protein_coding CTCF-S2-jox2017_R1_peak_873 chr3L 13865079 13865663 + 41 NA exon (FBgn0264006, exon 17 of 17) protein_coding-exon (FBgn0264006, exon 17 of 17) -5366 FBgn0036381 FBgn0036381 FBtr0075801 CG8745 protein_coding CTCF-S2-jox2017_R1_peak_1579 chrUextra 10087126 10087272 + 41 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1829 chrX 4710116 4710483 + 41 NA Intergenic Intergenic -9708 FBgn0029729 FBgn0029729 FBtr0070716 CG12682 protein_coding CTCF-S2-jox2017_R1_peak_1118 chr3R 4183422 4183567 + 41 NA promoter-TSS (FBgn0020249) protein_coding-promoter-TSS (FBgn0020249) 805 FBgn0020249 FBgn0020249 FBtr0081846 stck protein_coding CTCF-S2-jox2017_R1_peak_614 chr2R 20560675 20560826 + 41 NA exon (FBgn0035049, exon 6 of 7) protein_coding-exon (FBgn0035049, exon 6 of 7) 3849 FBgn0035047 FBgn0035047 FBtr0072328 Pof protein_coding CTCF-S2-jox2017_R1_peak_381 chr2R 5406648 5407082 + 41 NA intron (FBgn0259246, intron 1 of 13) protein_coding-intron (FBgn0259246, intron 8 of 21) 15572 FBgn0259246 FBgn0259246 FBtr0305059 brp protein_coding CTCF-S2-jox2017_R1_peak_963 chr3L 18907536 18907725 + 41 NA promoter-TSS (FBgn0036830) protein_coding-promoter-TSS (FBgn0036830) -380 FBgn0036830 FBgn0036830 FBtr0309797 CG14077 protein_coding CTCF-S2-jox2017_R1_peak_1796 chrX 2688960 2689227 + 41 NA intron (FBgn0003996, intron 1 of 5) protein_coding-intron (FBgn0003996, intron 1 of 5) 1406 FBgn0003996 FBgn0003996 FBtr0070490 w protein_coding CTCF-S2-jox2017_R1_peak_135 chr2L 9520827 9521026 + 41 NA promoter-TSS (FBgn0032123) protein_coding-promoter-TSS (FBgn0032123) -288 FBgn0032123 FBgn0032123 FBtr0079828 Oatp30B protein_coding CTCF-S2-jox2017_R1_peak_994 chr3L 20577427 20577596 + 41 NA Intergenic Intergenic 36248 FBgn0001323 FBgn0001323 FBtr0078212 knrl protein_coding CTCF-S2-jox2017_R1_peak_453 chr2R 9304171 9304321 + 41 NA exon (FBgn0259221, exon 10 of 11) protein_coding-exon (FBgn0259221, exon 10 of 11) -2127 FBgn0260475 FBgn0260475 FBtr0087715 CG30059 protein_coding CTCF-S2-jox2017_R1_peak_1306 chr3R 16627746 16627911 + 41 NA intron (FBgn0038826, intron 7 of 8) protein_coding-intron (FBgn0038826, intron 11 of 11) 14095 FBgn0038827 FBgn0038827 FBtr0083995 Fancd2 protein_coding CTCF-S2-jox2017_R1_peak_625 chr2RHet 116242 116664 + 41 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1357 chr3R 20006657 20006894 + 41 NA exon (FBgn0039161, exon 4 of 4) protein_coding-exon (FBgn0039161, exon 4 of 4) -5312 FBgn0029503 FBgn0029503 FBtr0084554 CHORD protein_coding CTCF-S2-jox2017_R1_peak_581 chr2R 17771892 17772085 + 41 NA intron (FBgn0085397, intron 1 of 6) protein_coding-intron (FBgn0085397, intron 1 of 4) 1171 FBgn0085397 FBgn0085397 FBtr0330338 Fili protein_coding CTCF-S2-jox2017_R1_peak_177 chr2L 11878901 11879115 + 41 NA intron (FBgn0259225, intron 3 of 9) protein_coding-intron (FBgn0259225, intron 3 of 9) 25578 FBgn0261805 FBgn0261805 FBtr0303281 CG42751 protein_coding CTCF-S2-jox2017_R1_peak_736 chr3L 5809188 5809475 + 40 NA intron (FBgn0003984, intron 5 of 5) protein_coding-intron (FBgn0003984, intron 5 of 5) -3138 FBgn0035640 FBgn0035640 FBtr0077113 mad2 protein_coding CTCF-S2-jox2017_R1_peak_130 chr2L 9134980 9135125 + 40 NA intron (FBgn0052982, intron 2 of 6) protein_coding-intron (FBgn0052982, intron 2 of 8) 9316 FBgn0052982 FBgn0052982 FBtr0110960 CG32982 protein_coding CTCF-S2-jox2017_R1_peak_1929 chrX 12716647 12716800 + 40 NA intron (FBgn0259171, intron 3 of 9) protein_coding-intron (FBgn0259171, intron 3 of 9) 21029 FBgn0030425 FBgn0030425 FBtr0305591 CG3775 protein_coding CTCF-S2-jox2017_R1_peak_1060 chr3R 113088 113333 + 40 NA intron (FBgn0041605, intron 4 of 7) protein_coding-intron (FBgn0041605, intron 3 of 6) -4460 FBgn0041605 FBgn0041605 FBtr0100499 cpx protein_coding CTCF-S2-jox2017_R1_peak_227 chr2L 15060854 15061143 + 40 NA promoter-TSS (FBgn0010422) protein_coding-promoter-TSS (FBgn0010422) -241 FBgn0010422 FBgn0010422 FBtr0080722 TfIIS protein_coding CTCF-S2-jox2017_R1_peak_1432 chr3R 25804610 25804774 + 40 NA Intergenic Intergenic -4482 FBgn0039728 FBgn0039728 FBtr0085545 CG7896 protein_coding CTCF-S2-jox2017_R1_peak_1165 chr3R 6516658 6516972 + 40 NA TTS (FBgn0262717) protein_coding-TTS (FBgn0262717) 4150 FBgn0262717 FBgn0262717 FBtr0305663 Skeletor protein_coding CTCF-S2-jox2017_R1_peak_1124 chr3R 4658649 4658839 + 40 NA TTS (FBgn0262614) protein_coding-TTS (FBgn0262614) 8612 FBgn0037638 FBgn0037638 FBtr0081922 CG8379 protein_coding CTCF-S2-jox2017_R1_peak_354 chr2R 3828008 3828207 + 40 NA promoter-TSS (FBgn0050380) protein_coding-promoter-TSS (FBgn0050380) 646 FBgn0050379 FBgn0050379 FBtr0305125 CG30379 protein_coding CTCF-S2-jox2017_R1_peak_767 chr3L 7594675 7594830 + 40 NA intron (FBgn0035802, intron 1 of 16) protein_coding-intron (FBgn0035802, intron 1 of 16) 4422 FBgn0035802 FBgn0035802 FBtr0089851 CG33275 protein_coding CTCF-S2-jox2017_R1_peak_334 chr2R 1839284 1839499 + 40 NA Intergenic Intergenic -5969 FBgn0033047 FBgn0033047 FBtr0085966 CG7882 protein_coding CTCF-S2-jox2017_R1_peak_1554 chrUextra 4202885 4203132 + 40 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1569 chrUextra 7470337 7470679 + 40 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_12 chr2L 523190 523336 + 40 NA promoter-TSS (FBgn0003963) protein_coding-promoter-TSS (FBgn0003963) 19317 FBgn0010602 FBgn0010602 FBtr0310029 lwr protein_coding CTCF-S2-jox2017_R1_peak_532 chr2R 14522461 14522612 + 40 NA promoter-TSS (FBgn0050122) protein_coding-promoter-TSS (FBgn0050122) -73 FBgn0050122 FBgn0050122 FBtr0300925 CG30122 protein_coding CTCF-S2-jox2017_R1_peak_45 chr2L 3480584 3480760 + 40 NA TTS (FBgn0031542) protein_coding-TTS (FBgn0031542) 2238 FBgn0261560 FBgn0261560 FBtr0077524 Thor protein_coding CTCF-S2-jox2017_R1_peak_219 chr2L 14211480 14211625 + 40 NA intron (FBgn0016930, intron 4 of 10) protein_coding-intron (FBgn0016930, intron 3 of 9) 22570 FBgn0016930 FBgn0016930 FBtr0329933 smi35A protein_coding CTCF-S2-jox2017_R1_peak_2021 chrX 18820944 18821091 + 40 NA Intergenic Intergenic -3351 FBgn0264090 FBgn0264090 FBtr0331157 CG43759 protein_coding CTCF-S2-jox2017_R1_peak_1837 chrX 5137876 5138039 + 40 NA exon (FBgn0086911, exon 20 of 26) protein_coding-exon (FBgn0086911, exon 20 of 26) -52170 FBgn0261803 FBgn0261803 FBtr0303279 CG42749 protein_coding CTCF-S2-jox2017_R1_peak_559 chr2R 16664653 16664943 + 40 NA promoter-TSS (FBgn0263848) protein_coding-promoter-TSS (FBgn0263848) 456 FBgn0263849 FBgn0263849 FBtr0321316 CG43710 protein_coding CTCF-S2-jox2017_R1_peak_1304 chr3R 16618233 16618383 + 40 NA intron (FBgn0038826, intron 1 of 8) protein_coding-intron (FBgn0038826, intron 5 of 11) -19985 FBgn0046689 FBgn0046689 FBtr0083996 Takl1 protein_coding CTCF-S2-jox2017_R1_peak_1436 chr3R 26035116 26035262 + 40 NA promoter-TSS (FBgn0000094) protein_coding-promoter-TSS (FBgn0000094) -447 FBgn0039757 FBgn0039757 FBtr0089424 RpS7 protein_coding CTCF-S2-jox2017_R1_peak_1661 chrUextra 27315955 27316203 + 39 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1856 chrX 6435210 6435596 + 39 NA intron (FBgn0085446, intron 1 of 9) protein_coding-intron (FBgn0085446, intron 1 of 3) 7360 FBgn0000524 FBgn0000524 FBtr0070914 dx protein_coding CTCF-S2-jox2017_R1_peak_1332 chr3R 17924634 17924787 + 39 NA intron (FBgn0038930, intron 1 of 2) protein_coding-intron (FBgn0038930, intron 1 of 2) -4426 FBgn0038931 FBgn0038931 FBtr0084181 CG13407 protein_coding CTCF-S2-jox2017_R1_peak_497 chr2R 11674002 11674171 + 39 NA intron (FBgn0083919, intron 2 of 15) protein_coding-intron (FBgn0083919, intron 2 of 15) 28364 FBgn0083919 FBgn0083919 FBtr0329910 Zasp52 protein_coding CTCF-S2-jox2017_R1_peak_1348 chr3R 19348676 19348827 + 39 NA exon (FBgn0039084, exon 8 of 8) protein_coding-exon (FBgn0039084, exon 8 of 8) -1446 FBgn0039083 FBgn0039083 FBtr0084424 CG10177 protein_coding CTCF-S2-jox2017_R1_peak_985 chr3L 20302087 20302238 + 39 NA promoter-TSS (FBgn0003124) protein_coding-promoter-TSS (FBgn0003124) -985 FBgn0003124 FBgn0003124 FBtr0100318 polo protein_coding CTCF-S2-jox2017_R1_peak_708 chr3L 4275152 4275343 + 39 NA exon (FBgn0035522, exon 6 of 6) protein_coding-exon (FBgn0035522, exon 6 of 6) -2715 FBgn0035523 FBgn0035523 FBtr0333566 CG1311 protein_coding CTCF-S2-jox2017_R1_peak_358 chr2R 4125195 4125404 + 39 NA promoter-TSS (FBgn0013726) protein_coding-promoter-TSS (FBgn0013726) -65 FBgn0013726 FBgn0013726 FBtr0088793 pnut protein_coding CTCF-S2-jox2017_R1_peak_340 chr2R 2390759 2390908 + 39 NA exon (FBgn0086655, exon 1 of 3) protein_coding-exon (FBgn0086655, exon 1 of 3) 30267 FBgn0264506 FBgn0264506 FBtr0332951 CR43905 ncRNA CTCF-S2-jox2017_R1_peak_1300 chr3R 16068049 16068194 + 39 NA intron (FBgn0083975, intron 13 of 13) protein_coding-intron (FBgn0083975, intron 13 of 13) -32608 FBgn0038775 FBgn0038775 FBtr0083874 CG17199 protein_coding CTCF-S2-jox2017_R1_peak_1659 chrUextra 27225160 27225524 + 39 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1968 chrX 15297023 15297198 + 39 NA intron (FBgn0263257, intron 3 of 17) protein_coding-intron (FBgn0263257, intron 1 of 14) 1388 FBgn0263257 FBgn0263257 FBtr0308310 cngl protein_coding CTCF-S2-jox2017_R1_peak_1956 chrX 14848059 14848231 + 39 NA TTS (FBgn0030599) protein_coding-TTS (FBgn0030599) 988 FBgn0030599 FBgn0030599 FBtr0303295 CG9030 protein_coding CTCF-S2-jox2017_R1_peak_1927 chrX 12646083 12646228 + 39 NA Intergenic Intergenic 5805 FBgn0030418 FBgn0030418 FBtr0333722 CG4004 protein_coding CTCF-S2-jox2017_R1_peak_125 chr2L 8259219 8259365 + 39 NA promoter-TSS (FBgn0262374) pre_miRNA-promoter-TSS (FBgn0262374) -647 FBgn0262374 FBgn0262374 FBtr0304202 mir-2b-1 pre_miRNA CTCF-S2-jox2017_R1_peak_733 chr3L 5662383 5662643 + 39 NA TTS (FBgn0085447) protein_coding-TTS (FBgn0085447) -7166 FBgn0035627 FBgn0035627 FBtr0077125 Sse protein_coding CTCF-S2-jox2017_R1_peak_1394 chr3R 22280549 22280714 + 39 NA promoter-TSS (FBgn0262577) protein_coding-promoter-TSS (FBgn0262577) 96 FBgn0262577 FBgn0262577 FBtr0305048 CG43117 protein_coding CTCF-S2-jox2017_R1_peak_987 chr3L 20319376 20319625 + 39 NA Intergenic Intergenic -3191 FBgn0036972 FBgn0036972 FBtr0074844 CG6434 protein_coding CTCF-S2-jox2017_R1_peak_430 chr2R 7692763 7692925 + 39 NA intron (FBgn0033652, intron 2 of 3) protein_coding-intron (FBgn0033652, intron 2 of 3) 14970 FBgn0033652 FBgn0033652 FBtr0088030 ths protein_coding CTCF-S2-jox2017_R1_peak_547 chr2R 15461317 15461499 + 39 NA intron (FBgn0003435, intron 5 of 10) protein_coding-intron (FBgn0003435, intron 5 of 9) -7736 FBgn0003435 FBgn0003435 FBtr0301610 sm protein_coding CTCF-S2-jox2017_R1_peak_249 chr2L 17243233 17243430 + 39 NA intron (FBgn0032629, intron 2 of 6) protein_coding-intron (FBgn0032629, intron 2 of 5) 3972 FBgn0040987 FBgn0040987 FBtr0304947 CG15139 protein_coding CTCF-S2-jox2017_R1_peak_1664 chrUextra 27370442 27370687 + 39 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1696 chrUextra 28604047 28604305 + 39 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1021 chr3L 22980937 22981157 + 39 NA exon (FBgn0052457, exon 1 of 1) protein_coding-exon (FBgn0052457, exon 1 of 1) 305 FBgn0052457 FBgn0052457 FBtr0300620 CG32457 protein_coding CTCF-S2-jox2017_R1_peak_411 chr2R 6810638 6810834 + 38 NA Intergenic Intergenic 13308 FBgn0033573 FBgn0033573 FBtr0088200 Obp47a protein_coding CTCF-S2-jox2017_R1_peak_788 chr3L 9156967 9157157 + 38 NA intron (FBgn0004244, intron 4 of 9) protein_coding-intron (FBgn0004244, intron 3 of 8) 18187 FBgn0004244 FBgn0004244 FBtr0309054 Rdl protein_coding CTCF-S2-jox2017_R1_peak_1109 chr3R 3284326 3284475 + 38 NA Intergenic Intergenic 6618 FBgn0011998 FBgn0011998 FBtr0081536 tRNA:V3b:84Da tRNA CTCF-S2-jox2017_R1_peak_1720 chrUextra 28771241 28771387 + 38 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1560 chrUextra 6550298 6550540 + 38 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_669 chr3L 2128411 2128580 + 38 NA exon (FBgn0052311, exon 16 of 20) protein_coding-exon (FBgn0052311, exon 16 of 20) -12884 FBgn0086906 FBgn0086906 FBtr0072848 sls protein_coding CTCF-S2-jox2017_R1_peak_680 chr3L 2867800 2868050 + 38 NA intron (FBgn0263392, intron 3 of 10) protein_coding-intron (FBgn0263392, intron 3 of 9) 11233 FBgn0263392 FBgn0263392 FBtr0309119 CG43444 protein_coding CTCF-S2-jox2017_R1_peak_255 chr2L 17864460 17864605 + 38 NA exon (FBgn0262018, exon 2 of 15) protein_coding-exon (FBgn0262018, exon 2 of 15) 10715 FBgn0262018 FBgn0262018 FBtr0303836 CadN2 protein_coding CTCF-S2-jox2017_R1_peak_627 chr2RHet 148726 148896 + 38 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_689 chr3L 3567104 3567252 + 38 NA intron (FBgn0005640, intron 2 of 10) protein_coding-intron (FBgn0005640, intron 2 of 10) -26645 FBgn0053504 FBgn0053504 FBtr0100848 snRNA:U7 snRNA CTCF-S2-jox2017_R1_peak_687 chr3L 3394349 3394494 + 38 NA Intergenic Intergenic 16153 FBgn0035445 FBgn0035445 FBtr0073077 CG12014 protein_coding CTCF-S2-jox2017_R1_peak_1937 chrX 13295431 13295576 + 38 NA TTS (FBgn0030482) protein_coding-TTS (FBgn0030482) 1393 FBgn0030483 FBgn0030483 FBtr0073788 CG12725 protein_coding CTCF-S2-jox2017_R1_peak_799 chr3L 9658311 9658647 + 38 NA intron (FBgn0016081, intron 6 of 27) protein_coding-intron (FBgn0016081, intron 6 of 26) 13724 FBgn0016081 FBgn0016081 FBtr0333858 fry protein_coding CTCF-S2-jox2017_R1_peak_1428 chr3R 25517822 25517974 + 38 NA promoter-TSS (FBgn0039683) protein_coding-promoter-TSS (FBgn0039683) -415 FBgn0039683 FBgn0039683 FBtr0085454 dmrt99B protein_coding CTCF-S2-jox2017_R1_peak_569 chr2R 17100074 17100219 + 38 NA TTS (FBgn0027073) protein_coding-TTS (FBgn0027073) 2331 FBgn0027073 FBgn0027073 FBtr0071625 CG4302 protein_coding CTCF-S2-jox2017_R1_peak_1532 chrU 4024161 4024323 + 38 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1718 chrUextra 28743198 28743575 + 38 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1010 chr3L 21861164 21861330 + 38 NA intron (FBgn0262737, intron 1 of 10) protein_coding-intron (FBgn0262737, intron 1 of 9) -13982 FBgn0052449 FBgn0052449 FBtr0078490 tRNA:CR32449 tRNA CTCF-S2-jox2017_R1_peak_746 chr3L 6590465 6590645 + 38 NA exon (FBgn0002926, exon 7 of 15) protein_coding-exon (FBgn0002926, exon 7 of 15) 5911 FBgn0002926 FBgn0002926 FBtr0076984 ndl protein_coding CTCF-S2-jox2017_R1_peak_972 chr3L 19305838 19306059 + 38 NA intron (FBgn0003089, intron 3 of 4) protein_coding-intron (FBgn0003089, intron 3 of 5) 18081 FBgn0028380 FBgn0028380 FBtr0321324 fal protein_coding CTCF-S2-jox2017_R1_peak_414 chr2R 6984058 6984216 + 38 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -9993 FBgn0262818 FBgn0262818 FBtr0306050 CG43189 protein_coding CTCF-S2-jox2017_R1_peak_2049 chrX 21228951 21229374 + 38 NA promoter-TSS (FBgn0011710) protein_coding-promoter-TSS (FBgn0011710) -141 FBgn0011710 FBgn0011710 FBtr0077198 Sep1 protein_coding CTCF-S2-jox2017_R1_peak_1426 chr3R 25414772 25414948 + 38 NA TTS (FBgn0051041) protein_coding-TTS (FBgn0051041) 624 FBgn0039671 FBgn0039671 FBtr0085471 CG11470 protein_coding CTCF-S2-jox2017_R1_peak_1381 chr3R 21426438 21426610 + 38 NA exon (FBgn0011666, exon 7 of 7) protein_coding-exon (FBgn0011666, exon 7 of 7) 8325 FBgn0261287 FBgn0261287 FBtr0084895 ymp protein_coding CTCF-S2-jox2017_R1_peak_1951 chrX 14772314 14772574 + 38 NA exon (FBgn0030591, exon 2 of 3) protein_coding-exon (FBgn0030591, exon 2 of 3) 4174 FBgn0030591 FBgn0030591 FBtr0073982 CG9517 protein_coding CTCF-S2-jox2017_R1_peak_1003 chr3L 21057171 21057338 + 38 NA exon (FBgn0026179, exon 2 of 7) protein_coding-exon (FBgn0026179, exon 2 of 7) -1698 FBgn0262482 FBgn0262482 FBtr0304821 CG43072 protein_coding CTCF-S2-jox2017_R1_peak_626 chr2RHet 118253 118412 + 38 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_986 chr3L 20313013 20313462 + 38 NA promoter-TSS (FBgn0036969) protein_coding-promoter-TSS (FBgn0036969) -815 FBgn0036969 FBgn0036969 FBtr0074843 Spn77Bb protein_coding CTCF-S2-jox2017_R1_peak_646 chr2RHet 3233216 3233411 + 38 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_401 chr2R 6328839 6329068 + 37 NA intron (FBgn0001122, intron 1 of 6) protein_coding-intron (FBgn0001122, intron 2 of 7) -4060 FBgn0033523 FBgn0033523 FBtr0088314 CG12895 protein_coding CTCF-S2-jox2017_R1_peak_811 chr3L 10247608 10247811 + 37 NA Intergenic Intergenic -9903 FBgn0036078 FBgn0036078 FBtr0076300 Or67c protein_coding CTCF-S2-jox2017_R1_peak_1646 chrUextra 25862224 25862599 + 37 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_110 chr2L 7599234 7599379 + 37 NA Intergenic Intergenic -6294 FBgn0031925 FBgn0031925 FBtr0079471 Cyp4d21 protein_coding CTCF-S2-jox2017_R1_peak_957 chr3L 18727067 18727295 + 37 NA Intergenic Intergenic 10274 FBgn0264717 FBgn0264717 FBtr0334051 CR43985 ncRNA CTCF-S2-jox2017_R1_peak_438 chr2R 8190135 8190289 + 37 NA promoter-TSS (FBgn0033708) protein_coding-promoter-TSS (FBgn0033708) -471 FBgn0033708 FBgn0033708 FBtr0087972 CG8850 protein_coding CTCF-S2-jox2017_R1_peak_1847 chrX 5641071 5641229 + 37 NA promoter-TSS (FBgn0029798) protein_coding-promoter-TSS (FBgn0029798) 137 FBgn0261383 FBgn0261383 FBtr0070842 IntS6 protein_coding CTCF-S2-jox2017_R1_peak_1378 chr3R 21230005 21230150 + 37 NA intron (FBgn0004509, intron 4 of 5) protein_coding-intron (FBgn0004509, intron 3 of 11) -3710 FBgn0051439 FBgn0051439 FBtr0084845 Muc96D protein_coding CTCF-S2-jox2017_R1_peak_649 chr3L 342874 343105 + 37 NA promoter-TSS (FBgn0035132) protein_coding-promoter-TSS (FBgn0035132) -74 FBgn0035132 FBgn0035132 FBtr0072572 mthl10 protein_coding CTCF-S2-jox2017_R1_peak_303 chr2L 21250833 21251111 + 37 NA intron (FBgn0261239, intron 2 of 7) protein_coding-intron (FBgn0261239, intron 2 of 4) -10196 FBgn0021856 FBgn0021856 FBtr0081482 l(2)k14505 protein_coding CTCF-S2-jox2017_R1_peak_1083 chr3R 1753617 1753867 + 37 NA intron (FBgn0083949, intron 1 of 16) protein_coding-intron (FBgn0083949, intron 1 of 16) 11503 FBgn0083949 FBgn0083949 FBtr0110807 CG34113 protein_coding CTCF-S2-jox2017_R1_peak_1014 chr3L 22664841 22665017 + 37 NA intron (FBgn0037174, intron 1 of 5) protein_coding-intron (FBgn0037174, intron 1 of 5) 1873 FBgn0037174 FBgn0037174 FBtr0331774 CG14457 protein_coding CTCF-S2-jox2017_R1_peak_1880 chrX 8898779 8898938 + 37 NA intron (FBgn0261549, intron 3 of 15) protein_coding-intron (FBgn0261549, intron 3 of 15) -11407 FBgn0262369 FBgn0262369 FBtr0304179 mir-31b pre_miRNA CTCF-S2-jox2017_R1_peak_1712 chrUextra 28725826 28726075 + 37 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1223 chr3R 11594788 11594962 + 37 NA Intergenic Intergenic -1715 FBgn0038357 FBgn0038357 FBtr0083197 CG5623 protein_coding CTCF-S2-jox2017_R1_peak_535 chr2R 14624716 14624865 + 37 NA intron (FBgn0053147, intron 3 of 8) protein_coding-intron (FBgn0053147, intron 3 of 8) -1207 FBgn0053998 FBgn0053998 FBtr0100053 CG33998 protein_coding CTCF-S2-jox2017_R1_peak_295 chr2L 20385444 20385595 + 37 NA exon (FBgn0032857, exon 2 of 2) protein_coding-exon (FBgn0032857, exon 2 of 2) -3164 FBgn0032856 FBgn0032856 FBtr0081371 CG16798 protein_coding CTCF-S2-jox2017_R1_peak_54 chr2L 4123178 4123451 + 37 NA exon (FBgn0014033, exon 3 of 4) protein_coding-exon (FBgn0014033, exon 3 of 4) 1593 FBgn0014033 FBgn0014033 FBtr0077467 Sr-CI protein_coding CTCF-S2-jox2017_R1_peak_1624 chrUextra 22459642 22459894 + 37 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_304 chr2L 21263543 21263689 + 37 NA promoter-TSS (FBgn0263536) pre_miRNA-promoter-TSS (FBgn0263536) -376 FBgn0263536 FBgn0263536 FBtr0309633 mir-4974 pre_miRNA CTCF-S2-jox2017_R1_peak_1330 chr3R 17764179 17764354 + 37 NA Intergenic Intergenic 24795 FBgn0038919 FBgn0038919 FBtr0084150 CG17843 protein_coding CTCF-S2-jox2017_R1_peak_1745 chrUextra 28898978 28899520 + 37 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1539 chrU 9934797 9935053 + 37 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1315 chr3R 16810547 16810705 + 37 NA intron (FBgn0013995, intron 1 of 10) protein_coding-intron (FBgn0013995, intron 1 of 8) 3032 FBgn0263400 FBgn0263400 FBtr0309177 CG43446 protein_coding CTCF-S2-jox2017_R1_peak_825 chr3L 10891119 10891273 + 37 NA exon (FBgn0036111, exon 1 of 4) protein_coding-exon (FBgn0036111, exon 1 of 4) 1027 FBgn0036111 FBgn0036111 FBtr0076251 Aps protein_coding CTCF-S2-jox2017_R1_peak_705 chr3L 4192818 4193000 + 37 NA TTS (FBgn0040696) protein_coding-TTS (FBgn0040696) -1659 FBgn0263110 FBgn0263110 FBtr0307312 CG43367 protein_coding CTCF-S2-jox2017_R1_peak_456 chr2R 9526605 9526774 + 37 NA intron (FBgn0000633, intron 1 of 12) protein_coding-intron (FBgn0000633, intron 1 of 12) 16096 FBgn0000633 FBgn0000633 FBtr0087625 fas protein_coding CTCF-S2-jox2017_R1_peak_231 chr2L 15438680 15439322 + 37 NA Intergenic Intergenic 5639 FBgn0028892 FBgn0028892 FBtr0080735 CG4161 protein_coding CTCF-S2-jox2017_R1_peak_1836 chrX 5071379 5071524 + 36 NA TTS (FBgn0029746) protein_coding-TTS (FBgn0029746) 4951 FBgn0029747 FBgn0029747 FBtr0070759 CG5062 protein_coding CTCF-S2-jox2017_R1_peak_561 chr2R 16680953 16681142 + 36 NA exon (FBgn0034551, exon 1 of 1) protein_coding-exon (FBgn0034551, exon 1 of 1) 575 FBgn0034551 FBgn0034551 FBtr0071513 CG15225 protein_coding CTCF-S2-jox2017_R1_peak_1630 chrUextra 23704247 23704731 + 36 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_756 chr3L 6935133 6935533 + 36 NA promoter-TSS (FBgn0035719) protein_coding-promoter-TSS (FBgn0035719) -623 FBgn0035719 FBgn0035719 FBtr0113150 tow protein_coding CTCF-S2-jox2017_R1_peak_1738 chrUextra 28858961 28859210 + 36 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1368 chr3R 20519203 20519421 + 36 NA intron (FBgn0003429, intron 12 of 22) protein_coding-intron (FBgn0003429, intron 13 of 24) -21194 FBgn0039217 FBgn0039217 FBtr0084687 CG13627 protein_coding CTCF-S2-jox2017_R1_peak_1038 chr3LHet 253248 253411 + 36 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1580 chrUextra 10240799 10241035 + 36 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1467 chr3RHet 1771850 1772077 + 36 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_855 chr3L 12289521 12289674 + 36 NA promoter-TSS (FBgn0036274) protein_coding-promoter-TSS (FBgn0036274) -374 FBgn0036274 FBgn0036274 FBtr0301071 CG4328 protein_coding CTCF-S2-jox2017_R1_peak_53 chr2L 3986732 3986890 + 36 NA intron (FBgn0051774, intron 2 of 9) protein_coding-intron (FBgn0051774, intron 2 of 8) 4902 FBgn0051774 FBgn0051774 FBtr0308126 fred protein_coding CTCF-S2-jox2017_R1_peak_831 chr3L 11038139 11038554 + 36 NA intron (FBgn0263776, intron 1 of 6) protein_coding-intron (FBgn0263776, intron 1 of 5) 6125 FBgn0263776 FBgn0263776 FBtr0310568 CG43693 protein_coding CTCF-S2-jox2017_R1_peak_1231 chr3R 12176290 12176495 + 36 NA TTS (FBgn0038420) protein_coding-TTS (FBgn0038420) 1266 FBgn0027095 FBgn0027095 FBtr0083283 Manf protein_coding CTCF-S2-jox2017_R1_peak_1446 chr3R 26760649 26760802 + 36 NA TTS (FBgn0039810) protein_coding-TTS (FBgn0039810) 1504 FBgn0039810 FBgn0039810 FBtr0085752 CG15549 protein_coding CTCF-S2-jox2017_R1_peak_729 chr3L 5498225 5498421 + 36 NA intron (FBgn0085371, intron 7 of 9) protein_coding-intron (FBgn0085371, intron 8 of 10) 5637 FBgn0085371 FBgn0085371 FBtr0301080 CG34342 protein_coding CTCF-S2-jox2017_R1_peak_1260 chr3R 13594434 13594587 + 36 NA exon (FBgn0262562, exon 17 of 17) protein_coding-exon (FBgn0262562, exon 17 of 17) -6307 FBgn0038542 FBgn0038542 FBtr0083532 TyrR protein_coding CTCF-S2-jox2017_R1_peak_1265 chr3R 13710645 13710844 + 36 NA intron (FBgn0053547, intron 17 of 24) protein_coding-intron (FBgn0053547, intron 18 of 26) -21442 FBgn0038558 FBgn0038558 FBtr0308497 CG12347 protein_coding CTCF-S2-jox2017_R1_peak_121 chr2L 8107899 8108070 + 36 NA exon (FBgn0261822, exon 7 of 7) protein_coding-exon (FBgn0261822, exon 7 of 7) 16017 FBgn0031985 FBgn0031985 FBtr0301229 mon2 protein_coding CTCF-S2-jox2017_R1_peak_901 chr3L 15261780 15261955 + 36 NA Intergenic Intergenic -30191 FBgn0036491 FBgn0036491 FBtr0113172 Best4 protein_coding CTCF-S2-jox2017_R1_peak_576 chr2R 17285931 17286163 + 36 NA exon (FBgn0010415, exon 5 of 7) protein_coding-exon (FBgn0010415, exon 5 of 7) 9146 FBgn0034629 FBgn0034629 FBtr0071607 Acox57D-d protein_coding CTCF-S2-jox2017_R1_peak_252 chr2L 17557873 17558024 + 36 NA Intergenic Intergenic -2183 FBgn0032650 FBgn0032650 FBtr0080990 CG7094 protein_coding CTCF-S2-jox2017_R1_peak_839 chr3L 11351858 11352211 + 36 NA Intergenic Intergenic 5951 FBgn0036155 FBgn0036155 FBtr0333387 CG6163 protein_coding CTCF-S2-jox2017_R1_peak_1377 chr3R 21225704 21225911 + 36 NA exon (FBgn0051439, exon 2 of 2) protein_coding-exon (FBgn0051439, exon 2 of 2) 560 FBgn0051439 FBgn0051439 FBtr0084845 Muc96D protein_coding CTCF-S2-jox2017_R1_peak_1707 chrUextra 28673021 28673275 + 36 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1036 chr3L 24488318 24488642 + 36 NA Intergenic Intergenic -38709 FBgn0040045 FBgn0040045 FBtr0307117 CR12460 pseudogene CTCF-S2-jox2017_R1_peak_1574 chrUextra 8459240 8459494 + 36 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_476 chr2R 10380138 10380373 + 36 NA intron (FBgn0001332, intron 1 of 3) protein_coding-intron (FBgn0001332, intron 1 of 3) 10729 FBgn0024698 FBgn0024698 FBtr0089258 Cpsf160 protein_coding CTCF-S2-jox2017_R1_peak_1312 chr3R 16775450 16775654 + 35 NA intron (FBgn0002921, intron 1 of 9) protein_coding-intron (FBgn0002921, intron 1 of 9) 1116 FBgn0002921 FBgn0002921 FBtr0089516 Atpalpha protein_coding CTCF-S2-jox2017_R1_peak_1486 chr4 374594 374760 + 35 NA intron (FBgn0259214, intron 5 of 16) protein_coding-intron (FBgn0259214, intron 5 of 17) 4606 FBgn0259214 FBgn0259214 FBtr0300559 PMCA protein_coding CTCF-S2-jox2017_R1_peak_112 chr2L 7803619 7803773 + 35 NA exon (FBgn0031952, exon 7 of 7) protein_coding-exon (FBgn0031952, exon 7 of 7) 3529 FBgn0031951 FBgn0031951 FBtr0079489 r2d2 protein_coding CTCF-S2-jox2017_R1_peak_1292 chr3R 15596579 15596878 + 35 NA exon (FBgn0038730, exon 3 of 3) protein_coding-exon (FBgn0038730, exon 3 of 3) 2219 FBgn0038730 FBgn0038730 FBtr0083798 CG6300 protein_coding CTCF-S2-jox2017_R1_peak_428 chr2R 7550368 7550513 + 35 NA intron (FBgn0044020, intron 3 of 3) protein_coding-intron (FBgn0044020, intron 2 of 2) -2300 FBgn0011916 FBgn0011916 FBtr0088086 tRNA:M2:48Bb tRNA CTCF-S2-jox2017_R1_peak_818 chr3L 10569531 10569676 + 35 NA intron (FBgn0052062, intron 7 of 13) protein_coding-intron (FBgn0052062, intron 7 of 14) -17421 FBgn0036085 FBgn0036085 FBtr0076291 CG6527 protein_coding CTCF-S2-jox2017_R1_peak_1835 chrX 5070758 5070904 + 35 NA TTS (FBgn0029746) protein_coding-TTS (FBgn0029746) 5571 FBgn0029747 FBgn0029747 FBtr0070759 CG5062 protein_coding CTCF-S2-jox2017_R1_peak_152 chr2L 9809600 9809782 + 35 NA intron (FBgn0032151, intron 6 of 13) protein_coding-intron (FBgn0032151, intron 5 of 13) -16584 FBgn0032150 FBgn0032150 FBtr0331286 CG13123 protein_coding CTCF-S2-jox2017_R1_peak_416 chr2R 7090868 7091077 + 35 NA intron (FBgn0003396, intron 1 of 6) protein_coding-intron (FBgn0003396, intron 2 of 7) 15797 FBgn0033582 FBgn0033582 FBtr0330635 CG9084 protein_coding CTCF-S2-jox2017_R1_peak_523 chr2R 13681738 13681910 + 35 NA exon (FBgn0028743, exon 1 of 7) protein_coding-exon (FBgn0028743, exon 1 of 7) 1437 FBgn0028743 FBgn0028743 FBtr0301142 CG5036 protein_coding CTCF-S2-jox2017_R1_peak_1844 chrX 5501826 5502108 + 35 NA intron (FBgn0263511, intron 2 of 2) protein_coding-intron (FBgn0263511, intron 2 of 2) 6461 FBgn0085464 FBgn0085464 FBtr0112736 CG34435 protein_coding CTCF-S2-jox2017_R1_peak_1461 chr3RHet 1030541 1030686 + 35 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1374 chr3R 21224017 21224299 + 35 NA exon (FBgn0051439, exon 2 of 2) protein_coding-exon (FBgn0051439, exon 2 of 2) 2209 FBgn0051439 FBgn0051439 FBtr0084845 Muc96D protein_coding CTCF-S2-jox2017_R1_peak_574 chr2R 17146202 17146376 + 35 NA intron (FBgn0085426, intron 2 of 8) protein_coding-intron (FBgn0085426, intron 1 of 8) 2970 FBgn0085426 FBgn0085426 FBtr0305983 Rgk3 protein_coding CTCF-S2-jox2017_R1_peak_929 chr3L 16955206 16955385 + 35 NA intron (FBgn0010352, intron 6 of 12) protein_coding-intron (FBgn0010352, intron 5 of 10) 7260 FBgn0010352 FBgn0010352 FBtr0075269 Nc73EF protein_coding CTCF-S2-jox2017_R1_peak_1105 chr3R 2865052 2865251 + 35 NA Intergenic Intergenic -12906 FBgn0024289 FBgn0024289 FBtr0081627 Sodh-1 protein_coding CTCF-S2-jox2017_R1_peak_663 chr3L 1114088 1114241 + 35 NA Intergenic Intergenic -13075 FBgn0004870 FBgn0004870 FBtr0072643 bab1 protein_coding CTCF-S2-jox2017_R1_peak_1905 chrX 10631403 10631585 + 35 NA intron (FBgn0052676, intron 1 of 3) protein_coding-intron (FBgn0052676, intron 1 of 3) -7041 FBgn0003204 FBgn0003204 FBtr0071496 ras protein_coding CTCF-S2-jox2017_R1_peak_1677 chrUextra 28281771 28282009 + 35 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1121 chr3R 4499559 4499725 + 35 NA promoter-TSS (FBgn0037608) protein_coding-promoter-TSS (FBgn0037608) -197 FBgn0037608 FBgn0037608 FBtr0081901 mRpL19 protein_coding CTCF-S2-jox2017_R1_peak_1084 chr3R 1786581 1786744 + 35 NA promoter-TSS (FBgn0040679) protein_coding-promoter-TSS (FBgn0040679) 45 FBgn0040679 FBgn0040679 FBtr0078657 CG11373 protein_coding CTCF-S2-jox2017_R1_peak_1782 chrX 1534813 1534994 + 35 NA intron (FBgn0000210, intron 7 of 7) protein_coding-intron (FBgn0000210, intron 7 of 7) -11451 FBgn0029584 FBgn0029584 FBtr0305287 CG11509 protein_coding CTCF-S2-jox2017_R1_peak_967 chr3L 19125768 19125987 + 35 NA intron (FBgn0036851, intron 2 of 4) protein_coding-intron (FBgn0036851, intron 2 of 4) -3112 FBgn0052203 FBgn0052203 FBtr0110771 Spn75F protein_coding CTCF-S2-jox2017_R1_peak_150 chr2L 9800536 9800701 + 35 NA intron (FBgn0032151, intron 10 of 13) protein_coding-intron (FBgn0032151, intron 10 of 13) -7511 FBgn0032150 FBgn0032150 FBtr0331286 CG13123 protein_coding CTCF-S2-jox2017_R1_peak_530 chr2R 14462055 14462224 + 35 NA intron (FBgn0050115, intron 1 of 8) protein_coding-intron (FBgn0050115, intron 1 of 7) 35049 FBgn0085419 FBgn0085419 FBtr0112633 Rgk2 protein_coding CTCF-S2-jox2017_R1_peak_203 chr2L 13078543 13078688 + 35 NA Intergenic Intergenic -18500 FBgn0262160 FBgn0262160 FBtr0089956 CG9932 protein_coding CTCF-S2-jox2017_R1_peak_344 chr2R 2615560 2615709 + 35 NA exon (FBgn0010482, exon 11 of 11) protein_coding-exon (FBgn0010482, exon 11 of 11) -8596 FBgn0033097 FBgn0033097 FBtr0306802 CG9430 protein_coding CTCF-S2-jox2017_R1_peak_2043 chrX 20663731 20663888 + 35 NA promoter-TSS (FBgn0085387) protein_coding-promoter-TSS (FBgn0085387) -11562 FBgn0052507 FBgn0052507 FBtr0302987 CG32507 protein_coding CTCF-S2-jox2017_R1_peak_1509 chrU 501153 501317 + 35 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1755 chrUextra 28929791 28930046 + 35 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_905 chr3L 15596065 15596223 + 35 NA TTS (FBgn0036518) protein_coding-TTS (FBgn0036518) 7342 FBgn0036519 FBgn0036519 FBtr0075591 CG7650 protein_coding CTCF-S2-jox2017_R1_peak_1130 chr3R 4894378 4894533 + 35 NA exon (FBgn0003165, exon 11 of 11) protein_coding-exon (FBgn0003165, exon 11 of 11) 3550 FBgn0037661 FBgn0037661 FBtr0081971 Ada protein_coding CTCF-S2-jox2017_R1_peak_1098 chr3R 2627454 2627603 + 35 NA exon (FBgn0000439, exon 5 of 5) protein_coding-exon (FBgn0000439, exon 5 of 5) 7728 FBgn0262424 FBgn0262424 FBtr0304381 mir-10 pre_miRNA CTCF-S2-jox2017_R1_peak_1360 chr3R 20222469 20222614 + 35 NA Intergenic Intergenic 3909 FBgn0039200 FBgn0039200 FBtr0084618 CG13616 protein_coding CTCF-S2-jox2017_R1_peak_1690 chrUextra 28556135 28556373 + 35 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1093 chr3R 2255563 2255776 + 35 NA intron (FBgn0264495, intron 2 of 9) protein_coding-intron (FBgn0264495, intron 2 of 8) 23090 FBgn0264495 FBgn0264495 FBtr0303788 gpp protein_coding CTCF-S2-jox2017_R1_peak_1225 chr3R 11883072 11883217 + 35 NA intron (FBgn0027948, intron 8 of 15) protein_coding-intron (FBgn0027948, intron 7 of 14) 5544 FBgn0027948 FBgn0027948 FBtr0304803 msps protein_coding CTCF-S2-jox2017_R1_peak_1540 chrUextra 82323 82762 + 34 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_2053 chrX 21652710 21653095 + 34 NA Intergenic Intergenic -151717 FBgn0024807 FBgn0024807 FBtr0301292 DIP1 protein_coding CTCF-S2-jox2017_R1_peak_1465 chr3RHet 1632127 1632342 + 34 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_683 chr3L 2959038 2959184 + 34 NA TTS (FBgn0054025) protein_coding-TTS (FBgn0054025) 1938 FBgn0054025 FBgn0054025 FBtr0290083 CG34025 protein_coding CTCF-S2-jox2017_R1_peak_1302 chr3R 16435471 16435624 + 34 NA intron (FBgn0023097, intron 7 of 9) protein_coding-intron (FBgn0023097, intron 7 of 9) -4993 FBgn0051506 FBgn0051506 FBtr0083943 tRNA:CR31506 tRNA CTCF-S2-jox2017_R1_peak_645 chr2RHet 3069215 3069898 + 34 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_511 chr2R 12724485 12724632 + 34 NA Intergenic Intergenic 5569 FBgn0262432 FBgn0262432 FBtr0304405 mir-8 pre_miRNA CTCF-S2-jox2017_R1_peak_1515 chrU 1230493 1230712 + 34 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1916 chrX 11759242 11759387 + 34 NA exon (FBgn0030344, exon 4 of 4) protein_coding-exon (FBgn0030344, exon 4 of 4) 3603 FBgn0030344 FBgn0030344 FBtr0073601 CG2025 protein_coding CTCF-S2-jox2017_R1_peak_1683 chrUextra 28408022 28408167 + 34 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_545 chr2R 15410638 15410800 + 34 NA TTS (FBgn0003435) protein_coding-TTS (FBgn0003435) -9643 FBgn0034458 FBgn0034458 FBtr0086497 Ir56d protein_coding CTCF-S2-jox2017_R1_peak_519 chr2R 13256722 13257122 + 34 NA intron (FBgn0261642, intron 7 of 7) protein_coding-intron (FBgn0261642, intron 6 of 7) 22428 FBgn0050232 FBgn0050232 FBtr0086965 tRNA:CR30232 tRNA CTCF-S2-jox2017_R1_peak_1627 chrUextra 23067254 23067522 + 34 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1959 chrX 14865196 14865375 + 34 NA exon (FBgn0000535, exon 3 of 17) protein_coding-exon (FBgn0000535, exon 3 of 17) 15775 FBgn0000535 FBgn0000535 FBtr0310015 eag protein_coding CTCF-S2-jox2017_R1_peak_748 chr3L 6702239 6702392 + 34 NA TTS (FBgn0035711) protein_coding-TTS (FBgn0035711) 1630 FBgn0035711 FBgn0035711 FBtr0333072 CG8519 protein_coding CTCF-S2-jox2017_R1_peak_1593 chrUextra 13533177 13533421 + 34 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_285 chr2L 19611110 19611278 + 34 NA promoter-TSS (FBgn0000464) protein_coding-promoter-TSS (FBgn0000464) 24571 FBgn0000464 FBgn0000464 FBtr0305950 Lar protein_coding CTCF-S2-jox2017_R1_peak_1313 chr3R 16799599 16799837 + 34 NA exon (FBgn0002921, exon 10 of 10) protein_coding-exon (FBgn0002921, exon 10 of 10) -4287 FBgn0013995 FBgn0013995 FBtr0309202 Calx protein_coding CTCF-S2-jox2017_R1_peak_589 chr2R 18223344 18223530 + 34 NA intron (FBgn0034720, intron 9 of 11) protein_coding-intron (FBgn0034720, intron 11 of 13) 2806 FBgn0085237 FBgn0085237 FBtr0112401 CG34208 protein_coding CTCF-S2-jox2017_R1_peak_318 chr2R 44916 45097 + 34 NA Intergenic Intergenic 26527 FBgn0262115 FBgn0262115 FBtr0111298 CG17683 protein_coding CTCF-S2-jox2017_R1_peak_1200 chr3R 9588146 9588306 + 34 NA TTS (FBgn0085412) protein_coding-TTS (FBgn0085412) -3271 FBgn0038179 FBgn0038179 FBtr0082825 CG9312 protein_coding CTCF-S2-jox2017_R1_peak_1018 chr3L 22901045 22901196 + 34 NA Intergenic Intergenic -2471 FBgn0037206 FBgn0037206 FBtr0331397 CG12768 protein_coding CTCF-S2-jox2017_R1_peak_1104 chr3R 2855166 2855478 + 34 NA Intergenic Intergenic -22735 FBgn0024289 FBgn0024289 FBtr0081627 Sodh-1 protein_coding CTCF-S2-jox2017_R1_peak_1389 chr3R 22143768 22143913 + 34 NA promoter-TSS (FBgn0053970) protein_coding-promoter-TSS (FBgn0053970) 7157 FBgn0261833 FBgn0261833 FBtr0303394 CG42765 protein_coding CTCF-S2-jox2017_R1_peak_1884 chrX 9180573 9180723 + 34 NA exon (FBgn0002576, exon 2 of 6) protein_coding-exon (FBgn0002576, exon 2 of 6) 1966 FBgn0002576 FBgn0002576 FBtr0112814 lz protein_coding CTCF-S2-jox2017_R1_peak_397 chr2R 6245240 6245423 + 34 NA intron (FBgn0261698, intron 1 of 27) protein_coding-intron (FBgn0261698, intron 2 of 28) -1026 FBgn0261686 FBgn0261686 FBtr0303086 CG42733 protein_coding CTCF-S2-jox2017_R1_peak_1902 chrX 10540293 10540543 + 34 NA intron (FBgn0052677, intron 2 of 12) protein_coding-intron (FBgn0052677, intron 2 of 14) -11295 FBgn0030223 FBgn0030223 FBtr0071492 CG2111 protein_coding CTCF-S2-jox2017_R1_peak_1947 chrX 14140887 14141360 + 34 NA promoter-TSS (FBgn0002873) protein_coding-promoter-TSS (FBgn0002873) -642 FBgn0002873 FBgn0002873 FBtr0332621 mud protein_coding CTCF-S2-jox2017_R1_peak_1882 chrX 9070693 9070838 + 34 NA exon (FBgn0026206, exon 8 of 8) protein_coding-exon (FBgn0026206, exon 8 of 8) 12569 FBgn0026206 FBgn0026206 FBtr0333475 mei-P26 protein_coding CTCF-S2-jox2017_R1_peak_106 chr2L 7327013 7327176 + 34 NA Intergenic Intergenic -7707 FBgn0031902 FBgn0031902 FBtr0303251 Wnt6 protein_coding CTCF-S2-jox2017_R1_peak_1815 chrX 3637328 3637541 + 34 NA intron (FBgn0086899, intron 1 of 7) protein_coding-intron (FBgn0086899, intron 1 of 7) -23769 FBgn0015286 FBgn0015286 FBtr0070584 Rala protein_coding CTCF-S2-jox2017_R1_peak_877 chr3L 14143495 14143645 + 34 NA Intergenic Intergenic -19173 FBgn0042630 FBgn0042630 FBtr0330116 Sox21b protein_coding CTCF-S2-jox2017_R1_peak_764 chr3L 7361576 7361858 + 34 NA promoter-TSS (FBgn0035772) protein_coding-promoter-TSS (FBgn0035772) 643 FBgn0035772 FBgn0035772 FBtr0302546 Sh3beta protein_coding CTCF-S2-jox2017_R1_peak_2037 chrX 20403796 20403941 + 34 NA promoter-TSS (FBgn0259162) protein_coding-promoter-TSS (FBgn0259162) 5176 FBgn0260869 FBgn0260869 FBtr0301565 CG42579 protein_coding CTCF-S2-jox2017_R1_peak_1914 chrX 11604598 11604768 + 34 NA promoter-TSS (FBgn0030327) protein_coding-promoter-TSS (FBgn0030327) -699 FBgn0030327 FBgn0030327 FBtr0073620 FucT6 protein_coding CTCF-S2-jox2017_R1_peak_599 chr2R 19107945 19108195 + 33 NA Intergenic Intergenic -9008 FBgn0034834 FBgn0034834 FBtr0072052 LS2 protein_coding CTCF-S2-jox2017_R1_peak_1096 chr3R 2535419 2535628 + 33 NA exon (FBgn0051481, exon 8 of 9) protein_coding-exon (FBgn0051481, exon 8 of 9) 5719 FBgn0004783 FBgn0004783 FBtr0081691 Ccp84Aa protein_coding CTCF-S2-jox2017_R1_peak_1584 chrUextra 11425909 11426166 + 33 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_183 chr2L 12085892 12086141 + 33 NA promoter-TSS (FBgn0003145) protein_coding-promoter-TSS (FBgn0003145) -638 FBgn0003145 FBgn0003145 FBtr0080299 prd protein_coding CTCF-S2-jox2017_R1_peak_1589 chrUextra 13152784 13152929 + 33 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1149 chr3R 5928504 5928842 + 33 NA exon (FBgn0028734, exon 12 of 12) protein_coding-exon (FBgn0028734, exon 12 of 12) 1999 FBgn0262459 FBgn0262459 FBtr0304500 mir-34 pre_miRNA CTCF-S2-jox2017_R1_peak_1089 chr3R 2133037 2133432 + 33 NA exon (FBgn0051556, exon 2 of 2) protein_coding-exon (FBgn0051556, exon 2 of 2) 1784 FBgn0051556 FBgn0051556 FBtr0078612 CG31556 protein_coding CTCF-S2-jox2017_R1_peak_1883 chrX 9084782 9084927 + 33 NA promoter-TSS (FBgn0030098) protein_coding-promoter-TSS (FBgn0030098) -216 FBgn0030097 FBgn0030097 FBtr0071341 CG12115 protein_coding CTCF-S2-jox2017_R1_peak_1278 chr3R 14746109 14746269 + 33 NA exon (FBgn0261113, exon 3 of 5) protein_coding-exon (FBgn0261113, exon 3 of 5) 1978 FBgn0261113 FBgn0261113 FBtr0083703 Xrp1 protein_coding CTCF-S2-jox2017_R1_peak_56 chr2L 4222731 4222885 + 33 NA Intergenic Intergenic -1012 FBgn0001075 FBgn0001075 FBtr0077478 ft protein_coding CTCF-S2-jox2017_R1_peak_424 chr2R 7477198 7477344 + 33 NA exon (FBgn0033636, exon 6 of 17) protein_coding-exon (FBgn0033636, exon 6 of 17) -1435 FBgn0082993 FBgn0082993 FBtr0113499 snoRNA:Psi28S-1936 snoRNA CTCF-S2-jox2017_R1_peak_565 chr2R 16807408 16807594 + 33 NA intron (FBgn0020617, intron 2 of 5) protein_coding-intron (FBgn0020617, intron 2 of 5) 3216 FBgn0020617 FBgn0020617 FBtr0071518 Rx protein_coding CTCF-S2-jox2017_R1_peak_52 chr2L 3855889 3856119 + 33 NA Intergenic Intergenic -6677 FBgn0031574 FBgn0031574 FBtr0077502 CG3964 protein_coding CTCF-S2-jox2017_R1_peak_1819 chrX 3973575 3973806 + 33 NA intron (FBgn0263772, intron 2 of 9) protein_coding-intron (FBgn0263772, intron 2 of 10) 3583 FBgn0263772 FBgn0263772 FBtr0310493 CG43689 protein_coding CTCF-S2-jox2017_R1_peak_1463 chr3RHet 1128871 1129180 + 33 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_903 chr3L 15359464 15359751 + 33 NA Intergenic Intergenic 29815 FBgn0036494 FBgn0036494 FBtr0075614 Toll-6 protein_coding CTCF-S2-jox2017_R1_peak_1638 chrUextra 24910063 24910305 + 33 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1770 chrX 659204 659349 + 33 NA promoter-TSS (FBgn0015288) protein_coding-promoter-TSS (FBgn0015288) -104 FBgn0015288 FBgn0015288 FBtr0070148 RpL22 protein_coding CTCF-S2-jox2017_R1_peak_1496 chr4 739335 739510 + 33 NA intron (FBgn0005558, intron 7 of 8) protein_coding-intron (FBgn0005558, intron 6 of 7) -5608 FBgn0005666 FBgn0005666 FBtr0301341 bt protein_coding CTCF-S2-jox2017_R1_peak_1952 chrX 14773060 14773209 + 33 NA intron (FBgn0030591, intron 1 of 3) protein_coding-intron (FBgn0264078, intron 2 of 7) 3484 FBgn0030591 FBgn0030591 FBtr0073982 CG9517 protein_coding CTCF-S2-jox2017_R1_peak_159 chr2L 10124008 10124470 + 33 NA intron (FBgn0083945, intron 12 of 12) protein_coding-intron (FBgn0083945, intron 12 of 12) -1468 FBgn0032184 FBgn0032184 FBtr0079966 CG13135 protein_coding CTCF-S2-jox2017_R1_peak_1033 chr3L 24249261 24249751 + 33 NA intron (FBgn0011288, intron 6 of 6) protein_coding-intron (FBgn0011288, intron 6 of 7) -68461 FBgn0259697 FBgn0259697 FBtr0113473 nvd protein_coding CTCF-S2-jox2017_R1_peak_1894 chrX 9790168 9790370 + 33 NA Intergenic Intergenic -7076 FBgn0030161 FBgn0030161 FBtr0112967 CG15249 protein_coding CTCF-S2-jox2017_R1_peak_654 chr3L 673530 673704 + 33 NA Intergenic Intergenic 6709 FBgn0035151 FBgn0035151 FBtr0072614 CG17129 protein_coding CTCF-S2-jox2017_R1_peak_1192 chr3R 8850296 8850482 + 33 NA intron (FBgn0020496, intron 6 of 7) protein_coding-intron (FBgn0020496, intron 6 of 7) 5629 FBgn0038111 FBgn0038111 FBtr0113229 CG12360 protein_coding CTCF-S2-jox2017_R1_peak_1057 chr3LHet 2492888 2493033 + 33 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1359 chr3R 20071789 20071934 + 33 NA exon (FBgn0043884, exon 15 of 17) protein_coding-exon (FBgn0043884, exon 15 of 17) 6540 FBgn0039175 FBgn0039175 FBtr0084637 CG5706 protein_coding CTCF-S2-jox2017_R1_peak_1110 chr3R 3509480 3509625 + 33 NA intron (FBgn0051146, intron 8 of 11) protein_coding-intron (FBgn0051146, intron 8 of 11) 25581 FBgn0051146 FBgn0051146 FBtr0305969 Nlg1 protein_coding CTCF-S2-jox2017_R1_peak_362 chr2R 4222877 4223086 + 33 NA intron (FBgn0261588, intron 1 of 10) protein_coding-intron (FBgn0261588, intron 1 of 10) 7976 FBgn0261588 FBgn0261588 FBtr0302918 pdm3 protein_coding CTCF-S2-jox2017_R1_peak_650 chr3L 441686 441831 + 33 NA promoter-TSS (FBgn0001316) protein_coding-promoter-TSS (FBgn0001316) 6374 FBgn0001316 FBgn0001316 FBtr0112808 klar protein_coding CTCF-S2-jox2017_R1_peak_1795 chrX 2669043 2669188 + 33 NA intron (FBgn0028369, intron 2 of 11) protein_coding-intron (FBgn0028369, intron 2 of 12) 15485 FBgn0040384 FBgn0040384 FBtr0070493 CG32795 protein_coding CTCF-S2-jox2017_R1_peak_1424 chr3R 25376459 25376613 + 33 NA Intergenic Intergenic -5573 FBgn0000492 FBgn0000492 FBtr0085441 Dr protein_coding CTCF-S2-jox2017_R1_peak_1303 chr3R 16578995 16579166 + 33 NA intron (FBgn0259222, intron 9 of 10) protein_coding-intron (FBgn0259222, intron 9 of 9) -3371 FBgn0038826 FBgn0038826 FBtr0113255 CG17838 protein_coding CTCF-S2-jox2017_R1_peak_366 chr2R 4284175 4284382 + 33 NA TTS (FBgn0261588) protein_coding-TTS (FBgn0261588) 14950 FBgn0033289 FBgn0033289 FBtr0088764 CG2121 protein_coding CTCF-S2-jox2017_R1_peak_1989 chrX 16985163 16985336 + 33 NA promoter-TSS (FBgn0030816) protein_coding-promoter-TSS (FBgn0030816) -638 FBgn0030816 FBgn0030816 FBtr0074383 CG16700 protein_coding CTCF-S2-jox2017_R1_peak_451 chr2R 9249969 9250125 + 33 NA Intergenic Intergenic -8074 FBgn0033828 FBgn0033828 FBtr0087721 CG17048 protein_coding CTCF-S2-jox2017_R1_peak_1762 chrUextra 28979453 28979796 + 33 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1400 chr3R 23054185 23054361 + 33 NA promoter-TSS (FBgn0261995) protein_coding-promoter-TSS (FBgn0261995) -29 FBgn0261995 FBgn0261995 FBtr0303825 CG42813 protein_coding CTCF-S2-jox2017_R1_peak_238 chr2L 16244701 16244846 + 33 NA exon (FBgn0262000, exon 1 of 3) protein_coding-exon (FBgn0262000, exon 1 of 3) 2834 FBgn0262000 FBgn0262000 FBtr0303798 CG42818 protein_coding CTCF-S2-jox2017_R1_peak_1015 chr3L 22782810 22782955 + 33 NA TTS (FBgn0037191) protein_coding-TTS (FBgn0037191) 1343 FBgn0037191 FBgn0037191 FBtr0078534 CG14448 protein_coding CTCF-S2-jox2017_R1_peak_279 chr2L 19382419 19382586 + 33 NA TTS (FBgn0032773) protein_coding-TTS (FBgn0032773) 1572 FBgn0032772 FBgn0032772 FBtr0081199 CG17350 protein_coding CTCF-S2-jox2017_R1_peak_143 chr2L 9715624 9715774 + 32 NA TTS (FBgn0028704) protein_coding-TTS (FBgn0028704) -4430 FBgn0032138 FBgn0032138 FBtr0079848 CG4364 protein_coding CTCF-S2-jox2017_R1_peak_518 chr2R 13249586 13249769 + 32 NA TTS (FBgn0261642) protein_coding-TTS (FBgn0261642) 29673 FBgn0050232 FBgn0050232 FBtr0086965 tRNA:CR30232 tRNA CTCF-S2-jox2017_R1_peak_1813 chrX 3625828 3625973 + 32 NA intron (FBgn0086899, intron 1 of 7) protein_coding-intron (FBgn0086899, intron 1 of 7) -12235 FBgn0015286 FBgn0015286 FBtr0070584 Rala protein_coding CTCF-S2-jox2017_R1_peak_163 chr2L 10706912 10707100 + 32 NA promoter-TSS (FBgn0024740) protein_coding-promoter-TSS (FBgn0024740) -816 FBgn0024740 FBgn0024740 FBtr0080123 Lip2 protein_coding CTCF-S2-jox2017_R1_peak_1146 chr3R 5835177 5835369 + 32 NA exon (FBgn0053208, exon 15 of 24) protein_coding-exon (FBgn0053208, exon 15 of 24) -8276 FBgn0037773 FBgn0037773 FBtr0300257 CG5359 protein_coding CTCF-S2-jox2017_R1_peak_1483 chr4 215604 216241 + 32 NA Intergenic Intergenic -5709 FBgn0039890 FBgn0039890 FBtr0308247 CG2316 protein_coding CTCF-S2-jox2017_R1_peak_1441 chr3R 26419533 26419776 + 32 NA intron (FBgn0039790, intron 4 of 6) protein_coding-intron (FBgn0039790, intron 5 of 7) -3072 FBgn0051019 FBgn0051019 FBtr0085665 CG31019 protein_coding CTCF-S2-jox2017_R1_peak_868 chr3L 13339450 13339759 + 32 NA Intergenic Intergenic -2661 FBgn0036348 FBgn0036348 FBtr0075838 CG17687 protein_coding CTCF-S2-jox2017_R1_peak_1091 chr3R 2242396 2242607 + 32 NA intron (FBgn0264495, intron 2 of 9) protein_coding-intron (FBgn0264495, intron 2 of 8) 9922 FBgn0264495 FBgn0264495 FBtr0303788 gpp protein_coding CTCF-S2-jox2017_R1_peak_1212 chr3R 10800332 10800477 + 32 NA Intergenic Intergenic -40088 FBgn0038280 FBgn0038280 FBtr0083023 CG14861 protein_coding CTCF-S2-jox2017_R1_peak_1673 chrUextra 28172169 28172416 + 32 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1454 chr3RHet 189424 189680 + 32 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1159 chr3R 6336474 6336806 + 32 NA exon (FBgn0001235, exon 12 of 12) protein_coding-exon (FBgn0001235, exon 12 of 12) 2138 FBgn0263547 FBgn0263547 FBtr0309664 mir-4944 pre_miRNA CTCF-S2-jox2017_R1_peak_466 chr2R 9959212 9959357 + 32 NA intron (FBgn0040752, intron 3 of 11) protein_coding-intron (FBgn0040752, intron 3 of 11) -18546 FBgn0259183 FBgn0259183 FBtr0299667 CG42287 protein_coding CTCF-S2-jox2017_R1_peak_1675 chrUextra 28219865 28220312 + 32 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_652 chr3L 520954 521101 + 32 NA intron (FBgn0001316, intron 1 of 16) protein_coding-intron (FBgn0001316, intron 1 of 18) -7312 FBgn0085298 FBgn0085298 FBtr0112464 CG34269 protein_coding CTCF-S2-jox2017_R1_peak_1955 chrX 14812913 14813058 + 32 NA promoter-TSS (FBgn0030597) protein_coding-promoter-TSS (FBgn0030597) -208 FBgn0030597 FBgn0030597 FBtr0073975 Eo protein_coding CTCF-S2-jox2017_R1_peak_558 chr2R 16643893 16644040 + 32 NA Intergenic Intergenic 3856 FBgn0085231 FBgn0085231 FBtr0112395 CG34202 protein_coding CTCF-S2-jox2017_R1_peak_886 chr3L 14390199 14390344 + 32 NA Intergenic Intergenic 5554 FBgn0036422 FBgn0036422 FBtr0075729 CG3868 protein_coding CTCF-S2-jox2017_R1_peak_509 chr2R 12604472 12604646 + 32 NA intron (FBgn0050463, intron 1 of 11) protein_coding-intron (FBgn0050463, intron 1 of 11) 20796 FBgn0262564 FBgn0262564 FBtr0304892 CG43104 protein_coding CTCF-S2-jox2017_R1_peak_1403 chr3R 23202449 23202597 + 32 NA intron (FBgn0016061, intron 16 of 16) protein_coding-intron (FBgn0016061, intron 16 of 16) -6936 FBgn0263453 FBgn0263453 FBtr0309308 CR43476 ncRNA CTCF-S2-jox2017_R1_peak_1852 chrX 6014607 6014795 + 32 NA intron (FBgn0264386, intron 15 of 24) protein_coding-intron (FBgn0264386, intron 16 of 25) 26799 FBgn0029843 FBgn0029843 FBtr0070873 Nep1 protein_coding CTCF-S2-jox2017_R1_peak_1242 chr3R 12683447 12683614 + 32 NA intron (FBgn0263610, intron 5 of 7) ncRNA-intron (FBgn0263610, intron 4 of 6) 1493 FBgn0262462 FBgn0262462 FBtr0304522 mir-iab-4 pre_miRNA CTCF-S2-jox2017_R1_peak_1499 chr4 856581 856775 + 32 NA TTS (FBgn0039937) protein_coding-TTS (FBgn0039937) -2039 FBgn0039938 FBgn0039938 FBtr0089252 Sox102F protein_coding CTCF-S2-jox2017_R1_peak_1907 chrX 10708912 10709057 + 32 NA promoter-TSS (FBgn0262735) protein_coding-promoter-TSS (FBgn0262735) -858 FBgn0262735 FBgn0262735 FBtr0073419 Imp protein_coding CTCF-S2-jox2017_R1_peak_383 chr2R 5410243 5410431 + 32 NA intron (FBgn0259246, intron 1 of 13) protein_coding-intron (FBgn0259246, intron 8 of 21) 19044 FBgn0259246 FBgn0259246 FBtr0305059 brp protein_coding CTCF-S2-jox2017_R1_peak_1020 chr3L 22950263 22950424 + 32 NA Intergenic Intergenic -1941 FBgn0052461 FBgn0052461 FBtr0078567 CG32461 protein_coding CTCF-S2-jox2017_R1_peak_1028 chr3L 24021408 24021553 + 32 NA promoter-TSS (FBgn0058045) protein_coding-promoter-TSS (FBgn0058045) -135 FBgn0058045 FBgn0058045 FBtr0331586 CG40045 protein_coding CTCF-S2-jox2017_R1_peak_1632 chrUextra 23971048 23971304 + 32 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1299 chr3R 15955368 15955549 + 32 NA Intergenic Intergenic 8676 FBgn0045471 FBgn0045471 FBtr0083865 Gr92a protein_coding CTCF-S2-jox2017_R1_peak_712 chr3L 4460829 4461115 + 32 NA promoter-TSS (FBgn0035547) protein_coding-promoter-TSS (FBgn0035547) 399 FBgn0035548 FBgn0035548 FBtr0331409 CG15023 protein_coding CTCF-S2-jox2017_R1_peak_1933 chrX 13098828 13098973 + 32 NA intron (FBgn0005410, intron 2 of 13) protein_coding-intron (FBgn0005410, intron 2 of 2) 6799 FBgn0005410 FBgn0005410 FBtr0073735 sno protein_coding CTCF-S2-jox2017_R1_peak_1541 chrUextra 95759 96099 + 32 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1262 chr3R 13703594 13703760 + 32 NA TTS (FBgn0053547) protein_coding-TTS (FBgn0053547) -28509 FBgn0038558 FBgn0038558 FBtr0308497 CG12347 protein_coding CTCF-S2-jox2017_R1_peak_2012 chrX 18500851 18501070 + 32 NA exon (FBgn0030940, exon 6 of 6) protein_coding-exon (FBgn0030940, exon 6 of 6) 10662 FBgn0030940 FBgn0030940 FBtr0074618 CG15040 protein_coding CTCF-S2-jox2017_R1_peak_964 chr3L 18909704 18909910 + 32 NA promoter-TSS (FBgn0036831) protein_coding-promoter-TSS (FBgn0036831) -874 FBgn0036831 FBgn0036831 FBtr0075069 CG6839 protein_coding CTCF-S2-jox2017_R1_peak_769 chr3L 7721352 7721735 + 32 NA exon (FBgn0035813, exon 1 of 1) protein_coding-exon (FBgn0035813, exon 1 of 1) -2001 FBgn0035812 FBgn0035812 FBtr0076814 CG7457 protein_coding CTCF-S2-jox2017_R1_peak_1451 chr3R 27637947 27638118 + 32 NA promoter-TSS (FBgn0024891) protein_coding-promoter-TSS (FBgn0024891) -192 FBgn0024891 FBgn0024891 FBtr0085851 ferrochelatase protein_coding CTCF-S2-jox2017_R1_peak_299 chr2L 20835635 20835804 + 32 NA promoter-TSS (FBgn0032891) protein_coding-promoter-TSS (FBgn0032891) -112 FBgn0032891 FBgn0032891 FBtr0290042 Oseg5 protein_coding CTCF-S2-jox2017_R1_peak_1652 chrUextra 26525698 26525843 + 32 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_667 chr3L 1861388 1861563 + 32 NA exon (FBgn0004636, exon 2 of 2) protein_coding-exon (FBgn0004636, exon 2 of 2) 341 FBgn0004636 FBgn0004636 FBtr0332671 R protein_coding CTCF-S2-jox2017_R1_peak_346 chr2R 2936453 2936648 + 32 NA promoter-TSS (FBgn0016032) protein_coding-promoter-TSS (FBgn0016032) -751 FBgn0016032 FBgn0016032 FBtr0089033 lbm protein_coding CTCF-S2-jox2017_R1_peak_1865 chrX 7316677 7316840 + 32 NA Intergenic Intergenic 2117 FBgn0040922 FBgn0040922 FBtr0071060 CG15036 protein_coding CTCF-S2-jox2017_R1_peak_1733 chrUextra 28833588 28833807 + 32 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_495 chr2R 11585669 11585814 + 32 NA TTS (FBgn0053462) protein_coding-TTS (FBgn0053462) 989 FBgn0261538 FBgn0261538 FBtr0309868 CG42662 protein_coding CTCF-S2-jox2017_R1_peak_1462 chr3RHet 1039366 1039908 + 32 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_191 chr2L 12374720 12375049 + 32 NA intron (FBgn0262475, intron 2 of 6) protein_coding-intron (FBgn0262475, intron 5 of 9) 18443 FBgn0032424 FBgn0032424 FBtr0080354 CG17010 protein_coding CTCF-S2-jox2017_R1_peak_795 chr3L 9460945 9461137 + 32 NA intron (FBgn0052043, intron 1 of 3) protein_coding-intron (FBgn0052043, intron 2 of 4) 4623 FBgn0052043 FBgn0052043 FBtr0333854 CG32043 protein_coding CTCF-S2-jox2017_R1_peak_631 chr2RHet 472108 472316 + 31 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_313 chr2L 22149638 22149818 + 31 NA intron (FBgn0261802, intron 5 of 6) protein_coding-intron (FBgn0261802, intron 5 of 7) -2026 FBgn0083973 FBgn0083973 FBtr0303249 CG34137 protein_coding CTCF-S2-jox2017_R1_peak_534 chr2R 14604677 14604822 + 31 NA promoter-TSS (FBgn0053147) protein_coding-promoter-TSS (FBgn0053147) -885 FBgn0053147 FBgn0053147 FBtr0086608 Hs3st-A protein_coding CTCF-S2-jox2017_R1_peak_1737 chrUextra 28855756 28856000 + 31 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_609 chr2R 19848398 19848647 + 31 NA TTS (FBgn0034942) protein_coding-TTS (FBgn0034942) 1512 FBgn0034942 FBgn0034942 FBtr0306797 CG13566 protein_coding CTCF-S2-jox2017_R1_peak_1566 chrUextra 7328770 7329002 + 31 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1778 chrX 1280996 1281141 + 31 NA intron (FBgn0052813, intron 3 of 4) protein_coding-intron (FBgn0052813, intron 2 of 3) -1535 FBgn0052813 FBgn0052813 FBtr0330320 CG32813 protein_coding CTCF-S2-jox2017_R1_peak_1619 chrUextra 21375659 21375909 + 31 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1862 chrX 7103358 7103615 + 31 NA intron (FBgn0029939, intron 1 of 3) protein_coding-intron (FBgn0029939, intron 2 of 5) 13424 FBgn0029939 FBgn0029939 FBtr0301241 CG9650 protein_coding CTCF-S2-jox2017_R1_peak_266 chr2L 18703023 18703174 + 31 NA promoter-TSS (FBgn0032703) protein_coding-promoter-TSS (FBgn0032703) 20 FBgn0032702 FBgn0032702 FBtr0081128 CG10376 protein_coding CTCF-S2-jox2017_R1_peak_6 chr2L 283272 283417 + 31 NA promoter-TSS (FBgn0031244) protein_coding-promoter-TSS (FBgn0031244) -63 FBgn0031244 FBgn0031244 FBtr0078137 CG11601 protein_coding CTCF-S2-jox2017_R1_peak_1764 chrUextra 28982888 28983129 + 31 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_99 chr2L 6927100 6927245 + 31 NA TTS (FBgn0004838) protein_coding-TTS (FBgn0004838) -4949 FBgn0262877 FBgn0262877 FBtr0306284 CG43232 protein_coding CTCF-S2-jox2017_R1_peak_212 chr2L 13793395 13793565 + 31 NA promoter-TSS (FBgn0028538) protein_coding-promoter-TSS (FBgn0028538) -70 FBgn0028538 FBgn0028538 FBtr0080538 sec71 protein_coding CTCF-S2-jox2017_R1_peak_1327 chr3R 17609984 17610142 + 31 NA Intergenic Intergenic -1807 FBgn0003867 FBgn0003867 FBtr0084165 tsl protein_coding CTCF-S2-jox2017_R1_peak_1970 chrX 15405598 15405754 + 31 NA TTS (FBgn0027287) protein_coding-TTS (FBgn0027287) 2164 FBgn0262395 FBgn0262395 FBtr0304289 mir-12 pre_miRNA CTCF-S2-jox2017_R1_peak_830 chr3L 11034393 11034635 + 31 NA intron (FBgn0263776, intron 1 of 6) protein_coding-intron (FBgn0263776, intron 1 of 5) 9957 FBgn0263776 FBgn0263776 FBtr0310568 CG43693 protein_coding CTCF-S2-jox2017_R1_peak_1025 chr3L 23689566 23689730 + 31 NA Intergenic Intergenic -18743 FBgn0039977 FBgn0039977 FBtr0333911 CG17454 protein_coding CTCF-S2-jox2017_R1_peak_360 chr2R 4136953 4137113 + 31 NA Intergenic Intergenic -4728 FBgn0033277 FBgn0033277 FBtr0088794 CG14760 protein_coding CTCF-S2-jox2017_R1_peak_616 chr2R 20676481 20676626 + 31 NA exon (FBgn0015801, exon 2 of 3) protein_coding-exon (FBgn0015801, exon 2 of 3) -1621 FBgn0041205 FBgn0041205 FBtr0305672 key protein_coding CTCF-S2-jox2017_R1_peak_1376 chr3R 21225335 21225481 + 31 NA exon (FBgn0051439, exon 2 of 2) protein_coding-exon (FBgn0051439, exon 2 of 2) 959 FBgn0051439 FBgn0051439 FBtr0084845 Muc96D protein_coding CTCF-S2-jox2017_R1_peak_1867 chrX 7360420 7360677 + 31 NA Intergenic Intergenic -13179 FBgn0262827 FBgn0262827 FBtr0306067 CG43198 protein_coding CTCF-S2-jox2017_R1_peak_700 chr3L 3841980 3842134 + 31 NA TTS (FBgn0004875) protein_coding-TTS (FBgn0004875) -4149 FBgn0013751 FBgn0013751 FBtr0330071 Awh protein_coding CTCF-S2-jox2017_R1_peak_226 chr2L 14936308 14936644 + 31 NA intron (FBgn0259213, intron 6 of 19) protein_coding-intron (FBgn0259213, intron 6 of 19) 11741 FBgn0028887 FBgn0028887 FBtr0080675 CG3491 protein_coding CTCF-S2-jox2017_R1_peak_1994 chrX 17589809 17589991 + 31 NA intron (FBgn0263258, intron 1 of 8) protein_coding-intron (FBgn0263258, intron 1 of 8) 7094 FBgn0030863 FBgn0030863 FBtr0074476 CG8188 protein_coding CTCF-S2-jox2017_R1_peak_1697 chrUextra 28616554 28616790 + 31 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1525 chrU 2466885 2467109 + 31 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1065 chr3R 367811 368160 + 31 NA exon (FBgn0037260, exon 2 of 2) protein_coding-exon (FBgn0037260, exon 2 of 2) 907 FBgn0037260 FBgn0037260 FBtr0303866 Mur82C protein_coding CTCF-S2-jox2017_R1_peak_745 chr3L 6567904 6568049 + 31 NA intron (FBgn0263973, intron 2 of 7) protein_coding-intron (FBgn0042185, intron 3 of 7) 14603 FBgn0263973 FBgn0263973 FBtr0307514 jv protein_coding CTCF-S2-jox2017_R1_peak_1401 chr3R 23116489 23116689 + 31 NA TTS (FBgn0040609) protein_coding-TTS (FBgn0040609) 1322 FBgn0040609 FBgn0040609 FBtr0085172 CG3348 protein_coding CTCF-S2-jox2017_R1_peak_833 chr3L 11112951 11113111 + 31 NA promoter-TSS (FBgn0036135) protein_coding-promoter-TSS (FBgn0036135) 844 FBgn0036134 FBgn0036134 FBtr0300785 fd68A protein_coding CTCF-S2-jox2017_R1_peak_1279 chr3R 14796038 14796332 + 31 NA intron (FBgn0263983, intron 6 of 14) protein_coding-intron (FBgn0261262, intron 10 of 18) 8346 FBgn0038665 FBgn0038665 FBtr0304691 CG12269 protein_coding CTCF-S2-jox2017_R1_peak_1618 chrUextra 20554761 20555031 + 31 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_302 chr2L 21108816 21108961 + 31 NA intron (FBgn0040297, intron 1 of 20) protein_coding-intron (FBgn0040297, intron 1 of 19) 929 FBgn0040297 FBgn0040297 FBtr0299911 Nhe2 protein_coding CTCF-S2-jox2017_R1_peak_74 chr2L 5237576 5237721 + 31 NA promoter-TSS (FBgn0003716) protein_coding-promoter-TSS (FBgn0003716) -290 FBgn0003716 FBgn0003716 FBtr0079089 tkv protein_coding CTCF-S2-jox2017_R1_peak_1700 chrUextra 28630788 28631030 + 31 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_975 chr3L 19694271 19694416 + 31 NA exon (FBgn0260653, exon 4 of 4) protein_coding-exon (FBgn0260653, exon 4 of 4) -5984 FBgn0261341 FBgn0261341 FBtr0302335 verm protein_coding CTCF-S2-jox2017_R1_peak_1507 chrU 158783 159014 + 31 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_632 chr2RHet 537476 537647 + 31 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1703 chrUextra 28641220 28641453 + 31 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1511 chrU 625901 626081 + 31 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_115 chr2L 7861969 7862196 + 31 NA Intergenic Intergenic -1244 FBgn0031957 FBgn0031957 FBtr0079563 TwdlE protein_coding CTCF-S2-jox2017_R1_peak_671 chr3L 2325381 2325526 + 31 NA intron (FBgn0035331, intron 2 of 4) protein_coding-intron (FBgn0035331, intron 2 of 4) 2760 FBgn0035331 FBgn0035331 FBtr0330187 DmsR-1 protein_coding CTCF-S2-jox2017_R1_peak_1122 chr3R 4581455 4581815 + 31 NA TTS (FBgn0037624) protein_coding-TTS (FBgn0037624) -3172 FBgn0083971 FBgn0083971 FBtr0330121 CG34135 protein_coding CTCF-S2-jox2017_R1_peak_132 chr2L 9323245 9323417 + 31 NA Intergenic Intergenic -4413 FBgn0032109 FBgn0032109 FBtr0273186 CG17005 protein_coding CTCF-S2-jox2017_R1_peak_1529 chrU 3238036 3238241 + 30 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_710 chr3L 4431771 4432131 + 30 NA intron (FBgn0000038, intron 2 of 6) protein_coding-intron (FBgn0000038, intron 2 of 6) 2602 FBgn0000038 FBgn0000038 FBtr0073300 nAcRbeta-64B protein_coding CTCF-S2-jox2017_R1_peak_220 chr2L 14212354 14212499 + 30 NA intron (FBgn0016930, intron 4 of 10) protein_coding-intron (FBgn0016930, intron 3 of 9) 21696 FBgn0016930 FBgn0016930 FBtr0329933 smi35A protein_coding CTCF-S2-jox2017_R1_peak_734 chr3L 5727116 5727550 + 30 NA intron (FBgn0085447, intron 24 of 33) protein_coding-intron (FBgn0085447, intron 24 of 34) 13943 FBgn0086073 FBgn0086073 FBtr0114349 snoRNA:Me18S-A1494 snoRNA CTCF-S2-jox2017_R1_peak_282 chr2L 19425881 19426149 + 30 NA promoter-TSS (FBgn0032780) protein_coding-promoter-TSS (FBgn0032780) -307 FBgn0032780 FBgn0032780 FBtr0081203 CG13085 protein_coding CTCF-S2-jox2017_R1_peak_1944 chrX 13746323 13746468 + 30 NA exon (FBgn0030532, exon 4 of 4) protein_coding-exon (FBgn0030532, exon 4 of 4) 4762 FBgn0030532 FBgn0030532 FBtr0073829 CG11071 protein_coding CTCF-S2-jox2017_R1_peak_1390 chr3R 22182416 22182561 + 30 NA intron (FBgn0053970, intron 3 of 4) protein_coding-intron (FBgn0053970, intron 7 of 8) 1278 FBgn0053970 FBgn0053970 FBtr0100013 CG33970 protein_coding CTCF-S2-jox2017_R1_peak_1434 chr3R 25858102 25858262 + 30 NA intron (FBgn0026597, intron 3 of 8) protein_coding-intron (FBgn0026597, intron 6 of 12) 4386 FBgn0039740 FBgn0039740 FBtr0085600 CG7928 protein_coding CTCF-S2-jox2017_R1_peak_1717 chrUextra 28740089 28740330 + 30 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1648 chrUextra 26160141 26160381 + 30 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1290 chr3R 15584150 15584295 + 30 NA intron (FBgn0024963, intron 4 of 12) protein_coding-intron (FBgn0024963, intron 4 of 11) -14023 FBgn0263499 FBgn0263499 FBtr0309521 CR43488 ncRNA CTCF-S2-jox2017_R1_peak_214 chr2L 14054954 14055224 + 30 NA intron (FBgn0028875, intron 2 of 13) protein_coding-intron (FBgn0028875, intron 2 of 13) 7507 FBgn0260011 FBgn0260011 FBtr0080592 nimC4 protein_coding CTCF-S2-jox2017_R1_peak_1746 chrUextra 28901967 28902374 + 30 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_402 chr2R 6349278 6349444 + 30 NA exon (FBgn0001122, exon 8 of 8) protein_coding-exon (FBgn0001122, exon 8 of 8) 2693 FBgn0001122 FBgn0001122 FBtr0333064 G-oalpha47A protein_coding CTCF-S2-jox2017_R1_peak_393 chr2R 6029782 6029927 + 30 NA promoter-TSS (FBgn0033491) protein_coding-promoter-TSS (FBgn0033491) 9 FBgn0033491 FBgn0033491 FBtr0088332 CG18011 protein_coding CTCF-S2-jox2017_R1_peak_1388 chr3R 21962910 21963253 + 30 NA TTS (FBgn0039415) protein_coding-TTS (FBgn0039415) 4205 FBgn0039415 FBgn0039415 FBtr0084987 CG6142 protein_coding CTCF-S2-jox2017_R1_peak_1887 chrX 9372765 9372910 + 30 NA intron (FBgn0261260, intron 1 of 2) protein_coding-intron (FBgn0261260, intron 1 of 14) 17384 FBgn0261260 FBgn0261260 FBtr0302154 mgl protein_coding CTCF-S2-jox2017_R1_peak_717 chr3L 4800874 4801058 + 30 NA Intergenic Intergenic 4308 FBgn0035575 FBgn0035575 FBtr0073362 CG7509 protein_coding CTCF-S2-jox2017_R1_peak_1409 chr3R 24142978 24143123 + 30 NA TTS (FBgn0261618) protein_coding-TTS (FBgn0261618) -12723 FBgn0039577 FBgn0039577 FBtr0301672 CG12516 protein_coding CTCF-S2-jox2017_R1_peak_944 chr3L 18015777 18016024 + 30 NA intron (FBgn0000568, intron 3 of 7) protein_coding-intron (FBgn0000568, intron 1 of 5) -17517 FBgn0052192 FBgn0052192 FBtr0300047 CG32192 protein_coding CTCF-S2-jox2017_R1_peak_797 chr3L 9601399 9601890 + 30 NA exon (FBgn0036017, exon 13 of 18) protein_coding-exon (FBgn0036017, exon 13 of 18) 4943 FBgn0036017 FBgn0036017 FBtr0304601 CG3280 protein_coding CTCF-S2-jox2017_R1_peak_1794 chrX 2553658 2553803 + 30 NA exon (FBgn0003371, exon 1 of 9) protein_coding-exon (FBgn0003371, exon 1 of 9) 16680 FBgn0003371 FBgn0003371 FBtr0112828 sgg protein_coding CTCF-S2-jox2017_R1_peak_777 chr3L 8629692 8629862 + 30 NA TTS (FBgn0035917) protein_coding-TTS (FBgn0035917) -2608 FBgn0035918 FBgn0035918 FBtr0076647 Cdc6 protein_coding CTCF-S2-jox2017_R1_peak_504 chr2R 12255074 12255219 + 30 NA Intergenic Intergenic -3334 FBgn0034122 FBgn0034122 FBtr0087167 CG15711 protein_coding CTCF-S2-jox2017_R1_peak_1528 chrU 3235364 3235643 + 30 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1536 chrU 7678515 7678660 + 30 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1206 chr3R 10149604 10149749 + 30 NA intron (FBgn0038223, intron 3 of 3) protein_coding-intron (FBgn0038223, intron 3 of 3) 2751 FBgn0038223 FBgn0038223 FBtr0273391 Afti protein_coding CTCF-S2-jox2017_R1_peak_185 chr2L 12123518 12123663 + 30 NA intron (FBgn0032414, intron 1 of 5) protein_coding-intron (FBgn0032414, intron 1 of 5) 9230 FBgn0032414 FBgn0032414 FBtr0080336 CG17211 protein_coding CTCF-S2-jox2017_R1_peak_496 chr2R 11667635 11667799 + 30 NA TTS (FBgn0083919) protein_coding-TTS (FBgn0083919) 34733 FBgn0083919 FBgn0083919 FBtr0329910 Zasp52 protein_coding CTCF-S2-jox2017_R1_peak_1572 chrUextra 8366538 8366779 + 30 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1478 chr3RHet 2505297 2505479 + 30 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_759 chr3L 7006816 7006961 + 29 NA promoter-TSS (FBgn0260660) protein_coding-promoter-TSS (FBgn0260660) 13006 FBgn0035730 FBgn0035730 FBtr0076932 CG17744 protein_coding CTCF-S2-jox2017_R1_peak_1085 chr3R 1824708 1824874 + 29 NA Intergenic Intergenic 9510 FBgn0003261 FBgn0003261 FBtr0078654 Rm62 protein_coding CTCF-S2-jox2017_R1_peak_34 chr2L 2544874 2545019 + 29 NA Intergenic Intergenic 7898 FBgn0031431 FBgn0031431 FBtr0077750 CG3515 protein_coding CTCF-S2-jox2017_R1_peak_234 chr2L 15627838 15627983 + 29 NA promoter-TSS (FBgn0028945) protein_coding-promoter-TSS (FBgn0028945) -774 FBgn0028945 FBgn0028945 FBtr0080754 CG7631 protein_coding CTCF-S2-jox2017_R1_peak_1802 chrX 2963349 2963539 + 29 NA intron (FBgn0028369, intron 5 of 10) protein_coding-intron (FBgn0028369, intron 7 of 12) -1929 FBgn0029649 FBgn0029649 FBtr0332494 CG4116 protein_coding CTCF-S2-jox2017_R1_peak_1682 chrUextra 28357882 28358126 + 29 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1535 chrU 7544624 7544946 + 29 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1143 chr3R 5743291 5743436 + 29 NA intron (FBgn0263097, intron 1 of 6) protein_coding-intron (FBgn0263097, intron 1 of 6) 42960 FBgn0263097 FBgn0263097 FBtr0114583 Glut4EF protein_coding CTCF-S2-jox2017_R1_peak_2000 chrX 17776952 17777168 + 29 NA promoter-TSS (FBgn0030881) protein_coding-promoter-TSS (FBgn0030881) -691 FBgn0030881 FBgn0030881 FBtr0074494 CG12985 protein_coding CTCF-S2-jox2017_R1_peak_887 chr3L 14437324 14437473 + 29 NA intron (FBgn0087007, intron 1 of 6) protein_coding-intron (FBgn0087007, intron 4 of 8) 33672 FBgn0036423 FBgn0036423 FBtr0333040 CG3919 protein_coding CTCF-S2-jox2017_R1_peak_1918 chrX 11929349 11929520 + 29 NA TTS (FBgn0030369) protein_coding-TTS (FBgn0030369) 2769 FBgn0030369 FBgn0030369 FBtr0073623 Cyp318a1 protein_coding CTCF-S2-jox2017_R1_peak_1806 chrX 3273880 3274039 + 29 NA intron (FBgn0262656, intron 2 of 2) protein_coding-intron (FBgn0262656, intron 2 of 2) 6767 FBgn0262656 FBgn0262656 FBtr0070525 dm protein_coding CTCF-S2-jox2017_R1_peak_208 chr2L 13465780 13465944 + 29 NA intron (FBgn0263354, intron 1 of 6) protein_coding-intron (FBgn0263354, intron 3 of 8) 4088 FBgn0263354 FBgn0263354 FBtr0303440 CG42784 protein_coding CTCF-S2-jox2017_R1_peak_955 chr3L 18658678 18658868 + 29 NA intron (FBgn0036801, intron 8 of 8) protein_coding-intron (FBgn0036801, intron 8 of 8) -1688 FBgn0260027 FBgn0260027 FBtr0300582 CG42495 protein_coding CTCF-S2-jox2017_R1_peak_1259 chr3R 13569644 13569789 + 29 NA intron (FBgn0038541, intron 4 of 5) protein_coding-intron (FBgn0038541, intron 3 of 4) 7383 FBgn0038541 FBgn0038541 FBtr0083512 TyrRII protein_coding CTCF-S2-jox2017_R1_peak_1070 chr3R 697324 697562 + 29 NA Intergenic Intergenic 6812 FBgn0020280 FBgn0020280 FBtr0078852 laf protein_coding CTCF-S2-jox2017_R1_peak_1872 chrX 7605382 7605543 + 29 NA Intergenic Intergenic 3654 FBgn0262979 FBgn0262979 FBtr0306815 CG43287 protein_coding CTCF-S2-jox2017_R1_peak_1841 chrX 5411055 5411303 + 29 NA promoter-TSS (FBgn0029771) protein_coding-promoter-TSS (FBgn0029771) -115 FBgn0029771 FBgn0029771 FBtr0070780 CG12730 protein_coding CTCF-S2-jox2017_R1_peak_699 chr3L 3819071 3819216 + 29 NA TTS (FBgn0004888) protein_coding-TTS (FBgn0004888) 464 FBgn0004875 FBgn0004875 FBtr0112844 enc protein_coding CTCF-S2-jox2017_R1_peak_44 chr2L 3478264 3478411 + 29 NA promoter-TSS (FBgn0261560) protein_coding-promoter-TSS (FBgn0261560) -97 FBgn0261560 FBgn0261560 FBtr0077524 Thor protein_coding CTCF-S2-jox2017_R1_peak_1557 chrUextra 5828744 5828939 + 29 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1920 chrX 12200721 12200866 + 29 NA intron (FBgn0259240, intron 12 of 17) protein_coding-intron (FBgn0259240, intron 9 of 14) -66451 FBgn0030384 FBgn0030384 FBtr0073643 CG2577 protein_coding CTCF-S2-jox2017_R1_peak_49 chr2L 3683165 3683313 + 29 NA intron (FBgn0085369, intron 4 of 7) protein_coding-intron (FBgn0085369, intron 4 of 7) 9349 FBgn0031558 FBgn0031558 FBtr0077550 CG16704 protein_coding CTCF-S2-jox2017_R1_peak_1845 chrX 5507131 5507380 + 29 NA TTS (FBgn0263511) protein_coding-TTS (FBgn0263511) 1173 FBgn0085464 FBgn0085464 FBtr0112736 CG34435 protein_coding CTCF-S2-jox2017_R1_peak_326 chr2R 863413 863558 + 29 NA intron (FBgn0040849, intron 2 of 4) protein_coding-intron (FBgn0040849, intron 2 of 4) 26313 FBgn0040849 FBgn0040849 FBtr0299925 Ir41a protein_coding CTCF-S2-jox2017_R1_peak_187 chr2L 12274583 12274803 + 29 NA intron (FBgn0000114, intron 2 of 8) protein_coding-intron (FBgn0000114, intron 3 of 11) -64155 FBgn0051862 FBgn0051862 FBtr0080350 CG31862 protein_coding CTCF-S2-jox2017_R1_peak_1564 chrUextra 7274115 7274354 + 29 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_608 chr2R 19829888 19830033 + 29 NA promoter-TSS (FBgn0001123) protein_coding-promoter-TSS (FBgn0001123) -117 FBgn0001123 FBgn0001123 FBtr0301411 G-salpha60A protein_coding CTCF-S2-jox2017_R1_peak_1195 chr3R 9066594 9066739 + 29 NA intron (FBgn0000024, intron 6 of 10) protein_coding-intron (FBgn0000024, intron 5 of 9) 18574 FBgn0000024 FBgn0000024 FBtr0082780 Ace protein_coding CTCF-S2-jox2017_R1_peak_1421 chr3R 24965549 24965694 + 29 NA intron (FBgn0039640, intron 1 of 6) protein_coding-intron (FBgn0039640, intron 1 of 6) 1002 FBgn0039640 FBgn0039640 FBtr0085383 CG14516 protein_coding CTCF-S2-jox2017_R1_peak_179 chr2L 11904305 11904640 + 29 NA intron (FBgn0259225, intron 3 of 9) protein_coding-intron (FBgn0259225, intron 3 of 9) -30033 FBgn0026392 FBgn0026392 FBtr0080278 Or33a protein_coding CTCF-S2-jox2017_R1_peak_1864 chrX 7193976 7194121 + 29 NA intron (FBgn0029941, intron 2 of 6) protein_coding-intron (FBgn0029941, intron 2 of 6) -7926 FBgn0024250 FBgn0024250 FBtr0071048 brk protein_coding CTCF-S2-jox2017_R1_peak_906 chr3L 15648142 15648439 + 29 NA exon (FBgn0004592, exon 2 of 2) protein_coding-exon (FBgn0004592, exon 2 of 2) 820 FBgn0004592 FBgn0004592 FBtr0075585 Eig71Ee protein_coding CTCF-S2-jox2017_R1_peak_894 chr3L 14910771 14910923 + 29 NA intron (FBgn0259099, intron 1 of 10) protein_coding-intron (FBgn0259099, intron 1 of 10) 13942 FBgn0259099 FBgn0259099 FBtr0330139 DCX-EMAP protein_coding CTCF-S2-jox2017_R1_peak_1222 chr3R 11556040 11556571 + 29 NA Intergenic Intergenic -1163 FBgn0085303 FBgn0085303 FBtr0112469 CG34274 protein_coding CTCF-S2-jox2017_R1_peak_1261 chr3R 13673043 13673362 + 29 NA intron (FBgn0261649, intron 3 of 9) protein_coding-intron (FBgn0261649, intron 3 of 9) 35936 FBgn0261649 FBgn0261649 FBtr0304905 tinc protein_coding CTCF-S2-jox2017_R1_peak_1676 chrUextra 28228312 28228556 + 29 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1962 chrX 14897869 14898026 + 29 NA intron (FBgn0000535, intron 16 of 16) protein_coding-intron (FBgn0000535, intron 16 of 16) -20520 FBgn0052594 FBgn0052594 FBtr0310270 be protein_coding CTCF-S2-jox2017_R1_peak_37 chr2L 2943281 2943446 + 29 NA intron (FBgn0041111, intron 3 of 12) protein_coding-intron (FBgn0041111, intron 3 of 12) -13548 FBgn0010263 FBgn0010263 FBtr0077640 Rbp9 protein_coding CTCF-S2-jox2017_R1_peak_1013 chr3L 22632743 22632888 + 29 NA Intergenic Intergenic -1799 FBgn0037171 FBgn0037171 FBtr0331779 CG14459 protein_coding CTCF-S2-jox2017_R1_peak_1519 chrU 1400389 1401044 + 29 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_959 chr3L 18782817 18782963 + 29 NA intron (FBgn0001078, intron 2 of 9) protein_coding-intron (FBgn0001078, intron 2 of 9) -24046 FBgn0001078 FBgn0001078 FBtr0075087 ftz-f1 protein_coding CTCF-S2-jox2017_R1_peak_1297 chr3R 15895509 15895656 + 29 NA Intergenic Intergenic 12110 FBgn0038772 FBgn0038772 FBtr0083835 CG4973 protein_coding CTCF-S2-jox2017_R1_peak_79 chr2L 5705584 5705737 + 28 NA Intergenic Intergenic -6299 FBgn0031730 FBgn0031730 FBtr0302950 CG7236 protein_coding CTCF-S2-jox2017_R1_peak_1030 chr3L 24112517 24112669 + 28 NA intron (FBgn0011288, intron 2 of 6) protein_coding-intron (FBgn0011288, intron 2 of 7) 45264 FBgn0011288 FBgn0011288 FBtr0304626 Snap25 protein_coding CTCF-S2-jox2017_R1_peak_1516 chrU 1235441 1236181 + 28 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1530 chrU 3569378 3569523 + 28 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1246 chr3R 12759963 12760283 + 28 NA exon (FBgn0000015, exon 1 of 5) protein_coding-exon (FBgn0000015, exon 1 of 5) -2788 FBgn0000015 FBgn0000015 FBtr0330709 Abd-B protein_coding CTCF-S2-jox2017_R1_peak_1979 chrX 16069214 16069369 + 28 NA Intergenic Intergenic 16033 FBgn0262283 FBgn0262283 FBtr0304409 mir-985 pre_miRNA CTCF-S2-jox2017_R1_peak_319 chr2R 181212 181416 + 28 NA Intergenic Intergenic -50870 FBgn0262117 FBgn0262117 FBtr0111269 IntS3 protein_coding CTCF-S2-jox2017_R1_peak_1252 chr3R 12979947 12980127 + 28 NA exon (FBgn0038492, exon 1 of 2) protein_coding-exon (FBgn0038492, exon 1 of 2) 2449 FBgn0038491 FBgn0038491 FBtr0083410 CG5292 protein_coding CTCF-S2-jox2017_R1_peak_1731 chrUextra 28829101 28829384 + 28 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_696 chr3L 3758905 3759113 + 28 NA exon (FBgn0052264, exon 1 of 7) protein_coding-exon (FBgn0052264, exon 1 of 7) -3808 FBgn0035458 FBgn0035458 FBtr0303094 CG10858 protein_coding CTCF-S2-jox2017_R1_peak_1801 chrX 2844578 2844723 + 28 NA intron (FBgn0028369, intron 3 of 11) protein_coding-intron (FBgn0028369, intron 3 of 12) 2583 FBgn0029648 FBgn0029648 FBtr0070558 CG3603 protein_coding CTCF-S2-jox2017_R1_peak_1177 chr3R 7277318 7277463 + 28 NA promoter-TSS (FBgn0051374) protein_coding-promoter-TSS (FBgn0051374) -535 FBgn0051374 FBgn0051374 FBtr0082400 sals protein_coding CTCF-S2-jox2017_R1_peak_1732 chrUextra 28830818 28831057 + 28 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1792 chrX 2248271 2248437 + 28 NA promoter-TSS (FBgn0003159) protein_coding-promoter-TSS (FBgn0003159) 405 FBgn0003159 FBgn0003159 FBtr0070402 ptr protein_coding CTCF-S2-jox2017_R1_peak_1351 chr3R 19483594 19483810 + 28 NA intron (FBgn0051145, intron 2 of 13) protein_coding-intron (FBgn0051145, intron 2 of 13) 11676 FBgn0051145 FBgn0051145 FBtr0290057 CG31145 protein_coding CTCF-S2-jox2017_R1_peak_1542 chrUextra 298511 298763 + 28 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1031 chr3L 24163525 24163729 + 28 NA intron (FBgn0011288, intron 4 of 7) protein_coding-intron (FBgn0011288, intron 4 of 7) 96298 FBgn0011288 FBgn0011288 FBtr0304626 Snap25 protein_coding CTCF-S2-jox2017_R1_peak_1671 chrUextra 28073747 28073987 + 28 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1524 chrU 2325136 2325281 + 28 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_123 chr2L 8184919 8185276 + 28 NA intron (FBgn0031993, intron 20 of 27) protein_coding-intron (FBgn0031993, intron 22 of 29) 4875 FBgn0013442 FBgn0013442 FBtr0273229 fos28F protein_coding CTCF-S2-jox2017_R1_peak_372 chr2R 4734630 4734775 + 28 NA intron (FBgn0024189, intron 21 of 21) protein_coding-intron (FBgn0024189, intron 20 of 20) -13167 FBgn0011286 FBgn0011286 FBtr0308083 Rya-r44F protein_coding CTCF-S2-jox2017_R1_peak_1585 chrUextra 11675823 11676095 + 28 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1749 chrUextra 28912126 28912271 + 28 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1997 chrX 17660218 17660377 + 28 NA Intergenic Intergenic -3119 FBgn0024184 FBgn0024184 FBtr0074460 unc-4 protein_coding CTCF-S2-jox2017_R1_peak_434 chr2R 8019752 8019897 + 28 NA Intergenic Intergenic -6376 FBgn0033683 FBgn0033683 FBtr0087982 CG18343 protein_coding CTCF-S2-jox2017_R1_peak_1917 chrX 11876049 11876194 + 28 NA promoter-TSS (FBgn0263111) protein_coding-promoter-TSS (FBgn0263111) -912 FBgn0263111 FBgn0263111 FBtr0332391 cac protein_coding CTCF-S2-jox2017_R1_peak_930 chr3L 17146214 17146359 + 28 NA intron (FBgn0260943, intron 6 of 14) protein_coding-intron (FBgn0260943, intron 6 of 14) -13677 FBgn0263381 FBgn0263381 FBtr0309067 CR43433 ncRNA CTCF-S2-jox2017_R1_peak_638 chr2RHet 2843255 2843691 + 28 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1469 chr3RHet 1915042 1915356 + 28 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_615 chr2R 20653847 20654010 + 28 NA TTS (FBgn0027590) protein_coding-TTS (FBgn0027590) 1769 FBgn0027590 FBgn0027590 FBtr0305310 CG16936 protein_coding CTCF-S2-jox2017_R1_peak_813 chr3L 10274882 10275241 + 28 NA Intergenic Intergenic 8757 FBgn0036080 FBgn0036080 FBtr0076297 Or67d protein_coding CTCF-S2-jox2017_R1_peak_1743 chrUextra 28887064 28887302 + 28 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_50 chr2L 3785479 3785675 + 28 NA promoter-TSS (FBgn0051958) protein_coding-promoter-TSS (FBgn0051958) -242 FBgn0051958 FBgn0051958 FBtr0077495 CG31958 protein_coding CTCF-S2-jox2017_R1_peak_1898 chrX 9928430 9928578 + 28 NA exon (FBgn0263132, exon 9 of 14) protein_coding-exon (FBgn0263132, exon 9 of 14) 16810 FBgn0263132 FBgn0263132 FBtr0307374 Cht6 protein_coding CTCF-S2-jox2017_R1_peak_1966 chrX 15118489 15118634 + 28 NA Intergenic Intergenic -1030 FBgn0262486 FBgn0262486 FBtr0304837 CG43076 protein_coding CTCF-S2-jox2017_R1_peak_1333 chr3R 18103169 18103319 + 28 NA intron (FBgn0051163, intron 4 of 18) protein_coding-intron (FBgn0051163, intron 4 of 18) -15404 FBgn0262382 FBgn0262382 FBtr0304229 mir-1010 pre_miRNA CTCF-S2-jox2017_R1_peak_246 chr2L 17092853 17092998 + 28 NA Intergenic Intergenic 5284 FBgn0032626 FBgn0032626 FBtr0080953 CG12620 protein_coding CTCF-S2-jox2017_R1_peak_157 chr2L 10033112 10033257 + 28 NA intron (FBgn0027600, intron 2 of 5) protein_coding-intron (FBgn0027600, intron 2 of 5) 490 FBgn0027600 FBgn0027600 FBtr0079934 obst-B protein_coding CTCF-S2-jox2017_R1_peak_1356 chr3R 19806727 19806922 + 28 NA TTS (FBgn0051140) protein_coding-TTS (FBgn0051140) -2401 FBgn0051451 FBgn0051451 FBtr0308922 CR31451 ncRNA CTCF-S2-jox2017_R1_peak_1138 chr3R 5453697 5453853 + 28 NA TTS (FBgn0005585) protein_coding-TTS (FBgn0005585) 732 FBgn0037722 FBgn0037722 FBtr0082077 CG8319 protein_coding CTCF-S2-jox2017_R1_peak_1027 chr3L 23950542 23950721 + 28 NA intron (FBgn0058470, intron 2 of 12) protein_coding-intron (FBgn0058470, intron 2 of 12) 28879 FBgn0058470 FBgn0058470 FBtr0111152 CG40470 protein_coding CTCF-S2-jox2017_R1_peak_801 chr3L 9780599 9780765 + 28 NA TTS (FBgn0036044) protein_coding-TTS (FBgn0036044) 10105 FBgn0036044 FBgn0036044 FBtr0310626 CG14168 protein_coding CTCF-S2-jox2017_R1_peak_1730 chrUextra 28821448 28821767 + 28 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1440 chr3R 26403137 26403282 + 27 NA exon (FBgn0082582, exon 7 of 8) protein_coding-exon (FBgn0082582, exon 7 of 8) -1942 FBgn0039787 FBgn0039787 FBtr0085664 CG9702 protein_coding CTCF-S2-jox2017_R1_peak_2011 chrX 18429605 18429753 + 27 NA intron (FBgn0000242, intron 1 of 3) protein_coding-intron (FBgn0000242, intron 1 of 3) 6957 FBgn0030938 FBgn0030938 FBtr0074596 CG15047 protein_coding CTCF-S2-jox2017_R1_peak_1458 chr3RHet 838528 838713 + 27 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1272 chr3R 13956334 13956706 + 27 NA exon (FBgn0003499, exon 5 of 5) protein_coding-exon (FBgn0003499, exon 5 of 5) -21322 FBgn0038567 FBgn0038567 FBtr0083546 CG14316 protein_coding CTCF-S2-jox2017_R1_peak_841 chr3L 11505594 11505946 + 27 NA exon (FBgn0003373, exon 2 of 2) protein_coding-exon (FBgn0003373, exon 2 of 2) 449 FBgn0003373 FBgn0003373 FBtr0076096 Sgs3 protein_coding CTCF-S2-jox2017_R1_peak_463 chr2R 9852060 9852212 + 27 NA promoter-TSS (FBgn0013770) protein_coding-promoter-TSS (FBgn0013770) -37 FBgn0261975 FBgn0261975 FBtr0304022 CG42806 protein_coding CTCF-S2-jox2017_R1_peak_498 chr2R 11703526 11703834 + 27 NA intron (FBgn0083919, intron 1 of 15) protein_coding-intron (FBgn0083919, intron 1 of 15) -1230 FBgn0083919 FBgn0083919 FBtr0329910 Zasp52 protein_coding CTCF-S2-jox2017_R1_peak_720 chr3L 4849511 4849656 + 27 NA exon (FBgn0052237, exon 2 of 2) protein_coding-exon (FBgn0052237, exon 2 of 2) 2878 FBgn0052237 FBgn0052237 FBtr0073356 CG32237 protein_coding CTCF-S2-jox2017_R1_peak_749 chr3L 6730810 6731194 + 27 NA TTS (FBgn0261934) protein_coding-TTS (FBgn0261934) 5262 FBgn0261934 FBgn0261934 FBtr0303748 dikar protein_coding CTCF-S2-jox2017_R1_peak_407 chr2R 6439509 6439654 + 27 NA Intergenic Intergenic -5812 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding CTCF-S2-jox2017_R1_peak_1750 chrUextra 28915648 28915886 + 27 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_310 chr2L 21860706 21860854 + 27 NA Intergenic Intergenic 32187 FBgn0003866 FBgn0003866 FBtr0085906 tsh protein_coding CTCF-S2-jox2017_R1_peak_1763 chrUextra 28981811 28982053 + 27 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_517 chr2R 13246761 13246923 + 27 NA exon (FBgn0261642, exon 5 of 5) protein_coding-exon (FBgn0261642, exon 5 of 5) 32508 FBgn0050232 FBgn0050232 FBtr0086965 tRNA:CR30232 tRNA CTCF-S2-jox2017_R1_peak_1789 chrX 2006834 2006979 + 27 NA exon (FBgn0000382, exon 11 of 11) protein_coding-exon (FBgn0000382, exon 11 of 11) 10258 FBgn0004860 FBgn0004860 FBtr0070433 ph-d protein_coding CTCF-S2-jox2017_R1_peak_1702 chrUextra 28633355 28633605 + 27 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1687 chrUextra 28498995 28499180 + 27 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_774 chr3L 8367874 8368019 + 27 NA exon (FBgn0001253, exon 2 of 7) protein_coding-exon (FBgn0001253, exon 2 of 7) 2441 FBgn0001253 FBgn0001253 FBtr0076607 ImpE1 protein_coding CTCF-S2-jox2017_R1_peak_1354 chr3R 19721239 19721486 + 27 NA intron (FBgn0016754, intron 7 of 7) protein_coding-intron (FBgn0016754, intron 8 of 8) -2257 FBgn0039124 FBgn0039124 FBtr0084525 CG13597 protein_coding CTCF-S2-jox2017_R1_peak_1967 chrX 15127743 15127888 + 27 NA Intergenic Intergenic -3907 FBgn0030622 FBgn0030622 FBtr0074024 CG9101 protein_coding CTCF-S2-jox2017_R1_peak_23 chr2L 1346174 1346319 + 27 NA Intergenic Intergenic 1766 FBgn0026141 FBgn0026141 FBtr0305553 Cdlc2 protein_coding CTCF-S2-jox2017_R1_peak_2002 chrX 17837912 17838216 + 27 NA intron (FBgn0003380, intron 9 of 11) protein_coding-intron (FBgn0003380, intron 10 of 12) 23194 FBgn0003380 FBgn0003380 FBtr0089663 Sh protein_coding CTCF-S2-jox2017_R1_peak_2015 chrX 18515991 18516160 + 27 NA TTS (FBgn0262981) protein_coding-TTS (FBgn0262981) 544 FBgn0262981 FBgn0262981 FBtr0306817 CG43289 protein_coding CTCF-S2-jox2017_R1_peak_1201 chr3R 9794709 9794896 + 27 NA exon (FBgn0264493, exon 8 of 8) protein_coding-exon (FBgn0264493, exon 8 of 8) -2653 FBgn0263414 FBgn0263414 FBtr0309198 CR43460 ncRNA CTCF-S2-jox2017_R1_peak_1032 chr3L 24227162 24227312 + 27 NA intron (FBgn0011288, intron 5 of 6) protein_coding-intron (FBgn0011288, intron 5 of 7) -90730 FBgn0259697 FBgn0259697 FBtr0113473 nvd protein_coding CTCF-S2-jox2017_R1_peak_656 chr3L 760775 760920 + 27 NA Intergenic Intergenic -5358 FBgn0035160 FBgn0035160 FBtr0072601 CG13897 protein_coding CTCF-S2-jox2017_R1_peak_1946 chrX 13861753 13861945 + 27 NA promoter-TSS (FBgn0263115) protein_coding-promoter-TSS (FBgn0263115) 12565 FBgn0030536 FBgn0030536 FBtr0073854 CG11068 protein_coding CTCF-S2-jox2017_R1_peak_93 chr2L 6584499 6584669 + 27 NA intron (FBgn0031835, intron 2 of 15) protein_coding-intron (FBgn0031835, intron 2 of 15) 16482 FBgn0031835 FBgn0031835 FBtr0089641 CG11319 protein_coding CTCF-S2-jox2017_R1_peak_1367 chr3R 20513590 20513814 + 27 NA intron (FBgn0003429, intron 11 of 26) protein_coding-intron (FBgn0003429, intron 9 of 24) 17616 FBgn0261637 FBgn0261637 FBtr0303007 CG42720 protein_coding CTCF-S2-jox2017_R1_peak_1678 chrUextra 28309341 28309579 + 27 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_702 chr3L 3882474 3882654 + 27 NA Intergenic Intergenic 2237 FBgn0264518 FBgn0264518 FBtr0333143 CR43917 ncRNA CTCF-S2-jox2017_R1_peak_934 chr3L 17285384 17285533 + 26 NA Intergenic Intergenic -22666 FBgn0262376 FBgn0262376 FBtr0304211 mir-219 pre_miRNA CTCF-S2-jox2017_R1_peak_1045 chr3LHet 1289135 1289280 + 26 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_827 chr3L 10910491 10911071 + 26 NA Intergenic Intergenic -18558 FBgn0036111 FBgn0036111 FBtr0076251 Aps protein_coding CTCF-S2-jox2017_R1_peak_2007 chrX 18095637 18095819 + 26 NA exon (FBgn0083228, exon 8 of 8) protein_coding-exon (FBgn0083228, exon 8 of 8) 3449 FBgn0030899 FBgn0030899 FBtr0074590 Her protein_coding CTCF-S2-jox2017_R1_peak_327 chr2R 1291315 1291468 + 26 NA Intergenic Intergenic -12466 FBgn0259247 FBgn0259247 FBtr0301063 laccase2 protein_coding CTCF-S2-jox2017_R1_peak_1387 chr3R 21859280 21859453 + 26 NA exon (FBgn0002632, exon 1 of 1) protein_coding-exon (FBgn0002632, exon 1 of 1) 733 FBgn0002632 FBgn0002632 FBtr0084959 m6 protein_coding CTCF-S2-jox2017_R1_peak_160 chr2L 10459049 10459305 + 26 NA exon (FBgn0027611, exon 4 of 10) protein_coding-exon (FBgn0027611, exon 4 of 10) 1521 FBgn0027611 FBgn0027611 FBtr0080031 CG6206 protein_coding CTCF-S2-jox2017_R1_peak_1049 chr3LHet 1818196 1818341 + 26 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1830 chrX 4914359 4914510 + 26 NA Intergenic Intergenic 22862 FBgn0029740 FBgn0029740 FBtr0300018 CG12680 protein_coding CTCF-S2-jox2017_R1_peak_321 chr2R 299571 299731 + 26 NA intron (FBgn0260798, intron 7 of 15) protein_coding-intron (FBgn0260798, intron 6 of 14) 58907 FBgn0260798 FBgn0260798 FBtr0302242 Gprk1 protein_coding CTCF-S2-jox2017_R1_peak_624 chr2RHet 100117 100263 + 26 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_823 chr3L 10856243 10856433 + 26 NA intron (FBgn0026160, intron 1 of 10) protein_coding-intron (FBgn0026160, intron 1 of 10) 4834 FBgn0026160 FBgn0026160 FBtr0076268 tna protein_coding CTCF-S2-jox2017_R1_peak_1054 chr3LHet 2390559 2390724 + 26 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1754 chrUextra 28928591 28928834 + 26 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1548 chrUextra 2900694 2900928 + 26 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1935 chrX 13223631 13223886 + 26 NA promoter-TSS (FBgn0040309) protein_coding-promoter-TSS (FBgn0040309) -674 FBgn0040309 FBgn0040309 FBtr0073764 Jafrac1 protein_coding CTCF-S2-jox2017_R1_peak_1948 chrX 14316261 14316529 + 26 NA intron (FBgn0052600, intron 5 of 9) protein_coding-intron (FBgn0052600, intron 5 of 9) 42011 FBgn0030566 FBgn0030566 FBtr0073915 betaNACtes4 protein_coding CTCF-S2-jox2017_R1_peak_267 chr2L 18720342 18720538 + 26 NA intron (FBgn0032707, intron 1 of 1) protein_coding-intron (FBgn0032707, intron 1 of 1) -6677 FBgn0032706 FBgn0032706 FBtr0114486 Irk3 protein_coding CTCF-S2-jox2017_R1_peak_1090 chr3R 2133655 2134267 + 26 NA exon (FBgn0051556, exon 2 of 2) protein_coding-exon (FBgn0051556, exon 2 of 2) 1057 FBgn0051556 FBgn0051556 FBtr0078612 CG31556 protein_coding CTCF-S2-jox2017_R1_peak_41 chr2L 3335174 3335324 + 26 NA TTS (FBgn0031523) protein_coding-TTS (FBgn0031523) 2435 FBgn0031523 FBgn0031523 FBtr0304701 CG15408 protein_coding CTCF-S2-jox2017_R1_peak_540 chr2R 14900216 14900361 + 26 NA Intergenic Intergenic -17226 FBgn0263083 FBgn0263083 FBtr0307099 CG43351 protein_coding CTCF-S2-jox2017_R1_peak_161 chr2L 10603515 10603660 + 26 NA intron (FBgn0051721, intron 1 of 9) protein_coding-intron (FBgn0051721, intron 1 of 8) -21925 FBgn0085190 FBgn0085190 FBtr0112352 CG34161 protein_coding CTCF-S2-jox2017_R1_peak_1827 chrX 4580051 4580208 + 26 NA exon (FBgn0022768, exon 1 of 3) protein_coding-exon (FBgn0022768, exon 1 of 3) 775 FBgn0022768 FBgn0022768 FBtr0070685 Pp2C1 protein_coding CTCF-S2-jox2017_R1_peak_1173 chr3R 7112809 7112964 + 26 NA intron (FBgn0051386, intron 3 of 4) ncRNA-intron (FBgn0051386, intron 3 of 4) 18444 FBgn0051386 FBgn0051386 FBtr0308921 CR31386 ncRNA CTCF-S2-jox2017_R1_peak_471 chr2R 10307031 10307181 + 26 NA promoter-TSS (FBgn0033936) protein_coding-promoter-TSS (FBgn0033936) -740 FBgn0033936 FBgn0033936 FBtr0087488 CG17386 protein_coding CTCF-S2-jox2017_R1_peak_118 chr2L 8024495 8024640 + 26 NA exon (FBgn0031975, exon 2 of 3) protein_coding-exon (FBgn0031975, exon 2 of 3) -4895 FBgn0031977 FBgn0031977 FBtr0079535 baf protein_coding CTCF-S2-jox2017_R1_peak_1140 chr3R 5610275 5610441 + 26 NA promoter-TSS (FBgn0037754) protein_coding-promoter-TSS (FBgn0037754) -50 FBgn0037754 FBgn0037754 FBtr0082139 CG8500 protein_coding CTCF-S2-jox2017_R1_peak_1708 chrUextra 28676939 28677209 + 26 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1035 chr3L 24487261 24487609 + 26 NA Intergenic Intergenic -39754 FBgn0040045 FBgn0040045 FBtr0307117 CR12460 pseudogene CTCF-S2-jox2017_R1_peak_722 chr3L 5118470 5118628 + 26 NA Intergenic Intergenic -4225 FBgn0035594 FBgn0035594 FBtr0077162 CG4597 protein_coding CTCF-S2-jox2017_R1_peak_1943 chrX 13480739 13481238 + 26 NA intron (FBgn0086674, intron 7 of 7) protein_coding-intron (FBgn0086674, intron 7 of 7) 15548 FBgn0004169 FBgn0004169 FBtr0073853 up protein_coding CTCF-S2-jox2017_R1_peak_1940 chrX 13400393 13400574 + 26 NA intron (FBgn0052635, intron 10 of 10) protein_coding-intron (FBgn0052635, intron 10 of 10) -14053 FBgn0030491 FBgn0030491 FBtr0273441 CG15753 protein_coding CTCF-S2-jox2017_R1_peak_1974 chrX 15635599 15635765 + 26 NA exon (FBgn0030680, exon 2 of 2) protein_coding-exon (FBgn0030680, exon 2 of 2) 2407 FBgn0030679 FBgn0030679 FBtr0074085 CG8206 protein_coding CTCF-S2-jox2017_R1_peak_1202 chr3R 9843429 9843578 + 26 NA intron (FBgn0264493, intron 2 of 8) protein_coding-intron (FBgn0264493, intron 2 of 8) 8178 FBgn0264493 FBgn0264493 FBtr0301632 rdx protein_coding CTCF-S2-jox2017_R1_peak_1476 chr3RHet 2489145 2489408 + 26 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_350 chr2R 3211476 3211624 + 26 NA intron (FBgn0033159, intron 18 of 23) protein_coding-intron (FBgn0033159, intron 18 of 23) 12637 FBgn0033158 FBgn0033158 FBtr0088963 CG12164 protein_coding CTCF-S2-jox2017_R1_peak_1705 chrUextra 28658873 28659151 + 26 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_351 chr2R 3264250 3264410 + 25 NA intron (FBgn0033159, intron 2 of 23) protein_coding-intron (FBgn0033159, intron 2 of 23) 5044 FBgn0033159 FBgn0033159 FBtr0306787 Dscam protein_coding CTCF-S2-jox2017_R1_peak_1879 chrX 8695092 8695237 + 25 NA intron (FBgn0026411, intron 1 of 6) protein_coding-intron (FBgn0026411, intron 1 of 6) -15778 FBgn0026411 FBgn0026411 FBtr0071279 Lim1 protein_coding CTCF-S2-jox2017_R1_peak_1713 chrUextra 28732398 28732639 + 25 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1268 chr3R 13734924 13735211 + 25 NA exon (FBgn0053547, exon 3 of 27) protein_coding-exon (FBgn0053547, exon 3 of 27) -2031 FBgn0263399 FBgn0263399 FBtr0309175 CG43445 protein_coding CTCF-S2-jox2017_R1_peak_1660 chrUextra 27254450 27254595 + 25 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1048 chr3LHet 1690975 1691260 + 25 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_2004 chrX 18042028 18042241 + 25 NA Intergenic Intergenic -7267 FBgn0030897 FBgn0030897 FBtr0100239 Frq1 protein_coding CTCF-S2-jox2017_R1_peak_468 chr2R 10098847 10099173 + 25 NA exon (FBgn0005613, exon 1 of 3) protein_coding-exon (FBgn0005613, exon 1 of 3) 904 FBgn0005613 FBgn0005613 FBtr0087576 Sox15 protein_coding CTCF-S2-jox2017_R1_peak_1307 chr3R 16628347 16628584 + 25 NA intron (FBgn0038826, intron 8 of 8) protein_coding-intron (FBgn0038826, intron 11 of 11) 13458 FBgn0038827 FBgn0038827 FBtr0083995 Fancd2 protein_coding CTCF-S2-jox2017_R1_peak_678 chr3L 2820133 2820310 + 25 NA exon (FBgn0263392, exon 1 of 7) protein_coding-exon (FBgn0263392, exon 1 of 7) 37966 FBgn0035375 FBgn0035375 FBtr0333442 pgant6 protein_coding CTCF-S2-jox2017_R1_peak_374 chr2R 4883834 4884016 + 25 NA exon (FBgn0085379, exon 4 of 9) protein_coding-exon (FBgn0085379, exon 4 of 9) 10167 FBgn0085379 FBgn0085379 FBtr0112560 CG34350 protein_coding CTCF-S2-jox2017_R1_peak_1686 chrUextra 28477455 28477724 + 25 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1221 chr3R 11455889 11456034 + 25 NA Intergenic Intergenic -5229 FBgn0263040 FBgn0263040 FBtr0306929 CG43335 protein_coding CTCF-S2-jox2017_R1_peak_1855 chrX 6298839 6299082 + 25 NA Intergenic Intergenic -4827 FBgn0053669 FBgn0053669 FBtr0302419 CG33669 protein_coding CTCF-S2-jox2017_R1_peak_1832 chrX 4984972 4985477 + 25 NA intron (FBgn0086911, intron 2 of 28) protein_coding-intron (FBgn0086911, intron 2 of 29) 5358 FBgn0086911 FBgn0086911 FBtr0070745 rg protein_coding CTCF-S2-jox2017_R1_peak_950 chr3L 18180038 18180183 + 25 NA Intergenic Intergenic -1369 FBgn0003997 FBgn0003997 FBtr0332862 W protein_coding CTCF-S2-jox2017_R1_peak_1667 chrUextra 27757081 27757314 + 25 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_482 chr2R 10758706 10758979 + 25 NA promoter-TSS (FBgn0013773) protein_coding-promoter-TSS (FBgn0013773) -267 FBgn0022063 FBgn0022063 FBtr0302109 Pcf11 protein_coding CTCF-S2-jox2017_R1_peak_1938 chrX 13297879 13298024 + 25 NA promoter-TSS (FBgn0030484) protein_coding-promoter-TSS (FBgn0030484) -838 FBgn0030484 FBgn0030484 FBtr0073778 CG1681 protein_coding CTCF-S2-jox2017_R1_peak_1477 chr3RHet 2489612 2489757 + 25 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_213 chr2L 14024039 14024315 + 25 NA Intergenic Intergenic -2833 FBgn0028519 FBgn0028519 FBtr0080591 CG4500 protein_coding CTCF-S2-jox2017_R1_peak_536 chr2R 14693682 14693850 + 25 NA Intergenic Intergenic -3862 FBgn0010651 FBgn0010651 FBtr0086635 l(2)08717 protein_coding CTCF-S2-jox2017_R1_peak_1470 chr3RHet 2104661 2104899 + 25 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1046 chr3LHet 1289685 1290141 + 25 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1372 chr3R 20978667 20978812 + 25 NA Intergenic Intergenic 14940 FBgn0039283 FBgn0039283 FBtr0084780 danr protein_coding CTCF-S2-jox2017_R1_peak_723 chr3L 5157003 5157333 + 25 NA intron (FBgn0052423, intron 7 of 11) protein_coding-intron (FBgn0052423, intron 6 of 10) 11390 FBgn0010747 FBgn0010747 FBtr0077169 Srp54k protein_coding CTCF-S2-jox2017_R1_peak_1275 chr3R 14443107 14443280 + 25 NA promoter-TSS (FBgn0038631) protein_coding-promoter-TSS (FBgn0038631) 40 FBgn0038631 FBgn0038631 FBtr0083694 CG7695 protein_coding CTCF-S2-jox2017_R1_peak_1082 chr3R 1510572 1510717 + 25 NA intron (FBgn0037364, intron 1 of 2) protein_coding-intron (FBgn0037364, intron 1 of 2) 504 FBgn0037364 FBgn0037364 FBtr0078727 Rab23 protein_coding CTCF-S2-jox2017_R1_peak_1321 chr3R 17113760 17113905 + 25 NA intron (FBgn0038880, intron 3 of 5) protein_coding-intron (FBgn0038880, intron 3 of 5) 4913 FBgn0038879 FBgn0038879 FBtr0084056 CG17298 protein_coding CTCF-S2-jox2017_R1_peak_1460 chr3RHet 1030194 1030339 + 25 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1215 chr3R 11098799 11099350 + 25 NA exon (FBgn0000283, exon 3 of 5) protein_coding-exon (FBgn0000283, exon 3 of 5) 1438 FBgn0000283 FBgn0000283 FBtr0083127 Cp190 protein_coding CTCF-S2-jox2017_R1_peak_352 chr2R 3290710 3290883 + 25 NA promoter-TSS (FBgn0262948) protein_coding-promoter-TSS (FBgn0262948) 534 FBgn0262583 FBgn0262583 FBtr0305124 CG43123 protein_coding CTCF-S2-jox2017_R1_peak_384 chr2R 5484273 5484418 + 25 NA exon (FBgn0261016, exon 6 of 13) protein_coding-exon (FBgn0261016, exon 6 of 13) 2793 FBgn0050338 FBgn0050338 FBtr0088533 CG30338 protein_coding CTCF-S2-jox2017_R1_peak_529 chr2R 14416291 14416521 + 25 NA intron (FBgn0034356, intron 1 of 1) protein_coding-intron (FBgn0034356, intron 1 of 1) -3507 FBgn0034356 FBgn0034356 FBtr0113093 CG10924 protein_coding CTCF-S2-jox2017_R1_peak_332 chr2R 1564389 1564534 + 25 NA exon (FBgn0033033, exon 7 of 7) protein_coding-exon (FBgn0033033, exon 7 of 7) 5184 FBgn0033032 FBgn0033032 FBtr0086037 kune protein_coding CTCF-S2-jox2017_R1_peak_1612 chrUextra 19094530 19094810 + 25 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_838 chr3L 11344485 11344655 + 25 NA Intergenic Intergenic 13415 FBgn0036155 FBgn0036155 FBtr0333387 CG6163 protein_coding CTCF-S2-jox2017_R1_peak_341 chr2R 2485597 2485746 + 25 NA intron (FBgn0086655, intron 1 of 6) protein_coding-intron (FBgn0086655, intron 1 of 6) 2812 FBgn0033076 FBgn0033076 FBtr0305958 CG15233 protein_coding CTCF-S2-jox2017_R1_peak_1655 chrUextra 26731160 26731404 + 25 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1704 chrUextra 28654683 28655118 + 25 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1607 chrUextra 17518141 17518381 + 25 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1679 chrUextra 28339726 28339966 + 25 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_149 chr2L 9795328 9795624 + 25 NA exon (FBgn0032151, exon 14 of 14) protein_coding-exon (FBgn0032151, exon 14 of 14) -2369 FBgn0032150 FBgn0032150 FBtr0331286 CG13123 protein_coding CTCF-S2-jox2017_R1_peak_1565 chrUextra 7299013 7299245 + 25 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1153 chr3R 6092920 6093078 + 25 NA intron (FBgn0262617, intron 1 of 13) protein_coding-intron (FBgn0262617, intron 1 of 11) 5165 FBgn0040078 FBgn0040078 FBtr0082226 pont protein_coding CTCF-S2-jox2017_R1_peak_70 chr2L 4989276 4989421 + 25 NA intron (FBgn0083962, intron 11 of 16) protein_coding-intron (FBgn0083962, intron 10 of 16) 7734 FBgn0083962 FBgn0083962 FBtr0329977 CG34126 protein_coding CTCF-S2-jox2017_R1_peak_1047 chr3LHet 1292021 1292359 + 25 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_71 chr2L 5001223 5001622 + 24 NA intron (FBgn0053113, intron 1 of 4) protein_coding-intron (FBgn0053113, intron 1 of 4) 3506 FBgn0053113 FBgn0053113 FBtr0301538 Rtnl1 protein_coding CTCF-S2-jox2017_R1_peak_1472 chr3RHet 2107757 2108154 + 24 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1897 chrX 9927767 9928171 + 24 NA exon (FBgn0263132, exon 9 of 14) protein_coding-exon (FBgn0263132, exon 9 of 14) 16275 FBgn0263132 FBgn0263132 FBtr0307374 Cht6 protein_coding CTCF-S2-jox2017_R1_peak_1752 chrUextra 28922252 28922397 + 24 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_465 chr2R 9931562 9931944 + 24 NA intron (FBgn0002643, intron 3 of 5) protein_coding-intron (FBgn0002643, intron 4 of 6) 12569 FBgn0002643 FBgn0002643 FBtr0087598 mam protein_coding CTCF-S2-jox2017_R1_peak_732 chr3L 5651485 5651776 + 24 NA promoter-TSS (FBgn0085447) protein_coding-promoter-TSS (FBgn0085447) 3717 FBgn0035627 FBgn0035627 FBtr0077125 Sse protein_coding CTCF-S2-jox2017_R1_peak_1533 chrU 5579064 5579236 + 24 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1625 chrUextra 22465900 22466147 + 24 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1226 chr3R 11895284 11895450 + 24 NA TTS (FBgn0026059) protein_coding-TTS (FBgn0026059) -2133 FBgn0038397 FBgn0038397 FBtr0083235 CG10185 protein_coding CTCF-S2-jox2017_R1_peak_446 chr2R 8731333 8731486 + 24 NA exon (FBgn0028963, exon 2 of 4) protein_coding-exon (FBgn0028963, exon 2 of 4) 1239 FBgn0028963 FBgn0028963 FBtr0087781 Or49b protein_coding CTCF-S2-jox2017_R1_peak_1329 chr3R 17619675 17619820 + 24 NA intron (FBgn0013759, intron 8 of 17) protein_coding-intron (FBgn0013759, intron 8 of 17) 4245 FBgn0262331 FBgn0262331 FBtr0304511 mir-999 pre_miRNA CTCF-S2-jox2017_R1_peak_1505 chrU 100027 100328 + 24 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1941 chrX 13412101 13412246 + 24 NA intron (FBgn0052635, intron 10 of 10) protein_coding-intron (FBgn0052635, intron 10 of 10) -2363 FBgn0030491 FBgn0030491 FBtr0273441 CG15753 protein_coding CTCF-S2-jox2017_R1_peak_1135 chr3R 5268418 5268568 + 24 NA intron (FBgn0261552, intron 1 of 4) protein_coding-intron (FBgn0261552, intron 1 of 4) 13775 FBgn0037696 FBgn0037696 FBtr0082044 CG9362 protein_coding CTCF-S2-jox2017_R1_peak_522 chr2R 13579923 13580143 + 24 NA intron (FBgn0034262, intron 2 of 4) protein_coding-intron (FBgn0034262, intron 2 of 4) 2823 FBgn0034262 FBgn0034262 FBtr0086889 swi2 protein_coding CTCF-S2-jox2017_R1_peak_942 chr3L 17982246 17982413 + 24 NA intron (FBgn0000568, intron 4 of 7) protein_coding-intron (FBgn0000568, intron 2 of 5) 13849 FBgn0086081 FBgn0086081 FBtr0114357 snoRNA:Me28S-A30 snoRNA CTCF-S2-jox2017_R1_peak_1425 chr3R 25386410 25386562 + 24 NA intron (FBgn0000492, intron 1 of 1) protein_coding-intron (FBgn0000492, intron 1 of 1) 4377 FBgn0000492 FBgn0000492 FBtr0085441 Dr protein_coding CTCF-S2-jox2017_R1_peak_1726 chrUextra 28804636 28804878 + 24 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1132 chr3R 4955267 4955412 + 24 NA intron (FBgn0003165, intron 1 of 6) protein_coding-intron (FBgn0003165, intron 8 of 12) 28333 FBgn0003165 FBgn0003165 FBtr0305197 pum protein_coding CTCF-S2-jox2017_R1_peak_423 chr2R 7469569 7469777 + 24 NA intron (FBgn0033636, intron 11 of 15) protein_coding-intron (FBgn0033636, intron 12 of 16) 6163 FBgn0082993 FBgn0082993 FBtr0113499 snoRNA:Psi28S-1936 snoRNA CTCF-S2-jox2017_R1_peak_1556 chrUextra 5513300 5513445 + 24 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1840 chrX 5244277 5244422 + 24 NA intron (FBgn0029761, intron 2 of 14) protein_coding-intron (FBgn0029761, intron 2 of 10) 10080 FBgn0029761 FBgn0029761 FBtr0301952 SK protein_coding CTCF-S2-jox2017_R1_peak_1056 chr3LHet 2484274 2484419 + 24 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_737 chr3L 5813944 5814159 + 24 NA intron (FBgn0003984, intron 1 of 5) protein_coding-intron (FBgn0003984, intron 1 of 5) -7858 FBgn0035640 FBgn0035640 FBtr0077113 mad2 protein_coding CTCF-S2-jox2017_R1_peak_636 chr2RHet 2789394 2789567 + 24 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1521 chrU 2204651 2204859 + 24 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1126 chr3R 4804952 4805261 + 24 NA Intergenic Intergenic -1478 FBgn0037646 FBgn0037646 FBtr0081958 CAHbeta protein_coding CTCF-S2-jox2017_R1_peak_1468 chr3RHet 1914349 1914495 + 24 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1285 chr3R 15396138 15396476 + 24 NA intron (FBgn0260003, intron 1 of 10) protein_coding-intron (FBgn0260003, intron 26 of 34) -15611 FBgn0065080 FBgn0065080 FBtr0091611 snoRNA:Me18S-A1374 snoRNA CTCF-S2-jox2017_R1_peak_2 chr2L 34153 34371 + 24 NA exon (FBgn0051973, exon 7 of 13) protein_coding-exon (FBgn0051973, exon 7 of 13) -9107 FBgn0031209 FBgn0031209 FBtr0113008 Ir21a protein_coding CTCF-S2-jox2017_R1_peak_931 chr3L 17146585 17146862 + 24 NA intron (FBgn0260943, intron 6 of 14) protein_coding-intron (FBgn0260943, intron 6 of 14) -13240 FBgn0263381 FBgn0263381 FBtr0309067 CR43433 ncRNA CTCF-S2-jox2017_R1_peak_1113 chr3R 3671265 3671410 + 24 NA exon (FBgn0085413, exon 6 of 12) protein_coding-exon (FBgn0085413, exon 6 of 12) 31254 FBgn0085413 FBgn0085413 FBtr0302036 CG34384 protein_coding CTCF-S2-jox2017_R1_peak_579 chr2R 17592323 17592511 + 24 NA promoter-TSS (FBgn0010228) protein_coding-promoter-TSS (FBgn0010228) -2004 FBgn0010228 FBgn0010228 FBtr0071674 HmgZ protein_coding CTCF-S2-jox2017_R1_peak_1701 chrUextra 28632193 28632686 + 24 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1339 chr3R 18726966 18727116 + 24 NA intron (FBgn0017590, intron 1 of 10) protein_coding-intron (FBgn0017590, intron 1 of 10) 2017 FBgn0017590 FBgn0017590 FBtr0084337 klg protein_coding CTCF-S2-jox2017_R1_peak_978 chr3L 20131572 20131828 + 24 NA TTS (FBgn0036942) protein_coding-TTS (FBgn0036942) 2007 FBgn0036942 FBgn0036942 FBtr0074864 CG7328 protein_coding CTCF-S2-jox2017_R1_peak_1706 chrUextra 28666947 28667184 + 24 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_2013 chrX 18501366 18501820 + 24 NA exon (FBgn0030940, exon 6 of 6) protein_coding-exon (FBgn0030940, exon 6 of 6) 10029 FBgn0030940 FBgn0030940 FBtr0074618 CG15040 protein_coding CTCF-S2-jox2017_R1_peak_1568 chrUextra 7454426 7454598 + 24 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_57 chr2L 4301496 4301678 + 24 NA intron (FBgn0010473, intron 4 of 12) protein_coding-intron (FBgn0010473, intron 4 of 6) 18439 FBgn0010473 FBgn0010473 FBtr0301864 tutl protein_coding CTCF-S2-jox2017_R1_peak_1818 chrX 3705403 3705812 + 24 NA promoter-TSS (FBgn0000542) protein_coding-promoter-TSS (FBgn0000542) 7389 FBgn0061173 FBgn0061173 FBtr0070602 fd3F protein_coding CTCF-S2-jox2017_R1_peak_885 chr3L 14358457 14358847 + 24 NA intron (FBgn0001085, intron 4 of 4) protein_coding-intron (FBgn0001085, intron 4 of 4) 4155 FBgn0036421 FBgn0036421 FBtr0113170 CG13481 protein_coding CTCF-S2-jox2017_R1_peak_89 chr2L 6455100 6455327 + 23 NA promoter-TSS (FBgn0031815) protein_coding-promoter-TSS (FBgn0031815) 721 FBgn0031814 FBgn0031814 FBtr0329951 retm protein_coding CTCF-S2-jox2017_R1_peak_484 chr2R 11002012 11002187 + 23 NA promoter-TSS (FBgn0015371) protein_coding-promoter-TSS (FBgn0015371) -663 FBgn0015371 FBgn0015371 FBtr0305216 chn protein_coding CTCF-S2-jox2017_R1_peak_691 chr3L 3596459 3596644 + 23 NA intron (FBgn0005640, intron 6 of 10) protein_coding-intron (FBgn0005640, intron 6 of 10) 2728 FBgn0053504 FBgn0053504 FBtr0100848 snRNA:U7 snRNA CTCF-S2-jox2017_R1_peak_124 chr2L 8246066 8246211 + 23 NA exon (FBgn0032010, exon 12 of 14) protein_coding-exon (FBgn0032010, exon 12 of 14) -2135 FBgn0262359 FBgn0262359 FBtr0304640 CG43057 protein_coding CTCF-S2-jox2017_R1_peak_881 chr3L 14205590 14205735 + 23 NA intron (FBgn0013718, intron 3 of 8) protein_coding-intron (FBgn0013718, intron 5 of 9) -5643 FBgn0036415 FBgn0036415 FBtr0075737 CG7768 protein_coding CTCF-S2-jox2017_R1_peak_1724 chrUextra 28796529 28796766 + 23 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_2057 chrXHet 68153 68349 + 23 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_666 chr3L 1488430 1488790 + 23 NA promoter-TSS (FBgn0086670) snoRNA-promoter-TSS (FBgn0086670) -129 FBgn0263839 FBgn0263839 FBtr0321280 CR43701 ncRNA CTCF-S2-jox2017_R1_peak_701 chr3L 3870242 3870387 + 23 NA Intergenic Intergenic 14487 FBgn0264518 FBgn0264518 FBtr0333143 CR43917 ncRNA CTCF-S2-jox2017_R1_peak_995 chr3L 20633205 20633359 + 23 NA exon (FBgn0037014, exon 3 of 3) protein_coding-exon (FBgn0037014, exon 3 of 3) 2983 FBgn0037014 FBgn0037014 FBtr0078243 CG13251 protein_coding CTCF-S2-jox2017_R1_peak_441 chr2R 8453997 8454202 + 23 NA exon (FBgn0033753, exon 1 of 7) protein_coding-exon (FBgn0033753, exon 1 of 7) 407 FBgn0033753 FBgn0033753 FBtr0087824 Cyp301a1 protein_coding CTCF-S2-jox2017_R1_peak_1860 chrX 6981115 6981260 + 23 NA intron (FBgn0264270, intron 3 of 7) protein_coding-intron (FBgn0264270, intron 3 of 7) -1363 FBgn0263563 FBgn0263563 FBtr0309707 mir-4956 pre_miRNA CTCF-S2-jox2017_R1_peak_1656 chrUextra 26842965 26843206 + 23 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_343 chr2R 2610847 2611114 + 23 NA intron (FBgn0010482, intron 19 of 25) protein_coding-intron (FBgn0010482, intron 20 of 25) -3942 FBgn0033097 FBgn0033097 FBtr0306802 CG9430 protein_coding CTCF-S2-jox2017_R1_peak_721 chr3L 4980567 4980712 + 23 NA exon (FBgn0035584, exon 1 of 1) protein_coding-exon (FBgn0035584, exon 1 of 1) 130 FBgn0035584 FBgn0035584 FBtr0073374 CG17030 protein_coding CTCF-S2-jox2017_R1_peak_1220 chr3R 11319441 11319600 + 23 NA promoter-TSS (FBgn0038345) protein_coding-promoter-TSS (FBgn0038345) -804 FBgn0038345 FBgn0038345 FBtr0083148 CG5213 protein_coding CTCF-S2-jox2017_R1_peak_230 chr2L 15422554 15422699 + 23 NA TTS (FBgn0001983) protein_coding-TTS (FBgn0001983) 2959 FBgn0001983 FBgn0001983 FBtr0080740 wor protein_coding CTCF-S2-jox2017_R1_peak_229 chr2L 15345001 15345146 + 23 NA Intergenic Intergenic 11209 FBgn0001981 FBgn0001981 FBtr0080734 esg protein_coding CTCF-S2-jox2017_R1_peak_1184 chr3R 8137484 8137888 + 23 NA exon (FBgn0038011, exon 1 of 1) protein_coding-exon (FBgn0038011, exon 1 of 1) 611 FBgn0038011 FBgn0038011 FBtr0082566 CG4066 protein_coding CTCF-S2-jox2017_R1_peak_1908 chrX 10716175 10716337 + 23 NA promoter-TSS (FBgn0262735) protein_coding-promoter-TSS (FBgn0262735) -8130 FBgn0262735 FBgn0262735 FBtr0073419 Imp protein_coding CTCF-S2-jox2017_R1_peak_1640 chrUextra 25390128 25390356 + 23 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1162 chr3R 6480909 6481054 + 23 NA Intergenic Intergenic -1187 FBgn0085333 FBgn0085333 FBtr0112500 CG34304 protein_coding CTCF-S2-jox2017_R1_peak_452 chr2R 9254395 9254777 + 23 NA Intergenic Intergenic 10633 FBgn0033830 FBgn0033830 FBtr0087720 CG10814 protein_coding CTCF-S2-jox2017_R1_peak_1474 chr3RHet 2339741 2340178 + 23 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1742 chrUextra 28886584 28886802 + 23 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1594 chrUextra 13534002 13534237 + 23 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1386 chr3R 21850123 21850268 + 23 NA promoter-TSS (FBgn0002629) protein_coding-promoter-TSS (FBgn0002629) 85 FBgn0002629 FBgn0002629 FBtr0084980 m4 protein_coding CTCF-S2-jox2017_R1_peak_1189 chr3R 8583095 8583240 + 23 NA intron (FBgn0038084, intron 1 of 5) protein_coding-intron (FBgn0038084, intron 1 of 5) -13765 FBgn0038083 FBgn0038083 FBtr0302379 CG5999 protein_coding CTCF-S2-jox2017_R1_peak_188 chr2L 12285620 12285773 + 23 NA intron (FBgn0000114, intron 4 of 8) protein_coding-intron (FBgn0000114, intron 5 of 11) -53152 FBgn0051862 FBgn0051862 FBtr0080350 CG31862 protein_coding CTCF-S2-jox2017_R1_peak_1142 chr3R 5654750 5654895 + 23 NA intron (FBgn0037766, intron 2 of 2) protein_coding-intron (FBgn0037766, intron 2 of 2) -4236 FBgn0262105 FBgn0262105 FBtr0304027 CR42858 ncRNA CTCF-S2-jox2017_R1_peak_573 chr2R 17142755 17142966 + 23 NA promoter-TSS (FBgn0085426) protein_coding-promoter-TSS (FBgn0085426) -459 FBgn0085426 FBgn0085426 FBtr0305983 Rgk3 protein_coding CTCF-S2-jox2017_R1_peak_1787 chrX 1899386 1899647 + 23 NA TTS (FBgn0264562) protein_coding-TTS (FBgn0264562) 3881 FBgn0023545 FBgn0023545 FBtr0070347 CG4406 protein_coding CTCF-S2-jox2017_R1_peak_1408 chr3R 23669639 23669784 + 23 NA intron (FBgn0085382, intron 2 of 11) protein_coding-intron (FBgn0085382, intron 2 of 11) -1100 FBgn0067407 FBgn0067407 FBtr0085225 Or98P pseudogene CTCF-S2-jox2017_R1_peak_417 chr2R 7133068 7133230 + 23 NA promoter-TSS (FBgn0050029) pseudogene-promoter-TSS (FBgn0050029) 200 FBgn0085254 FBgn0085254 FBtr0112418 CG34225 protein_coding CTCF-S2-jox2017_R1_peak_2040 chrX 20602641 20602895 + 23 NA Intergenic Intergenic 4219 FBgn0031129 FBgn0031129 FBtr0077293 CG1324 protein_coding CTCF-S2-jox2017_R1_peak_1633 chrUextra 24203403 24203640 + 23 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1264 chr3R 13708036 13708385 + 23 NA exon (FBgn0053547, exon 19 of 27) protein_coding-exon (FBgn0053547, exon 19 of 27) -23976 FBgn0038558 FBgn0038558 FBtr0308497 CG12347 protein_coding CTCF-S2-jox2017_R1_peak_1547 chrUextra 2771323 2771564 + 23 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_375 chr2R 4884488 4884633 + 23 NA exon (FBgn0085379, exon 4 of 9) protein_coding-exon (FBgn0085379, exon 4 of 9) 9532 FBgn0085379 FBgn0085379 FBtr0112560 CG34350 protein_coding CTCF-S2-jox2017_R1_peak_1650 chrUextra 26311054 26311296 + 22 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_990 chr3L 20463643 20463844 + 22 NA TTS (FBgn0052428) protein_coding-TTS (FBgn0052428) 2729 FBgn0052428 FBgn0052428 FBtr0078222 CG32428 protein_coding CTCF-S2-jox2017_R1_peak_593 chr2R 18741804 18741983 + 22 NA promoter-TSS (FBgn0010078) protein_coding-promoter-TSS (FBgn0010078) -5 FBgn0010078 FBgn0010078 FBtr0071897 RpL23 protein_coding CTCF-S2-jox2017_R1_peak_405 chr2R 6403860 6404049 + 22 NA intron (FBgn0005630, intron 5 of 6) protein_coding-intron (FBgn0005630, intron 5 of 5) 18629 FBgn0005630 FBgn0005630 FBtr0089362 lola protein_coding CTCF-S2-jox2017_R1_peak_1039 chr3LHet 285662 285807 + 22 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1600 chrUextra 15559801 15559946 + 22 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1257 chr3R 13492312 13492503 + 22 NA intron (FBgn0038532, intron 4 of 7) protein_coding-intron (FBgn0038532, intron 4 of 6) -1502 FBgn0051576 FBgn0051576 FBtr0083477 tRNA:CR31576 tRNA CTCF-S2-jox2017_R1_peak_1213 chr3R 11001075 11001330 + 22 NA TTS (FBgn0038294) protein_coding-TTS (FBgn0038294) 4790 FBgn0038294 FBgn0038294 FBtr0306642 Mf protein_coding CTCF-S2-jox2017_R1_peak_935 chr3L 17535320 17535492 + 22 NA exon (FBgn0259174, exon 10 of 20) protein_coding-exon (FBgn0259174, exon 10 of 20) 6821 FBgn0023197 FBgn0023197 FBtr0303101 Jon74E protein_coding CTCF-S2-jox2017_R1_peak_915 chr3L 16385528 16385680 + 22 NA promoter-TSS (FBgn0036626) protein_coding-promoter-TSS (FBgn0036626) -699 FBgn0036626 FBgn0036626 FBtr0075416 CG13036 protein_coding CTCF-S2-jox2017_R1_peak_1456 chr3RHet 824168 824358 + 22 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1347 chr3R 19298225 19298370 + 22 NA Intergenic Intergenic -9290 FBgn0051225 FBgn0051225 FBtr0290293 Ir94f protein_coding CTCF-S2-jox2017_R1_peak_1939 chrX 13392781 13393103 + 22 NA intron (FBgn0052635, intron 4 of 10) protein_coding-intron (FBgn0052635, intron 4 of 10) -21594 FBgn0030491 FBgn0030491 FBtr0273441 CG15753 protein_coding CTCF-S2-jox2017_R1_peak_992 chr3L 20499363 20499517 + 22 NA TTS (FBgn0037004) protein_coding-TTS (FBgn0037004) 308 FBgn0037005 FBgn0037005 FBtr0078208 CG5078 protein_coding CTCF-S2-jox2017_R1_peak_1983 chrX 16518596 16518833 + 22 NA TTS (FBgn0026181) protein_coding-TTS (FBgn0026181) -3095 FBgn0030763 FBgn0030763 FBtr0074288 CG9782 protein_coding CTCF-S2-jox2017_R1_peak_1144 chr3R 5782559 5782704 + 22 NA TTS (FBgn0263097) protein_coding-TTS (FBgn0263097) 29151 FBgn0037770 FBgn0037770 FBtr0082150 Art4 protein_coding CTCF-S2-jox2017_R1_peak_1040 chr3LHet 371327 371473 + 22 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_757 chr3L 6935787 6935932 + 22 NA promoter-TSS (FBgn0035719) protein_coding-promoter-TSS (FBgn0035719) -97 FBgn0035719 FBgn0035719 FBtr0113150 tow protein_coding CTCF-S2-jox2017_R1_peak_2055 chrX 22092926 22093119 + 22 NA Intergenic Intergenic -58477 FBgn0052499 FBgn0052499 FBtr0077362 Cda4 protein_coding CTCF-S2-jox2017_R1_peak_210 chr2L 13672373 13672687 + 22 NA TTS (FBgn0028527) protein_coding-TTS (FBgn0028527) 7005 FBgn0028527 FBgn0028527 FBtr0080527 CG18507 protein_coding CTCF-S2-jox2017_R1_peak_1338 chr3R 18687531 18687676 + 22 NA Intergenic Intergenic -10077 FBgn0264428 FBgn0264428 FBtr0332548 CR43846 ncRNA CTCF-S2-jox2017_R1_peak_1695 chrUextra 28586139 28586378 + 22 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_895 chr3L 14918830 14919069 + 22 NA promoter-TSS (FBgn0259099) protein_coding-promoter-TSS (FBgn0259099) 18482 FBgn0040809 FBgn0040809 FBtr0075674 CG13465 protein_coding CTCF-S2-jox2017_R1_peak_1599 chrUextra 14417501 14417733 + 22 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1603 chrUextra 16605476 16605716 + 22 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1928 chrX 12647821 12648290 + 22 NA Intergenic Intergenic 6595 FBgn0020513 FBgn0020513 FBtr0073705 ade5 protein_coding CTCF-S2-jox2017_R1_peak_410 chr2R 6683808 6683970 + 22 NA Intergenic Intergenic -2037 FBgn0053144 FBgn0053144 FBtr0088254 CG33144 protein_coding CTCF-S2-jox2017_R1_peak_1207 chr3R 10204841 10204986 + 22 NA Intergenic Intergenic 2508 FBgn0038225 FBgn0038225 FBtr0082940 soti protein_coding CTCF-S2-jox2017_R1_peak_64 chr2L 4546381 4546602 + 22 NA exon (FBgn0053196, exon 13 of 47) protein_coding-exon (FBgn0053196, exon 13 of 47) 31710 FBgn0031613 FBgn0031613 FBtr0077444 HP6 protein_coding CTCF-S2-jox2017_R1_peak_872 chr3L 13853147 13853352 + 22 NA TTS (FBgn0029167) protein_coding-TTS (FBgn0029167) 6756 FBgn0036381 FBgn0036381 FBtr0075801 CG8745 protein_coding CTCF-S2-jox2017_R1_peak_1931 chrX 12862701 12863220 + 22 NA exon (FBgn0052644, exon 2 of 3) protein_coding-exon (FBgn0052644, exon 2 of 3) 1018 FBgn0052644 FBgn0052644 FBtr0305599 Mur11Da protein_coding CTCF-S2-jox2017_R1_peak_330 chr2R 1504248 1504416 + 22 NA Intergenic Intergenic 8203 FBgn0039970 FBgn0039970 FBtr0307172 CG17508 protein_coding CTCF-S2-jox2017_R1_peak_1088 chr3R 2127238 2127400 + 22 NA promoter-TSS (FBgn0037424) protein_coding-promoter-TSS (FBgn0037424) -209 FBgn0037424 FBgn0037424 FBtr0078607 Osi15 protein_coding CTCF-S2-jox2017_R1_peak_284 chr2L 19475099 19475244 + 22 NA Intergenic Intergenic -3544 FBgn0264391 FBgn0264391 FBtr0332319 CR43839 ncRNA CTCF-S2-jox2017_R1_peak_1644 chrUextra 25753545 25753785 + 22 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1125 chr3R 4756598 4756821 + 22 NA exon (FBgn0262614, exon 1 of 14) protein_coding-exon (FBgn0262614, exon 1 of 14) -4144 FBgn0003015 FBgn0003015 FBtr0081956 osk protein_coding CTCF-S2-jox2017_R1_peak_1111 chr3R 3605601 3605795 + 22 NA Intergenic Intergenic 3425 FBgn0042104 FBgn0042104 FBtr0273255 CG18747 protein_coding CTCF-S2-jox2017_R1_peak_1447 chr3R 26869295 26869593 + 22 NA TTS (FBgn0053920) protein_coding-TTS (FBgn0053920) 1383 FBgn0053920 FBgn0053920 FBtr0091924 CG33920 protein_coding CTCF-S2-jox2017_R1_peak_15 chr2L 626838 627330 + 22 NA exon (FBgn0031273, exon 1 of 1) protein_coding-exon (FBgn0031273, exon 1 of 1) 1421 FBgn0031273 FBgn0031273 FBtr0077999 CG2839 protein_coding CTCF-S2-jox2017_R1_peak_1022 chr3L 23247657 23247802 + 22 NA intron (FBgn0037212, intron 5 of 11) protein_coding-intron (FBgn0037212, intron 5 of 11) 47960 FBgn0037212 FBgn0037212 FBtr0308331 nAcRalpha-80B protein_coding CTCF-S2-jox2017_R1_peak_1964 chrX 14996406 14996551 + 22 NA exon (FBgn0030613, exon 14 of 19) protein_coding-exon (FBgn0030613, exon 14 of 19) -6403 FBgn0030614 FBgn0030614 FBtr0074029 CG9072 protein_coding CTCF-S2-jox2017_R1_peak_1586 chrUextra 11781156 11781405 + 22 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1375 chr3R 21224555 21225104 + 22 NA exon (FBgn0051439, exon 2 of 2) protein_coding-exon (FBgn0051439, exon 2 of 2) 1538 FBgn0051439 FBgn0051439 FBtr0084845 Muc96D protein_coding CTCF-S2-jox2017_R1_peak_1761 chrUextra 28970530 28970764 + 22 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_542 chr2R 14977391 14977536 + 22 NA exon (FBgn0004168, exon 2 of 11) protein_coding-exon (FBgn0004168, exon 2 of 11) 6216 FBgn0050125 FBgn0050125 FBtr0086595 Ir56a protein_coding CTCF-S2-jox2017_R1_peak_789 chr3L 9170333 9170633 + 22 NA exon (FBgn0004244, exon 1 of 9) protein_coding-exon (FBgn0004244, exon 1 of 9) 4766 FBgn0004244 FBgn0004244 FBtr0309054 Rdl protein_coding CTCF-S2-jox2017_R1_peak_859 chr3L 12603492 12603723 + 21 NA exon (FBgn0015919, exon 1 of 5) protein_coding-exon (FBgn0015919, exon 1 of 5) 876 FBgn0015919 FBgn0015919 FBtr0075909 caup protein_coding CTCF-S2-jox2017_R1_peak_380 chr2R 5208523 5208840 + 21 NA exon (FBgn0033403, exon 3 of 4) protein_coding-exon (FBgn0033403, exon 3 of 4) -8074 FBgn0262220 FBgn0262220 FBtr0304278 mir-987 pre_miRNA CTCF-S2-jox2017_R1_peak_69 chr2L 4928470 4928615 + 21 NA promoter-TSS (FBgn0041150) protein_coding-promoter-TSS (FBgn0041150) 8040 FBgn0031649 FBgn0031649 FBtr0077394 hoe2 protein_coding CTCF-S2-jox2017_R1_peak_806 chr3L 10137982 10138127 + 21 NA Intergenic Intergenic 6772 FBgn0086076 FBgn0086076 FBtr0114352 snoRNA:MeU2-A31 snoRNA CTCF-S2-jox2017_R1_peak_1779 chrX 1409493 1409638 + 21 NA exon (FBgn0025394, exon 5 of 5) protein_coding-exon (FBgn0025394, exon 5 of 5) 2473 FBgn0025394 FBgn0025394 FBtr0070260 inc protein_coding CTCF-S2-jox2017_R1_peak_1744 chrUextra 28896779 28896998 + 21 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1369 chr3R 20521876 20522021 + 21 NA intron (FBgn0003429, intron 15 of 21) protein_coding-intron (FBgn0003429, intron 16 of 24) -18558 FBgn0039217 FBgn0039217 FBtr0084687 CG13627 protein_coding CTCF-S2-jox2017_R1_peak_1518 chrU 1373076 1373361 + 21 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1772 chrX 734255 734532 + 21 NA exon (FBgn0264449, exon 1 of 10) protein_coding-exon (FBgn0264449, exon 1 of 10) -4463 FBgn0029535 FBgn0029535 FBtr0070142 CG14635 protein_coding CTCF-S2-jox2017_R1_peak_761 chr3L 7184217 7184362 + 21 NA Intergenic Intergenic -1272 FBgn0263218 FBgn0263218 FBtr0299546 Dscam2 protein_coding CTCF-S2-jox2017_R1_peak_1760 chrUextra 28964397 28964630 + 21 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_802 chr3L 9922459 9922756 + 21 NA intron (FBgn0085385, intron 2 of 19) protein_coding-intron (FBgn0085385, intron 2 of 19) 21387 FBgn0085385 FBgn0085385 FBtr0331578 CG34356 protein_coding CTCF-S2-jox2017_R1_peak_633 chr2RHet 538877 539242 + 21 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1512 chrU 626666 626947 + 21 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1301 chr3R 16166568 16166913 + 21 NA intron (FBgn0038789, intron 3 of 7) protein_coding-intron (FBgn0038789, intron 3 of 7) 1751 FBgn0038789 FBgn0038789 FBtr0113253 Ir92a protein_coding CTCF-S2-jox2017_R1_peak_1727 chrUextra 28807674 28807909 + 21 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_457 chr2R 9623723 9623873 + 21 NA intron (FBgn0000633, intron 11 of 12) protein_coding-intron (FBgn0000633, intron 11 of 12) -19051 FBgn0033866 FBgn0033866 FBtr0087628 CG6280 protein_coding CTCF-S2-jox2017_R1_peak_173 chr2L 11624191 11624415 + 21 NA exon (FBgn0015400, exon 2 of 2) protein_coding-exon (FBgn0015400, exon 2 of 2) -12531 FBgn0032368 FBgn0032368 FBtr0080268 spag4 protein_coding CTCF-S2-jox2017_R1_peak_172 chr2L 11604326 11604642 + 21 NA Intergenic Intergenic -2030 FBgn0015400 FBgn0015400 FBtr0080252 kek2 protein_coding CTCF-S2-jox2017_R1_peak_854 chr3L 12127150 12127458 + 21 NA TTS (FBgn0046296) protein_coding-TTS (FBgn0046296) 2058 FBgn0046296 FBgn0046296 FBtr0075995 CG11534 protein_coding CTCF-S2-jox2017_R1_peak_1080 chr3R 1161866 1162250 + 21 NA promoter-TSS (FBgn0013576) protein_coding-promoter-TSS (FBgn0013576) 18411 FBgn0037312 FBgn0037312 FBtr0078807 CG11999 protein_coding CTCF-S2-jox2017_R1_peak_1139 chr3R 5603721 5603908 + 21 NA promoter-TSS (FBgn0261599) protein_coding-promoter-TSS (FBgn0261599) 47 FBgn0261599 FBgn0261599 FBtr0082136 RpS29 protein_coding CTCF-S2-jox2017_R1_peak_1670 chrUextra 28061035 28061479 + 21 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1072 chr3R 704168 704451 + 21 NA promoter-TSS (FBgn0020280) protein_coding-promoter-TSS (FBgn0020280) -54 FBgn0020280 FBgn0020280 FBtr0078852 laf protein_coding CTCF-S2-jox2017_R1_peak_1757 chrUextra 28939113 28939355 + 21 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_707 chr3L 4252236 4252390 + 21 NA promoter-TSS (FBgn0041171) protein_coding-promoter-TSS (FBgn0041171) -262 FBgn0041171 FBgn0041171 FBtr0073247 ago protein_coding CTCF-S2-jox2017_R1_peak_621 chr2RHet 1 301 + 21 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_178 chr2L 11890740 11890896 + 21 NA intron (FBgn0259225, intron 3 of 9) protein_coding-intron (FBgn0259225, intron 3 of 9) 37388 FBgn0261805 FBgn0261805 FBtr0303281 CG42751 protein_coding CTCF-S2-jox2017_R1_peak_342 chr2R 2605771 2605916 + 21 NA promoter-TSS (FBgn0033096) protein_coding-promoter-TSS (FBgn0033096) -531 FBgn0033096 FBgn0033096 FBtr0086139 ZIP1 protein_coding CTCF-S2-jox2017_R1_peak_1780 chrX 1449785 1450526 + 21 NA exon (FBgn0025390, exon 6 of 8) protein_coding-exon (FBgn0025390, exon 6 of 8) 2278 FBgn0065095 FBgn0065095 FBtr0091687 snmRNA:400 ncRNA CTCF-S2-jox2017_R1_peak_640 chr2RHet 3013222 3013367 + 21 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_316 chr2L 22945526 22945808 + 21 NA Intergenic Intergenic 15248 FBgn0086683 FBgn0086683 FBtr0111241 Spf45 protein_coding CTCF-S2-jox2017_R1_peak_1736 chrUextra 28850550 28850790 + 20 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1009 chr3L 21688091 21688236 + 20 NA intron (FBgn0052447, intron 1 of 2) protein_coding-intron (FBgn0052447, intron 1 of 2) 11063 FBgn0264709 FBgn0264709 FBtr0333968 CR43978 ncRNA CTCF-S2-jox2017_R1_peak_612 chr2R 20358086 20358255 + 20 NA intron (FBgn0035010, intron 1 of 8) protein_coding-intron (FBgn0035010, intron 1 of 8) -2065 FBgn0035007 FBgn0035007 FBtr0072294 CG3492 protein_coding CTCF-S2-jox2017_R1_peak_200 chr2L 12852149 12852313 + 20 NA Intergenic Intergenic -29444 FBgn0015399 FBgn0015399 FBtr0332210 kek1 protein_coding CTCF-S2-jox2017_R1_peak_42 chr2L 3356417 3356579 + 20 NA Intergenic Intergenic -1148 FBgn0031526 FBgn0031526 FBtr0077588 CG8838 protein_coding CTCF-S2-jox2017_R1_peak_235 chr2L 15632789 15632964 + 20 NA TTS (FBgn0028518) protein_coding-TTS (FBgn0028518) 2792 FBgn0028518 FBgn0028518 FBtr0080755 CG18480 protein_coding CTCF-S2-jox2017_R1_peak_481 chr2R 10626443 10626644 + 20 NA TTS (FBgn0033958) protein_coding-TTS (FBgn0033958) 204 FBgn0263376 FBgn0263376 FBtr0309057 CR43428 ncRNA CTCF-S2-jox2017_R1_peak_404 chr2R 6380318 6380499 + 20 NA intron (FBgn0005630, intron 5 of 5) protein_coding-intron (FBgn0005630, intron 5 of 5) 12743 FBgn0033529 FBgn0033529 FBtr0088274 CG17765 protein_coding CTCF-S2-jox2017_R1_peak_1833 chrX 5047067 5047364 + 20 NA intron (FBgn0086911, intron 2 of 28) protein_coding-intron (FBgn0086911, intron 2 of 29) -12149 FBgn0029746 FBgn0029746 FBtr0070742 CG15465 protein_coding CTCF-S2-jox2017_R1_peak_1614 chrUextra 19158250 19158484 + 20 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1549 chrUextra 3022872 3023100 + 20 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1482 chr4 167993 168229 + 20 NA Intergenic Intergenic -3279 FBgn0052006 FBgn0052006 FBtr0089170 CG32006 protein_coding CTCF-S2-jox2017_R1_peak_2024 chrX 19181992 19182137 + 20 NA intron (FBgn0031011, intron 1 of 3) protein_coding-intron (FBgn0031011, intron 1 of 3) -3230 FBgn0031011 FBgn0031011 FBtr0301226 CG8034 protein_coding CTCF-S2-jox2017_R1_peak_1059 chr3R 58059 58204 + 20 NA promoter-TSS (FBgn0015331) protein_coding-promoter-TSS (FBgn0015331) -77 FBgn0037220 FBgn0037220 FBtr0078985 CG14641 protein_coding CTCF-S2-jox2017_R1_peak_590 chr2R 18404777 18405151 + 20 NA intron (FBgn0003175, intron 12 of 14) protein_coding-intron (FBgn0003175, intron 12 of 13) 25262 FBgn0034735 FBgn0034735 FBtr0071834 CG4610 protein_coding CTCF-S2-jox2017_R1_peak_643 chr2RHet 3064202 3064871 + 20 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_582 chr2R 17776217 17776412 + 20 NA intron (FBgn0085397, intron 1 of 6) protein_coding-intron (FBgn0085397, intron 1 of 4) 5497 FBgn0085397 FBgn0085397 FBtr0330338 Fili protein_coding CTCF-S2-jox2017_R1_peak_309 chr2L 21828137 21828494 + 20 NA promoter-TSS (FBgn0003866) protein_coding-promoter-TSS (FBgn0003866) -278 FBgn0003866 FBgn0003866 FBtr0085906 tsh protein_coding CTCF-S2-jox2017_R1_peak_584 chr2R 17939819 17940001 + 20 NA Intergenic Intergenic 5276 FBgn0034683 FBgn0034683 FBtr0071805 CG13500 protein_coding CTCF-S2-jox2017_R1_peak_1668 chrUextra 27809226 27809458 + 20 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_892 chr3L 14843897 14844153 + 20 NA intron (FBgn0036454, intron 3 of 7) protein_coding-intron (FBgn0036454, intron 3 of 18) 43491 FBgn0085274 FBgn0085274 FBtr0302580 CG34245 protein_coding CTCF-S2-jox2017_R1_peak_1523 chrU 2309661 2310063 + 20 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1236 chr3R 12455134 12455396 + 20 NA intron (FBgn0262742, intron 2 of 13) protein_coding-intron (FBgn0262742, intron 2 of 12) 4305 FBgn0262742 FBgn0262742 FBtr0083333 Fas1 protein_coding CTCF-S2-jox2017_R1_peak_448 chr2R 8943288 8943691 + 20 NA TTS (FBgn0033791) protein_coding-TTS (FBgn0033791) -6366 FBgn0033789 FBgn0033789 FBtr0087796 CG13324 protein_coding CTCF-S2-jox2017_R1_peak_413 chr2R 6960411 6960556 + 20 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -12608 FBgn0262817 FBgn0262817 FBtr0306049 CG43188 protein_coding CTCF-S2-jox2017_R1_peak_979 chr3L 20146122 20146267 + 20 NA intron (FBgn0261556, intron 14 of 15) protein_coding-intron (FBgn0261556, intron 14 of 14) -12487 FBgn0036942 FBgn0036942 FBtr0074864 CG7328 protein_coding CTCF-S2-jox2017_R1_peak_768 chr3L 7696629 7696774 + 20 NA intron (FBgn0261788, intron 10 of 18) protein_coding-intron (FBgn0052373, intron 1 of 7) 10046 FBgn0261788 FBgn0261788 FBtr0334062 Ank2 protein_coding CTCF-S2-jox2017_R1_peak_2033 chrX 20219308 20219841 + 20 NA Intergenic Intergenic 21053 FBgn0031101 FBgn0031101 FBtr0077297 CG1631 protein_coding CTCF-S2-jox2017_R1_peak_1071 chr3R 700275 700447 + 20 NA Intergenic Intergenic 3894 FBgn0020280 FBgn0020280 FBtr0078852 laf protein_coding CTCF-S2-jox2017_R1_peak_1991 chrX 17375936 17376255 + 20 NA intron (FBgn0263706, intron 4 of 8) protein_coding-intron (FBgn0263706, intron 4 of 8) 7253 FBgn0263706 FBgn0263706 FBtr0330597 CG43658 protein_coding CTCF-S2-jox2017_R1_peak_1058 chr3R 46624 46964 + 20 NA promoter-TSS (FBgn0037218) protein_coding-promoter-TSS (FBgn0037218) 75 FBgn0037218 FBgn0037218 FBtr0078966 aux protein_coding CTCF-S2-jox2017_R1_peak_807 chr3L 10148255 10148400 + 20 NA intron (FBgn0052057, intron 3 of 6) protein_coding-intron (FBgn0052057, intron 3 of 7) 3400 FBgn0036070 FBgn0036070 FBtr0076295 CG8072 protein_coding CTCF-S2-jox2017_R1_peak_8 chr2L 403703 403907 + 20 NA promoter-TSS (FBgn0003278) protein_coding-promoter-TSS (FBgn0003278) -500 FBgn0003278 FBgn0003278 FBtr0078054 RpI135 protein_coding CTCF-S2-jox2017_R1_peak_1145 chr3R 5815226 5815377 + 20 NA TTS (FBgn0263097) protein_coding-TTS (FBgn0263097) -3519 FBgn0037770 FBgn0037770 FBtr0082150 Art4 protein_coding CTCF-S2-jox2017_R1_peak_1838 chrX 5145622 5145804 + 20 NA TTS (FBgn0086911) protein_coding-TTS (FBgn0086911) -44414 FBgn0261803 FBgn0261803 FBtr0303279 CG42749 protein_coding CTCF-S2-jox2017_R1_peak_716 chr3L 4761659 4761804 + 19 NA intron (FBgn0035574, intron 5 of 10) protein_coding-intron (FBgn0035574, intron 5 of 10) 3848 FBgn0035572 FBgn0035572 FBtr0073347 CG13711 protein_coding CTCF-S2-jox2017_R1_peak_1155 chr3R 6182970 6183236 + 19 NA intron (FBgn0015396, intron 1 of 2) protein_coding-intron (FBgn0015396, intron 1 of 2) 7197 FBgn0015396 FBgn0015396 FBtr0082237 jumu protein_coding CTCF-S2-jox2017_R1_peak_1543 chrUextra 342480 342625 + 19 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1823 chrX 4138461 4139281 + 19 NA exon (FBgn0052774, exon 2 of 2) protein_coding-exon (FBgn0052774, exon 2 of 2) 953 FBgn0052774 FBgn0052774 FBtr0307050 Muc4B protein_coding CTCF-S2-jox2017_R1_peak_1230 chr3R 12119473 12119618 + 19 NA intron (FBgn0250823, intron 4 of 11) protein_coding-intron (FBgn0250823, intron 4 of 11) -11940 FBgn0038412 FBgn0038412 FBtr0083266 Zip3 protein_coding CTCF-S2-jox2017_R1_peak_1034 chr3L 24486788 24486933 + 19 NA Intergenic Intergenic -40329 FBgn0040045 FBgn0040045 FBtr0307117 CR12460 pseudogene CTCF-S2-jox2017_R1_peak_1358 chr3R 20057421 20057584 + 19 NA exon (FBgn0043884, exon 2 of 17) protein_coding-exon (FBgn0043884, exon 2 of 17) 1218 FBgn0043884 FBgn0043884 FBtr0084563 mask protein_coding CTCF-S2-jox2017_R1_peak_880 chr3L 14204891 14205234 + 19 NA intron (FBgn0013718, intron 2 of 8) protein_coding-intron (FBgn0013718, intron 4 of 9) -6243 FBgn0036415 FBgn0036415 FBtr0075737 CG7768 protein_coding CTCF-S2-jox2017_R1_peak_1923 chrX 12371920 12372283 + 19 NA TTS (FBgn0259143) protein_coding-TTS (FBgn0259143) 6400 FBgn0259143 FBgn0259143 FBtr0299559 CG42258 protein_coding CTCF-S2-jox2017_R1_peak_622 chr2RHet 15382 15641 + 19 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1866 chrX 7341176 7341321 + 19 NA Intergenic Intergenic -3473 FBgn0262828 FBgn0262828 FBtr0306066 CG43199 protein_coding CTCF-S2-jox2017_R1_peak_364 chr2R 4260714 4260877 + 19 NA intron (FBgn0261588, intron 2 of 10) protein_coding-intron (FBgn0261588, intron 2 of 10) 2217 FBgn0033287 FBgn0033287 FBtr0088740 CG8701 protein_coding CTCF-S2-jox2017_R1_peak_1913 chrX 11580318 11580866 + 19 NA intron (FBgn0014133, intron 3 of 6) protein_coding-intron (FBgn0014133, intron 3 of 5) 7564 FBgn0014133 FBgn0014133 FBtr0073526 bif protein_coding CTCF-S2-jox2017_R1_peak_1186 chr3R 8258900 8259128 + 19 NA promoter-TSS (FBgn0038049) protein_coding-promoter-TSS (FBgn0038049) 612 FBgn0029512 FBgn0029512 FBtr0082593 Aos1 protein_coding CTCF-S2-jox2017_R1_peak_949 chr3L 18154380 18154590 + 19 NA intron (FBgn0036781, intron 1 of 5) protein_coding-intron (FBgn0036781, intron 1 of 5) 1137 FBgn0036781 FBgn0036781 FBtr0075134 CG13699 protein_coding CTCF-S2-jox2017_R1_peak_1647 chrUextra 26138374 26138519 + 19 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1637 chrUextra 24444585 24444827 + 19 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1807 chrX 3292942 3293219 + 19 NA intron (FBgn0029657, intron 3 of 4) protein_coding-intron (FBgn0029657, intron 2 of 3) 25888 FBgn0262656 FBgn0262656 FBtr0070525 dm protein_coding CTCF-S2-jox2017_R1_peak_1669 chrUextra 27955457 27955690 + 19 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_952 chr3L 18227993 18228219 + 19 NA Intergenic Intergenic -17082 FBgn0036783 FBgn0036783 FBtr0075129 CheA75a protein_coding CTCF-S2-jox2017_R1_peak_1786 chrX 1888381 1888526 + 19 NA exon (FBgn0264562, exon 2 of 7) protein_coding-exon (FBgn0264562, exon 2 of 7) 14944 FBgn0023545 FBgn0023545 FBtr0070347 CG4406 protein_coding CTCF-S2-jox2017_R1_peak_840 chr3L 11485802 11486054 + 19 NA intron (FBgn0036165, intron 1 of 3) protein_coding-intron (FBgn0036165, intron 1 of 3) 5278 FBgn0036165 FBgn0036165 FBtr0076093 chrb protein_coding CTCF-S2-jox2017_R1_peak_1190 chr3R 8767963 8768116 + 19 NA Intergenic Intergenic -19435 FBgn0087021 FBgn0087021 FBtr0082690 Spc25 protein_coding CTCF-S2-jox2017_R1_peak_1739 chrUextra 28863881 28864119 + 19 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_857 chr3L 12514439 12514904 + 19 NA TTS (FBgn0041775) protein_coding-TTS (FBgn0041775) 2443 FBgn0020388 FBgn0020388 FBtr0075969 Pcaf protein_coding CTCF-S2-jox2017_R1_peak_662 chr3L 1064725 1064997 + 19 NA intron (FBgn0004870, intron 1 of 3) protein_coding-intron (FBgn0004870, intron 1 of 3) 29676 FBgn0035181 FBgn0035181 FBtr0072622 CG9205 protein_coding CTCF-S2-jox2017_R1_peak_1001 chr3L 21038957 21039215 + 19 NA intron (FBgn0026179, intron 1 of 5) protein_coding-intron (FBgn0026179, intron 1 of 5) -2240 FBgn0026179 FBgn0026179 FBtr0111038 siz protein_coding CTCF-S2-jox2017_R1_peak_984 chr3L 20229239 20229466 + 19 NA exon (FBgn0036958, exon 3 of 3) protein_coding-exon (FBgn0036958, exon 3 of 3) 4583 FBgn0036956 FBgn0036956 FBtr0074827 CG13813 protein_coding CTCF-S2-jox2017_R1_peak_1176 chr3R 7227379 7227550 + 19 NA exon (FBgn0004595, exon 8 of 8) protein_coding-exon (FBgn0004595, exon 8 of 8) -6155 FBgn0037892 FBgn0037892 FBtr0082384 mRpL40 protein_coding CTCF-S2-jox2017_R1_peak_1455 chr3RHet 816976 817206 + 19 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1936 chrX 13277232 13277493 + 19 NA exon (FBgn0030479, exon 2 of 2) protein_coding-exon (FBgn0030479, exon 2 of 2) 1544 FBgn0030479 FBgn0030479 FBtr0304001 Rbp1-like protein_coding CTCF-S2-jox2017_R1_peak_790 chr3L 9174471 9174624 + 19 NA intron (FBgn0004244, intron 1 of 9) protein_coding-intron (FBgn0004244, intron 1 of 9) 702 FBgn0004244 FBgn0004244 FBtr0309054 Rdl protein_coding CTCF-S2-jox2017_R1_peak_1662 chrUextra 27320195 27320429 + 19 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_335 chr2R 2029047 2029192 + 19 NA promoter-TSS (FBgn0011958) tRNA-promoter-TSS (FBgn0011958) -551 FBgn0011958 FBgn0011958 FBtr0085979 tRNA:R2:42Ad tRNA CTCF-S2-jox2017_R1_peak_1691 chrUextra 28561353 28561722 + 19 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_2025 chrX 19219875 19220051 + 19 NA Intergenic Intergenic -3865 FBgn0259834 FBgn0259834 FBtr0074682 out protein_coding CTCF-S2-jox2017_R1_peak_1475 chr3RHet 2485219 2485444 + 19 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_862 chr3L 12885683 12885828 + 19 NA promoter-TSS (FBgn0036323) protein_coding-promoter-TSS (FBgn0036323) -3 FBgn0036323 FBgn0036323 FBtr0075870 CG14118 protein_coding CTCF-S2-jox2017_R1_peak_322 chr2R 318823 319048 + 19 NA intron (FBgn0260798, intron 6 of 15) protein_coding-intron (FBgn0260798, intron 5 of 14) 39623 FBgn0260798 FBgn0260798 FBtr0302242 Gprk1 protein_coding CTCF-S2-jox2017_R1_peak_1024 chr3L 23657237 23657443 + 19 NA intron (FBgn0250816, intron 7 of 7) protein_coding-intron (FBgn0250816, intron 7 of 7) -51051 FBgn0039977 FBgn0039977 FBtr0333911 CG17454 protein_coding CTCF-S2-jox2017_R1_peak_1534 chrU 6290968 6291137 + 19 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_844 chr3L 11728986 11729133 + 19 NA exon (FBgn0036202, exon 8 of 8) protein_coding-exon (FBgn0036202, exon 8 of 8) 3815 FBgn0052087 FBgn0052087 FBtr0076117 CG32087 protein_coding CTCF-S2-jox2017_R1_peak_1960 chrX 14894802 14894986 + 19 NA intron (FBgn0000535, intron 16 of 16) protein_coding-intron (FBgn0000535, intron 16 of 16) -23573 FBgn0052594 FBgn0052594 FBtr0310270 be protein_coding CTCF-S2-jox2017_R1_peak_1053 chr3LHet 2146416 2146736 + 19 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1725 chrUextra 28803852 28804079 + 19 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_604 chr2R 19505544 19505689 + 19 NA Intergenic Intergenic -8990 FBgn0034885 FBgn0034885 FBtr0306384 CG4019 protein_coding CTCF-S2-jox2017_R1_peak_1674 chrUextra 28213726 28213975 + 19 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_2047 chrX 21072765 21073115 + 19 NA TTS (FBgn0031164) protein_coding-TTS (FBgn0031164) 1428 FBgn0031164 FBgn0031164 FBtr0077257 CG1724 protein_coding CTCF-S2-jox2017_R1_peak_63 chr2L 4531778 4531923 + 19 NA exon (FBgn0053196, exon 19 of 47) protein_coding-exon (FBgn0053196, exon 19 of 47) 46351 FBgn0031613 FBgn0031613 FBtr0077444 HP6 protein_coding CTCF-S2-jox2017_R1_peak_2031 chrX 19917989 19918307 + 19 NA promoter-TSS (FBgn0052826) tRNA-promoter-TSS (FBgn0052826) -984 FBgn0052826 FBgn0052826 FBtr0070001 tRNA:CR32826 tRNA CTCF-S2-jox2017_R1_peak_1 chr2L 30199 30503 + 19 NA intron (FBgn0051973, intron 5 of 10) protein_coding-intron (FBgn0051973, intron 7 of 12) -5196 FBgn0031209 FBgn0031209 FBtr0113008 Ir21a protein_coding CTCF-S2-jox2017_R1_peak_668 chr3L 2003333 2003566 + 19 NA exon (FBgn0262030, exon 2 of 2) protein_coding-exon (FBgn0262030, exon 2 of 2) 2202 FBgn0262030 FBgn0262030 FBtr0303925 CG42841 protein_coding CTCF-S2-jox2017_R1_peak_693 chr3L 3660864 3661009 + 18 NA Intergenic Intergenic 1860 FBgn0262544 FBgn0262544 FBtr0304986 CG43098 protein_coding CTCF-S2-jox2017_R1_peak_1850 chrX 5999812 6000191 + 18 NA TTS (FBgn0264386) protein_coding-TTS (FBgn0264386) 12099 FBgn0029843 FBgn0029843 FBtr0070873 Nep1 protein_coding CTCF-S2-jox2017_R1_peak_38 chr2L 3159220 3159440 + 18 NA promoter-TSS (FBgn0260817) protein_coding-promoter-TSS (FBgn0260817) -620 FBgn0260817 FBgn0260817 FBtr0077574 gkt protein_coding CTCF-S2-jox2017_R1_peak_22 chr2L 1302568 1302713 + 18 NA Intergenic Intergenic -26521 FBgn0011294 FBgn0011294 FBtr0077922 a5 protein_coding CTCF-S2-jox2017_R1_peak_260 chr2L 18116994 18117165 + 18 NA Intergenic Intergenic 2532 FBgn0032665 FBgn0032665 FBtr0081034 CG15152 protein_coding CTCF-S2-jox2017_R1_peak_272 chr2L 18935181 18935415 + 18 NA intron (FBgn0032723, intron 6 of 10) protein_coding-intron (FBgn0032723, intron 6 of 10) 8650 FBgn0032723 FBgn0032723 FBtr0081193 ssp3 protein_coding CTCF-S2-jox2017_R1_peak_1965 chrX 15088426 15088685 + 18 NA Intergenic Intergenic 12114 FBgn0052588 FBgn0052588 FBtr0074025 CG32588 protein_coding CTCF-S2-jox2017_R1_peak_1510 chrU 624233 624459 + 18 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_155 chr2L 9898090 9898522 + 18 NA promoter-TSS (FBgn0004867) protein_coding-promoter-TSS (FBgn0004867) -1038 FBgn0004867 FBgn0004867 FBtr0330682 RpS2 protein_coding CTCF-S2-jox2017_R1_peak_1756 chrUextra 28931959 28932202 + 18 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1975 chrX 15707399 15707544 + 18 NA promoter-TSS (FBgn0003345) protein_coding-promoter-TSS (FBgn0003345) 1109 FBgn0003345 FBgn0003345 FBtr0074101 sd protein_coding CTCF-S2-jox2017_R1_peak_204 chr2L 13090078 13090250 + 18 NA Intergenic Intergenic -16707 FBgn0032470 FBgn0032470 FBtr0301366 CG5142 protein_coding CTCF-S2-jox2017_R1_peak_306 chr2L 21608871 21609148 + 18 NA Intergenic Intergenic 9765 FBgn0032955 FBgn0032955 FBtr0100511 CG2201 protein_coding CTCF-S2-jox2017_R1_peak_520 chr2R 13495960 13496105 + 18 NA exon (FBgn0034253, exon 5 of 9) protein_coding-exon (FBgn0034253, exon 5 of 9) 3756 FBgn0050231 FBgn0050231 FBtr0086835 tRNA:CR30231 tRNA CTCF-S2-jox2017_R1_peak_1214 chr3R 11051075 11051220 + 18 NA promoter-TSS (FBgn0263979) protein_coding-promoter-TSS (FBgn0263979) -3 FBgn0051344 FBgn0051344 FBtr0083136 CG31344 protein_coding CTCF-S2-jox2017_R1_peak_427 chr2R 7522476 7522621 + 18 NA intron (FBgn0033638, intron 1 of 7) protein_coding-intron (FBgn0033638, intron 1 of 7) 5870 FBgn0033638 FBgn0033638 FBtr0088089 CG9005 protein_coding CTCF-S2-jox2017_R1_peak_137 chr2L 9546990 9547145 + 18 NA TTS (FBgn0032129) protein_coding-TTS (FBgn0032129) 1256 FBgn0032127 FBgn0032127 FBtr0273329 CG13114 protein_coding CTCF-S2-jox2017_R1_peak_329 chr2R 1485987 1486165 + 18 NA Intergenic Intergenic 6257 FBgn0039969 FBgn0039969 FBtr0273211 Fis1 protein_coding CTCF-S2-jox2017_R1_peak_1402 chr3R 23201372 23201517 + 18 NA exon (FBgn0016061, exon 17 of 17) protein_coding-exon (FBgn0016061, exon 17 of 17) -5857 FBgn0263453 FBgn0263453 FBtr0309308 CR43476 ncRNA CTCF-S2-jox2017_R1_peak_1017 chr3L 22831619 22831764 + 18 NA TTS (FBgn0037195) protein_coding-TTS (FBgn0037195) 1523 FBgn0037195 FBgn0037195 FBtr0078546 CG11226 protein_coding CTCF-S2-jox2017_R1_peak_628 chr2RHet 200096 200251 + 18 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1969 chrX 15384725 15384870 + 18 NA intron (FBgn0027287, intron 2 of 6) protein_coding-intron (FBgn0027287, intron 2 of 6) -8246 FBgn0027287 FBgn0027287 FBtr0074043 Gmap protein_coding CTCF-S2-jox2017_R1_peak_198 chr2L 12602986 12603155 + 18 NA intron (FBgn0085424, intron 2 of 5) protein_coding-intron (FBgn0085424, intron 2 of 5) -15278 FBgn0085424 FBgn0085424 FBtr0112643 nub protein_coding CTCF-S2-jox2017_R1_peak_1055 chr3LHet 2397546 2397804 + 18 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_21 chr2L 1183834 1183986 + 18 NA promoter-TSS (FBgn0031321) protein_coding-promoter-TSS (FBgn0031321) 111 FBgn0031320 FBgn0031320 FBtr0077978 CG5126 protein_coding CTCF-S2-jox2017_R1_peak_46 chr2L 3530420 3530565 + 18 NA promoter-TSS (FBgn0031550) protein_coding-promoter-TSS (FBgn0031550) -175 FBgn0031549 FBgn0031549 FBtr0301590 Spindly protein_coding CTCF-S2-jox2017_R1_peak_494 chr2R 11481572 11481746 + 18 NA Intergenic Intergenic -19948 FBgn0260429 FBgn0260429 FBtr0304712 CG42524 protein_coding CTCF-S2-jox2017_R1_peak_1158 chr3R 6288702 6288910 + 18 NA Intergenic Intergenic 28295 FBgn0037817 FBgn0037817 FBtr0301283 Cyp12e1 protein_coding CTCF-S2-jox2017_R1_peak_997 chr3L 20759460 20759605 + 18 NA Intergenic Intergenic 3050 FBgn0037017 FBgn0037017 FBtr0078280 CG4074 protein_coding CTCF-S2-jox2017_R1_peak_1544 chrUextra 439487 439739 + 18 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_784 chr3L 9005508 9005653 + 18 NA TTS (FBgn0035956) protein_coding-TTS (FBgn0035956) -2642 FBgn0035955 FBgn0035955 FBtr0333909 CG5194 protein_coding CTCF-S2-jox2017_R1_peak_455 chr2R 9485503 9485648 + 18 NA exon (FBgn0033860, exon 1 of 1) protein_coding-exon (FBgn0033860, exon 1 of 1) 1393 FBgn0033860 FBgn0033860 FBtr0087624 S-Lap5 protein_coding CTCF-S2-jox2017_R1_peak_1340 chr3R 18810932 18811160 + 18 NA intron (FBgn0263390, intron 7 of 10) protein_coding-intron (FBgn0263390, intron 6 of 9) -1957 FBgn0039033 FBgn0039033 FBtr0084341 Or94a protein_coding CTCF-S2-jox2017_R1_peak_1392 chr3R 22245446 22245815 + 18 NA Intergenic Intergenic 5185 FBgn0040606 FBgn0040606 FBtr0309031 CG6503 protein_coding CTCF-S2-jox2017_R1_peak_2044 chrX 20665927 20666214 + 18 NA intron (FBgn0085387, intron 5 of 11) protein_coding-intron (FBgn0085387, intron 2 of 8) -13823 FBgn0052507 FBgn0052507 FBtr0302987 CG32507 protein_coding CTCF-S2-jox2017_R1_peak_1709 chrUextra 28681171 28681316 + 18 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1191 chr3R 8806346 8806608 + 18 NA promoter-TSS (FBgn0038100) protein_coding-promoter-TSS (FBgn0038100) -291 FBgn0038100 FBgn0038100 FBtr0082693 Paip2 protein_coding CTCF-S2-jox2017_R1_peak_323 chr2R 464145 464382 + 18 NA Intergenic Intergenic -18535 FBgn0260799 FBgn0260799 FBtr0111114 p120ctn protein_coding CTCF-S2-jox2017_R1_peak_1735 chrUextra 28844579 28844821 + 18 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1577 chrUextra 9654583 9654807 + 18 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_103 chr2L 7255511 7255773 + 18 NA exon (FBgn0010453, exon 4 of 4) protein_coding-exon (FBgn0010453, exon 4 of 4) -1870 FBgn0051909 FBgn0051909 FBtr0300459 CG31909 protein_coding CTCF-S2-jox2017_R1_peak_1043 chr3LHet 1079019 1079301 + 18 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_98 chr2L 6885251 6885518 + 18 NA intron (FBgn0031866, intron 1 of 12) protein_coding-intron (FBgn0031866, intron 1 of 12) 10484 FBgn0031866 FBgn0031866 FBtr0079344 neuroligin protein_coding CTCF-S2-jox2017_R1_peak_243 chr2L 16769958 16770135 + 18 NA intron (FBgn0264695, intron 3 of 18) protein_coding-intron (FBgn0264695, intron 3 of 17) 2269 FBgn0264695 FBgn0264695 FBtr0307495 Mhc protein_coding CTCF-S2-jox2017_R1_peak_2029 chrX 19759937 19760082 + 18 NA promoter-TSS (FBgn0052529) protein_coding-promoter-TSS (FBgn0052529) -170 FBgn0052529 FBgn0052529 FBtr0306523 Hers protein_coding CTCF-S2-jox2017_R1_peak_1101 chr3R 2784486 2784631 + 18 NA intron (FBgn0260642, intron 2 of 6) protein_coding-intron (FBgn0260642, intron 2 of 6) -25996 FBgn0260642 FBgn0260642 FBtr0081646 Antp protein_coding CTCF-S2-jox2017_R1_peak_1596 chrUextra 13785447 13785666 + 17 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_521 chr2R 13553105 13553315 + 17 NA promoter-TSS (FBgn0034258) protein_coding-promoter-TSS (FBgn0034258) 27 FBgn0034258 FBgn0034258 FBtr0086836 eIF3-S8 protein_coding CTCF-S2-jox2017_R1_peak_1976 chrX 15985410 15985721 + 17 NA promoter-TSS (FBgn0028397) protein_coding-promoter-TSS (FBgn0028397) -4143 FBgn0028397 FBgn0028397 FBtr0310317 Tob protein_coding CTCF-S2-jox2017_R1_peak_317 chr2R 22829 23120 + 17 NA Intergenic Intergenic 4495 FBgn0262115 FBgn0262115 FBtr0111298 CG17683 protein_coding CTCF-S2-jox2017_R1_peak_199 chr2L 12611928 12612073 + 17 NA promoter-TSS (FBgn0032439) protein_coding-promoter-TSS (FBgn0032439) -6348 FBgn0085424 FBgn0085424 FBtr0112643 nub protein_coding CTCF-S2-jox2017_R1_peak_1925 chrX 12460455 12460725 + 17 NA exon (FBgn0264542, exon 2 of 11) protein_coding-exon (FBgn0264542, exon 2 of 11) 13433 FBgn0030398 FBgn0030398 FBtr0333157 Cpr11B protein_coding CTCF-S2-jox2017_R1_peak_325 chr2R 852254 852429 + 17 NA intron (FBgn0040849, intron 1 of 4) protein_coding-intron (FBgn0040849, intron 1 of 4) 15169 FBgn0040849 FBgn0040849 FBtr0299925 Ir41a protein_coding CTCF-S2-jox2017_R1_peak_665 chr3L 1405631 1405914 + 17 NA intron (FBgn0003138, intron 3 of 7) protein_coding-intron (FBgn0003138, intron 1 of 6) 3991 FBgn0011855 FBgn0011855 FBtr0072691 tRNA:E4:62Ae tRNA CTCF-S2-jox2017_R1_peak_180 chr2L 11931940 11932247 + 17 NA Intergenic Intergenic -2412 FBgn0026392 FBgn0026392 FBtr0080278 Or33a protein_coding CTCF-S2-jox2017_R1_peak_1545 chrUextra 1566955 1567191 + 17 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1322 chr3R 17160633 17160855 + 17 NA intron (FBgn0038881, intron 3 of 14) protein_coding-intron (FBgn0038881, intron 3 of 14) 14562 FBgn0038881 FBgn0038881 FBtr0084095 CG16791 protein_coding CTCF-S2-jox2017_R1_peak_1723 chrUextra 28795694 28795932 + 17 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_176 chr2L 11865516 11865873 + 17 NA intron (FBgn0259225, intron 1 of 8) protein_coding-intron (FBgn0259225, intron 3 of 9) 12264 FBgn0261805 FBgn0261805 FBtr0303281 CG42751 protein_coding CTCF-S2-jox2017_R1_peak_324 chr2R 467416 467618 + 17 NA Intergenic Intergenic -15281 FBgn0260799 FBgn0260799 FBtr0111114 p120ctn protein_coding CTCF-S2-jox2017_R1_peak_1019 chr3L 22936658 22936903 + 17 NA Intergenic Intergenic -2315 FBgn0037207 FBgn0037207 FBtr0078563 Mes2 protein_coding CTCF-S2-jox2017_R1_peak_618 chr2R 20951303 20951448 + 17 NA exon (FBgn0001148, exon 2 of 2) protein_coding-exon (FBgn0001148, exon 2 of 2) 1873 FBgn0001148 FBgn0001148 FBtr0072444 gsb protein_coding CTCF-S2-jox2017_R1_peak_1900 chrX 10151619 10151764 + 17 NA promoter-TSS (FBgn0263220) protein_coding-promoter-TSS (FBgn0263220) 1029 FBgn0264674 FBgn0264674 FBtr0333763 CR43959 ncRNA CTCF-S2-jox2017_R1_peak_706 chr3L 4239370 4239682 + 17 NA promoter-TSS (FBgn0035515) protein_coding-promoter-TSS (FBgn0035515) -782 FBgn0035515 FBgn0035515 FBtr0073226 CG14997 protein_coding CTCF-S2-jox2017_R1_peak_2005 chrX 18053179 18053401 + 17 NA intron (FBgn0030897, intron 1 of 7) protein_coding-intron (FBgn0030897, intron 1 of 7) 3889 FBgn0030897 FBgn0030897 FBtr0100239 Frq1 protein_coding CTCF-S2-jox2017_R1_peak_1915 chrX 11724997 11725166 + 17 NA exon (FBgn0262684, exon 8 of 8) protein_coding-exon (FBgn0262684, exon 8 of 8) -6585 FBgn0264509 FBgn0264509 FBtr0333014 CR43908 ncRNA CTCF-S2-jox2017_R1_peak_1309 chr3R 16737084 16737229 + 17 NA exon (FBgn0051191, exon 6 of 6) protein_coding-exon (FBgn0051191, exon 6 of 6) 1445 FBgn0263460 FBgn0263460 FBtr0309759 snoRNA:CG31191-a snoRNA CTCF-S2-jox2017_R1_peak_201 chr2L 12880490 12880839 + 17 NA Intergenic Intergenic -31866 FBgn0040508 FBgn0040508 FBtr0100494 ACXC protein_coding CTCF-S2-jox2017_R1_peak_1328 chr3R 17616284 17616537 + 17 NA intron (FBgn0013759, intron 11 of 17) protein_coding-intron (FBgn0013759, intron 11 of 17) 7582 FBgn0262331 FBgn0262331 FBtr0304511 mir-999 pre_miRNA CTCF-S2-jox2017_R1_peak_305 chr2L 21413899 21414068 + 17 NA Intergenic Intergenic -3095 FBgn0053801 FBgn0053801 FBtr0091805 His1:CG33801 protein_coding CTCF-S2-jox2017_R1_peak_1445 chr3R 26723571 26723716 + 17 NA exon (FBgn0015032, exon 4 of 8) protein_coding-exon (FBgn0015032, exon 4 of 8) 3960 FBgn0015032 FBgn0015032 FBtr0085712 Cyp4c3 protein_coding CTCF-S2-jox2017_R1_peak_828 chr3L 10913385 10913755 + 17 NA Intergenic Intergenic -21347 FBgn0036111 FBgn0036111 FBtr0076251 Aps protein_coding CTCF-S2-jox2017_R1_peak_82 chr2L 6114912 6115220 + 17 NA intron (FBgn0051641, intron 4 of 8) protein_coding-intron (FBgn0051641, intron 2 of 6) -3446 FBgn0051642 FBgn0051642 FBtr0079199 CG31642 protein_coding CTCF-S2-jox2017_R1_peak_585 chr2R 17948295 17948440 + 17 NA promoter-TSS (FBgn0034684) protein_coding-promoter-TSS (FBgn0034684) -152 FBgn0034684 FBgn0034684 FBtr0071804 CG13501 protein_coding CTCF-S2-jox2017_R1_peak_1919 chrX 12182087 12182357 + 17 NA intron (FBgn0259240, intron 7 of 16) protein_coding-intron (FBgn0259240, intron 5 of 14) -52312 FBgn0052655 FBgn0052655 FBtr0073633 CG32655 protein_coding CTCF-S2-jox2017_R1_peak_1232 chr3R 12187344 12187553 + 17 NA exon (FBgn0038422, exon 5 of 5) protein_coding-exon (FBgn0038422, exon 5 of 5) -1618 FBgn0259917 FBgn0259917 FBtr0300198 CG42446 protein_coding CTCF-S2-jox2017_R1_peak_1067 chr3R 623389 623574 + 17 NA intron (FBgn0260794, intron 2 of 10) protein_coding-intron (FBgn0260794, intron 2 of 10) -13037 FBgn0037276 FBgn0037276 FBtr0078880 CG17387 protein_coding CTCF-S2-jox2017_R1_peak_753 chr3L 6894554 6894778 + 17 NA Intergenic Intergenic 12398 FBgn0041194 FBgn0041194 FBtr0076946 Prat2 protein_coding CTCF-S2-jox2017_R1_peak_391 chr2R 5976620 5976765 + 17 NA intron (FBgn0033484, intron 1 of 6) protein_coding-intron (FBgn0033484, intron 1 of 5) -2124 FBgn0028560 FBgn0028560 FBtr0089674 sut4 protein_coding CTCF-S2-jox2017_R1_peak_486 chr2R 11039138 11039303 + 16 NA Intergenic Intergenic -3722 FBgn0013467 FBgn0013467 FBtr0087362 igl protein_coding CTCF-S2-jox2017_R1_peak_1128 chr3R 4826081 4826382 + 16 NA exon (FBgn0051100, exon 2 of 7) protein_coding-exon (FBgn0051100, exon 2 of 7) 1377 FBgn0051100 FBgn0051100 FBtr0082011 CG31100 protein_coding CTCF-S2-jox2017_R1_peak_1391 chr3R 22219953 22220098 + 16 NA Intergenic Intergenic 9353 FBgn0039424 FBgn0039424 FBtr0113295 CG14239 protein_coding CTCF-S2-jox2017_R1_peak_907 chr3L 15657087 15657254 + 16 NA Intergenic Intergenic 2203 FBgn0262528 FBgn0262528 FBtr0304968 CG43082 protein_coding CTCF-S2-jox2017_R1_peak_216 chr2L 14119641 14119887 + 16 NA Intergenic Intergenic -9025 FBgn0051769 FBgn0051769 FBtr0080602 CG31769 protein_coding CTCF-S2-jox2017_R1_peak_932 chr3L 17212005 17212198 + 16 NA intron (FBgn0260943, intron 3 of 14) protein_coding-intron (FBgn0260943, intron 3 of 14) 19211 FBgn0260943 FBgn0260943 FBtr0113427 Rbp6 protein_coding CTCF-S2-jox2017_R1_peak_1649 chrUextra 26185769 26186002 + 16 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1405 chr3R 23303190 23303598 + 16 NA Intergenic Intergenic -1005 FBgn0039519 FBgn0039519 FBtr0085183 Cyp6a18 protein_coding CTCF-S2-jox2017_R1_peak_368 chr2R 4464537 4464746 + 16 NA exon (FBgn0259226, exon 2 of 8) protein_coding-exon (FBgn0259226, exon 2 of 8) 1350 FBgn0259226 FBgn0259226 FBtr0299788 CG42326 protein_coding CTCF-S2-jox2017_R1_peak_1274 chr3R 14316027 14316172 + 16 NA intron (FBgn0004652, intron 2 of 8) protein_coding-intron (FBgn0004652, intron 2 of 7) 55209 FBgn0004652 FBgn0004652 FBtr0083647 fru protein_coding CTCF-S2-jox2017_R1_peak_55 chr2L 4196371 4196523 + 16 NA intron (FBgn0031589, intron 3 of 12) protein_coding-intron (FBgn0031589, intron 2 of 11) 930 FBgn0031589 FBgn0031589 FBtr0113020 CG3714 protein_coding CTCF-S2-jox2017_R1_peak_1063 chr3R 186417 186674 + 16 NA intron (FBgn0037238, intron 1 of 5) protein_coding-intron (FBgn0037238, intron 1 of 5) 940 FBgn0037238 FBgn0037238 FBtr0332450 CG1090 protein_coding CTCF-S2-jox2017_R1_peak_331 chr2R 1528483 1528628 + 16 NA TTS (FBgn0033028) protein_coding-TTS (FBgn0033028) 11733 FBgn0033028 FBgn0033028 FBtr0086072 CG11665 protein_coding CTCF-S2-jox2017_R1_peak_1464 chr3RHet 1400309 1400507 + 16 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_169 chr2L 11266919 11267143 + 16 NA exon (FBgn0040232, exon 5 of 12) protein_coding-exon (FBgn0040232, exon 5 of 12) 1971 FBgn0040232 FBgn0040232 FBtr0332205 cmet protein_coding CTCF-S2-jox2017_R1_peak_1889 chrX 9502878 9503130 + 16 NA promoter-TSS (FBgn0027084) protein_coding-promoter-TSS (FBgn0027084) -130 FBgn0027084 FBgn0027084 FBtr0303560 Aats-lys protein_coding CTCF-S2-jox2017_R1_peak_258 chr2L 18100906 18101051 + 16 NA Intergenic Intergenic 4410 FBgn0032664 FBgn0032664 FBtr0081033 CG5755 protein_coding CTCF-S2-jox2017_R1_peak_1363 chr3R 20329527 20329709 + 16 NA Intergenic Intergenic 11205 FBgn0004118 FBgn0004118 FBtr0084682 nAcRbeta-96A protein_coding CTCF-S2-jox2017_R1_peak_1414 chr3R 24372980 24373201 + 16 NA Intergenic Intergenic -2566 FBgn0039588 FBgn0039588 FBtr0085293 CG12413 protein_coding CTCF-S2-jox2017_R1_peak_1747 chrUextra 28905390 28905867 + 16 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_477 chr2R 10434192 10434700 + 16 NA promoter-TSS (FBgn0050076) protein_coding-promoter-TSS (FBgn0050076) -569 FBgn0050076 FBgn0050076 FBtr0087513 CG30076 protein_coding CTCF-S2-jox2017_R1_peak_68 chr2L 4873597 4873758 + 16 NA exon (FBgn0051660, exon 12 of 14) protein_coding-exon (FBgn0051660, exon 12 of 14) 9436 FBgn0000286 FBgn0000286 FBtr0089648 Cf2 protein_coding CTCF-S2-jox2017_R1_peak_120 chr2L 8052219 8052364 + 16 NA exon (FBgn0031981, exon 6 of 6) protein_coding-exon (FBgn0031981, exon 6 of 6) 8820 FBgn0031981 FBgn0031981 FBtr0079541 CG7466 protein_coding CTCF-S2-jox2017_R1_peak_1452 chr3R 27811163 27811575 + 16 NA exon (FBgn0011224, exon 1 of 14) protein_coding-exon (FBgn0011224, exon 1 of 14) -1202 FBgn0039886 FBgn0039886 FBtr0085871 CG2003 protein_coding CTCF-S2-jox2017_R1_peak_843 chr3L 11643324 11643589 + 16 NA TTS (FBgn0036188) protein_coding-TTS (FBgn0036188) 1600 FBgn0036188 FBgn0036188 FBtr0076107 CG7339 protein_coding CTCF-S2-jox2017_R1_peak_1115 chr3R 3711243 3711418 + 16 NA intron (FBgn0037525, intron 2 of 14) protein_coding-intron (FBgn0037525, intron 2 of 14) 1125 FBgn0037525 FBgn0037525 FBtr0300826 CG17816 protein_coding CTCF-S2-jox2017_R1_peak_289 chr2L 19987499 19987821 + 16 NA intron (FBgn0264443, intron 2 of 5) protein_coding-intron (FBgn0264443, intron 2 of 5) 8831 FBgn0263611 FBgn0263611 FBtr0309974 CR43620 ncRNA CTCF-S2-jox2017_R1_peak_922 chr3L 16713604 16713769 + 16 NA exon (FBgn0000414, exon 6 of 10) protein_coding-exon (FBgn0000414, exon 6 of 10) -4305 FBgn0036655 FBgn0036655 FBtr0075319 CG13031 protein_coding CTCF-S2-jox2017_R1_peak_2054 chrX 21946699 21946844 + 16 NA promoter-TSS (FBgn0031196) protein_coding-promoter-TSS (FBgn0031196) -663 FBgn0031196 FBgn0031196 FBtr0077363 CG17599 protein_coding CTCF-S2-jox2017_R1_peak_1759 chrUextra 28957142 28957381 + 16 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_642 chr2RHet 3062161 3062306 + 16 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1037 chr3LHet 188978 189203 + 16 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1711 chrUextra 28720954 28721173 + 16 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_218 chr2L 14165275 14165420 + 16 NA exon (FBgn0263038, exon 3 of 6) protein_coding-exon (FBgn0263038, exon 3 of 6) -2125 FBgn0263037 FBgn0263037 FBtr0306928 CG43332 protein_coding CTCF-S2-jox2017_R1_peak_1349 chr3R 19351804 19352021 + 16 NA intron (FBgn0039084, intron 1 of 6) protein_coding-intron (FBgn0039084, intron 2 of 7) 2794 FBgn0039084 FBgn0039084 FBtr0084423 CG10175 protein_coding CTCF-S2-jox2017_R1_peak_1218 chr3R 11318390 11318652 + 16 NA exon (FBgn0038344, exon 6 of 6) protein_coding-exon (FBgn0038344, exon 6 of 6) -1803 FBgn0038345 FBgn0038345 FBtr0083148 CG5213 protein_coding CTCF-S2-jox2017_R1_peak_690 chr3L 3594045 3594190 + 16 NA TTS (FBgn0053504) snRNA-TTS (FBgn0053504) 294 FBgn0053504 FBgn0053504 FBtr0100848 snRNA:U7 snRNA CTCF-S2-jox2017_R1_peak_2032 chrX 19933609 19933754 + 16 NA Intergenic Intergenic -11455 FBgn0053517 FBgn0053517 FBtr0091462 D2R protein_coding CTCF-S2-jox2017_R1_peak_837 chr3L 11317647 11317928 + 16 NA Intergenic Intergenic -2968 FBgn0036154 FBgn0036154 FBtr0076182 CG6168 protein_coding CTCF-S2-jox2017_R1_peak_1276 chr3R 14538195 14538451 + 16 NA exon (FBgn0015323, exon 2 of 2) protein_coding-exon (FBgn0015323, exon 2 of 2) 7067 FBgn0000303 FBgn0000303 FBtr0089368 Cha protein_coding CTCF-S2-jox2017_R1_peak_328 chr2R 1338590 1338738 + 16 NA intron (FBgn0259247, intron 5 of 5) protein_coding-intron (FBgn0259247, intron 4 of 5) 34807 FBgn0259247 FBgn0259247 FBtr0301063 laccase2 protein_coding CTCF-S2-jox2017_R1_peak_2052 chrX 21357443 21357588 + 16 NA Intergenic Intergenic -7543 FBgn0031181 FBgn0031181 FBtr0077213 Ir20a protein_coding CTCF-S2-jox2017_R1_peak_613 chr2R 20397573 20397849 + 16 NA exon (FBgn0019886, exon 5 of 5) protein_coding-exon (FBgn0019886, exon 5 of 5) 3313 FBgn0035014 FBgn0035014 FBtr0072300 CG13581 protein_coding CTCF-S2-jox2017_R1_peak_294 chr2L 20311604 20311779 + 16 NA exon (FBgn0003475, exon 1 of 17) protein_coding-exon (FBgn0003475, exon 1 of 17) 472 FBgn0003475 FBgn0003475 FBtr0081355 spir protein_coding CTCF-S2-jox2017_R1_peak_904 chr3L 15553275 15553576 + 15 NA TTS (FBgn0036509) protein_coding-TTS (FBgn0036509) 2740 FBgn0036509 FBgn0036509 FBtr0075596 CG7739 protein_coding CTCF-S2-jox2017_R1_peak_819 chr3L 10753963 10754191 + 15 NA Intergenic Intergenic -11015 FBgn0262890 FBgn0262890 FBtr0306304 CG43245 protein_coding CTCF-S2-jox2017_R1_peak_1061 chr3R 125452 125749 + 15 NA exon (FBgn0041605, exon 7 of 7) protein_coding-exon (FBgn0041605, exon 7 of 7) 4458 FBgn0262214 FBgn0262214 FBtr0304265 mir-929 pre_miRNA CTCF-S2-jox2017_R1_peak_1876 chrX 8404324 8404609 + 15 NA exon (FBgn0053181, exon 3 of 10) protein_coding-exon (FBgn0053181, exon 3 of 10) -6940 FBgn0002968 FBgn0002968 FBtr0301762 Nrg protein_coding CTCF-S2-jox2017_R1_peak_206 chr2L 13325818 13325963 + 15 NA intron (FBgn0264308, intron 1 of 5) protein_coding-intron (FBgn0264308, intron 1 of 5) 5231 FBgn0264308 FBgn0264308 FBtr0331504 CG43778 protein_coding CTCF-S2-jox2017_R1_peak_860 chr3L 12640783 12641061 + 15 NA exon (FBgn0052111, exon 7 of 7) protein_coding-exon (FBgn0052111, exon 7 of 7) 5268 FBgn0263379 FBgn0263379 FBtr0309061 CR43431 ncRNA CTCF-S2-jox2017_R1_peak_1504 chrU 89660 90274 + 15 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_882 chr3L 14303884 14304116 + 15 NA intron (FBgn0001085, intron 2 of 4) protein_coding-intron (FBgn0001085, intron 2 of 4) -18446 FBgn0036419 FBgn0036419 FBtr0075744 CG13482 protein_coding CTCF-S2-jox2017_R1_peak_101 chr2L 7075857 7076175 + 15 NA intron (FBgn0031888, intron 2 of 4) protein_coding-intron (FBgn0031888, intron 2 of 4) 8033 FBgn0031887 FBgn0031887 FBtr0289952 CG11289 protein_coding CTCF-S2-jox2017_R1_peak_1854 chrX 6270199 6270357 + 15 NA Intergenic Intergenic -3330 FBgn0003139 FBgn0003139 FBtr0331432 PpV protein_coding CTCF-S2-jox2017_R1_peak_951 chr3L 18214444 18214739 + 15 NA Intergenic Intergenic 19997 FBgn0036782 FBgn0036782 FBtr0310156 CG7320 protein_coding CTCF-S2-jox2017_R1_peak_1834 chrX 5065248 5065401 + 15 NA intron (FBgn0029746, intron 1 of 1) protein_coding-intron (FBgn0029746, intron 1 of 1) 5960 FBgn0029746 FBgn0029746 FBtr0070742 CG15465 protein_coding CTCF-S2-jox2017_R1_peak_1108 chr3R 3254740 3254885 + 15 NA Intergenic Intergenic 8325 FBgn0037502 FBgn0037502 FBtr0301649 wa-cup protein_coding CTCF-S2-jox2017_R1_peak_26 chr2L 1545378 1545523 + 15 NA Intergenic Intergenic -9680 FBgn0261509 FBgn0261509 FBtr0310020 haf protein_coding CTCF-S2-jox2017_R1_peak_1427 chr3R 25423953 25424131 + 15 NA TTS (FBgn0086361) protein_coding-TTS (FBgn0086361) 2542 FBgn0039673 FBgn0039673 FBtr0330294 CG7568 protein_coding CTCF-S2-jox2017_R1_peak_908 chr3L 15729082 15729227 + 15 NA Intergenic Intergenic -7624 FBgn0010105 FBgn0010105 FBtr0075579 comm protein_coding CTCF-S2-jox2017_R1_peak_59 chr2L 4366089 4366436 + 15 NA intron (FBgn0026319, intron 2 of 3) protein_coding-intron (FBgn0026319, intron 2 of 3) -12278 FBgn0026319 FBgn0026319 FBtr0290244 Traf4 protein_coding CTCF-S2-jox2017_R1_peak_865 chr3L 13139505 13139763 + 15 NA Intergenic Intergenic 10265 FBgn0053262 FBgn0053262 FBtr0302393 CG33262 protein_coding CTCF-S2-jox2017_R1_peak_918 chr3L 16428619 16428764 + 15 NA intron (FBgn0261799, intron 1 of 4) protein_coding-intron (FBgn0053158, intron 3 of 5) 15994 FBgn0053158 FBgn0053158 FBtr0075390 CG33158 protein_coding CTCF-S2-jox2017_R1_peak_1044 chr3LHet 1277092 1277332 + 15 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1506 chrU 137361 137743 + 15 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_727 chr3L 5392342 5392519 + 15 NA Intergenic Intergenic -16509 FBgn0035604 FBgn0035604 FBtr0077153 Ir64a protein_coding CTCF-S2-jox2017_R1_peak_1163 chr3R 6484048 6484201 + 15 NA exon (FBgn0085333, exon 2 of 4) protein_coding-exon (FBgn0085333, exon 2 of 4) 1956 FBgn0085333 FBgn0085333 FBtr0112500 CG34304 protein_coding CTCF-S2-jox2017_R1_peak_1561 chrUextra 6571680 6571905 + 15 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_76 chr2L 5355796 5355941 + 15 NA intron (FBgn0016920, intron 6 of 16) protein_coding-intron (FBgn0016920, intron 5 of 12) -13519 FBgn0031703 FBgn0031703 FBtr0079077 CG12512 protein_coding CTCF-S2-jox2017_R1_peak_1628 chrUextra 23407625 23407770 + 15 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_961 chr3L 18802299 18802512 + 15 NA exon (FBgn0036814, exon 3 of 6) protein_coding-exon (FBgn0036814, exon 3 of 6) 11370 FBgn0036814 FBgn0036814 FBtr0332801 CG14073 protein_coding CTCF-S2-jox2017_R1_peak_864 chr3L 13022343 13022688 + 15 NA intron (FBgn0083978, intron 1 of 4) protein_coding-intron (FBgn0083978, intron 1 of 4) 453 FBgn0083978 FBgn0083978 FBtr0110982 CG17672 protein_coding CTCF-S2-jox2017_R1_peak_1728 chrUextra 28817449 28817681 + 15 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1822 chrX 4029544 4029723 + 15 NA intron (FBgn0000635, intron 8 of 9) protein_coding-intron (FBgn0000635, intron 8 of 9) 4383 FBgn0066114 FBgn0066114 FBtr0070644 GlcAT-I protein_coding CTCF-S2-jox2017_R1_peak_1298 chr3R 15932058 15932261 + 14 NA TTS (FBgn0051206) protein_coding-TTS (FBgn0051206) 1564 FBgn0051206 FBgn0051206 FBtr0083875 CG31206 protein_coding CTCF-S2-jox2017_R1_peak_1341 chr3R 18917463 18917608 + 14 NA promoter-TSS (FBgn0039049) protein_coding-promoter-TSS (FBgn0039049) 36 FBgn0039049 FBgn0039049 FBtr0084349 CG6726 protein_coding CTCF-S2-jox2017_R1_peak_390 chr2R 5930452 5930641 + 14 NA exon (FBgn0085249, exon 2 of 2) protein_coding-exon (FBgn0085249, exon 2 of 2) 449 FBgn0085249 FBgn0085249 FBtr0112413 CG34220 protein_coding CTCF-S2-jox2017_R1_peak_1453 chr3RHet 166253 166398 + 14 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_629 chr2RHet 405293 405570 + 14 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_268 chr2L 18726465 18726744 + 14 NA intron (FBgn0032707, intron 1 of 1) protein_coding-intron (FBgn0032707, intron 1 of 1) 4815 FBgn0032707 FBgn0032707 FBtr0301647 CG10348 protein_coding CTCF-S2-jox2017_R1_peak_1134 chr3R 5267643 5267859 + 14 NA intron (FBgn0261552, intron 1 of 4) protein_coding-intron (FBgn0261552, intron 1 of 4) 14517 FBgn0037696 FBgn0037696 FBtr0082044 CG9362 protein_coding CTCF-S2-jox2017_R1_peak_1437 chr3R 26177492 26177748 + 14 NA intron (FBgn0010113, intron 2 of 5) protein_coding-intron (FBgn0010113, intron 2 of 5) 35721 FBgn0015222 FBgn0015222 FBtr0332170 Fer1HCH protein_coding CTCF-S2-jox2017_R1_peak_1485 chr4 370009 370154 + 14 NA intron (FBgn0259214, intron 13 of 16) protein_coding-intron (FBgn0259214, intron 13 of 17) 9202 FBgn0259214 FBgn0259214 FBtr0300559 PMCA protein_coding CTCF-S2-jox2017_R1_peak_851 chr3L 12059146 12059394 + 14 NA Intergenic Intergenic -1311 FBgn0041096 FBgn0041096 FBtr0334109 rols protein_coding CTCF-S2-jox2017_R1_peak_493 chr2R 11419738 11419883 + 14 NA promoter-TSS (FBgn0019968) protein_coding-promoter-TSS (FBgn0019968) -51 FBgn0019968 FBgn0019968 FBtr0329957 Khc-73 protein_coding CTCF-S2-jox2017_R1_peak_1379 chr3R 21251215 21251382 + 14 NA intron (FBgn0004509, intron 1 of 9) protein_coding-intron (FBgn0004509, intron 2 of 11) -24931 FBgn0051439 FBgn0051439 FBtr0084845 Muc96D protein_coding CTCF-S2-jox2017_R1_peak_168 chr2L 11214272 11214487 + 14 NA intron (FBgn0264442, intron 1 of 6) protein_coding-intron (FBgn0264442, intron 2 of 8) -8287 FBgn0264441 FBgn0264441 FBtr0332563 CR43859 ncRNA CTCF-S2-jox2017_R1_peak_598 chr2R 19042841 19042986 + 14 NA intron (FBgn0034829, intron 1 of 5) protein_coding-intron (FBgn0034829, intron 1 of 5) 1512 FBgn0034829 FBgn0034829 FBtr0071969 CG9899 protein_coding CTCF-S2-jox2017_R1_peak_1895 chrX 9898110 9898315 + 14 NA intron (FBgn0052694, intron 3 of 6) protein_coding-intron (FBgn0052694, intron 3 of 6) -5056 FBgn0053557 FBgn0053557 FBtr0091534 CG33557 protein_coding CTCF-S2-jox2017_R1_peak_107 chr2L 7334517 7334662 + 14 NA promoter-TSS (FBgn0031902) protein_coding-promoter-TSS (FBgn0031902) -212 FBgn0031902 FBgn0031902 FBtr0303251 Wnt6 protein_coding CTCF-S2-jox2017_R1_peak_1961 chrX 14895930 14896075 + 14 NA intron (FBgn0000535, intron 16 of 16) protein_coding-intron (FBgn0000535, intron 16 of 16) -22465 FBgn0052594 FBgn0052594 FBtr0310270 be protein_coding CTCF-S2-jox2017_R1_peak_1753 chrUextra 28923195 28923425 + 14 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1151 chr3R 5953636 5953892 + 14 NA exon (FBgn0004889, exon 5 of 5) protein_coding-exon (FBgn0004889, exon 5 of 5) -2378 FBgn0001321 FBgn0001321 FBtr0082194 knk protein_coding CTCF-S2-jox2017_R1_peak_1095 chr3R 2480843 2480988 + 14 NA intron (FBgn0010355, intron 15 of 15) protein_coding-intron (FBgn0010355, intron 13 of 13) 2293 FBgn0026566 FBgn0026566 FBtr0301623 CG1307 protein_coding CTCF-S2-jox2017_R1_peak_2019 chrX 18711441 18711731 + 14 NA intron (FBgn0259927, intron 1 of 10) protein_coding-intron (FBgn0259927, intron 1 of 9) 3929 FBgn0259927 FBgn0259927 FBtr0300218 CG42450 protein_coding CTCF-S2-jox2017_R1_peak_1494 chr4 578729 578946 + 14 NA promoter-TSS (FBgn0026869) protein_coding-promoter-TSS (FBgn0026869) -12 FBgn0022361 FBgn0022361 FBtr0310638 Pur-alpha protein_coding CTCF-S2-jox2017_R1_peak_1397 chr3R 22495964 22496134 + 14 NA intron (FBgn0250908, intron 1 of 8) protein_coding-intron (FBgn0250908, intron 1 of 8) 11639 FBgn0250908 FBgn0250908 FBtr0290328 beat-VII protein_coding CTCF-S2-jox2017_R1_peak_525 chr2R 14224321 14224621 + 14 NA intron (FBgn0010575, intron 1 of 10) protein_coding-intron (FBgn0010575, intron 1 of 11) 20330 FBgn0010575 FBgn0010575 FBtr0329996 sbb protein_coding CTCF-S2-jox2017_R1_peak_555 chr2R 16384962 16385227 + 14 NA Intergenic Intergenic -6026 FBgn0034509 FBgn0034509 FBtr0113099 Obp57c protein_coding CTCF-S2-jox2017_R1_peak_1767 chrX 387713 387922 + 14 NA promoter-TSS (FBgn0023537) protein_coding-promoter-TSS (FBgn0023537) -761 FBgn0023537 FBgn0023537 FBtr0070093 CG17896 protein_coding CTCF-S2-jox2017_R1_peak_2006 chrX 18065670 18065958 + 14 NA Intergenic Intergenic -5831 FBgn0083228 FBgn0083228 FBtr0301627 Frq2 protein_coding CTCF-S2-jox2017_R1_peak_147 chr2L 9753401 9753607 + 14 NA Intergenic Intergenic -3433 FBgn0015035 FBgn0015035 FBtr0079925 Cyp4e3 protein_coding CTCF-S2-jox2017_R1_peak_1874 chrX 7939428 7939573 + 14 NA intron (FBgn0004656, intron 6 of 10) protein_coding-intron (FBgn0004656, intron 6 of 10) -7950 FBgn0029990 FBgn0029990 FBtr0333311 CG2233 protein_coding CTCF-S2-jox2017_R1_peak_1133 chr3R 5021751 5021925 + 14 NA intron (FBgn0003165, intron 8 of 12) protein_coding-intron (FBgn0003165, intron 8 of 12) 18599 FBgn0037662 FBgn0037662 FBtr0081972 CG11997 protein_coding CTCF-S2-jox2017_R1_peak_1051 chr3LHet 2029947 2030247 + 14 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1978 chrX 16041817 16042067 + 14 NA exon (FBgn0042650, exon 1 of 4) protein_coding-exon (FBgn0042650, exon 1 of 4) -23577 FBgn0042650 FBgn0042650 FBtr0310303 disco-r protein_coding CTCF-S2-jox2017_R1_peak_1681 chrUextra 28348980 28349471 + 14 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1748 chrUextra 28911438 28911661 + 14 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_119 chr2L 8043830 8043975 + 14 NA exon (FBgn0031981, exon 1 of 6) protein_coding-exon (FBgn0031981, exon 1 of 6) 431 FBgn0031981 FBgn0031981 FBtr0079541 CG7466 protein_coding CTCF-S2-jox2017_R1_peak_1495 chr4 706357 706589 + 14 NA exon (FBgn0039920, exon 2 of 2) protein_coding-exon (FBgn0039920, exon 2 of 2) 10202 FBgn0026199 FBgn0026199 FBtr0089092 myo protein_coding CTCF-S2-jox2017_R1_peak_333 chr2R 1813624 1813961 + 14 NA exon (FBgn0263109, exon 4 of 4) protein_coding-exon (FBgn0263109, exon 4 of 4) -31568 FBgn0033047 FBgn0033047 FBtr0085966 CG7882 protein_coding CTCF-S2-jox2017_R1_peak_488 chr2R 11160000 11160179 + 14 NA exon (FBgn0083959, exon 17 of 25) protein_coding-exon (FBgn0083959, exon 17 of 25) 13817 FBgn0034005 FBgn0034005 FBtr0087371 alphaPS4 protein_coding CTCF-S2-jox2017_R1_peak_1958 chrX 14856729 14856874 + 13 NA intron (FBgn0000535, intron 2 of 16) protein_coding-intron (FBgn0000535, intron 2 of 16) 7291 FBgn0000535 FBgn0000535 FBtr0310015 eag protein_coding CTCF-S2-jox2017_R1_peak_695 chr3L 3756559 3756775 + 13 NA intron (FBgn0052264, intron 4 of 9) protein_coding-intron (FBgn0052264, intron 5 of 11) -1466 FBgn0035458 FBgn0035458 FBtr0303094 CG10858 protein_coding CTCF-S2-jox2017_R1_peak_1903 chrX 10549093 10549238 + 13 NA intron (FBgn0052677, intron 2 of 12) protein_coding-intron (FBgn0052677, intron 2 of 14) -2548 FBgn0030223 FBgn0030223 FBtr0071492 CG2111 protein_coding CTCF-S2-jox2017_R1_peak_396 chr2R 6166759 6167030 + 13 NA exon (FBgn0033504, exon 1 of 12) protein_coding-exon (FBgn0033504, exon 1 of 12) 643 FBgn0033504 FBgn0033504 FBtr0299828 CAP protein_coding CTCF-S2-jox2017_R1_peak_938 chr3L 17721693 17721852 + 13 NA exon (FBgn0036747, exon 1 of 2) protein_coding-exon (FBgn0036747, exon 1 of 2) 572 FBgn0036747 FBgn0036747 FBtr0075195 CG6052 protein_coding CTCF-S2-jox2017_R1_peak_1150 chr3R 5950783 5951529 + 13 NA TTS (FBgn0004889) protein_coding-TTS (FBgn0004889) 230 FBgn0001321 FBgn0001321 FBtr0082194 knk protein_coding CTCF-S2-jox2017_R1_peak_968 chr3L 19129495 19129742 + 13 NA exon (FBgn0036851, exon 2 of 5) protein_coding-exon (FBgn0036851, exon 2 of 5) 2457 FBgn0036851 FBgn0036851 FBtr0330092 CG14082 protein_coding CTCF-S2-jox2017_R1_peak_1617 chrUextra 20210089 20210545 + 13 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1645 chrUextra 25854955 25855159 + 13 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1820 chrX 3981197 3981493 + 13 NA TTS (FBgn0263772) protein_coding-TTS (FBgn0263772) 11238 FBgn0263772 FBgn0263772 FBtr0310493 CG43689 protein_coding CTCF-S2-jox2017_R1_peak_192 chr2L 12392303 12392548 + 13 NA intron (FBgn0262475, intron 8 of 9) protein_coding-intron (FBgn0262475, intron 7 of 9) -5849 FBgn0041195 FBgn0041195 FBtr0080365 Pkd2 protein_coding CTCF-S2-jox2017_R1_peak_1729 chrUextra 28820089 28820394 + 13 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_537 chr2R 14831044 14831303 + 13 NA intron (FBgn0034408, intron 4 of 7) protein_coding-intron (FBgn0034408, intron 4 of 7) 27483 FBgn0014269 FBgn0014269 FBtr0086601 prod protein_coding CTCF-S2-jox2017_R1_peak_685 chr3L 3264095 3264322 + 13 NA intron (FBgn0035427, intron 2 of 5) protein_coding-intron (FBgn0035427, intron 1 of 4) -4287 FBgn0085294 FBgn0085294 FBtr0331459 CG34265 protein_coding CTCF-S2-jox2017_R1_peak_637 chr2RHet 2819793 2820074 + 13 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_726 chr3L 5303166 5303408 + 13 NA Intergenic Intergenic -31897 FBgn0011986 FBgn0011986 FBtr0077142 tRNA:S7:64D tRNA CTCF-S2-jox2017_R1_peak_122 chr2L 8175077 8175315 + 13 NA exon (FBgn0031993, exon 8 of 30) protein_coding-exon (FBgn0031993, exon 8 of 30) -5026 FBgn0013442 FBgn0013442 FBtr0273229 fos28F protein_coding CTCF-S2-jox2017_R1_peak_816 chr3L 10464129 10464498 + 13 NA Intergenic Intergenic 4878 FBgn0045770 FBgn0045770 FBtr0334098 S-Lap3 protein_coding CTCF-S2-jox2017_R1_peak_1798 chrX 2796611 2796756 + 13 NA intron (FBgn0028369, intron 3 of 11) protein_coding-intron (FBgn0028369, intron 3 of 12) 11882 FBgn0040355 FBgn0040355 FBtr0070546 CG3526 protein_coding CTCF-S2-jox2017_R1_peak_1875 chrX 8118696 8118949 + 13 NA exon (FBgn0261873, exon 5 of 12) protein_coding-exon (FBgn0261873, exon 5 of 12) -15895 FBgn0030025 FBgn0030025 FBtr0071166 CG2147 protein_coding CTCF-S2-jox2017_R1_peak_1271 chr3R 13895745 13895890 + 13 NA Intergenic Intergenic -11026 FBgn0038566 FBgn0038566 FBtr0083541 CG14317 protein_coding CTCF-S2-jox2017_R1_peak_367 chr2R 4316791 4317016 + 13 NA TTS (FBgn0028836) protein_coding-TTS (FBgn0028836) 1834 FBgn0002531 FBgn0002531 FBtr0088763 Lcp1 protein_coding CTCF-S2-jox2017_R1_peak_531 chr2R 14515684 14515979 + 13 NA TTS (FBgn0034367) protein_coding-TTS (FBgn0034367) 432 FBgn0000566 FBgn0000566 FBtr0086710 Eip55E protein_coding CTCF-S2-jox2017_R1_peak_1167 chr3R 6904278 6904468 + 13 NA Intergenic Intergenic -9769 FBgn0263403 FBgn0263403 FBtr0309182 CG43449 protein_coding CTCF-S2-jox2017_R1_peak_467 chr2R 10053136 10053281 + 13 NA promoter-TSS (FBgn0033902) protein_coding-promoter-TSS (FBgn0033902) 648 FBgn0033903 FBgn0033903 FBtr0087521 CG8323 protein_coding CTCF-S2-jox2017_R1_peak_607 chr2R 19735179 19735346 + 13 NA TTS (FBgn0034914) protein_coding-TTS (FBgn0034914) 2560 FBgn0034915 FBgn0034915 FBtr0072235 eIF6 protein_coding CTCF-S2-jox2017_R1_peak_17 chr2L 753085 753330 + 13 NA exon (FBgn0031275, exon 1 of 10) protein_coding-exon (FBgn0031275, exon 1 of 10) 2598 FBgn0031275 FBgn0031275 FBtr0078002 GABA-B-R3 protein_coding CTCF-S2-jox2017_R1_peak_552 chr2R 16165931 16166152 + 13 NA TTS (FBgn0034497) protein_coding-TTS (FBgn0034497) 460 FBgn0034496 FBgn0034496 FBtr0086304 CG9143 protein_coding CTCF-S2-jox2017_R1_peak_2051 chrX 21307434 21307666 + 13 NA intron (FBgn0259245, intron 3 of 9) protein_coding-intron (FBgn0259245, intron 3 of 9) -7267 FBgn0031178 FBgn0031178 FBtr0077218 CG10918 protein_coding CTCF-S2-jox2017_R1_peak_681 chr3L 2938391 2938704 + 13 NA intron (FBgn0262593, intron 4 of 11) protein_coding-intron (FBgn0262593, intron 4 of 8) 13071 FBgn0052846 FBgn0052846 FBtr0304042 CG32846 protein_coding CTCF-S2-jox2017_R1_peak_2027 chrX 19429028 19429298 + 13 NA intron (FBgn0052532, intron 5 of 8) protein_coding-intron (FBgn0052532, intron 5 of 8) -3388 FBgn0031026 FBgn0031026 FBtr0074779 CG12231 protein_coding CTCF-S2-jox2017_R1_peak_853 chr3L 12085844 12086012 + 13 NA Intergenic Intergenic 4202 FBgn0036246 FBgn0036246 FBtr0075990 CG17154 protein_coding CTCF-S2-jox2017_R1_peak_1418 chr3R 24513837 24514034 + 13 NA intron (FBgn0039594, intron 2 of 10) protein_coding-intron (FBgn0039594, intron 1 of 9) 5872 FBgn0039594 FBgn0039594 FBtr0305087 CG9990 protein_coding CTCF-S2-jox2017_R1_peak_1267 chr3R 13725574 13725883 + 13 NA intron (FBgn0053547, intron 7 of 24) protein_coding-intron (FBgn0053547, intron 8 of 26) -6458 FBgn0038558 FBgn0038558 FBtr0308497 CG12347 protein_coding CTCF-S2-jox2017_R1_peak_630 chr2RHet 460350 460669 + 13 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_1921 chrX 12202046 12202257 + 13 NA intron (FBgn0259240, intron 12 of 17) protein_coding-intron (FBgn0259240, intron 9 of 14) -65093 FBgn0030384 FBgn0030384 FBtr0073643 CG2577 protein_coding CTCF-S2-jox2017_R1_peak_1783 chrX 1541089 1541310 + 13 NA intron (FBgn0000210, intron 7 of 7) protein_coding-intron (FBgn0000210, intron 7 of 7) -5155 FBgn0029584 FBgn0029584 FBtr0305287 CG11509 protein_coding CTCF-S2-jox2017_R1_peak_308 chr2L 21691308 21691468 + 13 NA intron (FBgn0051619, intron 3 of 19) protein_coding-intron (FBgn0051619, intron 3 of 18) 7206 FBgn0051619 FBgn0051619 FBtr0307497 CG31619 protein_coding CTCF-S2-jox2017_R1_peak_400 chr2R 6290939 6291157 + 12 NA intron (FBgn0261698, intron 2 of 27) protein_coding-intron (FBgn0261698, intron 2 of 27) 3902 FBgn0033516 FBgn0033516 FBtr0088321 CG12898 protein_coding CTCF-S2-jox2017_R1_peak_1141 chr3R 5647439 5647760 + 12 NA promoter-TSS (FBgn0262104) protein_coding-promoter-TSS (FBgn0262104) -686 FBgn0262104 FBgn0262104 FBtr0304028 CG42857 protein_coding CTCF-S2-jox2017_R1_peak_459 chr2R 9714136 9714355 + 12 NA promoter-TSS (FBgn0033872) protein_coding-promoter-TSS (FBgn0033872) -221 FBgn0033872 FBgn0033872 FBtr0087635 CG6329 protein_coding CTCF-S2-jox2017_R1_peak_475 chr2R 10371366 10371587 + 12 NA intron (FBgn0001332, intron 1 of 3) protein_coding-intron (FBgn0001332, intron 1 of 3) 2760 FBgn0001332 FBgn0001332 FBtr0087492 L protein_coding CTCF-S2-jox2017_R1_peak_1310 chr3R 16746038 16746259 + 12 NA intron (FBgn0038842, intron 1 of 7) protein_coding-intron (FBgn0038842, intron 1 of 5) 6125 FBgn0038842 FBgn0038842 FBtr0083979 CG5630 protein_coding CTCF-S2-jox2017_R1_peak_1287 chr3R 15482339 15482601 + 12 NA promoter-TSS (FBgn0038725) protein_coding-promoter-TSS (FBgn0038725) 1118 FBgn0038725 FBgn0038725 FBtr0083802 CG6184 protein_coding CTCF-S2-jox2017_R1_peak_1777 chrX 1215826 1216181 + 12 NA promoter-TSS (FBgn0004650) protein_coding-promoter-TSS (FBgn0004650) -543 FBgn0004650 FBgn0004650 FBtr0332286 fs(1)N protein_coding CTCF-S2-jox2017_R1_peak_247 chr2L 17137201 17137346 + 12 NA intron (FBgn0032627, intron 1 of 5) protein_coding-intron (FBgn0032627, intron 1 of 5) 3655 FBgn0032627 FBgn0032627 FBtr0303301 beat-IIIa protein_coding CTCF-S2-jox2017_R1_peak_1174 chr3R 7123336 7123531 + 12 NA intron (FBgn0051386, intron 1 of 4) ncRNA-intron (FBgn0051386, intron 1 of 4) 7897 FBgn0051386 FBgn0051386 FBtr0308921 CR31386 ncRNA CTCF-S2-jox2017_R1_peak_835 chr3L 11140682 11141047 + 12 NA intron (FBgn0052082, intron 1 of 12) protein_coding-intron (FBgn0052082, intron 1 of 11) 3021 FBgn0036139 FBgn0036139 FBtr0076221 CG6216 protein_coding CTCF-S2-jox2017_R1_peak_1181 chr3R 8028935 8029191 + 12 NA Intergenic Intergenic -3234 FBgn0051356 FBgn0051356 FBtr0082558 tRNA:CR31356 tRNA CTCF-S2-jox2017_R1_peak_1591 chrUextra 13275139 13275353 + 12 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_276 chr2L 19279401 19279597 + 12 NA Intergenic Intergenic -16606 FBgn0051797 FBgn0051797 FBtr0081227 CG31797 protein_coding CTCF-S2-jox2017_R1_peak_779 chr3L 8651188 8651353 + 12 NA Intergenic Intergenic 8699 FBgn0035922 FBgn0035922 FBtr0273328 Pex7 protein_coding CTCF-S2-jox2017_R1_peak_2026 chrX 19390977 19391169 + 12 NA intron (FBgn0027621, intron 1 of 1) protein_coding-intron (FBgn0027621, intron 1 of 1) -2048 FBgn0040890 FBgn0040890 FBtr0300214 ksh protein_coding CTCF-S2-jox2017_R1_peak_1685 chrUextra 28425869 28426057 + 12 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_946 chr3L 18055144 18055453 + 12 NA promoter-TSS (FBgn0000568) protein_coding-promoter-TSS (FBgn0000568) 2498 FBgn0000568 FBgn0000568 FBtr0075151 Eip75B protein_coding CTCF-S2-jox2017_R1_peak_1873 chrX 7638292 7638437 + 12 NA Intergenic Intergenic 7438 FBgn0016041 FBgn0016041 FBtr0071073 Tom40 protein_coding CTCF-S2-jox2017_R1_peak_356 chr2R 3922212 3922477 + 12 NA intron (FBgn0025360, intron 3 of 3) protein_coding-intron (FBgn0025360, intron 3 of 3) 3555 FBgn0025360 FBgn0025360 FBtr0088866 Optix protein_coding CTCF-S2-jox2017_R1_peak_241 chr2L 16631938 16632217 + 12 NA intron (FBgn0259735, intron 3 of 5) protein_coding-intron (FBgn0259735, intron 2 of 4) 24654 FBgn0032590 FBgn0032590 FBtr0080871 CG4631 protein_coding CTCF-S2-jox2017_R1_peak_2028 chrX 19554788 19554987 + 12 NA exon (FBgn0031053, exon 2 of 3) protein_coding-exon (FBgn0031053, exon 2 of 3) 1439 FBgn0031053 FBgn0031053 FBtr0332891 CG14223 protein_coding CTCF-S2-jox2017_R1_peak_538 chr2R 14873080 14873225 + 12 NA Intergenic Intergenic -1694 FBgn0034412 FBgn0034412 FBtr0086573 abba protein_coding CTCF-S2-jox2017_R1_peak_804 chr3L 9969591 9969773 + 12 NA intron (FBgn0040823, intron 1 of 6) protein_coding-intron (FBgn0040823, intron 1 of 5) 1931 FBgn0040823 FBgn0040823 FBtr0076353 dpr6 protein_coding CTCF-S2-jox2017_R1_peak_580 chr2R 17743351 17743532 + 11 NA Intergenic Intergenic -4915 FBgn0034666 FBgn0034666 FBtr0071720 CG9294 protein_coding CTCF-S2-jox2017_R1_peak_568 chr2R 17014387 17014608 + 11 NA exon (FBgn0020312, exon 2 of 4) protein_coding-exon (FBgn0020312, exon 2 of 4) 568 FBgn0020312 FBgn0020312 FBtr0071638 CG4050 protein_coding CTCF-S2-jox2017_R1_peak_189 chr2L 12337925 12338177 + 11 NA promoter-TSS (FBgn0051862) protein_coding-promoter-TSS (FBgn0051862) -797 FBgn0051862 FBgn0051862 FBtr0080350 CG31862 protein_coding CTCF-S2-jox2017_R1_peak_449 chr2R 9096783 9096968 + 11 NA TTS (FBgn0050058) protein_coding-TTS (FBgn0050058) 1399 FBgn0085341 FBgn0085341 FBtr0333152 CG34312 protein_coding CTCF-S2-jox2017_R1_peak_259 chr2L 18101770 18101915 + 11 NA Intergenic Intergenic 5274 FBgn0032664 FBgn0032664 FBtr0081033 CG5755 protein_coding CTCF-S2-jox2017_R1_peak_1466 chr3RHet 1745154 1745344 + 11 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_524 chr2R 13801662 13801807 + 11 NA exon (FBgn0011589, exon 11 of 17) protein_coding-exon (FBgn0011589, exon 11 of 17) 19151 FBgn0034284 FBgn0034284 FBtr0086803 CG14491 protein_coding CTCF-S2-jox2017_R1_peak_156 chr2L 9997224 9997369 + 11 NA promoter-TSS (FBgn0051875) protein_coding-promoter-TSS (FBgn0051875) 5150 FBgn0051875 FBgn0051875 FBtr0079973 CG31875 protein_coding CTCF-S2-jox2017_R1_peak_447 chr2R 8865429 8865625 + 11 NA exon (FBgn0005624, exon 2 of 5) protein_coding-exon (FBgn0005624, exon 2 of 5) 2967 FBgn0005624 FBgn0005624 FBtr0087798 Psc protein_coding CTCF-S2-jox2017_R1_peak_1383 chr3R 21622483 21622628 + 11 NA exon (FBgn0264429, exon 3 of 3) ncRNA-exon (FBgn0264429, exon 3 of 3) 945 FBgn0264429 FBgn0264429 FBtr0332549 CR43847 ncRNA CTCF-S2-jox2017_R1_peak_1517 chrU 1246508 1246653 + 11 NA NA NA NA NA CTCF-S2-jox2017_R1_peak_300 chr2L 20856942 20857087 + 11 NA TTS (FBgn0032895) protein_coding-TTS (FBgn0032895) 877 FBgn0032896 FBgn0032896 FBtr0081449 CG14400 protein_coding CTCF-S2-jox2017_R1_peak_134 chr2L 9405635 9405915 + 10 NA intron (FBgn0085395, intron 2 of 10) protein_coding-intron (FBgn0085395, intron 2 of 11) -7787 FBgn0032115 FBgn0032115 FBtr0079813 CG4438 protein_coding