PeakID (cmd=annotatePeaks.pl CG8478-S2-modencode_R2_peaks.broadPeak dm3.fa -gid -gtf Drosophila_melanogaster.BDGP5.78.chr.gtf -cpu 6) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type CG8478-S2-modencode_R2_peak_2628 chrUextra 19603906 19604033 + 165 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1197 chr3L 377852 378714 + 117 NA promoter-TSS (FBgn0262139) protein_coding-promoter-TSS (FBgn0262139) -967 FBgn0262139 FBgn0262139 FBtr0333902 trh protein_coding CG8478-S2-modencode_R2_peak_2981 chrX 9587482 9588454 + 104 NA promoter-TSS (FBgn0000233) protein_coding-promoter-TSS (FBgn0000233) -253 FBgn0000233 FBgn0000233 FBtr0071379 btd protein_coding CG8478-S2-modencode_R2_peak_2625 chrUextra 17026108 17026215 + 100 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1064 chr2R 15993714 15994390 + 96 NA Intergenic Intergenic -4964 FBgn0004364 FBgn0004364 FBtr0086309 18w protein_coding CG8478-S2-modencode_R2_peak_1976 chr3R 6361520 6361717 + 96 NA intron (FBgn0001235, intron 7 of 12) protein_coding-intron (FBgn0001235, intron 6 of 11) -22840 FBgn0263547 FBgn0263547 FBtr0309664 mir-4944 pre_miRNA CG8478-S2-modencode_R2_peak_3233 chrX 17662113 17662720 + 92 NA promoter-TSS (FBgn0024184) protein_coding-promoter-TSS (FBgn0024184) -1000 FBgn0024184 FBgn0024184 FBtr0074460 unc-4 protein_coding CG8478-S2-modencode_R2_peak_2137 chr3R 12589408 12590307 + 90 NA promoter-TSS (FBgn0084245) ncRNA-promoter-TSS (FBgn0084245) -416 FBgn0084245 FBgn0084245 FBtr0113490 tre-3 ncRNA CG8478-S2-modencode_R2_peak_2598 chrU 5289318 5289394 + 87 NA NA NA NA NA CG8478-S2-modencode_R2_peak_995 chr2R 14540105 14540743 + 86 NA promoter-TSS (FBgn0034371) protein_coding-promoter-TSS (FBgn0034371) -145 FBgn0034371 FBgn0034371 FBtr0086658 SP2637 protein_coding CG8478-S2-modencode_R2_peak_3198 chrX 16110651 16111922 + 86 NA promoter-TSS (FBgn0000459) protein_coding-promoter-TSS (FBgn0000459) -507 FBgn0000459 FBgn0000459 FBtr0100384 disco protein_coding CG8478-S2-modencode_R2_peak_805 chr2R 9844249 9846247 + 86 NA TTS (FBgn0033886) protein_coding-TTS (FBgn0033886) 346 FBgn0262739 FBgn0262739 FBtr0087613 AGO1 protein_coding CG8478-S2-modencode_R2_peak_1840 chr3R 2826361 2827049 + 85 NA Intergenic Intergenic -51352 FBgn0024289 FBgn0024289 FBtr0081627 Sodh-1 protein_coding CG8478-S2-modencode_R2_peak_1798 chr3R 677842 678763 + 85 NA promoter-TSS (FBgn0003002) protein_coding-promoter-TSS (FBgn0003002) -233 FBgn0003002 FBgn0003002 FBtr0078836 opa protein_coding CG8478-S2-modencode_R2_peak_132 chr2L 5460992 5461822 + 83 NA promoter-TSS (FBgn0261963) protein_coding-promoter-TSS (FBgn0261963) -234 FBgn0261963 FBgn0261963 FBtr0310358 mid protein_coding CG8478-S2-modencode_R2_peak_130 chr2L 5403531 5404017 + 81 NA promoter-TSS (FBgn0016660) protein_coding-promoter-TSS (FBgn0016660) -568 FBgn0016660 FBgn0016660 FBtr0079076 H15 protein_coding CG8478-S2-modencode_R2_peak_1562 chr3L 14355761 14357068 + 79 NA intron (FBgn0001085, intron 4 of 4) protein_coding-intron (FBgn0001085, intron 4 of 4) 6393 FBgn0036421 FBgn0036421 FBtr0113170 CG13481 protein_coding CG8478-S2-modencode_R2_peak_1977 chr3R 6440018 6440429 + 77 NA promoter-TSS (FBgn0001235) protein_coding-promoter-TSS (FBgn0001235) -8831 FBgn0001235 FBgn0001235 FBtr0100455 hth protein_coding CG8478-S2-modencode_R2_peak_45 chr2L 1644206 1645021 + 77 NA Intergenic Intergenic -6645 FBgn0086758 FBgn0086758 FBtr0077878 chinmo protein_coding CG8478-S2-modencode_R2_peak_728 chr2R 7415386 7416136 + 76 NA promoter-TSS (FBgn0000577) protein_coding-promoter-TSS (FBgn0000577) -373 FBgn0000577 FBgn0000577 FBtr0088096 en protein_coding CG8478-S2-modencode_R2_peak_3197 chrX 16043088 16043413 + 76 NA promoter-TSS (FBgn0042650) protein_coding-promoter-TSS (FBgn0042650) -24885 FBgn0042650 FBgn0042650 FBtr0310303 disco-r protein_coding CG8478-S2-modencode_R2_peak_294 chr2L 12586893 12587276 + 76 NA promoter-TSS (FBgn0085424) protein_coding-promoter-TSS (FBgn0085424) -31264 FBgn0085424 FBgn0085424 FBtr0112643 nub protein_coding CG8478-S2-modencode_R2_peak_2590 chrM 10351 10426 + 75 NA NA NA NA NA CG8478-S2-modencode_R2_peak_2821 chrX 5454466 5454983 + 75 NA promoter-TSS (FBgn0263512) protein_coding-promoter-TSS (FBgn0263512) -508 FBgn0263512 FBgn0263512 FBtr0100024 Vsx2 protein_coding CG8478-S2-modencode_R2_peak_2828 chrX 5640312 5641258 + 74 NA promoter-TSS (FBgn0029798) protein_coding-promoter-TSS (FBgn0029798) 502 FBgn0261383 FBgn0261383 FBtr0070842 IntS6 protein_coding CG8478-S2-modencode_R2_peak_1117 chr2R 17771488 17772233 + 74 NA intron (FBgn0085397, intron 1 of 6) protein_coding-intron (FBgn0085397, intron 1 of 4) 1043 FBgn0085397 FBgn0085397 FBtr0330338 Fili protein_coding CG8478-S2-modencode_R2_peak_2591 chrM 13529 13604 + 73 NA NA NA NA NA CG8478-S2-modencode_R2_peak_2032 chr3R 8889438 8890447 + 72 NA intron (FBgn0004666, intron 1 of 7) protein_coding-intron (FBgn0004666, intron 1 of 7) 6461 FBgn0004666 FBgn0004666 FBtr0082710 sim protein_coding CG8478-S2-modencode_R2_peak_2799 chrX 4318844 4319687 + 71 NA intron (FBgn0000179, intron 1 of 7) protein_coding-intron (FBgn0000179, intron 1 of 7) 12376 FBgn0000179 FBgn0000179 FBtr0300609 bi protein_coding CG8478-S2-modencode_R2_peak_260 chr2L 11445477 11446713 + 71 NA promoter-TSS (FBgn0261648) protein_coding-promoter-TSS (FBgn0261648) -492 FBgn0261648 FBgn0261648 FBtr0089913 salm protein_coding CG8478-S2-modencode_R2_peak_2800 chrX 4320637 4321270 + 70 NA promoter-TSS (FBgn0000179) protein_coding-promoter-TSS (FBgn0000179) 14064 FBgn0000179 FBgn0000179 FBtr0300609 bi protein_coding CG8478-S2-modencode_R2_peak_829 chr2R 10345389 10346029 + 70 NA promoter-TSS (FBgn0261613) protein_coding-promoter-TSS (FBgn0261613) 22305 FBgn0261613 FBgn0261613 FBtr0302926 Oaz protein_coding CG8478-S2-modencode_R2_peak_570 chr2R 4519684 4520549 + 70 NA promoter-TSS (FBgn0033317) protein_coding-promoter-TSS (FBgn0033317) -649 FBgn0033317 FBgn0033317 FBtr0088727 CG8635 protein_coding CG8478-S2-modencode_R2_peak_1669 chr3L 17994576 17997239 + 69 NA TTS (FBgn0086081) snoRNA-TTS (FBgn0086081) 271 FBgn0086081 FBgn0086081 FBtr0114357 snoRNA:Me28S-A30 snoRNA CG8478-S2-modencode_R2_peak_1797 chr3R 660842 661546 + 68 NA Intergenic Intergenic -4175 FBgn0037284 FBgn0037284 FBtr0078873 CG14659 protein_coding CG8478-S2-modencode_R2_peak_3289 chrX 20052837 20053779 + 68 NA exon (FBgn0031090, exon 1 of 3) protein_coding-exon (FBgn0031090, exon 1 of 3) 597 FBgn0031090 FBgn0031090 FBtr0333548 Rab35 protein_coding CG8478-S2-modencode_R2_peak_2621 chrUextra 7039482 7039692 + 68 NA NA NA NA NA CG8478-S2-modencode_R2_peak_2456 chr3R 25381837 25382165 + 67 NA promoter-TSS (FBgn0000492) protein_coding-promoter-TSS (FBgn0000492) -108 FBgn0000492 FBgn0000492 FBtr0085441 Dr protein_coding CG8478-S2-modencode_R2_peak_2136 chr3R 12528346 12529097 + 67 NA intron (FBgn0003944, intron 1 of 1) protein_coding-intron (FBgn0003944, intron 3 of 3) 31627 FBgn0003944 FBgn0003944 FBtr0083350 Ubx protein_coding CG8478-S2-modencode_R2_peak_2589 chrM 9742 9997 + 66 NA NA NA NA NA CG8478-S2-modencode_R2_peak_3120 chrX 12650294 12650855 + 66 NA TTS (FBgn0020513) protein_coding-TTS (FBgn0020513) 4076 FBgn0020513 FBgn0020513 FBtr0073705 ade5 protein_coding CG8478-S2-modencode_R2_peak_3118 chrX 12645238 12648451 + 66 NA Intergenic Intergenic 6494 FBgn0030418 FBgn0030418 FBtr0333722 CG4004 protein_coding CG8478-S2-modencode_R2_peak_2797 chrX 4305265 4305985 + 66 NA intron (FBgn0052773, intron 3 of 4) protein_coding-intron (FBgn0052773, intron 3 of 4) -1264 FBgn0000179 FBgn0000179 FBtr0300609 bi protein_coding CG8478-S2-modencode_R2_peak_2878 chrX 7520845 7521740 + 66 NA intron (FBgn0004198, intron 1 of 6) protein_coding-intron (FBgn0004198, intron 1 of 6) 18111 FBgn0004198 FBgn0004198 FBtr0071069 ct protein_coding CG8478-S2-modencode_R2_peak_60 chr2L 1972705 1973242 + 65 NA Intergenic Intergenic -1153 FBgn0031376 FBgn0031376 FBtr0077813 Der-1 protein_coding CG8478-S2-modencode_R2_peak_1839 chr3R 2756153 2756634 + 64 NA intron (FBgn0260642, intron 2 of 6) protein_coding-intron (FBgn0260642, intron 1 of 4) 2169 FBgn0260642 FBgn0260642 FBtr0081646 Antp protein_coding CG8478-S2-modencode_R2_peak_125 chr2L 5306413 5307115 + 64 NA intron (FBgn0016076, intron 1 of 2) protein_coding-intron (FBgn0016076, intron 1 of 2) 1042 FBgn0016076 FBgn0016076 FBtr0300020 vri protein_coding CG8478-S2-modencode_R2_peak_1687 chr3L 18752150 18752835 + 63 NA intron (FBgn0001078, intron 1 of 7) protein_coding-intron (FBgn0001078, intron 3 of 9) 6352 FBgn0001078 FBgn0001078 FBtr0075087 ftz-f1 protein_coding CG8478-S2-modencode_R2_peak_1066 chr2R 15998508 15999047 + 63 NA promoter-TSS (FBgn0004364) protein_coding-promoter-TSS (FBgn0004364) -239 FBgn0004364 FBgn0004364 FBtr0086309 18w protein_coding CG8478-S2-modencode_R2_peak_3090 chrX 12557292 12560015 + 62 NA intron (FBgn0011837, intron 2 of 3) protein_coding-intron (FBgn0011837, intron 2 of 3) 5158 FBgn0053963 FBgn0053963 FBtr0100004 CR33963 ncRNA CG8478-S2-modencode_R2_peak_3026 chrX 10418310 10419126 + 62 NA intron (FBgn0085443, intron 3 of 10) protein_coding-intron (FBgn0085443, intron 3 of 9) -38058 FBgn0052687 FBgn0052687 FBtr0071458 CG32687 protein_coding CG8478-S2-modencode_R2_peak_2246 chr3R 17259885 17260242 + 62 NA promoter-TSS (FBgn0008651) protein_coding-promoter-TSS (FBgn0008651) -208 FBgn0008651 FBgn0008651 FBtr0300061 lbl protein_coding CG8478-S2-modencode_R2_peak_2785 chrX 3755176 3755906 + 62 NA exon (FBgn0019661, exon 1 of 1) ncRNA-exon (FBgn0019661, exon 1 of 1) 917 FBgn0019661 FBgn0019661 FBtr0070634 roX1 ncRNA CG8478-S2-modencode_R2_peak_341 chr2L 16485803 16487109 + 62 NA promoter-TSS (FBgn0005677) protein_coding-promoter-TSS (FBgn0005677) -472 FBgn0005677 FBgn0005677 FBtr0080879 dac protein_coding CG8478-S2-modencode_R2_peak_2097 chr3R 11851210 11851989 + 62 NA promoter-TSS (FBgn0003117) protein_coding-promoter-TSS (FBgn0003117) -8513 FBgn0003117 FBgn0003117 FBtr0083221 pnr protein_coding CG8478-S2-modencode_R2_peak_2823 chrX 5487983 5488384 + 61 NA promoter-TSS (FBgn0263511) protein_coding-promoter-TSS (FBgn0263511) -123 FBgn0263511 FBgn0263511 FBtr0070781 Vsx1 protein_coding CG8478-S2-modencode_R2_peak_2915 chrX 8544683 8545700 + 61 NA promoter-TSS (FBgn0004102) protein_coding-promoter-TSS (FBgn0004102) -477 FBgn0004102 FBgn0004102 FBtr0331305 oc protein_coding CG8478-S2-modencode_R2_peak_3111 chrX 12628473 12631890 + 61 NA intron (FBgn0263865, intron 2 of 10) protein_coding-intron (FBgn0263865, intron 1 of 9) 6296 FBgn0263865 FBgn0263865 FBtr0333766 Smr protein_coding CG8478-S2-modencode_R2_peak_3196 chrX 16041648 16042664 + 61 NA exon (FBgn0042650, exon 1 of 4) protein_coding-exon (FBgn0042650, exon 1 of 4) -23791 FBgn0042650 FBgn0042650 FBtr0310303 disco-r protein_coding CG8478-S2-modencode_R2_peak_319 chr2L 14020098 14021202 + 61 NA promoter-TSS (FBgn0001967) protein_coding-promoter-TSS (FBgn0001967) -442 FBgn0001967 FBgn0001967 FBtr0290243 nimC3 protein_coding CG8478-S2-modencode_R2_peak_1979 chr3R 6447815 6448283 + 60 NA intron (FBgn0001235, intron 1 of 7) protein_coding-intron (FBgn0001235, intron 1 of 7) -16657 FBgn0001235 FBgn0001235 FBtr0100455 hth protein_coding CG8478-S2-modencode_R2_peak_1076 chr2R 16885369 16886851 + 59 NA intron (FBgn0034570, intron 1 of 6) protein_coding-intron (FBgn0034570, intron 1 of 6) 2385 FBgn0034570 FBgn0034570 FBtr0303195 CG10543 protein_coding CG8478-S2-modencode_R2_peak_2247 chr3R 17272075 17272538 + 59 NA promoter-TSS (FBgn0011278) protein_coding-promoter-TSS (FBgn0011278) -264 FBgn0011278 FBgn0011278 FBtr0084091 lbe protein_coding CG8478-S2-modencode_R2_peak_1501 chr3L 10849685 10850918 + 59 NA promoter-TSS (FBgn0026160) protein_coding-promoter-TSS (FBgn0026160) -1203 FBgn0026160 FBgn0026160 FBtr0076268 tna protein_coding CG8478-S2-modencode_R2_peak_393 chr2L 19398942 19399138 + 58 NA promoter-TSS (FBgn0032775) protein_coding-promoter-TSS (FBgn0032775) -548 FBgn0032775 FBgn0032775 FBtr0300822 CG17544 protein_coding CG8478-S2-modencode_R2_peak_626 chr2R 6310724 6311298 + 58 NA promoter-TSS (FBgn0033520) protein_coding-promoter-TSS (FBgn0033520) -930 FBgn0033520 FBgn0033520 FBtr0088261 Prx2540-1 protein_coding CG8478-S2-modencode_R2_peak_727 chr2R 7362808 7363289 + 58 NA promoter-TSS (FBgn0001269) protein_coding-promoter-TSS (FBgn0001269) -162 FBgn0001269 FBgn0001269 FBtr0088070 inv protein_coding CG8478-S2-modencode_R2_peak_2512 chr3R 26625496 26626833 + 58 NA exon (FBgn0011739, exon 2 of 8) protein_coding-exon (FBgn0011739, exon 2 of 8) 6177 FBgn0011739 FBgn0011739 FBtr0085720 wts protein_coding CG8478-S2-modencode_R2_peak_2518 chr3R 26737864 26738656 + 57 NA promoter-TSS (FBgn0020912) protein_coding-promoter-TSS (FBgn0020912) -350 FBgn0020912 FBgn0020912 FBtr0089390 Ptx1 protein_coding CG8478-S2-modencode_R2_peak_902 chr2R 12716152 12716929 + 56 NA promoter-TSS (FBgn0263659) ncRNA-promoter-TSS (FBgn0263659) -1655 FBgn0263659 FBgn0263659 FBtr0310103 CR43650 ncRNA CG8478-S2-modencode_R2_peak_1 chr2L 5133 6089 + 56 NA Intergenic Intergenic -1918 FBgn0031208 FBgn0031208 FBtr0330654 CG11023 protein_coding CG8478-S2-modencode_R2_peak_2977 chrX 9580306 9581323 + 56 NA promoter-TSS (FBgn0261617) protein_coding-promoter-TSS (FBgn0261617) -123 FBgn0261617 FBgn0261617 FBtr0302722 nej protein_coding CG8478-S2-modencode_R2_peak_1795 chr3R 628920 629360 + 56 NA intron (FBgn0260794, intron 1 of 10) protein_coding-intron (FBgn0260794, intron 1 of 11) 8643 FBgn0026417 FBgn0026417 FBtr0078876 Hus1-like protein_coding CG8478-S2-modencode_R2_peak_2088 chr3R 11619061 11620392 + 55 NA TTS (FBgn0038363) protein_coding-TTS (FBgn0038363) 187 FBgn0262527 FBgn0262527 FBtr0309863 wah protein_coding CG8478-S2-modencode_R2_peak_295 chr2L 12617841 12618611 + 55 NA promoter-TSS (FBgn0085424) protein_coding-promoter-TSS (FBgn0085424) -122 FBgn0085424 FBgn0085424 FBtr0112643 nub protein_coding CG8478-S2-modencode_R2_peak_3283 chrX 19760278 19761282 + 55 NA intron (FBgn0052529, intron 1 of 8) protein_coding-intron (FBgn0052529, intron 1 of 8) 601 FBgn0052529 FBgn0052529 FBtr0306523 Hers protein_coding CG8478-S2-modencode_R2_peak_3015 chrX 10366629 10369035 + 54 NA promoter-TSS (FBgn0030206) protein_coding-promoter-TSS (FBgn0030206) -212 FBgn0261710 FBgn0261710 FBtr0307488 nocte protein_coding CG8478-S2-modencode_R2_peak_2616 chrUextra 2684526 2684798 + 54 NA NA NA NA NA CG8478-S2-modencode_R2_peak_221 chr2L 8825056 8825769 + 54 NA promoter-TSS (FBgn0029123) protein_coding-promoter-TSS (FBgn0029123) -213 FBgn0029123 FBgn0029123 FBtr0330210 SoxN protein_coding CG8478-S2-modencode_R2_peak_2468 chr3R 25598302 25600250 + 54 NA exon (FBgn0001297, exon 1 of 3) protein_coding-exon (FBgn0001297, exon 1 of 3) 7177 FBgn0039694 FBgn0039694 FBtr0085538 fig protein_coding CG8478-S2-modencode_R2_peak_2914 chrX 8518715 8519253 + 54 NA Intergenic Intergenic -18649 FBgn0030054 FBgn0030054 FBtr0071228 Caf1-180 protein_coding CG8478-S2-modencode_R2_peak_340 chr2L 16422679 16423262 + 54 NA intron (FBgn0028523, intron 1 of 3) protein_coding-intron (FBgn0028523, intron 1 of 3) -5086 FBgn0086037 FBgn0086037 FBtr0114313 snoRNA:Me28S-A2958 snoRNA CG8478-S2-modencode_R2_peak_2075 chr3R 11112267 11112787 + 54 NA intron (FBgn0003721, intron 4 of 11) protein_coding-intron (FBgn0003721, intron 3 of 9) 5255 FBgn0003721 FBgn0003721 FBtr0305656 Tm1 protein_coding CG8478-S2-modencode_R2_peak_2104 chr3R 11925088 11926150 + 54 NA intron (FBgn0010379, intron 1 of 6) protein_coding-intron (FBgn0010379, intron 1 of 6) 681 FBgn0010379 FBgn0010379 FBtr0083228 Akt1 protein_coding CG8478-S2-modencode_R2_peak_1342 chr3L 4233644 4234308 + 54 NA intron (FBgn0001257, intron 1 of 2) protein_coding-intron (FBgn0001257, intron 1 of 2) -6332 FBgn0035515 FBgn0035515 FBtr0073226 CG14997 protein_coding CG8478-S2-modencode_R2_peak_2838 chrX 5907305 5907765 + 53 NA promoter-TSS (FBgn0029003) protein_coding-promoter-TSS (FBgn0029003) -324 FBgn0029003 FBgn0029003 FBtr0070890 mab-21 protein_coding CG8478-S2-modencode_R2_peak_2141 chr3R 12695106 12695495 + 53 NA intron (FBgn0263610, intron 4 of 7) ncRNA-intron (FBgn0263610, intron 3 of 6) 13263 FBgn0262462 FBgn0262462 FBtr0304522 mir-iab-4 pre_miRNA CG8478-S2-modencode_R2_peak_2845 chrX 6266762 6267487 + 53 NA promoter-TSS (FBgn0003139) protein_coding-promoter-TSS (FBgn0003139) -176 FBgn0003139 FBgn0003139 FBtr0331432 PpV protein_coding CG8478-S2-modencode_R2_peak_653 chr2R 6456052 6456714 + 53 NA promoter-TSS (FBgn0263102) protein_coding-promoter-TSS (FBgn0263102) 10990 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding CG8478-S2-modencode_R2_peak_1718 chr3L 19784513 19785422 + 52 NA promoter-TSS (FBgn0261360) protein_coding-promoter-TSS (FBgn0261360) 1702 FBgn0261688 FBgn0261688 FBtr0302280 Gyc76C protein_coding CG8478-S2-modencode_R2_peak_2127 chr3R 12228972 12229807 + 52 NA promoter-TSS (FBgn0003513) protein_coding-promoter-TSS (FBgn0003513) 23 FBgn0003513 FBgn0003513 FBtr0083318 ss protein_coding CG8478-S2-modencode_R2_peak_1835 chr3R 2718917 2719487 + 52 NA Intergenic Intergenic 11202 FBgn0262897 FBgn0262897 FBtr0306313 CG43252 protein_coding CG8478-S2-modencode_R2_peak_1246 chr3L 1177863 1178778 + 52 NA Intergenic Intergenic -1044 FBgn0025525 FBgn0025525 FBtr0333271 bab2 protein_coding CG8478-S2-modencode_R2_peak_2193 chr3R 14748939 14749814 + 52 NA promoter-TSS (FBgn0261113) protein_coding-promoter-TSS (FBgn0261113) 5020 FBgn0038662 FBgn0038662 FBtr0083723 CG14290 protein_coding CG8478-S2-modencode_R2_peak_2567 chr4 1009964 1010432 + 51 NA promoter-TSS (FBgn0019650) protein_coding-promoter-TSS (FBgn0019650) -153 FBgn0019650 FBgn0019650 FBtr0089185 toy protein_coding CG8478-S2-modencode_R2_peak_768 chr2R 8791617 8792263 + 51 NA Intergenic Intergenic -11562 FBgn0010488 FBgn0010488 FBtr0087787 NAT1 protein_coding CG8478-S2-modencode_R2_peak_2662 chrX 1515129 1516374 + 51 NA intron (FBgn0000210, intron 2 of 8) protein_coding-intron (FBgn0000210, intron 1 of 7) -3563 FBgn0025390 FBgn0025390 FBtr0070284 Mur2B protein_coding CG8478-S2-modencode_R2_peak_2394 chr3R 21943278 21943529 + 50 NA intron (FBgn0051324, intron 3 of 4) protein_coding-intron (FBgn0051324, intron 1 of 2) -8978 FBgn0039413 FBgn0039413 FBtr0273389 CG14556 protein_coding CG8478-S2-modencode_R2_peak_2653 chrX 1293057 1294234 + 50 NA Intergenic Intergenic 6558 FBgn0024985 FBgn0024985 FBtr0332292 CG11448 protein_coding CG8478-S2-modencode_R2_peak_1955 chr3R 5912819 5914085 + 50 NA Intergenic Intergenic -3451 FBgn0262378 FBgn0262378 FBtr0304218 mir-317 pre_miRNA CG8478-S2-modencode_R2_peak_1215 chr3L 616224 617115 + 49 NA promoter-TSS (FBgn0261636) protein_coding-promoter-TSS (FBgn0261636) -23 FBgn0261636 FBgn0261636 FBtr0303002 CG42719 protein_coding CG8478-S2-modencode_R2_peak_1198 chr3L 432554 433058 + 49 NA TTS (FBgn0035139) protein_coding-TTS (FBgn0035139) 1100 FBgn0035139 FBgn0035139 FBtr0072566 CG13891 protein_coding CG8478-S2-modencode_R2_peak_2580 chrM 627 797 + 49 NA NA NA NA NA CG8478-S2-modencode_R2_peak_624 chr2R 6305562 6305759 + 49 NA promoter-TSS (FBgn0033518) protein_coding-promoter-TSS (FBgn0033518) -563 FBgn0033518 FBgn0033518 FBtr0088259 Prx2540-2 protein_coding CG8478-S2-modencode_R2_peak_1539 chr3L 12602299 12602963 + 49 NA promoter-TSS (FBgn0015919) protein_coding-promoter-TSS (FBgn0015919) -100 FBgn0015919 FBgn0015919 FBtr0075909 caup protein_coding CG8478-S2-modencode_R2_peak_1374 chr3L 6735281 6736135 + 49 NA intron (FBgn0261934, intron 1 of 9) protein_coding-intron (FBgn0261934, intron 1 of 4) 556 FBgn0261934 FBgn0261934 FBtr0303748 dikar protein_coding CG8478-S2-modencode_R2_peak_1637 chr3L 17562895 17563961 + 49 NA intron (FBgn0000567, intron 5 of 7) protein_coding-intron (FBgn0000567, intron 5 of 7) -4166 FBgn0086080 FBgn0086080 FBtr0114356 snoRNA:Me28S-A576 snoRNA CG8478-S2-modencode_R2_peak_3009 chrX 10250561 10251134 + 48 NA TTS (FBgn0028331) protein_coding-TTS (FBgn0028331) 8644 FBgn0065046 FBgn0065046 FBtr0091641 snoRNA:U3:9B snoRNA CG8478-S2-modencode_R2_peak_262 chr2L 11516412 11516931 + 48 NA promoter-TSS (FBgn0032364) protein_coding-promoter-TSS (FBgn0032364) 364 FBgn0032363 FBgn0032363 FBtr0080247 CG6509 protein_coding CG8478-S2-modencode_R2_peak_2325 chr3R 19883003 19883310 + 48 NA promoter-TSS (FBgn0040283) protein_coding-promoter-TSS (FBgn0040283) -127 FBgn0001230 FBgn0001230 FBtr0084589 Hsp68 protein_coding CG8478-S2-modencode_R2_peak_2210 chr3R 16086586 16088022 + 48 NA intron (FBgn0262582, intron 2 of 18) protein_coding-intron (FBgn0262582, intron 2 of 18) -31683 FBgn0262582 FBgn0262582 FBtr0305031 cic protein_coding CG8478-S2-modencode_R2_peak_1871 chr3R 4016463 4017320 + 48 NA Intergenic Intergenic 6542 FBgn0262994 FBgn0262994 FBtr0306837 CR43302 ncRNA CG8478-S2-modencode_R2_peak_1753 chr3L 21472770 21473242 + 48 NA Intergenic Intergenic -3427 FBgn0014143 FBgn0014143 FBtr0078395 croc protein_coding CG8478-S2-modencode_R2_peak_2804 chrX 4578431 4578701 + 48 NA intron (FBgn0022768, intron 1 of 2) protein_coding-intron (FBgn0022768, intron 1 of 2) 2338 FBgn0022768 FBgn0022768 FBtr0070685 Pp2C1 protein_coding CG8478-S2-modencode_R2_peak_2039 chr3R 9700763 9701170 + 48 NA promoter-TSS (FBgn0008646) protein_coding-promoter-TSS (FBgn0008646) -328 FBgn0008646 FBgn0008646 FBtr0082880 E5 protein_coding CG8478-S2-modencode_R2_peak_1216 chr3L 626035 628684 + 48 NA Intergenic Intergenic -1111 FBgn0263039 FBgn0263039 FBtr0333724 CR43334 ncRNA CG8478-S2-modencode_R2_peak_1538 chr3L 12460886 12461632 + 47 NA promoter-TSS (FBgn0000625) protein_coding-promoter-TSS (FBgn0000625) -138 FBgn0000625 FBgn0000625 FBtr0100170 eyg protein_coding CG8478-S2-modencode_R2_peak_2349 chr3R 20455675 20456247 + 47 NA promoter-TSS (FBgn0039213) protein_coding-promoter-TSS (FBgn0039213) -57 FBgn0039213 FBgn0039213 FBtr0084657 atl protein_coding CG8478-S2-modencode_R2_peak_3047 chrX 10709550 10710057 + 47 NA promoter-TSS (FBgn0262735) protein_coding-promoter-TSS (FBgn0262735) -1677 FBgn0262735 FBgn0262735 FBtr0073419 Imp protein_coding CG8478-S2-modencode_R2_peak_2040 chr3R 9702972 9703253 + 47 NA Intergenic Intergenic -2474 FBgn0008646 FBgn0008646 FBtr0082880 E5 protein_coding CG8478-S2-modencode_R2_peak_2643 chrX 1081158 1081252 + 47 NA intron (FBgn0040360, intron 2 of 2) protein_coding-intron (FBgn0040360, intron 2 of 2) 2390 FBgn0040360 FBgn0040360 FBtr0070200 CG14626 protein_coding CG8478-S2-modencode_R2_peak_1124 chr2R 18129239 18130736 + 47 NA Intergenic Intergenic -14263 FBgn0034716 FBgn0034716 FBtr0301476 Oatp58Dc protein_coding CG8478-S2-modencode_R2_peak_2683 chrX 2051701 2053065 + 47 NA TTS (FBgn0005670) protein_coding-TTS (FBgn0005670) -2406 FBgn0004655 FBgn0004655 FBtr0070430 wapl protein_coding CG8478-S2-modencode_R2_peak_1073 chr2R 16790798 16791426 + 46 NA promoter-TSS (FBgn0015524) protein_coding-promoter-TSS (FBgn0015524) -212 FBgn0015524 FBgn0015524 FBtr0110772 otp protein_coding CG8478-S2-modencode_R2_peak_1030 chr2R 15180440 15181069 + 46 NA intron (FBgn0086358, intron 1 of 5) protein_coding-intron (FBgn0086358, intron 1 of 3) 720 FBgn0086358 FBgn0086358 FBtr0305333 Tab2 protein_coding CG8478-S2-modencode_R2_peak_411 chr2L 20770253 20771064 + 46 NA promoter-TSS (FBgn0000251) protein_coding-promoter-TSS (FBgn0000251) -236 FBgn0000251 FBgn0000251 FBtr0081413 cad protein_coding CG8478-S2-modencode_R2_peak_1629 chr3L 17480185 17480743 + 46 NA intron (FBgn0036732, intron 1 of 8) protein_coding-intron (FBgn0036732, intron 1 of 8) 246 FBgn0036732 FBgn0036732 FBtr0302041 Oatp74D protein_coding CG8478-S2-modencode_R2_peak_2435 chr3R 24498052 24498254 + 46 NA TTS (FBgn0039593) protein_coding-TTS (FBgn0039593) 1695 FBgn0039593 FBgn0039593 FBtr0085307 CG9989 protein_coding CG8478-S2-modencode_R2_peak_1641 chr3L 17570517 17571577 + 46 NA intron (FBgn0000567, intron 5 of 7) protein_coding-intron (FBgn0000567, intron 5 of 7) -11785 FBgn0086080 FBgn0086080 FBtr0114356 snoRNA:Me28S-A576 snoRNA CG8478-S2-modencode_R2_peak_773 chr2R 8878141 8878855 + 46 NA Intergenic Intergenic -2904 FBgn0053798 FBgn0053798 FBtr0091802 CG33798 protein_coding CG8478-S2-modencode_R2_peak_583 chr2R 5296443 5297304 + 46 NA exon (FBgn0016078, exon 2 of 7) protein_coding-exon (FBgn0016078, exon 2 of 7) 4092 FBgn0016078 FBgn0016078 FBtr0306111 wun protein_coding CG8478-S2-modencode_R2_peak_2816 chrX 4976321 4976583 + 45 NA exon (FBgn0052767, exon 1 of 5) protein_coding-exon (FBgn0052767, exon 1 of 5) 606 FBgn0052767 FBgn0052767 FBtr0300994 CG32767 protein_coding CG8478-S2-modencode_R2_peak_2172 chr3R 14069418 14070888 + 45 NA intron (FBgn0020238, intron 1 of 3) protein_coding-intron (FBgn0020238, intron 1 of 3) 1900 FBgn0020238 FBgn0020238 FBtr0083567 14-3-3epsilon protein_coding CG8478-S2-modencode_R2_peak_2588 chrM 8849 9214 + 45 NA NA NA NA NA CG8478-S2-modencode_R2_peak_2611 chrU 7544447 7545077 + 45 NA NA NA NA NA CG8478-S2-modencode_R2_peak_3274 chrX 19531232 19532178 + 44 NA exon (FBgn0087008, exon 1 of 12) protein_coding-exon (FBgn0087008, exon 1 of 12) 680 FBgn0087008 FBgn0087008 FBtr0074762 e(y)3 protein_coding CG8478-S2-modencode_R2_peak_2767 chrX 3638429 3639210 + 44 NA intron (FBgn0086899, intron 1 of 7) protein_coding-intron (FBgn0086899, intron 1 of 7) -25154 FBgn0015286 FBgn0015286 FBtr0070584 Rala protein_coding CG8478-S2-modencode_R2_peak_165 chr2L 7827981 7828901 + 44 NA intron (FBgn0004177, intron 1 of 3) protein_coding-intron (FBgn0004177, intron 1 of 3) 698 FBgn0004177 FBgn0004177 FBtr0079525 mts protein_coding CG8478-S2-modencode_R2_peak_1882 chr3R 4636176 4637734 + 44 NA intron (FBgn0037635, intron 1 of 1) protein_coding-intron (FBgn0037635, intron 1 of 1) -1422 FBgn0037635 FBgn0037635 FBtr0309099 CG9837 protein_coding CG8478-S2-modencode_R2_peak_3085 chrX 12548158 12548705 + 44 NA promoter-TSS (FBgn0015024) protein_coding-promoter-TSS (FBgn0015024) 615 FBgn0015024 FBgn0015024 FBtr0073682 CkIalpha protein_coding CG8478-S2-modencode_R2_peak_552 chr2R 3906207 3906817 + 44 NA Intergenic Intergenic 3702 FBgn0263572 FBgn0263572 FBtr0309728 mir-4981 pre_miRNA CG8478-S2-modencode_R2_peak_1354 chr3L 4625826 4626368 + 43 NA promoter-TSS (FBgn0015805) protein_coding-promoter-TSS (FBgn0015805) 35 FBgn0262733 FBgn0262733 FBtr0302594 Src64B protein_coding CG8478-S2-modencode_R2_peak_923 chr2R 13279915 13280385 + 43 NA promoter-TSS (FBgn0050232) tRNA-promoter-TSS (FBgn0050232) 430 FBgn0011879 FBgn0011879 FBtr0086908 tRNA:H:56E tRNA CG8478-S2-modencode_R2_peak_4 chr2L 128959 129680 + 43 NA promoter-TSS (FBgn0025683) protein_coding-promoter-TSS (FBgn0025683) -78 FBgn0025683 FBgn0025683 FBtr0100379 CG3164 protein_coding CG8478-S2-modencode_R2_peak_44 chr2L 1643627 1643925 + 43 NA Intergenic Intergenic -7482 FBgn0086758 FBgn0086758 FBtr0077878 chinmo protein_coding CG8478-S2-modencode_R2_peak_1001 chr2R 14575872 14576977 + 43 NA TTS (FBgn0262102) protein_coding-TTS (FBgn0262102) 787 FBgn0262103 FBgn0262103 FBtr0304024 Sik3 protein_coding CG8478-S2-modencode_R2_peak_736 chr2R 7490471 7491818 + 43 NA intron (FBgn0033636, intron 1 of 15) protein_coding-intron (FBgn0033636, intron 1 of 16) 1297 FBgn0033636 FBgn0033636 FBtr0088094 tou protein_coding CG8478-S2-modencode_R2_peak_3150 chrX 13888922 13889525 + 43 NA Intergenic Intergenic -1467 FBgn0000173 FBgn0000173 FBtr0332844 ben protein_coding CG8478-S2-modencode_R2_peak_2148 chr3R 12881791 12883143 + 43 NA intron (FBgn0020493, intron 2 of 7) protein_coding-intron (FBgn0020493, intron 2 of 7) 2738 FBgn0020493 FBgn0020493 FBtr0083394 Dad protein_coding CG8478-S2-modencode_R2_peak_1367 chr3L 5763316 5764257 + 43 NA promoter-TSS (FBgn0260936) protein_coding-promoter-TSS (FBgn0260936) -479 FBgn0260936 FBgn0260936 FBtr0330127 scny protein_coding CG8478-S2-modencode_R2_peak_59 chr2L 1970415 1971054 + 42 NA promoter-TSS (FBgn0031375) protein_coding-promoter-TSS (FBgn0031375) -3392 FBgn0031376 FBgn0031376 FBtr0077813 Der-1 protein_coding CG8478-S2-modencode_R2_peak_2437 chr3R 24672406 24673206 + 42 NA intron (FBgn0264324, intron 2 of 13) protein_coding-intron (FBgn0264324, intron 2 of 12) 1784 FBgn0264324 FBgn0264324 FBtr0330305 spg protein_coding CG8478-S2-modencode_R2_peak_3117 chrX 12644409 12645022 + 42 NA TTS (FBgn0030418) protein_coding-TTS (FBgn0030418) 4365 FBgn0030418 FBgn0030418 FBtr0333722 CG4004 protein_coding CG8478-S2-modencode_R2_peak_1870 chr3R 4007140 4007786 + 42 NA promoter-TSS (FBgn0001138) protein_coding-promoter-TSS (FBgn0001138) -299 FBgn0001138 FBgn0001138 FBtr0330188 grn protein_coding CG8478-S2-modencode_R2_peak_929 chr2R 13339228 13340170 + 42 NA intron (FBgn0028956, intron 1 of 8) protein_coding-intron (FBgn0028956, intron 1 of 8) 400 FBgn0028956 FBgn0028956 FBtr0086955 mthl3 protein_coding CG8478-S2-modencode_R2_peak_2592 chrM 15101 15753 + 42 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1126 chr2R 18158149 18158426 + 42 NA promoter-TSS (FBgn0020307) protein_coding-promoter-TSS (FBgn0020307) -138 FBgn0020307 FBgn0020307 FBtr0071776 dve protein_coding CG8478-S2-modencode_R2_peak_729 chr2R 7417032 7417313 + 42 NA Intergenic Intergenic -1784 FBgn0000577 FBgn0000577 FBtr0088096 en protein_coding CG8478-S2-modencode_R2_peak_433 chr2L 22024443 22024721 + 42 NA TTS (FBgn0028979) protein_coding-TTS (FBgn0028979) 4547 FBgn0028979 FBgn0028979 FBtr0089377 tio protein_coding CG8478-S2-modencode_R2_peak_2443 chr3R 25032502 25033077 + 42 NA Intergenic Intergenic -2934 FBgn0039651 FBgn0039651 FBtr0085406 CG14508 protein_coding CG8478-S2-modencode_R2_peak_2682 chrX 2049912 2050513 + 41 NA promoter-TSS (FBgn0004655) protein_coding-promoter-TSS (FBgn0004655) -235 FBgn0004655 FBgn0004655 FBtr0070430 wapl protein_coding CG8478-S2-modencode_R2_peak_2972 chrX 9560380 9561024 + 41 NA exon (FBgn0261617, exon 14 of 14) protein_coding-exon (FBgn0261617, exon 14 of 14) -3911 FBgn0030148 FBgn0030148 FBtr0071403 CG3106 protein_coding CG8478-S2-modencode_R2_peak_726 chr2R 7356725 7357442 + 41 NA Intergenic Intergenic -6127 FBgn0001269 FBgn0001269 FBtr0088070 inv protein_coding CG8478-S2-modencode_R2_peak_615 chr2R 5989134 5989480 + 41 NA intron (FBgn0004907, intron 1 of 6) protein_coding-intron (FBgn0004907, intron 1 of 6) -2216 FBgn0033485 FBgn0033485 FBtr0088425 RpLP0-like protein_coding CG8478-S2-modencode_R2_peak_649 chr2R 6451675 6453033 + 41 NA intron (FBgn0263102, intron 3 of 10) protein_coding-intron (FBgn0263102, intron 3 of 9) 6961 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding CG8478-S2-modencode_R2_peak_2884 chrX 7596594 7596993 + 41 NA intron (FBgn0029504, intron 1 of 5) protein_coding-intron (FBgn0029504, intron 1 of 5) -5015 FBgn0262979 FBgn0262979 FBtr0306815 CG43287 protein_coding CG8478-S2-modencode_R2_peak_521 chr2R 3418149 3418825 + 41 NA intron (FBgn0033188, intron 1 of 2) protein_coding-intron (FBgn0033188, intron 1 of 2) -1721 FBgn0033188 FBgn0033188 FBtr0088958 CG1600 protein_coding CG8478-S2-modencode_R2_peak_2975 chrX 9577786 9579292 + 41 NA intron (FBgn0261617, intron 1 of 13) protein_coding-intron (FBgn0261617, intron 1 of 13) 2152 FBgn0261617 FBgn0261617 FBtr0302722 nej protein_coding CG8478-S2-modencode_R2_peak_1546 chr3L 13221572 13221848 + 41 NA promoter-TSS (FBgn0023095) protein_coding-promoter-TSS (FBgn0023095) -82 FBgn0023095 FBgn0023095 FBtr0305480 caps protein_coding CG8478-S2-modencode_R2_peak_536 chr2R 3622219 3623175 + 41 NA exon (FBgn0042135, exon 1 of 13) protein_coding-exon (FBgn0042135, exon 1 of 13) 427 FBgn0042135 FBgn0042135 FBtr0330328 CG18812 protein_coding CG8478-S2-modencode_R2_peak_1978 chr3R 6442350 6443145 + 41 NA intron (FBgn0001235, intron 1 of 7) protein_coding-intron (FBgn0001235, intron 1 of 7) -11355 FBgn0001235 FBgn0001235 FBtr0100455 hth protein_coding CG8478-S2-modencode_R2_peak_117 chr2L 5092638 5093510 + 41 NA promoter-TSS (FBgn0031682) protein_coding-promoter-TSS (FBgn0031682) 518 FBgn0031681 FBgn0031681 FBtr0111024 pgant5 protein_coding CG8478-S2-modencode_R2_peak_87 chr2L 3533973 3534606 + 41 NA Intergenic Intergenic 3500 FBgn0031550 FBgn0031550 FBtr0077529 Che-13 protein_coding CG8478-S2-modencode_R2_peak_2690 chrX 2183144 2183451 + 40 NA intron (FBgn0023526, intron 2 of 2) protein_coding-intron (FBgn0023526, intron 1 of 1) 4147 FBgn0023526 FBgn0023526 FBtr0070408 CG2865 protein_coding CG8478-S2-modencode_R2_peak_1542 chr3L 12685818 12686870 + 40 NA promoter-TSS (FBgn0014343) protein_coding-promoter-TSS (FBgn0014343) -395 FBgn0014343 FBgn0014343 FBtr0075912 mirr protein_coding CG8478-S2-modencode_R2_peak_106 chr2L 4810103 4810571 + 40 NA Intergenic Intergenic -2672 FBgn0031630 FBgn0031630 FBtr0077383 CG15629 protein_coding CG8478-S2-modencode_R2_peak_2158 chr3R 13450344 13450420 + 40 NA promoter-TSS (FBgn0038530) protein_coding-promoter-TSS (FBgn0038530) -22 FBgn0011993 FBgn0011993 FBtr0083497 tRNA:T:90Ca tRNA CG8478-S2-modencode_R2_peak_3234 chrX 17683115 17683987 + 40 NA Intergenic Intergenic -1532 FBgn0026058 FBgn0026058 FBtr0074461 OdsH protein_coding CG8478-S2-modencode_R2_peak_2433 chr3R 24372984 24373350 + 40 NA Intergenic Intergenic -2643 FBgn0039588 FBgn0039588 FBtr0085293 CG12413 protein_coding CG8478-S2-modencode_R2_peak_2423 chr3R 23070261 23071497 + 40 NA promoter-TSS (FBgn0042111) protein_coding-promoter-TSS (FBgn0042111) -339 FBgn0042111 FBgn0042111 FBtr0333327 CG18766 protein_coding CG8478-S2-modencode_R2_peak_460 chr2R 1613927 1615173 + 40 NA promoter-TSS (FBgn0000099) protein_coding-promoter-TSS (FBgn0000099) -9996 FBgn0000099 FBgn0000099 FBtr0300504 ap protein_coding CG8478-S2-modencode_R2_peak_2919 chrX 8699991 8700170 + 40 NA promoter-TSS (FBgn0026411) protein_coding-promoter-TSS (FBgn0026411) -20694 FBgn0026411 FBgn0026411 FBtr0071279 Lim1 protein_coding CG8478-S2-modencode_R2_peak_2735 chrX 3272222 3276795 + 40 NA intron (FBgn0262656, intron 2 of 2) protein_coding-intron (FBgn0262656, intron 2 of 2) 7316 FBgn0262656 FBgn0262656 FBtr0070525 dm protein_coding CG8478-S2-modencode_R2_peak_1697 chr3L 18806999 18807852 + 40 NA intron (FBgn0036814, intron 2 of 5) protein_coding-intron (FBgn0036814, intron 2 of 5) 6350 FBgn0036814 FBgn0036814 FBtr0332801 CG14073 protein_coding CG8478-S2-modencode_R2_peak_1940 chr3R 5634540 5635031 + 40 NA exon (FBgn0037760, exon 1 of 4) protein_coding-exon (FBgn0037760, exon 1 of 4) 300 FBgn0037760 FBgn0037760 FBtr0082155 FBX011 protein_coding CG8478-S2-modencode_R2_peak_3209 chrX 16352623 16352938 + 40 NA TTS (FBgn0264255) protein_coding-TTS (FBgn0264255) 10070 FBgn0262734 FBgn0262734 FBtr0074281 Rbp2 protein_coding CG8478-S2-modencode_R2_peak_2285 chr3R 19120751 19121495 + 40 NA promoter-TSS (FBgn0003118) protein_coding-promoter-TSS (FBgn0003118) -5212 FBgn0039071 FBgn0039071 FBtr0084382 CG4434 protein_coding CG8478-S2-modencode_R2_peak_37 chr2L 594800 595523 + 39 NA promoter-TSS (FBgn0010323) protein_coding-promoter-TSS (FBgn0010323) -351 FBgn0010323 FBgn0010323 FBtr0078072 Gsc protein_coding CG8478-S2-modencode_R2_peak_1557 chr3L 14124355 14125246 + 39 NA promoter-TSS (FBgn0042630) protein_coding-promoter-TSS (FBgn0042630) -403 FBgn0042630 FBgn0042630 FBtr0330116 Sox21b protein_coding CG8478-S2-modencode_R2_peak_851 chr2R 11236821 11237561 + 39 NA promoter-TSS (FBgn0034013) protein_coding-promoter-TSS (FBgn0034013) -468 FBgn0034013 FBgn0034013 FBtr0087382 unc-5 protein_coding CG8478-S2-modencode_R2_peak_3146 chrX 13782976 13785339 + 39 NA intron (FBgn0263115, intron 3 of 7) protein_coding-intron (FBgn0263115, intron 2 of 4) -33000 FBgn0030532 FBgn0030532 FBtr0073829 CG11071 protein_coding CG8478-S2-modencode_R2_peak_2597 chrU 5288504 5288579 + 39 NA NA NA NA NA CG8478-S2-modencode_R2_peak_213 chr2L 8709018 8709166 + 39 NA promoter-TSS (FBgn0004914) protein_coding-promoter-TSS (FBgn0004914) 3520 FBgn0032061 FBgn0032061 FBtr0079731 CG9314 protein_coding CG8478-S2-modencode_R2_peak_493 chr2R 2389207 2389755 + 39 NA promoter-TSS (FBgn0086655) protein_coding-promoter-TSS (FBgn0086655) 31619 FBgn0264506 FBgn0264506 FBtr0332951 CR43905 ncRNA CG8478-S2-modencode_R2_peak_436 chr2L 22168561 22169373 + 39 NA exon (FBgn0032979, exon 1 of 7) protein_coding-exon (FBgn0032979, exon 1 of 7) 176 FBgn0032979 FBgn0032979 FBtr0085964 CG1832 protein_coding CG8478-S2-modencode_R2_peak_804 chr2R 9841130 9841969 + 39 NA promoter-TSS (FBgn0262739) protein_coding-promoter-TSS (FBgn0262739) -151 FBgn0050481 FBgn0050481 FBtr0100285 mRpL53 protein_coding CG8478-S2-modencode_R2_peak_625 chr2R 6308557 6309553 + 39 NA promoter-TSS (FBgn0053474) protein_coding-promoter-TSS (FBgn0053474) 141 FBgn0033519 FBgn0033519 FBtr0088316 CG11825 protein_coding CG8478-S2-modencode_R2_peak_2387 chr3R 21929179 21930797 + 39 NA Intergenic Intergenic -5555 FBgn0039411 FBgn0039411 FBtr0113293 dys protein_coding CG8478-S2-modencode_R2_peak_2254 chr3R 17477127 17477713 + 38 NA intron (FBgn0011766, intron 1 of 7) protein_coding-intron (FBgn0011766, intron 1 of 7) 11260 FBgn0038893 FBgn0038893 FBtr0084116 CG6353 protein_coding CG8478-S2-modencode_R2_peak_2593 chrM 17084 17432 + 38 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1832 chr3R 2645000 2645126 + 38 NA promoter-TSS (FBgn0026162) tRNA-promoter-TSS (FBgn0026162) -3 FBgn0051485 FBgn0051485 FBtr0081662 tRNA:CR31485:Psi pseudogene CG8478-S2-modencode_R2_peak_228 chr2L 9176007 9176708 + 38 NA promoter-TSS (FBgn0041092) protein_coding-promoter-TSS (FBgn0041092) 9579 FBgn0041092 FBgn0041092 FBtr0303872 tai protein_coding CG8478-S2-modencode_R2_peak_1519 chr3L 11485685 11486029 + 38 NA intron (FBgn0036165, intron 1 of 3) protein_coding-intron (FBgn0036165, intron 1 of 3) 5207 FBgn0036165 FBgn0036165 FBtr0076093 chrb protein_coding CG8478-S2-modencode_R2_peak_293 chr2L 12546010 12546428 + 38 NA exon (FBgn0259176, exon 1 of 7) protein_coding-exon (FBgn0259176, exon 1 of 7) 3043 FBgn0261709 FBgn0261709 FBtr0303215 CR42746 ncRNA CG8478-S2-modencode_R2_peak_2027 chr3R 8837708 8839050 + 38 NA intron (FBgn0020496, intron 1 of 5) protein_coding-intron (FBgn0020496, intron 1 of 5) 991 FBgn0020496 FBgn0020496 FBtr0082702 CtBP protein_coding CG8478-S2-modencode_R2_peak_594 chr2R 5579636 5580692 + 38 NA exon (FBgn0023143, exon 1 of 4) protein_coding-exon (FBgn0023143, exon 1 of 4) 669 FBgn0023143 FBgn0023143 FBtr0310357 Uba1 protein_coding CG8478-S2-modencode_R2_peak_2138 chr3R 12655751 12656078 + 38 NA promoter-TSS (FBgn0000014) protein_coding-promoter-TSS (FBgn0000014) -147 FBgn0000014 FBgn0000014 FBtr0083388 abd-A protein_coding CG8478-S2-modencode_R2_peak_660 chr2R 6491311 6492137 + 38 NA intron (FBgn0263102, intron 1 of 6) protein_coding-intron (FBgn0263102, intron 3 of 9) -17984 FBgn0033538 FBgn0033538 FBtr0113063 CG11883 protein_coding CG8478-S2-modencode_R2_peak_767 chr2R 8771586 8772447 + 38 NA exon (FBgn0003975, exon 1 of 8) protein_coding-exon (FBgn0003975, exon 1 of 8) 310 FBgn0003975 FBgn0003975 FBtr0087785 vg protein_coding CG8478-S2-modencode_R2_peak_446 chr2R 149850 149979 + 38 NA Intergenic Intergenic -19470 FBgn0262117 FBgn0262117 FBtr0111269 IntS3 protein_coding CG8478-S2-modencode_R2_peak_103 chr2L 4371734 4372083 + 38 NA promoter-TSS (FBgn0026319) protein_coding-promoter-TSS (FBgn0026319) -6632 FBgn0026319 FBgn0026319 FBtr0290244 Traf4 protein_coding CG8478-S2-modencode_R2_peak_1002 chr2R 14577303 14577889 + 37 NA intron (FBgn0262103, intron 1 of 7) protein_coding-intron (FBgn0262103, intron 1 of 7) 1959 FBgn0262103 FBgn0262103 FBtr0304024 Sik3 protein_coding CG8478-S2-modencode_R2_peak_1103 chr2R 17522075 17522880 + 37 NA promoter-TSS (FBgn0260720) ncRNA-promoter-TSS (FBgn0260720) 304 FBgn0034643 FBgn0034643 FBtr0330228 CG10321 protein_coding CG8478-S2-modencode_R2_peak_1695 chr3L 18793109 18794731 + 37 NA exon (FBgn0001078, exon 1 of 10) protein_coding-exon (FBgn0001078, exon 1 of 10) 19855 FBgn0036814 FBgn0036814 FBtr0332801 CG14073 protein_coding CG8478-S2-modencode_R2_peak_2904 chrX 7986856 7987708 + 37 NA intron (FBgn0029996, intron 1 of 1) protein_coding-intron (FBgn0029996, intron 1 of 1) -1157 FBgn0029996 FBgn0029996 FBtr0071114 Ubc-E2H protein_coding CG8478-S2-modencode_R2_peak_1906 chr3R 5060548 5060747 + 37 NA intron (FBgn0003165, intron 1 of 12) protein_coding-intron (FBgn0003165, intron 1 of 12) 5342 FBgn0000412 FBgn0000412 FBtr0301524 D1 protein_coding CG8478-S2-modencode_R2_peak_623 chr2R 6190289 6190779 + 37 NA promoter-TSS (FBgn0033504) protein_coding-promoter-TSS (FBgn0033504) 6742 FBgn0028426 FBgn0028426 FBtr0088360 JhI-1 protein_coding CG8478-S2-modencode_R2_peak_2346 chr3R 20412122 20412692 + 37 NA intron (FBgn0263490, intron 1 of 4) protein_coding-intron (FBgn0263490, intron 1 of 5) 1032 FBgn0263490 FBgn0263490 FBtr0304914 mld protein_coding CG8478-S2-modencode_R2_peak_2130 chr3R 12257266 12257659 + 37 NA promoter-TSS (FBgn0051282) tRNA-promoter-TSS (FBgn0051282) -200 FBgn0051282 FBgn0051282 FBtr0083285 tRNA:CR31282 tRNA CG8478-S2-modencode_R2_peak_2407 chr3R 22086813 22087493 + 36 NA promoter-TSS (FBgn0000064) protein_coding-promoter-TSS (FBgn0000064) 160 FBgn0000064 FBgn0000064 FBtr0085000 Ald protein_coding CG8478-S2-modencode_R2_peak_2867 chrX 7098657 7099235 + 36 NA intron (FBgn0029939, intron 1 of 3) protein_coding-intron (FBgn0029939, intron 2 of 5) 8884 FBgn0029939 FBgn0029939 FBtr0301241 CG9650 protein_coding CG8478-S2-modencode_R2_peak_1831 chr3R 2617245 2617471 + 36 NA promoter-TSS (FBgn0000439) protein_coding-promoter-TSS (FBgn0000439) -200 FBgn0000439 FBgn0000439 FBtr0081621 Dfd protein_coding CG8478-S2-modencode_R2_peak_3142 chrX 13633397 13634302 + 36 NA promoter-TSS (FBgn0030519) protein_coding-promoter-TSS (FBgn0030519) 34 FBgn0030519 FBgn0030519 FBtr0331719 CG11151 protein_coding CG8478-S2-modencode_R2_peak_1375 chr3L 6897108 6897576 + 36 NA Intergenic Intergenic 9722 FBgn0041194 FBgn0041194 FBtr0076946 Prat2 protein_coding CG8478-S2-modencode_R2_peak_2005 chr3R 8106510 8106872 + 36 NA promoter-TSS (FBgn0003651) protein_coding-promoter-TSS (FBgn0003651) -183 FBgn0003651 FBgn0003651 FBtr0331183 svp protein_coding CG8478-S2-modencode_R2_peak_3277 chrX 19591536 19591786 + 36 NA promoter-TSS (FBgn0010341) protein_coding-promoter-TSS (FBgn0010341) 156 FBgn0010341 FBgn0010341 FBtr0074752 Cdc42 protein_coding CG8478-S2-modencode_R2_peak_177 chr2L 8083275 8084917 + 36 NA intron (FBgn0261822, intron 1 of 6) protein_coding-intron (FBgn0261822, intron 1 of 6) -1114 FBgn0020240 FBgn0020240 FBtr0079543 Mcr protein_coding CG8478-S2-modencode_R2_peak_1877 chr3R 4495020 4495513 + 36 NA promoter-TSS (FBgn0037607) protein_coding-promoter-TSS (FBgn0037607) -370 FBgn0012024 FBgn0012024 FBtr0081884 tRNA:Y1:85Aa tRNA CG8478-S2-modencode_R2_peak_774 chr2R 8879057 8879552 + 36 NA Intergenic Intergenic -2098 FBgn0053798 FBgn0053798 FBtr0091802 CG33798 protein_coding CG8478-S2-modencode_R2_peak_3012 chrX 10357291 10357656 + 36 NA TTS (FBgn0261710) protein_coding-TTS (FBgn0261710) 2704 FBgn0083167 FBgn0083167 FBtr0071449 Neb-cGP protein_coding CG8478-S2-modencode_R2_peak_139 chr2L 6323700 6324589 + 36 NA intron (FBgn0021873, intron 1 of 6) protein_coding-intron (FBgn0021873, intron 1 of 7) 377 FBgn0021873 FBgn0021873 FBtr0300039 Gef26 protein_coding CG8478-S2-modencode_R2_peak_1826 chr3R 2504155 2504690 + 36 NA promoter-TSS (FBgn0002522) protein_coding-promoter-TSS (FBgn0002522) -5750 FBgn0000552 FBgn0000552 FBtr0081688 Edg84A protein_coding CG8478-S2-modencode_R2_peak_2920 chrX 8700436 8701753 + 36 NA Intergenic Intergenic -21708 FBgn0026411 FBgn0026411 FBtr0071279 Lim1 protein_coding CG8478-S2-modencode_R2_peak_539 chr2R 3632587 3633431 + 35 NA promoter-TSS (FBgn0050497) protein_coding-promoter-TSS (FBgn0050497) -207 FBgn0050497 FBgn0050497 FBtr0088932 CG30497 protein_coding CG8478-S2-modencode_R2_peak_1537 chr3L 12427582 12427946 + 35 NA Intergenic Intergenic -1996 FBgn0036285 FBgn0036285 FBtr0332087 toe protein_coding CG8478-S2-modencode_R2_peak_3223 chrX 16970407 16972086 + 35 NA exon (FBgn0030812, exon 2 of 15) protein_coding-exon (FBgn0030812, exon 2 of 15) 684 FBgn0030812 FBgn0030812 FBtr0310525 CG8949 protein_coding CG8478-S2-modencode_R2_peak_2309 chr3R 19200303 19201146 + 35 NA TTS (FBgn0262010) protein_coding-TTS (FBgn0262010) 1299 FBgn0262010 FBgn0262010 FBtr0303835 CG42828 protein_coding CG8478-S2-modencode_R2_peak_2980 chrX 9586572 9587254 + 35 NA Intergenic Intergenic -1308 FBgn0000233 FBgn0000233 FBtr0071379 btd protein_coding CG8478-S2-modencode_R2_peak_439 chr2L 22365163 22365895 + 35 NA exon (FBgn0039972, exon 4 of 7) protein_coding-exon (FBgn0039972, exon 4 of 7) 11174 FBgn0039972 FBgn0039972 FBtr0306236 CG17018 protein_coding CG8478-S2-modencode_R2_peak_3273 chrX 19471976 19473642 + 35 NA intron (FBgn0031030, intron 1 of 12) protein_coding-intron (FBgn0031030, intron 1 of 12) 964 FBgn0031030 FBgn0031030 FBtr0309237 Tao protein_coding CG8478-S2-modencode_R2_peak_2780 chrX 3671155 3671806 + 35 NA promoter-TSS (FBgn0263532) pre_miRNA-promoter-TSS (FBgn0263532) -9 FBgn0263532 FBgn0263532 FBtr0309622 mir-4962 pre_miRNA CG8478-S2-modencode_R2_peak_2871 chrX 7201553 7202085 + 35 NA promoter-TSS (FBgn0024250) protein_coding-promoter-TSS (FBgn0024250) -155 FBgn0024250 FBgn0024250 FBtr0071048 brk protein_coding CG8478-S2-modencode_R2_peak_2634 chrX 530066 531452 + 35 NA promoter-TSS (FBgn0020381) protein_coding-promoter-TSS (FBgn0020381) 839 FBgn0003575 FBgn0003575 FBtr0070120 su(s) protein_coding CG8478-S2-modencode_R2_peak_757 chr2R 8340751 8341184 + 35 NA TTS (FBgn0033739) protein_coding-TTS (FBgn0033739) 271 FBgn0010238 FBgn0010238 FBtr0087933 Lac protein_coding CG8478-S2-modencode_R2_peak_1804 chr3R 1089679 1090483 + 35 NA promoter-TSS (FBgn0264652) protein_coding-promoter-TSS (FBgn0264652) -585 FBgn0264652 FBgn0264652 FBtr0078782 Hph protein_coding CG8478-S2-modencode_R2_peak_1275 chr3L 2822896 2824486 + 35 NA intron (FBgn0263392, intron 5 of 10) protein_coding-intron (FBgn0263392, intron 4 of 9) 41436 FBgn0035375 FBgn0035375 FBtr0333442 pgant6 protein_coding CG8478-S2-modencode_R2_peak_1205 chr3L 548207 550754 + 35 NA intron (FBgn0035142, intron 2 of 10) protein_coding-intron (FBgn0035142, intron 2 of 10) -6549 FBgn0035141 FBgn0035141 FBtr0072564 Cypl protein_coding CG8478-S2-modencode_R2_peak_832 chr2R 10391505 10392193 + 35 NA promoter-TSS (FBgn0024698) protein_coding-promoter-TSS (FBgn0024698) 386 FBgn0261823 FBgn0261823 FBtr0100154 Asx protein_coding CG8478-S2-modencode_R2_peak_3066 chrX 11583454 11584055 + 34 NA intron (FBgn0014133, intron 5 of 5) protein_coding-intron (FBgn0014133, intron 5 of 5) -5391 FBgn0011754 FBgn0011754 FBtr0301500 PhKgamma protein_coding CG8478-S2-modencode_R2_peak_3119 chrX 12649065 12650071 + 34 NA Intergenic Intergenic 5082 FBgn0020513 FBgn0020513 FBtr0073705 ade5 protein_coding CG8478-S2-modencode_R2_peak_2515 chr3R 26631408 26631966 + 34 NA intron (FBgn0011739, intron 1 of 7) protein_coding-intron (FBgn0011739, intron 1 of 7) 654 FBgn0011739 FBgn0011739 FBtr0085720 wts protein_coding CG8478-S2-modencode_R2_peak_1305 chr3L 3417583 3418833 + 34 NA promoter-TSS (FBgn0014388) protein_coding-promoter-TSS (FBgn0014388) -281 FBgn0014388 FBgn0014388 FBtr0073146 sty protein_coding CG8478-S2-modencode_R2_peak_3098 chrX 12609736 12610209 + 34 NA intron (FBgn0263865, intron 3 of 10) protein_coding-intron (FBgn0263865, intron 2 of 9) 2521 FBgn0264678 FBgn0264678 FBtr0333775 CR43963 ncRNA CG8478-S2-modencode_R2_peak_2501 chr3R 26287600 26288052 + 34 NA intron (FBgn0039774, intron 1 of 6) protein_coding-intron (FBgn0039774, intron 1 of 5) 2583 FBgn0039774 FBgn0039774 FBtr0085649 CDase protein_coding CG8478-S2-modencode_R2_peak_1635 chr3L 17556633 17557309 + 34 NA intron (FBgn0000567, intron 7 of 7) protein_coding-intron (FBgn0000567, intron 7 of 7) 2291 FBgn0086080 FBgn0086080 FBtr0114356 snoRNA:Me28S-A576 snoRNA CG8478-S2-modencode_R2_peak_264 chr2L 11806002 11808324 + 34 NA intron (FBgn0020309, intron 1 of 7) protein_coding-intron (FBgn0020309, intron 1 of 7) 1809 FBgn0020309 FBgn0020309 FBtr0305262 crol protein_coding CG8478-S2-modencode_R2_peak_120 chr2L 5292072 5293860 + 34 NA Intergenic Intergenic -12756 FBgn0016076 FBgn0016076 FBtr0300020 vri protein_coding CG8478-S2-modencode_R2_peak_580 chr2R 5171791 5172509 + 34 NA TTS (FBgn0033400) protein_coding-TTS (FBgn0033400) 452 FBgn0020621 FBgn0020621 FBtr0302603 Pkn protein_coding CG8478-S2-modencode_R2_peak_3205 chrX 16342797 16343671 + 34 NA promoter-TSS (FBgn0054015) protein_coding-promoter-TSS (FBgn0054015) 524 FBgn0262734 FBgn0262734 FBtr0074281 Rbp2 protein_coding CG8478-S2-modencode_R2_peak_821 chr2R 10021660 10022704 + 34 NA intron (FBgn0040752, intron 1 of 11) protein_coding-intron (FBgn0040752, intron 1 of 11) 6221 FBgn0040752 FBgn0040752 FBtr0087601 Prosap protein_coding CG8478-S2-modencode_R2_peak_1805 chr3R 1108379 1108950 + 34 NA exon (FBgn0013576, exon 1 of 5) protein_coding-exon (FBgn0013576, exon 1 of 5) -5107 FBgn0051538 FBgn0051538 FBtr0078819 CG31538 protein_coding CG8478-S2-modencode_R2_peak_110 chr2L 5001312 5001675 + 34 NA intron (FBgn0053113, intron 1 of 4) protein_coding-intron (FBgn0053113, intron 1 of 4) 3435 FBgn0053113 FBgn0053113 FBtr0301538 Rtnl1 protein_coding CG8478-S2-modencode_R2_peak_1276 chr3L 2866964 2867905 + 34 NA intron (FBgn0263392, intron 3 of 10) protein_coding-intron (FBgn0263392, intron 3 of 9) 11724 FBgn0263392 FBgn0263392 FBtr0309119 CG43444 protein_coding CG8478-S2-modencode_R2_peak_1876 chr3R 4485063 4485637 + 34 NA intron (FBgn0263231, intron 1 of 3) protein_coding-intron (FBgn0263231, intron 1 of 3) 1133 FBgn0263231 FBgn0263231 FBtr0081888 bel protein_coding CG8478-S2-modencode_R2_peak_269 chr2L 12404498 12404963 + 34 NA promoter-TSS (FBgn0043841) protein_coding-promoter-TSS (FBgn0043841) 6456 FBgn0041195 FBgn0041195 FBtr0080365 Pkd2 protein_coding CG8478-S2-modencode_R2_peak_209 chr2L 8690982 8692059 + 34 NA promoter-TSS (FBgn0004914) protein_coding-promoter-TSS (FBgn0004914) 5289 FBgn0260861 FBgn0260861 FBtr0079730 Trs23 protein_coding CG8478-S2-modencode_R2_peak_3193 chrX 15754359 15755052 + 34 NA intron (FBgn0001105, intron 1 of 2) protein_coding-intron (FBgn0001105, intron 1 of 3) 557 FBgn0001105 FBgn0001105 FBtr0074107 Gbeta13F protein_coding CG8478-S2-modencode_R2_peak_2860 chrX 6753340 6754351 + 34 NA Intergenic Intergenic -7174 FBgn0029915 FBgn0029915 FBtr0071040 CG14434 protein_coding CG8478-S2-modencode_R2_peak_2384 chr3R 21867545 21868744 + 34 NA promoter-TSS (FBgn0001139) protein_coding-promoter-TSS (FBgn0001139) 712 FBgn0001139 FBgn0001139 FBtr0084965 gro protein_coding CG8478-S2-modencode_R2_peak_3301 chrX 21102528 21103102 + 34 NA promoter-TSS (FBgn0011954) tRNA-promoter-TSS (FBgn0011954) -303 FBgn0011954 FBgn0011954 FBtr0077184 tRNA:R:19F tRNA CG8478-S2-modencode_R2_peak_2179 chr3R 14273729 14275101 + 34 NA intron (FBgn0004652, intron 2 of 7) protein_coding-intron (FBgn0004652, intron 2 of 7) -37062 FBgn0038621 FBgn0038621 FBtr0083654 CG10864 protein_coding CG8478-S2-modencode_R2_peak_2366 chr3R 21343598 21344660 + 34 NA promoter-TSS (FBgn0011666) protein_coding-promoter-TSS (FBgn0011666) 12132 FBgn0039343 FBgn0039343 FBtr0084880 CG5111 protein_coding CG8478-S2-modencode_R2_peak_1277 chr3L 3035149 3035754 + 34 NA promoter-TSS (FBgn0035388) protein_coding-promoter-TSS (FBgn0035388) -542 FBgn0035388 FBgn0035388 FBtr0300175 CG2162 protein_coding CG8478-S2-modencode_R2_peak_1471 chr3L 10318084 10318599 + 34 NA Intergenic Intergenic 5395 FBgn0262381 FBgn0262381 FBtr0304227 mir-276b pre_miRNA CG8478-S2-modencode_R2_peak_2183 chr3R 14299959 14300631 + 34 NA intron (FBgn0004652, intron 2 of 8) protein_coding-intron (FBgn0004652, intron 2 of 7) -62942 FBgn0038621 FBgn0038621 FBtr0083654 CG10864 protein_coding CG8478-S2-modencode_R2_peak_693 chr2R 6984954 6986211 + 33 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) 8739 FBgn0040765 FBgn0040765 FBtr0088210 luna protein_coding CG8478-S2-modencode_R2_peak_2505 chr3R 26589901 26590643 + 33 NA Intergenic Intergenic -1376 FBgn0004606 FBgn0004606 FBtr0085702 zfh1 protein_coding CG8478-S2-modencode_R2_peak_64 chr2L 2129984 2130877 + 33 NA promoter-TSS (FBgn0004507) protein_coding-promoter-TSS (FBgn0004507) -385 FBgn0004507 FBgn0004507 FBtr0100485 GlyP protein_coding CG8478-S2-modencode_R2_peak_1271 chr3L 2634897 2635379 + 33 NA promoter-TSS (FBgn0035357) protein_coding-promoter-TSS (FBgn0035357) 3423 FBgn0035357 FBgn0035357 FBtr0072936 MEP-1 protein_coding CG8478-S2-modencode_R2_peak_427 chr2L 21397268 21397551 + 33 NA Intergenic Intergenic -6706 FBgn0051616 FBgn0051616 FBtr0085889 His-Psi:CR31616 pseudogene CG8478-S2-modencode_R2_peak_2139 chr3R 12672962 12673223 + 33 NA intron (FBgn0263610, intron 5 of 7) ncRNA-intron (FBgn0263610, intron 4 of 6) -2634 FBgn0020546 FBgn0020546 FBtr0083363 iab-4 ncRNA CG8478-S2-modencode_R2_peak_3215 chrX 16501979 16502192 + 33 NA intron (FBgn0061200, intron 6 of 6) protein_coding-intron (FBgn0061200, intron 7 of 7) 1891 FBgn0263538 FBgn0263538 FBtr0309639 mir-4965 pre_miRNA CG8478-S2-modencode_R2_peak_1980 chr3R 6490805 6491076 + 33 NA Intergenic Intergenic 8772 FBgn0085333 FBgn0085333 FBtr0112500 CG34304 protein_coding CG8478-S2-modencode_R2_peak_1951 chr3R 5908135 5909194 + 33 NA Intergenic Intergenic -7569 FBgn0037786 FBgn0037786 FBtr0309853 CG5361 protein_coding CG8478-S2-modencode_R2_peak_3035 chrX 10496393 10496697 + 33 NA promoter-TSS (FBgn0030218) protein_coding-promoter-TSS (FBgn0030218) -866 FBgn0030218 FBgn0030218 FBtr0071510 CG1628 protein_coding CG8478-S2-modencode_R2_peak_1678 chr3L 18056313 18056748 + 33 NA intron (FBgn0000568, intron 1 of 7) protein_coding-intron (FBgn0000568, intron 1 of 7) 1266 FBgn0000568 FBgn0000568 FBtr0075151 Eip75B protein_coding CG8478-S2-modencode_R2_peak_1959 chr3R 5918843 5919867 + 33 NA promoter-TSS (FBgn0263413) ncRNA-promoter-TSS (FBgn0263413) -129 FBgn0263413 FBgn0263413 FBtr0309196 CR43459 ncRNA CG8478-S2-modencode_R2_peak_2883 chrX 7590336 7591521 + 33 NA promoter-TSS (FBgn0029504) protein_coding-promoter-TSS (FBgn0029504) -1977 FBgn0029504 FBgn0029504 FBtr0071079 CHES-1-like protein_coding CG8478-S2-modencode_R2_peak_1694 chr3L 18784245 18784828 + 33 NA intron (FBgn0001078, intron 2 of 9) protein_coding-intron (FBgn0001078, intron 2 of 9) -25692 FBgn0001078 FBgn0001078 FBtr0075087 ftz-f1 protein_coding CG8478-S2-modencode_R2_peak_2679 chrX 1988176 1988680 + 33 NA TTS (FBgn0040395) protein_coding-TTS (FBgn0040395) 161 FBgn0000382 FBgn0000382 FBtr0070380 csw protein_coding CG8478-S2-modencode_R2_peak_405 chr2L 20174954 20175306 + 33 NA Intergenic Intergenic -40207 FBgn0032853 FBgn0032853 FBtr0081378 CG10651 protein_coding CG8478-S2-modencode_R2_peak_2488 chr3R 26133233 26134671 + 33 NA intron (FBgn0010113, intron 1 of 5) protein_coding-intron (FBgn0010113, intron 1 of 5) -1593 FBgn0085329 FBgn0085329 FBtr0305269 CG34300 protein_coding CG8478-S2-modencode_R2_peak_1838 chr3R 2738542 2738973 + 33 NA intron (FBgn0260642, intron 2 of 6) protein_coding-intron (FBgn0260642, intron 1 of 4) -8353 FBgn0262897 FBgn0262897 FBtr0306313 CG43252 protein_coding CG8478-S2-modencode_R2_peak_1813 chr3R 2158695 2159455 + 33 NA Intergenic Intergenic -2011 FBgn0037429 FBgn0037429 FBtr0301493 Osi19 protein_coding CG8478-S2-modencode_R2_peak_2951 chrX 9396198 9396873 + 33 NA TTS (FBgn0263508) ncRNA-TTS (FBgn0263508) 3998 FBgn0263508 FBgn0263508 FBtr0309529 CR43497 ncRNA CG8478-S2-modencode_R2_peak_1583 chr3L 15524718 15525612 + 33 NA promoter-TSS (FBgn0262893) protein_coding-promoter-TSS (FBgn0262893) -592 FBgn0262893 FBgn0262893 FBtr0306309 CG43248 protein_coding CG8478-S2-modencode_R2_peak_381 chr2L 18936221 18936475 + 33 NA intron (FBgn0032723, intron 6 of 10) protein_coding-intron (FBgn0032723, intron 6 of 10) 7600 FBgn0032723 FBgn0032723 FBtr0081193 ssp3 protein_coding CG8478-S2-modencode_R2_peak_2740 chrX 3301510 3302330 + 33 NA intron (FBgn0029657, intron 3 of 4) protein_coding-intron (FBgn0029657, intron 2 of 3) 19636 FBgn0052493 FBgn0052493 FBtr0070533 tRNA:CR32493 tRNA CG8478-S2-modencode_R2_peak_2925 chrX 9046342 9046577 + 32 NA TTS (FBgn0030093) protein_coding-TTS (FBgn0030093) 3117 FBgn0030093 FBgn0030093 FBtr0071300 dalao protein_coding CG8478-S2-modencode_R2_peak_2399 chr3R 21962973 21963248 + 32 NA TTS (FBgn0039415) protein_coding-TTS (FBgn0039415) 4234 FBgn0039415 FBgn0039415 FBtr0084987 CG6142 protein_coding CG8478-S2-modencode_R2_peak_1614 chr3L 16652990 16653438 + 32 NA intron (FBgn0260960, intron 1 of 4) protein_coding-intron (FBgn0260960, intron 1 of 4) 1501 FBgn0260960 FBgn0260960 FBtr0075356 Baldspot protein_coding CG8478-S2-modencode_R2_peak_1802 chr3R 976226 976454 + 32 NA promoter-TSS (FBgn0037295) protein_coding-promoter-TSS (FBgn0037295) -8994 FBgn0037294 FBgn0037294 FBtr0078773 CG12590 protein_coding CG8478-S2-modencode_R2_peak_2416 chr3R 22780072 22780264 + 32 NA intron (FBgn0039464, intron 2 of 5) protein_coding-intron (FBgn0039464, intron 2 of 5) -1193 FBgn0039464 FBgn0039464 FBtr0085085 CG6330 protein_coding CG8478-S2-modencode_R2_peak_317 chr2L 14011673 14011841 + 32 NA Intergenic Intergenic -1121 FBgn0028909 FBgn0028909 FBtr0080609 tRNA:Q:34E tRNA CG8478-S2-modencode_R2_peak_1841 chr3R 2862864 2863493 + 32 NA Intergenic Intergenic -14879 FBgn0024289 FBgn0024289 FBtr0081627 Sodh-1 protein_coding CG8478-S2-modencode_R2_peak_34 chr2L 522656 522839 + 32 NA promoter-TSS (FBgn0003963) protein_coding-promoter-TSS (FBgn0003963) 19833 FBgn0010602 FBgn0010602 FBtr0310029 lwr protein_coding CG8478-S2-modencode_R2_peak_2953 chrX 9444749 9445068 + 32 NA TTS (FBgn0028327) protein_coding-TTS (FBgn0028327) 354 FBgn0052700 FBgn0052700 FBtr0071374 CG32700 protein_coding CG8478-S2-modencode_R2_peak_1732 chr3L 20341921 20342496 + 32 NA exon (FBgn0036974, exon 2 of 8) protein_coding-exon (FBgn0036974, exon 2 of 8) 753 FBgn0036974 FBgn0036974 FBtr0331817 eRF1 protein_coding CG8478-S2-modencode_R2_peak_1837 chr3R 2733930 2734067 + 32 NA exon (FBgn0260642, exon 5 of 5) protein_coding-exon (FBgn0260642, exon 5 of 5) -3594 FBgn0262897 FBgn0262897 FBtr0306313 CG43252 protein_coding CG8478-S2-modencode_R2_peak_1286 chr3L 3246127 3247759 + 32 NA Intergenic Intergenic -1072 FBgn0263246 FBgn0263246 FBtr0308062 CG43389 protein_coding CG8478-S2-modencode_R2_peak_2413 chr3R 22707123 22707373 + 32 NA promoter-TSS (FBgn0004359) protein_coding-promoter-TSS (FBgn0004359) -208 FBgn0004359 FBgn0004359 FBtr0085065 T48 protein_coding CG8478-S2-modencode_R2_peak_2017 chr3R 8542265 8544605 + 32 NA intron (FBgn0002719, intron 1 of 2) protein_coding-intron (FBgn0002719, intron 2 of 3) 2079 FBgn0002719 FBgn0002719 FBtr0330025 Men protein_coding CG8478-S2-modencode_R2_peak_3213 chrX 16480149 16480965 + 32 NA exon (FBgn0030758, exon 1 of 2) protein_coding-exon (FBgn0030758, exon 1 of 2) -1349 FBgn0030759 FBgn0030759 FBtr0074282 CG13014 protein_coding CG8478-S2-modencode_R2_peak_1939 chr3R 5550773 5551564 + 32 NA TTS (FBgn0262477) protein_coding-TTS (FBgn0262477) 165 FBgn0002431 FBgn0002431 FBtr0082090 hyd protein_coding CG8478-S2-modencode_R2_peak_1188 chr2R 21003065 21003305 + 32 NA Intergenic Intergenic -13770 FBgn0050430 FBgn0050430 FBtr0072448 CG30430 protein_coding CG8478-S2-modencode_R2_peak_2581 chrM 1068 1164 + 32 NA NA NA NA NA CG8478-S2-modencode_R2_peak_2059 chr3R 10563696 10563877 + 32 NA intron (FBgn0011217, intron 1 of 4) protein_coding-intron (FBgn0011217, intron 2 of 5) 2700 FBgn0011217 FBgn0011217 FBtr0310554 eff protein_coding CG8478-S2-modencode_R2_peak_518 chr2R 3375962 3377320 + 32 NA promoter-TSS (FBgn0259745) protein_coding-promoter-TSS (FBgn0259745) -450 FBgn0259745 FBgn0259745 FBtr0300081 wech protein_coding CG8478-S2-modencode_R2_peak_256 chr2L 11045082 11045752 + 32 NA intron (FBgn0032330, intron 2 of 6) protein_coding-intron (FBgn0032330, intron 2 of 6) 10568 FBgn0040967 FBgn0040967 FBtr0080160 CG18666 protein_coding CG8478-S2-modencode_R2_peak_2680 chrX 2034512 2035044 + 32 NA promoter-TSS (FBgn0023507) protein_coding-promoter-TSS (FBgn0023507) -1942 FBgn0023507 FBgn0023507 FBtr0070383 CG3835 protein_coding CG8478-S2-modencode_R2_peak_942 chr2R 13756715 13757159 + 32 NA intron (FBgn0034282, intron 2 of 6) protein_coding-intron (FBgn0034282, intron 3 of 6) 2578 FBgn0034282 FBgn0034282 FBtr0113091 Mapmodulin protein_coding CG8478-S2-modencode_R2_peak_2365 chr3R 21340972 21342072 + 32 NA promoter-TSS (FBgn0011666) protein_coding-promoter-TSS (FBgn0011666) 9525 FBgn0039343 FBgn0039343 FBtr0084880 CG5111 protein_coding CG8478-S2-modencode_R2_peak_941 chr2R 13709609 13710252 + 32 NA intron (FBgn0259211, intron 3 of 13) protein_coding-intron (FBgn0259211, intron 3 of 12) -1140 FBgn0259211 FBgn0259211 FBtr0300540 grh protein_coding CG8478-S2-modencode_R2_peak_770 chr2R 8843337 8843628 + 32 NA TTS (FBgn0033787) protein_coding-TTS (FBgn0033787) 2421 FBgn0033787 FBgn0033787 FBtr0087792 CG13321 protein_coding CG8478-S2-modencode_R2_peak_210 chr2L 8692613 8693193 + 31 NA intron (FBgn0004914, intron 2 of 7) protein_coding-intron (FBgn0004914, intron 2 of 7) 6397 FBgn0004914 FBgn0004914 FBtr0079749 Hnf4 protein_coding CG8478-S2-modencode_R2_peak_1924 chr3R 5253829 5254731 + 31 NA promoter-TSS (FBgn0261552) protein_coding-promoter-TSS (FBgn0261552) 10616 FBgn0261552 FBgn0261552 FBtr0302691 ps protein_coding CG8478-S2-modencode_R2_peak_912 chr2R 12914632 12916052 + 31 NA intron (FBgn0023172, intron 1 of 23) protein_coding-intron (FBgn0023172, intron 1 of 22) 596 FBgn0023172 FBgn0023172 FBtr0305083 RhoGEF2 protein_coding CG8478-S2-modencode_R2_peak_481 chr2R 2057040 2057111 + 31 NA promoter-TSS (FBgn0011956) tRNA-promoter-TSS (FBgn0011956) -37 FBgn0011956 FBgn0011956 FBtr0085985 tRNA:R2:42Ab tRNA CG8478-S2-modencode_R2_peak_107 chr2L 4811691 4812134 + 31 NA Intergenic Intergenic -1097 FBgn0031630 FBgn0031630 FBtr0077383 CG15629 protein_coding CG8478-S2-modencode_R2_peak_1508 chr3L 11112515 11113561 + 31 NA promoter-TSS (FBgn0036135) protein_coding-promoter-TSS (FBgn0036135) 837 FBgn0036134 FBgn0036134 FBtr0300785 fd68A protein_coding CG8478-S2-modencode_R2_peak_1299 chr3L 3400861 3401049 + 31 NA TTS (FBgn0014388) protein_coding-TTS (FBgn0014388) 11232 FBgn0262260 FBgn0262260 FBtr0304360 mir-2282 pre_miRNA CG8478-S2-modencode_R2_peak_2564 chr4 529219 529356 + 31 NA intron (FBgn0004607, intron 2 of 12) protein_coding-intron (FBgn0004607, intron 2 of 13) 6851 FBgn0004607 FBgn0004607 FBtr0332913 zfh2 protein_coding CG8478-S2-modencode_R2_peak_2707 chrX 2342033 2342357 + 31 NA promoter-TSS (FBgn0040388) protein_coding-promoter-TSS (FBgn0040388) 393 FBgn0004050 FBgn0004050 FBtr0100380 z protein_coding CG8478-S2-modencode_R2_peak_3041 chrX 10679666 10680416 + 31 NA intron (FBgn0003360, intron 1 of 4) protein_coding-intron (FBgn0003360, intron 1 of 3) -1550 FBgn0003360 FBgn0003360 FBtr0073423 sesB protein_coding CG8478-S2-modencode_R2_peak_2095 chr3R 11830435 11830907 + 31 NA TTS (FBgn0003507) protein_coding-TTS (FBgn0003507) 3124 FBgn0262028 FBgn0262028 FBtr0303861 CR42839 ncRNA CG8478-S2-modencode_R2_peak_1780 chr3LHet 206924 207441 + 31 NA NA NA NA NA CG8478-S2-modencode_R2_peak_822 chr2R 10061299 10063541 + 31 NA intron (FBgn0000289, intron 1 of 11) protein_coding-intron (FBgn0000289, intron 1 of 9) 1245 FBgn0000289 FBgn0000289 FBtr0112795 cg protein_coding CG8478-S2-modencode_R2_peak_155 chr2L 7033099 7033477 + 31 NA promoter-TSS (FBgn0031882) protein_coding-promoter-TSS (FBgn0031882) 575 FBgn0031883 FBgn0031883 FBtr0089636 CG11266 protein_coding CG8478-S2-modencode_R2_peak_551 chr2R 3901867 3902068 + 31 NA promoter-TSS (FBgn0033250) protein_coding-promoter-TSS (FBgn0033250) -708 FBgn0033250 FBgn0033250 FBtr0304750 CG14762 protein_coding CG8478-S2-modencode_R2_peak_468 chr2R 2019420 2019776 + 31 NA promoter-TSS (FBgn0000546) protein_coding-promoter-TSS (FBgn0000546) -252 FBgn0000546 FBgn0000546 FBtr0086011 EcR protein_coding CG8478-S2-modencode_R2_peak_998 chr2R 14556233 14556604 + 31 NA intron (FBgn0023214, intron 1 of 1) protein_coding-intron (FBgn0023214, intron 1 of 1) -3168 FBgn0053136 FBgn0053136 FBtr0086653 CG33136 protein_coding CG8478-S2-modencode_R2_peak_3242 chrX 18265193 18265807 + 31 NA promoter-TSS (FBgn0014467) protein_coding-promoter-TSS (FBgn0014467) -1349 FBgn0263769 FBgn0263769 FBtr0310488 CR43686 ncRNA CG8478-S2-modencode_R2_peak_3112 chrX 12633085 12633459 + 31 NA intron (FBgn0263865, intron 2 of 10) protein_coding-intron (FBgn0263865, intron 1 of 9) 3205 FBgn0263865 FBgn0263865 FBtr0333766 Smr protein_coding CG8478-S2-modencode_R2_peak_51 chr2L 1665984 1669664 + 31 NA promoter-TSS (FBgn0086758) protein_coding-promoter-TSS (FBgn0086758) 16566 FBgn0086758 FBgn0086758 FBtr0077878 chinmo protein_coding CG8478-S2-modencode_R2_peak_1626 chr3L 17002985 17003662 + 31 NA intron (FBgn0036684, intron 1 of 6) protein_coding-intron (FBgn0036684, intron 1 of 6) 5828 FBgn0036685 FBgn0036685 FBtr0332121 CG6664 protein_coding CG8478-S2-modencode_R2_peak_176 chr2L 8030815 8031880 + 31 NA TTS (FBgn0031977) protein_coding-TTS (FBgn0031977) 626 FBgn0044323 FBgn0044323 FBtr0079539 Cka protein_coding CG8478-S2-modencode_R2_peak_1549 chr3L 13995295 13997595 + 31 NA exon (FBgn0036398, exon 2 of 8) protein_coding-exon (FBgn0036398, exon 2 of 8) 1218 FBgn0036398 FBgn0036398 FBtr0333050 CG9007 protein_coding CG8478-S2-modencode_R2_peak_2990 chrX 9903957 9904252 + 30 NA promoter-TSS (FBgn0030170) protein_coding-promoter-TSS (FBgn0030170) -432 FBgn0030170 FBgn0030170 FBtr0112971 CG2990 protein_coding CG8478-S2-modencode_R2_peak_1814 chr3R 2160603 2161377 + 30 NA promoter-TSS (FBgn0037429) protein_coding-promoter-TSS (FBgn0037429) -96 FBgn0037429 FBgn0037429 FBtr0301493 Osi19 protein_coding CG8478-S2-modencode_R2_peak_2781 chrX 3672094 3675199 + 30 NA promoter-TSS (FBgn0086899) protein_coding-promoter-TSS (FBgn0086899) 2157 FBgn0263532 FBgn0263532 FBtr0309622 mir-4962 pre_miRNA CG8478-S2-modencode_R2_peak_1050 chr2R 15343650 15344979 + 30 NA exon (FBgn0260934, exon 1 of 16) protein_coding-exon (FBgn0260934, exon 1 of 16) 614 FBgn0002716 FBgn0002716 FBtr0086461 mei-W68 protein_coding CG8478-S2-modencode_R2_peak_3105 chrX 12621721 12622390 + 30 NA intron (FBgn0264678, intron 1 of 1) protein_coding-intron (FBgn0263865, intron 2 of 9) -9562 FBgn0264678 FBgn0264678 FBtr0333775 CR43963 ncRNA CG8478-S2-modencode_R2_peak_2923 chrX 8936390 8936861 + 30 NA promoter-TSS (FBgn0259734) protein_coding-promoter-TSS (FBgn0259734) -52 FBgn0259734 FBgn0259734 FBtr0300000 CG42388 protein_coding CG8478-S2-modencode_R2_peak_2013 chr3R 8268460 8269460 + 30 NA promoter-TSS (FBgn0086687) protein_coding-promoter-TSS (FBgn0086687) -803 FBgn0086687 FBgn0086687 FBtr0082630 desat1 protein_coding CG8478-S2-modencode_R2_peak_616 chr2R 6011358 6011755 + 30 NA promoter-TSS (FBgn0050011) protein_coding-promoter-TSS (FBgn0050011) -237 FBgn0050011 FBgn0050011 FBtr0300943 gem protein_coding CG8478-S2-modencode_R2_peak_1736 chr3L 20509874 20510905 + 30 NA promoter-TSS (FBgn0037007) protein_coding-promoter-TSS (FBgn0037007) 15 FBgn0037007 FBgn0037007 FBtr0078217 CG5059 protein_coding CG8478-S2-modencode_R2_peak_9 chr2L 182693 183423 + 30 NA exon (FBgn0016977, exon 1 of 10) protein_coding-intron (FBgn0016977, intron 1 of 10) 238 FBgn0016977 FBgn0016977 FBtr0332337 spen protein_coding CG8478-S2-modencode_R2_peak_815 chr2R 9890939 9891341 + 30 NA intron (FBgn0002643, intron 2 of 6) protein_coding-intron (FBgn0002643, intron 2 of 6) 2346 FBgn0263539 FBgn0263539 FBtr0309641 mir-4978 pre_miRNA CG8478-S2-modencode_R2_peak_3311 chrX 21245009 21245220 + 30 NA promoter-TSS (FBgn0003423) protein_coding-promoter-TSS (FBgn0003423) -1336 FBgn0003423 FBgn0003423 FBtr0077207 slgA protein_coding CG8478-S2-modencode_R2_peak_2238 chr3R 17010602 17010711 + 30 NA intron (FBgn0264357, intron 1 of 8) protein_coding-intron (FBgn0264357, intron 6 of 12) -16729 FBgn0260004 FBgn0260004 FBtr0084027 Snmp1 protein_coding CG8478-S2-modencode_R2_peak_378 chr2L 18796007 18796081 + 30 NA Intergenic Intergenic 9303 FBgn0264362 FBgn0264362 FBtr0332209 CG43814 protein_coding CG8478-S2-modencode_R2_peak_1500 chr3L 10849220 10849423 + 30 NA Intergenic Intergenic -2183 FBgn0026160 FBgn0026160 FBtr0076268 tna protein_coding CG8478-S2-modencode_R2_peak_983 chr2R 14416202 14416533 + 30 NA intron (FBgn0034356, intron 1 of 1) protein_coding-intron (FBgn0034356, intron 1 of 1) -3546 FBgn0034356 FBgn0034356 FBtr0113093 CG10924 protein_coding CG8478-S2-modencode_R2_peak_2772 chrX 3646915 3646993 + 30 NA intron (FBgn0086899, intron 2 of 9) protein_coding-intron (FBgn0086899, intron 2 of 9) -19719 FBgn0086899 FBgn0086899 FBtr0070596 tlk protein_coding CG8478-S2-modencode_R2_peak_2798 chrX 4317928 4318283 + 30 NA intron (FBgn0000179, intron 1 of 7) protein_coding-intron (FBgn0000179, intron 1 of 7) 11216 FBgn0000179 FBgn0000179 FBtr0300609 bi protein_coding CG8478-S2-modencode_R2_peak_429 chr2L 21628706 21629779 + 30 NA intron (FBgn0022893, intron 1 of 2) protein_coding-intron (FBgn0022893, intron 1 of 2) 690 FBgn0022893 FBgn0022893 FBtr0085920 Df31 protein_coding CG8478-S2-modencode_R2_peak_575 chr2R 4540661 4540784 + 30 NA intron (FBgn0003892, intron 1 of 5) protein_coding-intron (FBgn0003892, intron 1 of 5) 3582 FBgn0003892 FBgn0003892 FBtr0089427 ptc protein_coding CG8478-S2-modencode_R2_peak_1957 chr3R 5914664 5915407 + 30 NA Intergenic Intergenic -1868 FBgn0262378 FBgn0262378 FBtr0304218 mir-317 pre_miRNA CG8478-S2-modencode_R2_peak_3044 chrX 10696959 10697318 + 30 NA intron (FBgn0262735, intron 1 of 5) protein_coding-intron (FBgn0262735, intron 2 of 5) 10988 FBgn0262735 FBgn0262735 FBtr0073419 Imp protein_coding CG8478-S2-modencode_R2_peak_1602 chr3L 16370740 16371469 + 30 NA TTS (FBgn0036622) protein_coding-TTS (FBgn0036622) 646 FBgn0036621 FBgn0036621 FBtr0331173 roq protein_coding CG8478-S2-modencode_R2_peak_2764 chrX 3634643 3635415 + 30 NA intron (FBgn0086899, intron 1 of 7) protein_coding-intron (FBgn0086899, intron 1 of 7) -21364 FBgn0015286 FBgn0015286 FBtr0070584 Rala protein_coding CG8478-S2-modencode_R2_peak_1946 chr3R 5902461 5902652 + 29 NA Intergenic Intergenic -1461 FBgn0037786 FBgn0037786 FBtr0309853 CG5361 protein_coding CG8478-S2-modencode_R2_peak_2752 chrX 3571152 3572733 + 29 NA intron (FBgn0023215, intron 1 of 8) protein_coding-intron (FBgn0023215, intron 1 of 8) -6407 FBgn0023216 FBgn0023216 FBtr0307279 Parg protein_coding CG8478-S2-modencode_R2_peak_825 chr2R 10209988 10210226 + 29 NA intron (FBgn0085408, intron 2 of 9) protein_coding-intron (FBgn0085408, intron 2 of 9) -9793 FBgn0085408 FBgn0085408 FBtr0112616 Shroom protein_coding CG8478-S2-modencode_R2_peak_2229 chr3R 16786930 16787264 + 29 NA intron (FBgn0002921, intron 3 of 10) protein_coding-intron (FBgn0002921, intron 2 of 9) 12661 FBgn0002921 FBgn0002921 FBtr0089516 Atpalpha protein_coding CG8478-S2-modencode_R2_peak_1559 chr3L 14194214 14194402 + 29 NA intron (FBgn0013718, intron 4 of 10) protein_coding-intron (FBgn0013718, intron 4 of 9) -2115 FBgn0052141 FBgn0052141 FBtr0075735 CG32141 protein_coding CG8478-S2-modencode_R2_peak_3240 chrX 18259992 18260807 + 29 NA promoter-TSS (FBgn0014467) protein_coding-promoter-TSS (FBgn0014467) -334 FBgn0014467 FBgn0014467 FBtr0300205 CrebB-17A protein_coding CG8478-S2-modencode_R2_peak_94 chr2L 3662256 3662602 + 29 NA promoter-TSS (FBgn0085369) protein_coding-promoter-TSS (FBgn0085369) -316 FBgn0085369 FBgn0085369 FBtr0302391 CG34340 protein_coding CG8478-S2-modencode_R2_peak_1947 chr3R 5904876 5905452 + 29 NA Intergenic Intergenic -4069 FBgn0037786 FBgn0037786 FBtr0309853 CG5361 protein_coding CG8478-S2-modencode_R2_peak_567 chr2R 4214487 4214989 + 29 NA promoter-TSS (FBgn0261588) protein_coding-promoter-TSS (FBgn0261588) -267 FBgn0261588 FBgn0261588 FBtr0302918 pdm3 protein_coding CG8478-S2-modencode_R2_peak_2905 chrX 8035901 8036251 + 29 NA TTS (FBgn0030006) protein_coding-TTS (FBgn0030006) 225 FBgn0025800 FBgn0025800 FBtr0071192 Smox protein_coding CG8478-S2-modencode_R2_peak_13 chr2L 248207 248455 + 29 NA intron (FBgn0086902, intron 1 of 16) protein_coding-intron (FBgn0086902, intron 1 of 17) 2492 FBgn0086902 FBgn0086902 FBtr0078145 kis protein_coding CG8478-S2-modencode_R2_peak_3225 chrX 17054651 17054725 + 29 NA exon (FBgn0000163, exon 1 of 7) protein_coding-exon (FBgn0000163, exon 1 of 7) -1349 FBgn0028974 FBgn0028974 FBtr0074404 xmas-2 protein_coding CG8478-S2-modencode_R2_peak_1006 chr2R 14687928 14688374 + 29 NA intron (FBgn0010651, intron 1 of 3) protein_coding-intron (FBgn0010651, intron 2 of 4) 1753 FBgn0010651 FBgn0010651 FBtr0086635 l(2)08717 protein_coding CG8478-S2-modencode_R2_peak_1778 chr3L 23689151 23689836 + 29 NA Intergenic Intergenic -18898 FBgn0039977 FBgn0039977 FBtr0333911 CG17454 protein_coding CG8478-S2-modencode_R2_peak_1255 chr3L 2192160 2192745 + 29 NA promoter-TSS (FBgn0026593) protein_coding-promoter-TSS (FBgn0026593) -231 FBgn0026593 FBgn0026593 FBtr0308230 CG5707 protein_coding CG8478-S2-modencode_R2_peak_1679 chr3L 18081103 18081408 + 29 NA promoter-TSS (FBgn0085282) protein_coding-promoter-TSS (FBgn0085282) -835 FBgn0085282 FBgn0085282 FBtr0112447 CG34253 protein_coding CG8478-S2-modencode_R2_peak_2890 chrX 7603822 7604284 + 29 NA promoter-TSS (FBgn0029504) protein_coding-promoter-TSS (FBgn0029504) 2245 FBgn0262979 FBgn0262979 FBtr0306815 CG43287 protein_coding CG8478-S2-modencode_R2_peak_1756 chr3L 21763490 21763691 + 29 NA promoter-TSS (FBgn0037130) protein_coding-promoter-TSS (FBgn0037130) 44 FBgn0037130 FBgn0037130 FBtr0333893 Syn1 protein_coding CG8478-S2-modencode_R2_peak_2445 chr3R 25080962 25081464 + 29 NA exon (FBgn0003525, exon 1 of 2) protein_coding-exon (FBgn0003525, exon 1 of 2) 289 FBgn0003525 FBgn0003525 FBtr0085397 stg protein_coding CG8478-S2-modencode_R2_peak_1872 chr3R 4159500 4160327 + 29 NA promoter-TSS (FBgn0003129) protein_coding-promoter-TSS (FBgn0003129) -399 FBgn0003129 FBgn0003129 FBtr0111026 Poxm protein_coding CG8478-S2-modencode_R2_peak_2885 chrX 7597515 7598102 + 29 NA intron (FBgn0029504, intron 1 of 5) protein_coding-intron (FBgn0029504, intron 1 of 5) -4000 FBgn0262979 FBgn0262979 FBtr0306815 CG43287 protein_coding CG8478-S2-modencode_R2_peak_2933 chrX 9237580 9239048 + 29 NA intron (FBgn0085478, intron 2 of 10) protein_coding-intron (FBgn0085478, intron 2 of 10) 11946 FBgn0085478 FBgn0085478 FBtr0112755 CG34449 protein_coding CG8478-S2-modencode_R2_peak_244 chr2L 9698193 9699205 + 29 NA intron (FBgn0000273, intron 1 of 2) protein_coding-intron (FBgn0000273, intron 1 of 2) 594 FBgn0000273 FBgn0000273 FBtr0079852 Pka-C1 protein_coding CG8478-S2-modencode_R2_peak_2718 chrX 3056016 3056614 + 29 NA intron (FBgn0004647, intron 5 of 8) protein_coding-intron (FBgn0004647, intron 5 of 8) 10858 FBgn0028746 FBgn0028746 FBtr0070543 CG18508 protein_coding CG8478-S2-modencode_R2_peak_497 chr2R 2519758 2520430 + 29 NA promoter-TSS (FBgn0262736) protein_coding-promoter-TSS (FBgn0262736) -208 FBgn0262736 FBgn0262736 FBtr0086153 Vha16-1 protein_coding CG8478-S2-modencode_R2_peak_896 chr2R 12471412 12471644 + 29 NA intron (FBgn0016131, intron 3 of 6) protein_coding-intron (FBgn0016131, intron 3 of 6) -2071 FBgn0003274 FBgn0003274 FBtr0087105 RpLP2 protein_coding CG8478-S2-modencode_R2_peak_2723 chrX 3188710 3189129 + 29 NA promoter-TSS (FBgn0000479) protein_coding-promoter-TSS (FBgn0000479) 21516 FBgn0029656 FBgn0029656 FBtr0070536 CG10793 protein_coding CG8478-S2-modencode_R2_peak_890 chr2R 12157974 12158585 + 29 NA intron (FBgn0001308, intron 1 of 3) protein_coding-intron (FBgn0001308, intron 1 of 3) 1204 FBgn0001308 FBgn0001308 FBtr0087184 Khc protein_coding CG8478-S2-modencode_R2_peak_2186 chr3R 14306452 14307427 + 28 NA promoter-TSS (FBgn0004652) protein_coding-promoter-TSS (FBgn0004652) 64369 FBgn0004652 FBgn0004652 FBtr0083647 fru protein_coding CG8478-S2-modencode_R2_peak_1290 chr3L 3252107 3252295 + 28 NA TTS (FBgn0263617) ncRNA-TTS (FBgn0263617) 1163 FBgn0262368 FBgn0262368 FBtr0304175 mir-282 pre_miRNA CG8478-S2-modencode_R2_peak_2664 chrX 1517016 1517766 + 28 NA intron (FBgn0000210, intron 1 of 7) protein_coding-intron (FBgn0000210, intron 1 of 7) -5203 FBgn0025390 FBgn0025390 FBtr0070284 Mur2B protein_coding CG8478-S2-modencode_R2_peak_1009 chr2R 14689995 14690696 + 28 NA promoter-TSS (FBgn0010651) protein_coding-promoter-TSS (FBgn0010651) -441 FBgn0010651 FBgn0010651 FBtr0086635 l(2)08717 protein_coding CG8478-S2-modencode_R2_peak_1489 chr3L 10731321 10731877 + 28 NA Intergenic Intergenic -33493 FBgn0262890 FBgn0262890 FBtr0306304 CG43245 protein_coding CG8478-S2-modencode_R2_peak_1321 chr3L 3461600 3461789 + 28 NA promoter-TSS (FBgn0026259) protein_coding-promoter-TSS (FBgn0026259) 379 FBgn0041164 FBgn0041164 FBtr0309840 armi protein_coding CG8478-S2-modencode_R2_peak_2377 chr3R 21831656 21832507 + 28 NA promoter-TSS (FBgn0002733) protein_coding-promoter-TSS (FBgn0002733) -336 FBgn0002733 FBgn0002733 FBtr0084982 HLHmbeta protein_coding CG8478-S2-modencode_R2_peak_3124 chrX 12799416 12799536 + 28 NA intron (FBgn0030432, intron 1 of 1) protein_coding-intron (FBgn0030432, intron 1 of 1) 592 FBgn0030432 FBgn0030432 FBtr0073694 CG4404 protein_coding CG8478-S2-modencode_R2_peak_1135 chr2R 18441614 18442052 + 28 NA intron (FBgn0003175, intron 3 of 14) protein_coding-intron (FBgn0003175, intron 3 of 13) 4234 FBgn0034736 FBgn0034736 FBtr0071835 CG6018 protein_coding CG8478-S2-modencode_R2_peak_2460 chr3R 25563477 25563668 + 28 NA promoter-TSS (FBgn0039690) protein_coding-promoter-TSS (FBgn0039690) 916 FBgn0039689 FBgn0039689 FBtr0085473 CG7598 protein_coding CG8478-S2-modencode_R2_peak_2281 chr3R 19047128 19047915 + 28 NA exon (FBgn0262975, exon 1 of 11) protein_coding-exon (FBgn0262975, exon 1 of 11) 162 FBgn0262975 FBgn0262975 FBtr0308227 cnc protein_coding CG8478-S2-modencode_R2_peak_1491 chr3L 10733161 10733650 + 28 NA Intergenic Intergenic -31687 FBgn0262890 FBgn0262890 FBtr0306304 CG43245 protein_coding CG8478-S2-modencode_R2_peak_2057 chr3R 10547866 10548632 + 28 NA intron (FBgn0262127, intron 1 of 8) protein_coding-intron (FBgn0262127, intron 1 of 8) 1729 FBgn0262127 FBgn0262127 FBtr0100008 kibra protein_coding CG8478-S2-modencode_R2_peak_1737 chr3L 20614675 20615161 + 28 NA Intergenic Intergenic -1159 FBgn0001323 FBgn0001323 FBtr0078212 knrl protein_coding CG8478-S2-modencode_R2_peak_1149 chr2R 19524044 19524256 + 28 NA intron (FBgn0004795, intron 1 of 11) protein_coding-intron (FBgn0004795, intron 1 of 11) 4015 FBgn0004795 FBgn0004795 FBtr0072073 retn protein_coding CG8478-S2-modencode_R2_peak_3102 chrX 12617777 12617996 + 28 NA intron (FBgn0264678, intron 1 of 1) protein_coding-intron (FBgn0263865, intron 2 of 9) -5393 FBgn0264678 FBgn0264678 FBtr0333775 CR43963 ncRNA CG8478-S2-modencode_R2_peak_1007 chr2R 14688678 14688754 + 28 NA intron (FBgn0010651, intron 1 of 3) protein_coding-intron (FBgn0010651, intron 2 of 4) 1188 FBgn0010651 FBgn0010651 FBtr0086635 l(2)08717 protein_coding CG8478-S2-modencode_R2_peak_325 chr2L 14706291 14706407 + 28 NA Intergenic Intergenic -6316 FBgn0028855 FBgn0028855 FBtr0302946 CG15282 protein_coding CG8478-S2-modencode_R2_peak_2874 chrX 7498467 7499126 + 28 NA Intergenic Intergenic -4385 FBgn0004198 FBgn0004198 FBtr0071069 ct protein_coding CG8478-S2-modencode_R2_peak_720 chr2R 7176684 7177295 + 28 NA TTS (FBgn0033610) protein_coding-TTS (FBgn0033610) 264 FBgn0033609 FBgn0033609 FBtr0088178 fbl6 protein_coding CG8478-S2-modencode_R2_peak_645 chr2R 6445623 6445698 + 28 NA exon (FBgn0263102, exon 1 of 10) protein_coding-exon (FBgn0263102, exon 1 of 10) 267 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding CG8478-S2-modencode_R2_peak_241 chr2L 9567459 9567971 + 28 NA promoter-TSS (FBgn0032129) protein_coding-promoter-TSS (FBgn0032129) -2602 FBgn0032130 FBgn0032130 FBtr0079835 CG3838 protein_coding CG8478-S2-modencode_R2_peak_897 chr2R 12481664 12482438 + 28 NA TTS (FBgn0034143) protein_coding-TTS (FBgn0034143) 167 FBgn0034142 FBgn0034142 FBtr0087120 CG8306 protein_coding CG8478-S2-modencode_R2_peak_1413 chr3L 8056507 8057555 + 28 NA promoter-TSS (FBgn0262579) protein_coding-promoter-TSS (FBgn0262579) 1794 FBgn0052361 FBgn0052361 FBtr0076741 tRNA:CR32361 tRNA CG8478-S2-modencode_R2_peak_3243 chrX 18268450 18268954 + 28 NA TTS (FBgn0014467) protein_coding-TTS (FBgn0014467) -4551 FBgn0263769 FBgn0263769 FBtr0310488 CR43686 ncRNA CG8478-S2-modencode_R2_peak_1722 chr3L 19922144 19922512 + 28 NA promoter-TSS (FBgn0036920) protein_coding-promoter-TSS (FBgn0036920) 485 FBgn0036921 FBgn0036921 FBtr0331800 RhoGDI protein_coding CG8478-S2-modencode_R2_peak_152 chr2L 6833585 6834028 + 27 NA intron (FBgn0051632, intron 4 of 4) protein_coding-intron (FBgn0051632, intron 4 of 4) 11489 FBgn0051632 FBgn0051632 FBtr0079341 sens-2 protein_coding CG8478-S2-modencode_R2_peak_2601 chrU 5507284 5507500 + 27 NA NA NA NA NA CG8478-S2-modencode_R2_peak_3306 chrX 21221559 21222538 + 27 NA promoter-TSS (FBgn0003464) protein_coding-promoter-TSS (FBgn0003464) 691 FBgn0003464 FBgn0003464 FBtr0089676 sol protein_coding CG8478-S2-modencode_R2_peak_991 chr2R 14526286 14526496 + 27 NA promoter-TSS (FBgn0050227) tRNA-promoter-TSS (FBgn0050227) -671 FBgn0050227 FBgn0050227 FBtr0086603 tRNA:CR30227 tRNA CG8478-S2-modencode_R2_peak_1225 chr3L 646035 646184 + 27 NA Intergenic Intergenic -2665 FBgn0035147 FBgn0035147 FBtr0306917 Gale protein_coding CG8478-S2-modencode_R2_peak_771 chr2R 8846269 8846516 + 27 NA Intergenic Intergenic 5331 FBgn0033787 FBgn0033787 FBtr0087792 CG13321 protein_coding CG8478-S2-modencode_R2_peak_487 chr2R 2123608 2123751 + 27 NA intron (FBgn0263144, intron 3 of 6) protein_coding-intron (FBgn0263144, intron 3 of 6) -9362 FBgn0033075 FBgn0033075 FBtr0114492 Pld protein_coding CG8478-S2-modencode_R2_peak_3271 chrX 19389882 19391171 + 27 NA promoter-TSS (FBgn0027621) protein_coding-promoter-TSS (FBgn0027621) -1501 FBgn0040890 FBgn0040890 FBtr0300214 ksh protein_coding CG8478-S2-modencode_R2_peak_677 chr2R 6958872 6960120 + 27 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -13595 FBgn0262817 FBgn0262817 FBtr0306049 CG43188 protein_coding CG8478-S2-modencode_R2_peak_323 chr2L 14580995 14581221 + 27 NA Intergenic Intergenic 7126 FBgn0261566 FBgn0261566 FBtr0302802 CG42680 protein_coding CG8478-S2-modencode_R2_peak_2604 chrU 5630797 5631186 + 27 NA NA NA NA NA CG8478-S2-modencode_R2_peak_803 chr2R 9828722 9828792 + 27 NA intron (FBgn0013733, intron 1 of 31) protein_coding-intron (FBgn0013733, intron 1 of 30) 2125 FBgn0033885 FBgn0033885 FBtr0087615 DJ-1alpha protein_coding CG8478-S2-modencode_R2_peak_1172 chr2R 20225187 20225310 + 27 NA Intergenic Intergenic -3419 FBgn0005638 FBgn0005638 FBtr0072272 slbo protein_coding CG8478-S2-modencode_R2_peak_401 chr2L 19865804 19865937 + 27 NA promoter-TSS (FBgn0263873) protein_coding-promoter-TSS (FBgn0263873) 9769 FBgn0263873 FBgn0263873 FBtr0329844 sick protein_coding CG8478-S2-modencode_R2_peak_2044 chr3R 9850673 9851350 + 27 NA intron (FBgn0264493, intron 1 of 8) protein_coding-intron (FBgn0264493, intron 1 of 8) 670 FBgn0264493 FBgn0264493 FBtr0301632 rdx protein_coding CG8478-S2-modencode_R2_peak_1480 chr3L 10515528 10515911 + 27 NA intron (FBgn0052062, intron 2 of 13) protein_coding-intron (FBgn0052062, intron 2 of 14) 6616 FBgn0052062 FBgn0052062 FBtr0305094 A2bp1 protein_coding CG8478-S2-modencode_R2_peak_2119 chr3R 12105784 12106458 + 27 NA promoter-TSS (FBgn0250823) protein_coding-promoter-TSS (FBgn0250823) 7945 FBgn0250823 FBgn0250823 FBtr0100332 gish protein_coding CG8478-S2-modencode_R2_peak_1708 chr3L 19071440 19073132 + 27 NA intron (FBgn0036844, intron 1 of 4) protein_coding-intron (FBgn0036844, intron 1 of 4) 7240 FBgn0036844 FBgn0036844 FBtr0075035 Mkp3 protein_coding CG8478-S2-modencode_R2_peak_1502 chr3L 10890956 10891953 + 27 NA exon (FBgn0036111, exon 1 of 4) protein_coding-exon (FBgn0036111, exon 1 of 4) 769 FBgn0036111 FBgn0036111 FBtr0076251 Aps protein_coding CG8478-S2-modencode_R2_peak_2479 chr3R 25960049 25960260 + 27 NA promoter-TSS (FBgn0086355) protein_coding-promoter-TSS (FBgn0086355) -157 FBgn0086355 FBgn0086355 FBtr0085584 Tpi protein_coding CG8478-S2-modencode_R2_peak_2411 chr3R 22362020 22362999 + 27 NA intron (FBgn0263289, intron 1 of 26) protein_coding-intron (FBgn0263289, intron 1 of 22) 437 FBgn0263289 FBgn0263289 FBtr0308629 scrib protein_coding CG8478-S2-modencode_R2_peak_1353 chr3L 4553537 4553687 + 27 NA TTS (FBgn0035558) protein_coding-TTS (FBgn0035558) 1624 FBgn0053777 FBgn0053777 FBtr0091778 CG33777 protein_coding CG8478-S2-modencode_R2_peak_273 chr2L 12475163 12475531 + 27 NA intron (FBgn0259176, intron 2 of 2) protein_coding-intron (FBgn0259176, intron 2 of 2) -15257 FBgn0262203 FBgn0262203 FBtr0304239 mir-967 pre_miRNA CG8478-S2-modencode_R2_peak_1465 chr3L 9758750 9758820 + 27 NA exon (FBgn0036043, exon 2 of 15) protein_coding-exon (FBgn0036043, exon 2 of 15) 2141 FBgn0036043 FBgn0036043 FBtr0301228 CG8177 protein_coding CG8478-S2-modencode_R2_peak_1879 chr3R 4631254 4631423 + 27 NA promoter-TSS (FBgn0037634) protein_coding-promoter-TSS (FBgn0037634) 14 FBgn0037633 FBgn0037633 FBtr0081934 CG9839 protein_coding CG8478-S2-modencode_R2_peak_75 chr2L 2376169 2376607 + 27 NA promoter-TSS (FBgn0031420) protein_coding-promoter-TSS (FBgn0031420) 547 FBgn0031420 FBgn0031420 FBtr0331437 CG9866 protein_coding CG8478-S2-modencode_R2_peak_2357 chr3R 21118586 21118742 + 27 NA promoter-TSS (FBgn0051098) protein_coding-promoter-TSS (FBgn0051098) 29 FBgn0051098 FBgn0051098 FBtr0084863 CG31098 protein_coding CG8478-S2-modencode_R2_peak_1908 chr3R 5061499 5063648 + 27 NA exon (FBgn0003165, exon 1 of 13) protein_coding-exon (FBgn0003165, exon 1 of 13) 3416 FBgn0000412 FBgn0000412 FBtr0301524 D1 protein_coding CG8478-S2-modencode_R2_peak_1028 chr2R 15156266 15156698 + 27 NA Intergenic Intergenic -6749 FBgn0003254 FBgn0003254 FBtr0330058 rib protein_coding CG8478-S2-modencode_R2_peak_2776 chrX 3666006 3667495 + 27 NA promoter-TSS (FBgn0086899) protein_coding-promoter-TSS (FBgn0086899) 77 FBgn0086899 FBgn0086899 FBtr0070596 tlk protein_coding CG8478-S2-modencode_R2_peak_1498 chr3L 10847203 10847355 + 27 NA Intergenic Intergenic -4225 FBgn0026160 FBgn0026160 FBtr0076268 tna protein_coding CG8478-S2-modencode_R2_peak_158 chr2L 7306805 7307070 + 27 NA promoter-TSS (FBgn0004009) protein_coding-promoter-TSS (FBgn0004009) -224 FBgn0004009 FBgn0004009 FBtr0079432 wg protein_coding CG8478-S2-modencode_R2_peak_135 chr2L 6083106 6083176 + 27 NA exon (FBgn0028420, exon 1 of 4) protein_coding-exon (FBgn0028420, exon 1 of 4) 4688 FBgn0031778 FBgn0031778 FBtr0308942 CR9162 ncRNA CG8478-S2-modencode_R2_peak_1655 chr3L 17915690 17916108 + 27 NA Intergenic Intergenic -10234 FBgn0036772 FBgn0036772 FBtr0075152 CG5290 protein_coding CG8478-S2-modencode_R2_peak_2144 chr3R 12774403 12774650 + 27 NA intron (FBgn0000015, intron 1 of 6) protein_coding-intron (FBgn0000015, intron 1 of 6) -17191 FBgn0000015 FBgn0000015 FBtr0330709 Abd-B protein_coding CG8478-S2-modencode_R2_peak_2074 chr3R 11068656 11069517 + 27 NA promoter-TSS (FBgn0001219) protein_coding-promoter-TSS (FBgn0001219) -855 FBgn0001219 FBgn0001219 FBtr0083056 Hsc70-4 protein_coding CG8478-S2-modencode_R2_peak_2863 chrX 6756580 6757203 + 27 NA Intergenic Intergenic -5650 FBgn0263993 FBgn0263993 FBtr0330263 CG43736 protein_coding CG8478-S2-modencode_R2_peak_438 chr2L 22363484 22364755 + 27 NA exon (FBgn0039972, exon 2 of 7) protein_coding-exon (FBgn0039972, exon 2 of 7) 9764 FBgn0039972 FBgn0039972 FBtr0306236 CG17018 protein_coding CG8478-S2-modencode_R2_peak_516 chr2R 3306625 3306792 + 27 NA exon (FBgn0003460, exon 1 of 7) protein_coding-exon (FBgn0003460, exon 1 of 7) 171 FBgn0003460 FBgn0003460 FBtr0088970 so protein_coding CG8478-S2-modencode_R2_peak_999 chr2R 14559119 14559198 + 27 NA intron (FBgn0023214, intron 1 of 1) protein_coding-intron (FBgn0023214, intron 1 of 1) 1879 FBgn0023214 FBgn0023214 FBtr0086652 edl protein_coding CG8478-S2-modencode_R2_peak_2763 chrX 3620073 3620206 + 27 NA intron (FBgn0086899, intron 1 of 7) protein_coding-intron (FBgn0086899, intron 1 of 7) -6474 FBgn0015286 FBgn0015286 FBtr0070584 Rala protein_coding CG8478-S2-modencode_R2_peak_3027 chrX 10426182 10428240 + 27 NA intron (FBgn0085443, intron 3 of 10) protein_coding-intron (FBgn0085443, intron 3 of 9) 33413 FBgn0030215 FBgn0030215 FBtr0310297 CG15296 protein_coding CG8478-S2-modencode_R2_peak_2551 chr4 76947 77220 + 27 NA promoter-TSS (FBgn0004859) protein_coding-promoter-TSS (FBgn0004859) -40 FBgn0264617 FBgn0264617 FBtr0333704 CR43957 ncRNA CG8478-S2-modencode_R2_peak_1518 chr3L 11358099 11359034 + 27 NA promoter-TSS (FBgn0036155) protein_coding-promoter-TSS (FBgn0036155) -581 FBgn0036155 FBgn0036155 FBtr0333387 CG6163 protein_coding CG8478-S2-modencode_R2_peak_2805 chrX 4580061 4580716 + 27 NA exon (FBgn0022768, exon 1 of 3) protein_coding-exon (FBgn0022768, exon 1 of 3) 516 FBgn0022768 FBgn0022768 FBtr0070685 Pp2C1 protein_coding CG8478-S2-modencode_R2_peak_1389 chr3L 7797819 7798530 + 27 NA promoter-TSS (FBgn0052369) protein_coding-promoter-TSS (FBgn0052369) 4751 FBgn0052369 FBgn0052369 FBtr0076783 CG32369 protein_coding CG8478-S2-modencode_R2_peak_710 chr2R 7084306 7085239 + 26 NA intron (FBgn0003396, intron 2 of 7) protein_coding-intron (FBgn0003396, intron 2 of 7) 21997 FBgn0033582 FBgn0033582 FBtr0330635 CG9084 protein_coding CG8478-S2-modencode_R2_peak_2631 chrX 387518 388151 + 26 NA promoter-TSS (FBgn0023537) protein_coding-promoter-TSS (FBgn0023537) -778 FBgn0023537 FBgn0023537 FBtr0070093 CG17896 protein_coding CG8478-S2-modencode_R2_peak_946 chr2R 13961824 13961894 + 26 NA intron (FBgn0085415, intron 1 of 4) protein_coding-intron (FBgn0085415, intron 1 of 4) 11650 FBgn0085415 FBgn0085415 FBtr0112627 CG34386 protein_coding CG8478-S2-modencode_R2_peak_3103 chrX 12618258 12618888 + 26 NA intron (FBgn0264678, intron 1 of 1) protein_coding-intron (FBgn0263865, intron 2 of 9) -6080 FBgn0264678 FBgn0264678 FBtr0333775 CR43963 ncRNA CG8478-S2-modencode_R2_peak_1965 chr3R 5934030 5935185 + 26 NA promoter-TSS (FBgn0028734) protein_coding-promoter-TSS (FBgn0028734) 1236 FBgn0028734 FBgn0028734 FBtr0082196 Fmr1 protein_coding CG8478-S2-modencode_R2_peak_1770 chr3L 22828414 22828804 + 26 NA promoter-TSS (FBgn0027339) protein_coding-promoter-TSS (FBgn0027339) -1559 FBgn0037195 FBgn0037195 FBtr0078546 CG11226 protein_coding CG8478-S2-modencode_R2_peak_1715 chr3L 19656742 19657057 + 26 NA promoter-TSS (FBgn0036899) protein_coding-promoter-TSS (FBgn0036899) 305 FBgn0036899 FBgn0036899 FBtr0331860 tey protein_coding CG8478-S2-modencode_R2_peak_1698 chr3L 18813076 18813146 + 26 NA intron (FBgn0036814, intron 1 of 5) protein_coding-intron (FBgn0036814, intron 1 of 5) 664 FBgn0036814 FBgn0036814 FBtr0332801 CG14073 protein_coding CG8478-S2-modencode_R2_peak_530 chr2R 3552880 3553289 + 26 NA promoter-TSS (FBgn0033205) protein_coding-promoter-TSS (FBgn0033205) -254 FBgn0033205 FBgn0033205 FBtr0088923 CG2064 protein_coding CG8478-S2-modencode_R2_peak_654 chr2R 6456916 6457253 + 26 NA promoter-TSS (FBgn0263102) protein_coding-promoter-TSS (FBgn0263102) 11691 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding CG8478-S2-modencode_R2_peak_599 chr2R 5757400 5757490 + 26 NA intron (FBgn0011241, intron 1 of 5) protein_coding-intron (FBgn0011241, intron 1 of 4) 427 FBgn0011241 FBgn0011241 FBtr0088453 cbx protein_coding CG8478-S2-modencode_R2_peak_2703 chrX 2211466 2211848 + 26 NA intron (FBgn0003079, intron 2 of 5) protein_coding-intron (FBgn0003079, intron 2 of 5) 4640 FBgn0054052 FBgn0054052 FBtr0308938 CR34052 ncRNA CG8478-S2-modencode_R2_peak_2808 chrX 4803002 4803540 + 26 NA promoter-TSS (FBgn0052772) protein_coding-promoter-TSS (FBgn0052772) 90 FBgn0052772 FBgn0052772 FBtr0300997 CG32772 protein_coding CG8478-S2-modencode_R2_peak_652 chr2R 6454000 6454625 + 26 NA intron (FBgn0263102, intron 3 of 10) protein_coding-intron (FBgn0263102, intron 3 of 9) 8919 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding CG8478-S2-modencode_R2_peak_3130 chrX 13165100 13165558 + 26 NA intron (FBgn0041210, intron 4 of 13) protein_coding-intron (FBgn0041210, intron 2 of 11) 12316 FBgn0000346 FBgn0000346 FBtr0073754 comt protein_coding CG8478-S2-modencode_R2_peak_1673 chr3L 18019188 18019404 + 26 NA intron (FBgn0000568, intron 3 of 7) protein_coding-intron (FBgn0000568, intron 1 of 5) -14121 FBgn0052192 FBgn0052192 FBtr0300047 CG32192 protein_coding CG8478-S2-modencode_R2_peak_2049 chr3R 10199086 10199561 + 26 NA promoter-TSS (FBgn0024321) protein_coding-promoter-TSS (FBgn0024321) -1855 FBgn0086058 FBgn0086058 FBtr0114334 snoRNA:Me18S-G1189 snoRNA CG8478-S2-modencode_R2_peak_1617 chr3L 16703676 16704141 + 26 NA intron (FBgn0264605, intron 1 of 5) protein_coding-intron (FBgn0063485, intron 1 of 6) 869 FBgn0264605 FBgn0264605 FBtr0333628 CG43954 protein_coding CG8478-S2-modencode_R2_peak_3034 chrX 10440088 10442053 + 26 NA promoter-TSS (FBgn0085443) protein_coding-promoter-TSS (FBgn0085443) 19554 FBgn0030215 FBgn0030215 FBtr0310297 CG15296 protein_coding CG8478-S2-modencode_R2_peak_2660 chrX 1511124 1511457 + 26 NA intron (FBgn0000210, intron 2 of 8) protein_coding-intron (FBgn0000210, intron 1 of 7) 898 FBgn0025390 FBgn0025390 FBtr0070284 Mur2B protein_coding CG8478-S2-modencode_R2_peak_3264 chrX 19054981 19055141 + 26 NA intron (FBgn0261461, intron 2 of 5) protein_coding-intron (FBgn0261461, intron 1 of 4) 8194 FBgn0263571 FBgn0263571 FBtr0309726 mir-4959 pre_miRNA CG8478-S2-modencode_R2_peak_1663 chr3L 17964194 17964530 + 26 NA exon (FBgn0000568, exon 1 of 5) protein_coding-exon (FBgn0000568, exon 1 of 5) 31816 FBgn0086081 FBgn0086081 FBtr0114357 snoRNA:Me28S-A30 snoRNA CG8478-S2-modencode_R2_peak_3166 chrX 14918412 14918483 + 26 NA promoter-TSS (FBgn0052594) protein_coding-promoter-TSS (FBgn0052594) -20 FBgn0052594 FBgn0052594 FBtr0310270 be protein_coding CG8478-S2-modencode_R2_peak_2270 chr3R 18222989 18223304 + 26 NA promoter-TSS (FBgn0051166) tRNA-promoter-TSS (FBgn0051166) -148 FBgn0051166 FBgn0051166 FBtr0084223 tRNA:CR31166 tRNA CG8478-S2-modencode_R2_peak_1777 chr3L 23688744 23688891 + 26 NA Intergenic Intergenic -19574 FBgn0039977 FBgn0039977 FBtr0333911 CG17454 protein_coding CG8478-S2-modencode_R2_peak_2154 chr3R 13383369 13383579 + 26 NA Intergenic Intergenic -1178 FBgn0264005 FBgn0264005 FBtr0330386 Hmx protein_coding CG8478-S2-modencode_R2_peak_1575 chr3L 15097394 15098016 + 26 NA intron (FBgn0262707, intron 1 of 3) protein_coding-intron (FBgn0262707, intron 1 of 3) -1277 FBgn0262707 FBgn0262707 FBtr0075635 CTPsyn protein_coding CG8478-S2-modencode_R2_peak_2918 chrX 8651769 8652052 + 26 NA exon (FBgn0026411, exon 7 of 7) protein_coding-exon (FBgn0026411, exon 7 of 7) 27476 FBgn0026411 FBgn0026411 FBtr0071279 Lim1 protein_coding CG8478-S2-modencode_R2_peak_1634 chr3L 17550319 17550581 + 26 NA exon (FBgn0025455, exon 1 of 4) protein_coding-exon (FBgn0025455, exon 1 of 4) 438 FBgn0025455 FBgn0025455 FBtr0075206 CycT protein_coding CG8478-S2-modencode_R2_peak_2866 chrX 6991236 6991392 + 26 NA promoter-TSS (FBgn0264270) protein_coding-promoter-TSS (FBgn0264270) 755 FBgn0264270 FBgn0264270 FBtr0331261 Sxl protein_coding CG8478-S2-modencode_R2_peak_261 chr2L 11447486 11447674 + 26 NA Intergenic Intergenic -1977 FBgn0261648 FBgn0261648 FBtr0089913 salm protein_coding CG8478-S2-modencode_R2_peak_1525 chr3L 11549402 11549566 + 26 NA intron (FBgn0259481, intron 1 of 3) protein_coding-intron (FBgn0259481, intron 1 of 3) -3739 FBgn0263569 FBgn0263569 FBtr0309721 mir-4968 pre_miRNA CG8478-S2-modencode_R2_peak_1131 chr2R 18429955 18430035 + 26 NA intron (FBgn0003175, intron 3 of 14) protein_coding-intron (FBgn0003175, intron 3 of 13) -7604 FBgn0034736 FBgn0034736 FBtr0071835 CG6018 protein_coding CG8478-S2-modencode_R2_peak_1128 chr2R 18205067 18205873 + 26 NA intron (FBgn0013272, intron 1 of 4) protein_coding-intron (FBgn0013272, intron 2 of 5) -4938 FBgn0013272 FBgn0013272 FBtr0071816 Gp150 protein_coding CG8478-S2-modencode_R2_peak_3287 chrX 19787385 19788183 + 26 NA promoter-TSS (FBgn0052529) protein_coding-promoter-TSS (FBgn0052529) -3691 FBgn0086782 FBgn0086782 FBtr0074802 amn protein_coding CG8478-S2-modencode_R2_peak_755 chr2R 8060124 8061475 + 26 NA intron (FBgn0014184, intron 1 of 2) protein_coding-intron (FBgn0014184, intron 1 of 2) -1802 FBgn0010621 FBgn0010621 FBtr0087988 Cct5 protein_coding CG8478-S2-modencode_R2_peak_2783 chrX 3680185 3680480 + 26 NA exon (FBgn0086899, exon 8 of 8) protein_coding-exon (FBgn0086899, exon 8 of 8) -3743 FBgn0029676 FBgn0029676 FBtr0333764 HIP-R protein_coding CG8478-S2-modencode_R2_peak_3081 chrX 12528023 12528314 + 26 NA intron (FBgn0030412, intron 2 of 23) protein_coding-intron (FBgn0030412, intron 1 of 22) -2261 FBgn0262187 FBgn0262187 FBtr0304204 mir-970 pre_miRNA CG8478-S2-modencode_R2_peak_590 chr2R 5464826 5465855 + 26 NA exon (FBgn0085436, exon 1 of 10) protein_coding-exon (FBgn0085436, exon 1 of 10) 1172 FBgn0085436 FBgn0085436 FBtr0302122 Not1 protein_coding CG8478-S2-modencode_R2_peak_639 chr2R 6430295 6431117 + 26 NA promoter-TSS (FBgn0005630) protein_coding-promoter-TSS (FBgn0005630) -5931 FBgn0263483 FBgn0263483 FBtr0309782 snoRNA:lola-d snoRNA CG8478-S2-modencode_R2_peak_3171 chrX 14974879 14974998 + 26 NA promoter-TSS (FBgn0053177) protein_coding-promoter-TSS (FBgn0053177) -644 FBgn0053177 FBgn0053177 FBtr0073962 CG33177 protein_coding CG8478-S2-modencode_R2_peak_2673 chrX 1944290 1944843 + 26 NA promoter-TSS (FBgn0025631) protein_coding-promoter-TSS (FBgn0025631) -2084 FBgn0025632 FBgn0025632 FBtr0070327 CG4313 protein_coding CG8478-S2-modencode_R2_peak_1285 chr3L 3239913 3240350 + 26 NA promoter-TSS (FBgn0035425) protein_coding-promoter-TSS (FBgn0035425) -809 FBgn0035425 FBgn0035425 FBtr0073093 CG17746 protein_coding CG8478-S2-modencode_R2_peak_89 chr2L 3539387 3540388 + 26 NA exon (FBgn0024244, exon 1 of 3) protein_coding-exon (FBgn0024244, exon 1 of 3) 152 FBgn0024244 FBgn0024244 FBtr0077531 drm protein_coding CG8478-S2-modencode_R2_peak_432 chr2L 21899293 21899445 + 26 NA Intergenic Intergenic -1080 FBgn0032965 FBgn0032965 FBtr0085950 CG11629 protein_coding CG8478-S2-modencode_R2_peak_2700 chrX 2199813 2200256 + 26 NA intron (FBgn0003079, intron 2 of 5) protein_coding-intron (FBgn0003079, intron 2 of 5) 10117 FBgn0003079 FBgn0003079 FBtr0111025 phl protein_coding CG8478-S2-modencode_R2_peak_2516 chr3R 26636498 26637848 + 26 NA intron (FBgn0027598, intron 1 of 5) protein_coding-intron (FBgn0027598, intron 1 of 5) 2835 FBgn0027598 FBgn0027598 FBtr0310072 cindr protein_coding CG8478-S2-modencode_R2_peak_1112 chr2R 17597983 17598094 + 26 NA exon (FBgn0050403, exon 2 of 2) protein_coding-exon (FBgn0050403, exon 2 of 2) 1076 FBgn0050403 FBgn0050403 FBtr0114523 CG30403 protein_coding CG8478-S2-modencode_R2_peak_1985 chr3R 7179216 7179533 + 26 NA promoter-TSS (FBgn0026064) protein_coding-promoter-TSS (FBgn0026064) -521 FBgn0026063 FBgn0026063 FBtr0082408 KP78b protein_coding CG8478-S2-modencode_R2_peak_2911 chrX 8454663 8455111 + 26 NA promoter-TSS (FBgn0030049) protein_coding-promoter-TSS (FBgn0030049) -41 FBgn0030049 FBgn0030049 FBtr0331723 Trf4-1 protein_coding CG8478-S2-modencode_R2_peak_3191 chrX 15706924 15707842 + 26 NA promoter-TSS (FBgn0003345) protein_coding-promoter-TSS (FBgn0003345) 1021 FBgn0003345 FBgn0003345 FBtr0074101 sd protein_coding CG8478-S2-modencode_R2_peak_2161 chr3R 13526347 13527385 + 26 NA intron (FBgn0261885, intron 4 of 15) protein_coding-intron (FBgn0261885, intron 4 of 15) -14083 FBgn0051249 FBgn0051249 FBtr0083483 CG31249 protein_coding CG8478-S2-modencode_R2_peak_2595 chrU 2606330 2606519 + 26 NA NA NA NA NA CG8478-S2-modencode_R2_peak_2658 chrX 1417526 1417765 + 26 NA TTS (FBgn0025390) protein_coding-TTS (FBgn0025390) 10553 FBgn0025394 FBgn0025394 FBtr0070260 inc protein_coding CG8478-S2-modencode_R2_peak_565 chr2R 4129163 4129309 + 26 NA Intergenic Intergenic 3872 FBgn0013726 FBgn0013726 FBtr0088793 pnut protein_coding CG8478-S2-modencode_R2_peak_2520 chr3R 26885920 26886790 + 26 NA exon (FBgn0002413, exon 1 of 3) protein_coding-exon (FBgn0002413, exon 1 of 3) 248 FBgn0002413 FBgn0002413 FBtr0085744 dco protein_coding CG8478-S2-modencode_R2_peak_1470 chr3L 9847280 9847524 + 26 NA intron (FBgn0004390, intron 1 of 4) protein_coding-intron (FBgn0004390, intron 1 of 4) 983 FBgn0004390 FBgn0004390 FBtr0330168 Gap1 protein_coding CG8478-S2-modencode_R2_peak_607 chr2R 5932877 5933475 + 26 NA intron (FBgn0033476, intron 1 of 6) protein_coding-intron (FBgn0033476, intron 1 of 6) -2181 FBgn0085249 FBgn0085249 FBtr0112413 CG34220 protein_coding CG8478-S2-modencode_R2_peak_1405 chr3L 7860145 7860841 + 25 NA promoter-TSS (FBgn0016694) protein_coding-promoter-TSS (FBgn0016694) -24 FBgn0016694 FBgn0016694 FBtr0332080 Pdp1 protein_coding CG8478-S2-modencode_R2_peak_1262 chr3L 2531468 2531922 + 25 NA intron (FBgn0010905, intron 3 of 16) protein_coding-intron (FBgn0010905, intron 3 of 15) -4722 FBgn0260480 FBgn0260480 FBtr0072962 CG32295 protein_coding CG8478-S2-modencode_R2_peak_1504 chr3L 11003490 11003750 + 25 NA Intergenic Intergenic -1687 FBgn0013469 FBgn0013469 FBtr0330080 klu protein_coding CG8478-S2-modencode_R2_peak_612 chr2R 5967718 5967893 + 25 NA promoter-TSS (FBgn0263201) snoRNA-promoter-TSS (FBgn0263201) -488 FBgn0263201 FBgn0263201 FBtr0309751 scaRNA:46E3 snoRNA CG8478-S2-modencode_R2_peak_554 chr2R 3918401 3918686 + 25 NA promoter-TSS (FBgn0025360) protein_coding-promoter-TSS (FBgn0025360) -246 FBgn0025360 FBgn0025360 FBtr0088866 Optix protein_coding CG8478-S2-modencode_R2_peak_2300 chr3R 19161555 19161689 + 25 NA intron (FBgn0003118, intron 3 of 8) protein_coding-intron (FBgn0003118, intron 3 of 8) 10262 FBgn0003118 FBgn0003118 FBtr0089715 pnt protein_coding CG8478-S2-modencode_R2_peak_472 chr2R 2028635 2029641 + 25 NA promoter-TSS (FBgn0011958) tRNA-promoter-TSS (FBgn0011958) -532 FBgn0011958 FBgn0011958 FBtr0085979 tRNA:R2:42Ad tRNA CG8478-S2-modencode_R2_peak_1174 chr2R 20427164 20427363 + 25 NA promoter-TSS (FBgn0035023) protein_coding-promoter-TSS (FBgn0035023) 3550 FBgn0035022 FBgn0035022 FBtr0072305 CG11413 protein_coding CG8478-S2-modencode_R2_peak_3127 chrX 13022097 13022436 + 25 NA promoter-TSS (FBgn0030451) protein_coding-promoter-TSS (FBgn0030451) 397 FBgn0065101 FBgn0065101 FBtr0091636 snmRNA:204 ncRNA CG8478-S2-modencode_R2_peak_1784 chr3LHet 715412 715955 + 25 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1026 chr2R 15117063 15117520 + 25 NA intron (FBgn0010434, intron 2 of 14) protein_coding-intron (FBgn0010434, intron 2 of 14) 721 FBgn0010434 FBgn0010434 FBtr0301279 cora protein_coding CG8478-S2-modencode_R2_peak_1443 chr3L 9012407 9012654 + 25 NA promoter-TSS (FBgn0035956) protein_coding-promoter-TSS (FBgn0035956) -184 FBgn0035956 FBgn0035956 FBtr0076547 Doc2 protein_coding CG8478-S2-modencode_R2_peak_2174 chr3R 14075046 14075181 + 25 NA TTS (FBgn0020238) protein_coding-TTS (FBgn0020238) -1723 FBgn0038589 FBgn0038589 FBtr0083569 CG18598 protein_coding CG8478-S2-modencode_R2_peak_2469 chr3R 25600459 25600656 + 25 NA intron (FBgn0001297, intron 1 of 2) protein_coding-intron (FBgn0001297, intron 1 of 2) 5896 FBgn0039694 FBgn0039694 FBtr0085538 fig protein_coding CG8478-S2-modencode_R2_peak_463 chr2R 1669431 1670684 + 25 NA exon (FBgn0025693, exon 1 of 10) protein_coding-exon (FBgn0025693, exon 1 of 10) 303 FBgn0025693 FBgn0025693 FBtr0086056 CG11163 protein_coding CG8478-S2-modencode_R2_peak_3089 chrX 12555540 12556109 + 25 NA intron (FBgn0011837, intron 2 of 3) protein_coding-intron (FBgn0011837, intron 2 of 3) 2329 FBgn0053963 FBgn0053963 FBtr0100004 CR33963 ncRNA CG8478-S2-modencode_R2_peak_364 chr2L 18152255 18152346 + 25 NA promoter-TSS (FBgn0032668) protein_coding-promoter-TSS (FBgn0032668) 110 FBgn0041184 FBgn0041184 FBtr0329929 Socs36E protein_coding CG8478-S2-modencode_R2_peak_1142 chr2R 18573410 18573947 + 25 NA exon (FBgn0020257, exon 1 of 1) protein_coding-exon (FBgn0020257, exon 1 of 1) 2800 FBgn0020257 FBgn0020257 FBtr0330249 ppa protein_coding CG8478-S2-modencode_R2_peak_169 chr2L 7976703 7977097 + 25 NA exon (FBgn0085450, exon 1 of 2) protein_coding-exon (FBgn0085450, exon 1 of 2) 165 FBgn0085450 FBgn0085450 FBtr0112720 Snoo protein_coding CG8478-S2-modencode_R2_peak_2506 chr3R 26591189 26591623 + 25 NA promoter-TSS (FBgn0004606) protein_coding-promoter-TSS (FBgn0004606) -242 FBgn0004606 FBgn0004606 FBtr0085702 zfh1 protein_coding CG8478-S2-modencode_R2_peak_1997 chr3R 7605983 7606683 + 25 NA TTS (FBgn0037949) protein_coding-TTS (FBgn0037949) -2262 FBgn0086910 FBgn0086910 FBtr0082533 l(3)neo38 protein_coding CG8478-S2-modencode_R2_peak_2782 chrX 3679647 3679882 + 25 NA exon (FBgn0086899, exon 7 of 8) protein_coding-exon (FBgn0086899, exon 7 of 8) -4311 FBgn0029676 FBgn0029676 FBtr0333764 HIP-R protein_coding CG8478-S2-modencode_R2_peak_1690 chr3L 18779550 18779835 + 25 NA intron (FBgn0001078, intron 2 of 9) protein_coding-intron (FBgn0001078, intron 2 of 9) -20848 FBgn0001078 FBgn0001078 FBtr0075087 ftz-f1 protein_coding CG8478-S2-modencode_R2_peak_1456 chr3L 9671446 9671880 + 25 NA promoter-TSS (FBgn0036028) protein_coding-promoter-TSS (FBgn0036028) 540 FBgn0016081 FBgn0016081 FBtr0333858 fry protein_coding CG8478-S2-modencode_R2_peak_284 chr2L 12521061 12521283 + 25 NA intron (FBgn0259176, intron 5 of 7) protein_coding-intron (FBgn0259176, intron 5 of 7) 13064 FBgn0263458 FBgn0263458 FBtr0309757 snoRNA:CG43051-a snoRNA CG8478-S2-modencode_R2_peak_2324 chr3R 19872228 19873331 + 25 NA promoter-TSS (FBgn0043455) protein_coding-promoter-TSS (FBgn0043455) 664 FBgn0005649 FBgn0005649 FBtr0333200 Rox8 protein_coding CG8478-S2-modencode_R2_peak_2293 chr3R 19157157 19157231 + 25 NA intron (FBgn0003118, intron 3 of 8) protein_coding-intron (FBgn0003118, intron 3 of 8) 14690 FBgn0003118 FBgn0003118 FBtr0089715 pnt protein_coding CG8478-S2-modencode_R2_peak_2467 chr3R 25597383 25598067 + 25 NA promoter-TSS (FBgn0001297) protein_coding-promoter-TSS (FBgn0001297) 8728 FBgn0039694 FBgn0039694 FBtr0085538 fig protein_coding CG8478-S2-modencode_R2_peak_1867 chr3R 3945462 3945983 + 25 NA intron (FBgn0243512, intron 3 of 3) protein_coding-intron (FBgn0243512, intron 3 of 3) -2699 FBgn0037549 FBgn0037549 FBtr0113205 CG7878 protein_coding CG8478-S2-modencode_R2_peak_2614 chrUextra 803076 803220 + 25 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1553 chr3L 14048661 14049338 + 25 NA intron (FBgn0052138, intron 1 of 9) protein_coding-intron (FBgn0052138, intron 1 of 8) 2203 FBgn0052138 FBgn0052138 FBtr0334053 CG32138 protein_coding CG8478-S2-modencode_R2_peak_1382 chr3L 7361492 7361773 + 25 NA promoter-TSS (FBgn0035772) protein_coding-promoter-TSS (FBgn0035772) 728 FBgn0035772 FBgn0035772 FBtr0302546 Sh3beta protein_coding CG8478-S2-modencode_R2_peak_3292 chrX 20102117 20102332 + 25 NA intron (FBgn0003654, intron 4 of 6) protein_coding-intron (FBgn0003654, intron 5 of 7) -5171 FBgn0053498 FBgn0053498 FBtr0089611 CG33498 protein_coding CG8478-S2-modencode_R2_peak_1328 chr3L 3787615 3787687 + 25 NA exon (FBgn0052264, exon 1 of 12) protein_coding-exon (FBgn0052264, exon 1 of 12) -3153 FBgn0052266 FBgn0052266 FBtr0073147 CG32266 protein_coding CG8478-S2-modencode_R2_peak_790 chr2R 9224042 9225730 + 25 NA Intergenic Intergenic -7940 FBgn0262391 FBgn0262391 FBtr0304273 mir-184 pre_miRNA CG8478-S2-modencode_R2_peak_2473 chr3R 25611945 25612395 + 25 NA intron (FBgn0001297, intron 1 of 2) protein_coding-intron (FBgn0001297, intron 1 of 2) -2488 FBgn0001297 FBgn0001297 FBtr0290076 kay protein_coding CG8478-S2-modencode_R2_peak_1111 chr2R 17596683 17597163 + 25 NA TTS (FBgn0050403) protein_coding-TTS (FBgn0050403) 2191 FBgn0050403 FBgn0050403 FBtr0114523 CG30403 protein_coding CG8478-S2-modencode_R2_peak_2106 chr3R 12031180 12031514 + 25 NA promoter-TSS (FBgn0010438) protein_coding-promoter-TSS (FBgn0010438) -374 FBgn0010438 FBgn0010438 FBtr0083277 mtSSB protein_coding CG8478-S2-modencode_R2_peak_3006 chrX 10223736 10224481 + 25 NA promoter-TSS (FBgn0011770) protein_coding-promoter-TSS (FBgn0011770) -226 FBgn0011770 FBgn0011770 FBtr0071472 Gip protein_coding CG8478-S2-modencode_R2_peak_1326 chr3L 3616516 3616631 + 25 NA exon (FBgn0035453, exon 4 of 4) protein_coding-exon (FBgn0035453, exon 4 of 4) 1191 FBgn0035453 FBgn0035453 FBtr0300062 CG10357 protein_coding CG8478-S2-modencode_R2_peak_2676 chrX 1971981 1972220 + 25 NA TTS (FBgn0040394) protein_coding-TTS (FBgn0040394) 1101 FBgn0025624 FBgn0025624 FBtr0070375 CG4025 protein_coding CG8478-S2-modencode_R2_peak_2976 chrX 9579660 9580098 + 25 NA promoter-TSS (FBgn0261617) protein_coding-promoter-TSS (FBgn0261617) 812 FBgn0261617 FBgn0261617 FBtr0302722 nej protein_coding CG8478-S2-modencode_R2_peak_1108 chr2R 17592030 17592500 + 25 NA promoter-TSS (FBgn0010228) protein_coding-promoter-TSS (FBgn0010228) -1852 FBgn0010228 FBgn0010228 FBtr0071674 HmgZ protein_coding CG8478-S2-modencode_R2_peak_1231 chr3L 685228 685738 + 25 NA promoter-TSS (FBgn0035153) protein_coding-promoter-TSS (FBgn0035153) 66 FBgn0035153 FBgn0035153 FBtr0072610 ebd1 protein_coding CG8478-S2-modencode_R2_peak_1846 chr3R 2949462 2949974 + 25 NA promoter-TSS (FBgn0037472) protein_coding-promoter-TSS (FBgn0037472) -554 FBgn0037472 FBgn0037472 FBtr0081563 CG10098 protein_coding CG8478-S2-modencode_R2_peak_1176 chr2R 20430790 20431269 + 25 NA promoter-TSS (FBgn0035023) protein_coding-promoter-TSS (FBgn0035023) -188 FBgn0035023 FBgn0035023 FBtr0300187 itp protein_coding CG8478-S2-modencode_R2_peak_2041 chr3R 9727213 9727575 + 25 NA promoter-TSS (FBgn0000576) protein_coding-promoter-TSS (FBgn0000576) -187 FBgn0000576 FBgn0000576 FBtr0082863 ems protein_coding CG8478-S2-modencode_R2_peak_81 chr2L 3152753 3152863 + 25 NA promoter-TSS (FBgn0011648) protein_coding-promoter-TSS (FBgn0011648) -55 FBgn0011648 FBgn0011648 FBtr0077616 Mad protein_coding CG8478-S2-modencode_R2_peak_16 chr2L 297966 298666 + 25 NA TTS (FBgn0024352) protein_coding-TTS (FBgn0024352) 436 FBgn0020622 FBgn0020622 FBtr0331207 Pi3K21B protein_coding CG8478-S2-modencode_R2_peak_2753 chrX 3573880 3574315 + 25 NA intron (FBgn0023215, intron 1 of 8) protein_coding-intron (FBgn0023215, intron 1 of 8) -8562 FBgn0023216 FBgn0023216 FBtr0307279 Parg protein_coding CG8478-S2-modencode_R2_peak_2584 chrM 3493 3693 + 25 NA NA NA NA NA CG8478-S2-modencode_R2_peak_426 chr2L 21251929 21252107 + 25 NA intron (FBgn0261239, intron 2 of 7) protein_coding-intron (FBgn0261239, intron 2 of 4) -9150 FBgn0021856 FBgn0021856 FBtr0081482 l(2)k14505 protein_coding CG8478-S2-modencode_R2_peak_2585 chrM 4071 4261 + 25 NA NA NA NA NA CG8478-S2-modencode_R2_peak_2198 chr3R 14989899 14990466 + 25 NA exon (FBgn0010768, exon 1 of 3) protein_coding-exon (FBgn0010768, exon 1 of 3) 239 FBgn0010768 FBgn0010768 FBtr0083733 sqz protein_coding CG8478-S2-modencode_R2_peak_1812 chr3R 1996517 1996701 + 25 NA TTS (FBgn0037405) protein_coding-TTS (FBgn0037405) -2758 FBgn0037406 FBgn0037406 FBtr0078588 Osi1 protein_coding CG8478-S2-modencode_R2_peak_101 chr2L 4333026 4333599 + 25 NA promoter-TSS (FBgn0020762) protein_coding-promoter-TSS (FBgn0020762) -614 FBgn0020762 FBgn0020762 FBtr0112898 Atet protein_coding CG8478-S2-modencode_R2_peak_2746 chrX 3343151 3343454 + 25 NA promoter-TSS (FBgn0029657) protein_coding-promoter-TSS (FBgn0029657) -9123 FBgn0029657 FBgn0029657 FBtr0332304 CG12535 protein_coding CG8478-S2-modencode_R2_peak_3121 chrX 12654309 12655377 + 25 NA promoter-TSS (FBgn0020513) protein_coding-promoter-TSS (FBgn0020513) -193 FBgn0020513 FBgn0020513 FBtr0073705 ade5 protein_coding CG8478-S2-modencode_R2_peak_12 chr2L 247499 247915 + 25 NA intron (FBgn0086902, intron 1 of 16) protein_coding-intron (FBgn0086902, intron 1 of 17) 3116 FBgn0086902 FBgn0086902 FBtr0078145 kis protein_coding CG8478-S2-modencode_R2_peak_2438 chr3R 24714994 24715254 + 25 NA promoter-TSS (FBgn0053203) protein_coding-promoter-TSS (FBgn0053203) -401 FBgn0053203 FBgn0053203 FBtr0301016 CG33203 protein_coding CG8478-S2-modencode_R2_peak_145 chr2L 6612444 6612538 + 25 NA exon (FBgn0031836, exon 2 of 5) protein_coding-exon (FBgn0031836, exon 2 of 5) 773 FBgn0031836 FBgn0031836 FBtr0079293 CG11050 protein_coding CG8478-S2-modencode_R2_peak_2368 chr3R 21472816 21473311 + 24 NA promoter-TSS (FBgn0039350) protein_coding-promoter-TSS (FBgn0039350) 76 FBgn0039350 FBgn0039350 FBtr0113288 jigr1 protein_coding CG8478-S2-modencode_R2_peak_2279 chr3R 19016930 19017445 + 24 NA promoter-TSS (FBgn0262975) protein_coding-promoter-TSS (FBgn0262975) 12569 FBgn0011596 FBgn0011596 FBtr0084399 fzo protein_coding CG8478-S2-modencode_R2_peak_131 chr2L 5421671 5422012 + 24 NA Intergenic Intergenic -10001 FBgn0263866 FBgn0263866 FBtr0329835 CR43713 ncRNA CG8478-S2-modencode_R2_peak_1327 chr3L 3765869 3766068 + 24 NA promoter-TSS (FBgn0052264) protein_coding-promoter-TSS (FBgn0052264) -10767 FBgn0035458 FBgn0035458 FBtr0303094 CG10858 protein_coding CG8478-S2-modencode_R2_peak_80 chr2L 3108335 3108529 + 24 NA promoter-TSS (FBgn0015600) protein_coding-promoter-TSS (FBgn0015600) -290 FBgn0015600 FBgn0015600 FBtr0112883 toc protein_coding CG8478-S2-modencode_R2_peak_2315 chr3R 19696919 19697397 + 24 NA intron (FBgn0025574, intron 2 of 9) protein_coding-intron (FBgn0025574, intron 2 of 9) -11806 FBgn0004185 FBgn0004185 FBtr0084528 snRNA:U1:95Ca snRNA CG8478-S2-modencode_R2_peak_2060 chr3R 10564547 10566676 + 24 NA intron (FBgn0011217, intron 1 of 4) protein_coding-intron (FBgn0011217, intron 2 of 5) 875 FBgn0011217 FBgn0011217 FBtr0310554 eff protein_coding CG8478-S2-modencode_R2_peak_121 chr2L 5294135 5295295 + 24 NA Intergenic Intergenic -11007 FBgn0016076 FBgn0016076 FBtr0300020 vri protein_coding CG8478-S2-modencode_R2_peak_1424 chr3L 8443151 8443573 + 24 NA promoter-TSS (FBgn0010825) protein_coding-promoter-TSS (FBgn0010825) 340 FBgn0010825 FBgn0010825 FBtr0076618 Gug protein_coding CG8478-S2-modencode_R2_peak_339 chr2L 16325078 16325439 + 24 NA exon (FBgn0000250, exon 1 of 6) protein_coding-exon (FBgn0000250, exon 1 of 6) 185 FBgn0000250 FBgn0000250 FBtr0080846 cact protein_coding CG8478-S2-modencode_R2_peak_3195 chrX 15899377 15899490 + 24 NA promoter-TSS (FBgn0030721) protein_coding-promoter-TSS (FBgn0030721) 444 FBgn0003969 FBgn0003969 FBtr0074141 vap protein_coding CG8478-S2-modencode_R2_peak_2868 chrX 7194012 7195413 + 24 NA intron (FBgn0029941, intron 2 of 6) protein_coding-intron (FBgn0029941, intron 2 of 6) -7262 FBgn0024250 FBgn0024250 FBtr0071048 brk protein_coding CG8478-S2-modencode_R2_peak_646 chr2R 6445897 6446599 + 24 NA intron (FBgn0263102, intron 1 of 10) protein_coding-intron (FBgn0263102, intron 1 of 9) 855 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding CG8478-S2-modencode_R2_peak_1919 chr3R 5178430 5179042 + 24 NA intron (FBgn0263749, intron 2 of 5) protein_coding-intron (FBgn0263749, intron 1 of 4) -1254 FBgn0086053 FBgn0086053 FBtr0114329 snoRNA:Me18S-G1358a snoRNA CG8478-S2-modencode_R2_peak_865 chr2R 11817807 11817912 + 24 NA intron (FBgn0034049, intron 1 of 7) protein_coding-intron (FBgn0034049, intron 1 of 7) 1575 FBgn0034049 FBgn0034049 FBtr0087299 bdg protein_coding CG8478-S2-modencode_R2_peak_891 chr2R 12466320 12466393 + 24 NA promoter-TSS (FBgn0016131) protein_coding-promoter-TSS (FBgn0016131) -1273 FBgn0016131 FBgn0016131 FBtr0087104 Cdk4 protein_coding CG8478-S2-modencode_R2_peak_2629 chrUextra 24365828 24365898 + 24 NA NA NA NA NA CG8478-S2-modencode_R2_peak_2064 chr3R 10919902 10920100 + 24 NA intron (FBgn0038286, intron 1 of 4) protein_coding-intron (FBgn0038286, intron 1 of 4) 1332 FBgn0038286 FBgn0038286 FBtr0113236 CG6966 protein_coding CG8478-S2-modencode_R2_peak_1800 chr3R 796440 796623 + 24 NA Intergenic Intergenic 5364 FBgn0037290 FBgn0037290 FBtr0078841 CG1124 protein_coding CG8478-S2-modencode_R2_peak_1788 chr3R 11 661 + 24 NA promoter-TSS (FBgn0037213) protein_coding-promoter-TSS (FBgn0037213) -18 FBgn0037213 FBgn0037213 FBtr0078962 CG12581 protein_coding CG8478-S2-modencode_R2_peak_1349 chr3L 4542735 4543427 + 24 NA intron (FBgn0035558, intron 2 of 3) protein_coding-intron (FBgn0035558, intron 2 of 3) 1030 FBgn0035558 FBgn0035558 FBtr0113142 CG11357 protein_coding CG8478-S2-modencode_R2_peak_833 chr2R 10414107 10414576 + 24 NA exon (FBgn0020245, exon 1 of 10) protein_coding-exon (FBgn0020245, exon 1 of 10) -11628 FBgn0033942 FBgn0033942 FBtr0087514 Cpr51A protein_coding CG8478-S2-modencode_R2_peak_1049 chr2R 15338267 15338956 + 24 NA intron (FBgn0003887, intron 1 of 1) protein_coding-intron (FBgn0003887, intron 1 of 1) -1403 FBgn0034447 FBgn0034447 FBtr0086535 CG7744 protein_coding CG8478-S2-modencode_R2_peak_3058 chrX 11510129 11510633 + 24 NA promoter-TSS (FBgn0030322) protein_coding-promoter-TSS (FBgn0030322) 222 FBgn0002723 FBgn0002723 FBtr0073521 Met protein_coding CG8478-S2-modencode_R2_peak_363 chr2L 18151257 18151950 + 24 NA intron (FBgn0041184, intron 1 of 3) protein_coding-intron (FBgn0041184, intron 1 of 3) 807 FBgn0041184 FBgn0041184 FBtr0329929 Socs36E protein_coding CG8478-S2-modencode_R2_peak_2151 chr3R 12940216 12940782 + 24 NA intron (FBgn0014141, intron 3 of 17) protein_coding-intron (FBgn0014141, intron 2 of 15) -5702 FBgn0085307 FBgn0085307 FBtr0112473 CG34278 protein_coding CG8478-S2-modencode_R2_peak_2519 chr3R 26884699 26885488 + 24 NA intron (FBgn0002413, intron 1 of 2) protein_coding-intron (FBgn0002413, intron 1 of 2) 1510 FBgn0002413 FBgn0002413 FBtr0085744 dco protein_coding CG8478-S2-modencode_R2_peak_2265 chr3R 17721397 17721580 + 24 NA intron (FBgn0038917, intron 4 of 4) protein_coding-intron (FBgn0038917, intron 4 of 4) 6227 FBgn0264426 FBgn0264426 FBtr0332545 CR43844 ncRNA CG8478-S2-modencode_R2_peak_3178 chrX 15583909 15584014 + 24 NA promoter-TSS (FBgn0262606) protein_coding-promoter-TSS (FBgn0262606) -803 FBgn0262606 FBgn0262606 FBtr0305280 CG43132 protein_coding CG8478-S2-modencode_R2_peak_3093 chrX 12564100 12564378 + 24 NA intron (FBgn0011837, intron 2 of 3) protein_coding-intron (FBgn0011837, intron 2 of 3) 10744 FBgn0053963 FBgn0053963 FBtr0100004 CR33963 ncRNA CG8478-S2-modencode_R2_peak_3104 chrX 12619140 12619597 + 24 NA intron (FBgn0264678, intron 1 of 1) protein_coding-intron (FBgn0263865, intron 2 of 9) -6875 FBgn0264678 FBgn0264678 FBtr0333775 CR43963 ncRNA CG8478-S2-modencode_R2_peak_2251 chr3R 17415497 17416939 + 24 NA promoter-TSS (FBgn0013984) protein_coding-promoter-TSS (FBgn0013984) -305 FBgn0013984 FBgn0013984 FBtr0290232 InR protein_coding CG8478-S2-modencode_R2_peak_2665 chrX 1587870 1588117 + 24 NA TTS (FBgn0029588) protein_coding-TTS (FBgn0029588) 1136 FBgn0029588 FBgn0029588 FBtr0089694 CG14798 protein_coding CG8478-S2-modencode_R2_peak_2432 chr3R 24367480 24367973 + 24 NA TTS (FBgn0039588) protein_coding-TTS (FBgn0039588) -1673 FBgn0003137 FBgn0003137 FBtr0301839 Ppn protein_coding CG8478-S2-modencode_R2_peak_3122 chrX 12679152 12679344 + 24 NA promoter-TSS (FBgn0052647) protein_coding-promoter-TSS (FBgn0052647) -257 FBgn0052647 FBgn0052647 FBtr0073703 CG32647 protein_coding CG8478-S2-modencode_R2_peak_2291 chr3R 19151497 19152715 + 24 NA intron (FBgn0003118, intron 3 of 8) protein_coding-intron (FBgn0003118, intron 3 of 8) 19778 FBgn0003118 FBgn0003118 FBtr0089715 pnt protein_coding CG8478-S2-modencode_R2_peak_35 chr2L 523041 523660 + 24 NA promoter-TSS (FBgn0003963) protein_coding-promoter-TSS (FBgn0003963) 19230 FBgn0010602 FBgn0010602 FBtr0310029 lwr protein_coding CG8478-S2-modencode_R2_peak_2751 chrX 3570739 3570900 + 24 NA intron (FBgn0023215, intron 1 of 8) protein_coding-intron (FBgn0023215, intron 1 of 8) -5284 FBgn0023216 FBgn0023216 FBtr0307279 Parg protein_coding CG8478-S2-modencode_R2_peak_2231 chr3R 16849701 16850182 + 24 NA promoter-TSS (FBgn0046763) protein_coding-promoter-TSS (FBgn0046763) -56 FBgn0046763 FBgn0046763 FBtr0084047 CG17278 protein_coding CG8478-S2-modencode_R2_peak_1226 chr3L 646765 647891 + 24 NA Intergenic Intergenic -1446 FBgn0035147 FBgn0035147 FBtr0306917 Gale protein_coding CG8478-S2-modencode_R2_peak_1461 chr3L 9686953 9687613 + 24 NA intron (FBgn0036030, intron 2 of 7) protein_coding-intron (FBgn0036030, intron 2 of 6) 2517 FBgn0036030 FBgn0036030 FBtr0333856 CG6767 protein_coding CG8478-S2-modencode_R2_peak_3140 chrX 13518755 13519111 + 24 NA promoter-TSS (FBgn0030504) protein_coding-promoter-TSS (FBgn0030504) -494 FBgn0030504 FBgn0030504 FBtr0073848 CG2691 protein_coding CG8478-S2-modencode_R2_peak_2244 chr3R 17201929 17202592 + 24 NA intron (FBgn0002781, intron 3 of 4) protein_coding-intron (FBgn0002781, intron 3 of 4) 861 FBgn0002781 FBgn0002781 FBtr0084073 mod(mdg4) protein_coding CG8478-S2-modencode_R2_peak_2769 chrX 3642700 3643323 + 24 NA intron (FBgn0086899, intron 1 of 9) protein_coding-intron (FBgn0086899, intron 1 of 9) -23662 FBgn0086899 FBgn0086899 FBtr0070596 tlk protein_coding CG8478-S2-modencode_R2_peak_57 chr2L 1909680 1910385 + 24 NA intron (FBgn0031374, intron 2 of 17) protein_coding-intron (FBgn0031374, intron 2 of 18) 25410 FBgn0031374 FBgn0031374 FBtr0110882 CG7337 protein_coding CG8478-S2-modencode_R2_peak_1503 chr3L 11002285 11002407 + 24 NA promoter-TSS (FBgn0013469) protein_coding-promoter-TSS (FBgn0013469) -413 FBgn0013469 FBgn0013469 FBtr0330080 klu protein_coding CG8478-S2-modencode_R2_peak_2594 chrU 544329 544532 + 24 NA NA NA NA NA CG8478-S2-modencode_R2_peak_932 chr2R 13422738 13423493 + 24 NA promoter-TSS (FBgn0034237) protein_coding-promoter-TSS (FBgn0034237) 256 FBgn0263197 FBgn0263197 FBtr0086948 Patronin protein_coding CG8478-S2-modencode_R2_peak_618 chr2R 6043501 6043643 + 24 NA TTS (FBgn0033495) protein_coding-TTS (FBgn0033495) -1190 FBgn0033494 FBgn0033494 FBtr0299832 KCNQ protein_coding CG8478-S2-modencode_R2_peak_2004 chr3R 8104578 8104935 + 24 NA intron (FBgn0003651, intron 1 of 4) protein_coding-intron (FBgn0003651, intron 1 of 4) -2118 FBgn0003651 FBgn0003651 FBtr0331183 svp protein_coding CG8478-S2-modencode_R2_peak_2689 chrX 2164296 2164512 + 24 NA TTS (FBgn0023529) protein_coding-TTS (FBgn0023529) 308 FBgn0023528 FBgn0023528 FBtr0300793 CG2924 protein_coding CG8478-S2-modencode_R2_peak_2283 chr3R 19118662 19119142 + 24 NA intron (FBgn0003118, intron 6 of 8) protein_coding-intron (FBgn0003118, intron 1 of 3) -2991 FBgn0039071 FBgn0039071 FBtr0084382 CG4434 protein_coding CG8478-S2-modencode_R2_peak_95 chr2L 3803765 3804091 + 24 NA intron (FBgn0021800, intron 1 of 3) protein_coding-intron (FBgn0021800, intron 1 of 3) -1771 FBgn0021800 FBgn0021800 FBtr0077498 l(2)k16918 protein_coding CG8478-S2-modencode_R2_peak_2668 chrX 1787760 1787830 + 24 NA intron (FBgn0000117, intron 5 of 6) protein_coding-intron (FBgn0000117, intron 5 of 6) 3506 FBgn0023519 FBgn0023519 FBtr0070314 mRpL16 protein_coding CG8478-S2-modencode_R2_peak_937 chr2R 13604004 13604688 + 24 NA promoter-TSS (FBgn0028494) protein_coding-promoter-TSS (FBgn0028494) -5498 FBgn0034263 FBgn0034263 FBtr0086859 CG10934 protein_coding CG8478-S2-modencode_R2_peak_1648 chr3L 17607061 17607515 + 24 NA intron (FBgn0000567, intron 1 of 7) protein_coding-intron (FBgn0000567, intron 1 of 7) 5137 FBgn0000567 FBgn0000567 FBtr0075204 Eip74EF protein_coding CG8478-S2-modencode_R2_peak_2539 chr3R 27550923 27552492 + 24 NA promoter-TSS (FBgn0003870) protein_coding-intron (FBgn0003870, intron 1 of 4) -417 FBgn0003870 FBgn0003870 FBtr0303228 ttk protein_coding CG8478-S2-modencode_R2_peak_2352 chr3R 20701616 20702066 + 24 NA promoter-TSS (FBgn0039241) protein_coding-promoter-TSS (FBgn0039241) 525 FBgn0039240 FBgn0039240 FBtr0084726 CG3744 protein_coding CG8478-S2-modencode_R2_peak_2218 chr3R 16604004 16604809 + 24 NA intron (FBgn0038826, intron 2 of 11) protein_coding-intron (FBgn0038826, intron 2 of 11) -6083 FBgn0046689 FBgn0046689 FBtr0083996 Takl1 protein_coding CG8478-S2-modencode_R2_peak_610 chr2R 5965700 5965999 + 24 NA promoter-TSS (FBgn0033483) protein_coding-promoter-TSS (FBgn0033483) -21 FBgn0033483 FBgn0033483 FBtr0088405 egr protein_coding CG8478-S2-modencode_R2_peak_1473 chr3L 10347883 10348053 + 24 NA Intergenic Intergenic -10413 FBgn0262439 FBgn0262439 FBtr0304433 mir-276a pre_miRNA CG8478-S2-modencode_R2_peak_538 chr2R 3630393 3630998 + 24 NA intron (FBgn0050497, intron 2 of 2) protein_coding-intron (FBgn0050497, intron 2 of 2) 2107 FBgn0050497 FBgn0050497 FBtr0088932 CG30497 protein_coding CG8478-S2-modencode_R2_peak_138 chr2L 6086724 6086906 + 24 NA intron (FBgn0028420, intron 1 of 3) protein_coding-intron (FBgn0028420, intron 1 of 3) -4754 FBgn0028420 FBgn0028420 FBtr0290297 Kr-h1 protein_coding CG8478-S2-modencode_R2_peak_769 chr2R 8803858 8805219 + 24 NA promoter-TSS (FBgn0010488) protein_coding-promoter-TSS (FBgn0010488) 1036 FBgn0010488 FBgn0010488 FBtr0087787 NAT1 protein_coding CG8478-S2-modencode_R2_peak_415 chr2L 20823750 20824707 + 24 NA promoter-TSS (FBgn0032889) protein_coding-promoter-TSS (FBgn0032889) -208 FBgn0032889 FBgn0032889 FBtr0081418 CG9331 protein_coding CG8478-S2-modencode_R2_peak_2199 chr3R 14991365 14991542 + 24 NA intron (FBgn0010768, intron 1 of 2) protein_coding-intron (FBgn0010768, intron 1 of 2) 1510 FBgn0010768 FBgn0010768 FBtr0083733 sqz protein_coding CG8478-S2-modencode_R2_peak_514 chr2R 3264136 3264282 + 24 NA intron (FBgn0033159, intron 2 of 23) protein_coding-intron (FBgn0033159, intron 2 of 23) 5165 FBgn0033159 FBgn0033159 FBtr0306787 Dscam protein_coding CG8478-S2-modencode_R2_peak_587 chr2R 5452434 5453062 + 24 NA TTS (FBgn0085436) protein_coding-TTS (FBgn0085436) 3605 FBgn0033423 FBgn0033423 FBtr0088520 CG1809 protein_coding CG8478-S2-modencode_R2_peak_2971 chrX 9552027 9553236 + 24 NA TTS (FBgn0030148) protein_coding-TTS (FBgn0030148) 4160 FBgn0030148 FBgn0030148 FBtr0071403 CG3106 protein_coding CG8478-S2-modencode_R2_peak_2639 chrX 927079 927348 + 24 NA promoter-TSS (FBgn0003638) protein_coding-promoter-TSS (FBgn0003638) -136 FBgn0003638 FBgn0003638 FBtr0305652 su(w[a]) protein_coding CG8478-S2-modencode_R2_peak_2055 chr3R 10515076 10516432 + 24 NA intron (FBgn0051314, intron 1 of 6) protein_coding-intron (FBgn0051314, intron 1 of 7) 7303 FBgn0051314 FBgn0051314 FBtr0301499 Neu3 protein_coding CG8478-S2-modencode_R2_peak_1399 chr3L 7849278 7849652 + 24 NA promoter-TSS (FBgn0016694) protein_coding-promoter-TSS (FBgn0016694) 11004 FBgn0016694 FBgn0016694 FBtr0332080 Pdp1 protein_coding CG8478-S2-modencode_R2_peak_817 chr2R 9895744 9896273 + 24 NA promoter-TSS (FBgn0002643) protein_coding-promoter-TSS (FBgn0002643) -2522 FBgn0263539 FBgn0263539 FBtr0309641 mir-4978 pre_miRNA CG8478-S2-modencode_R2_peak_1809 chr3R 1473671 1474281 + 24 NA promoter-TSS (FBgn0262125) protein_coding-promoter-TSS (FBgn0262125) 483 FBgn0027951 FBgn0027951 FBtr0330315 MTA1-like protein_coding CG8478-S2-modencode_R2_peak_2635 chrX 548325 548845 + 24 NA intron (FBgn0025639, intron 1 of 2) protein_coding-intron (FBgn0025639, intron 1 of 2) 386 FBgn0025639 FBgn0025639 FBtr0308652 Hmt4-20 protein_coding CG8478-S2-modencode_R2_peak_2610 chrU 6478911 6479133 + 23 NA NA NA NA NA CG8478-S2-modencode_R2_peak_2191 chr3R 14742352 14743026 + 23 NA intron (FBgn0261113, intron 1 of 4) protein_coding-intron (FBgn0261113, intron 1 of 4) -1522 FBgn0261113 FBgn0261113 FBtr0083703 Xrp1 protein_coding CG8478-S2-modencode_R2_peak_2535 chr3R 27432986 27433427 + 23 NA intron (FBgn0039858, intron 1 of 5) protein_coding-intron (FBgn0039858, intron 1 of 5) 3500 FBgn0039858 FBgn0039858 FBtr0085803 CycG protein_coding CG8478-S2-modencode_R2_peak_2811 chrX 4831152 4831307 + 23 NA intron (FBgn0029738, intron 1 of 3) protein_coding-intron (FBgn0029738, intron 1 of 3) -1653 FBgn0029738 FBgn0029738 FBtr0321276 CG4068 protein_coding CG8478-S2-modencode_R2_peak_2832 chrX 5793456 5793762 + 23 NA Intergenic Intergenic -1285 FBgn0000042 FBgn0000042 FBtr0070823 Act5C protein_coding CG8478-S2-modencode_R2_peak_1581 chr3L 15224040 15224508 + 23 NA Intergenic Intergenic -4445 FBgn0029114 FBgn0029114 FBtr0075607 Tollo protein_coding CG8478-S2-modencode_R2_peak_2205 chr3R 15662712 15662852 + 23 NA promoter-TSS (FBgn0014135) protein_coding-promoter-TSS (FBgn0014135) -243 FBgn0014135 FBgn0014135 FBtr0300123 bnl protein_coding CG8478-S2-modencode_R2_peak_2737 chrX 3283834 3284543 + 23 NA exon (FBgn0262656, exon 3 of 3) protein_coding-exon (FBgn0262656, exon 3 of 3) 16996 FBgn0262656 FBgn0262656 FBtr0070525 dm protein_coding CG8478-S2-modencode_R2_peak_3164 chrX 14917046 14917137 + 23 NA intron (FBgn0030600, intron 13 of 22) protein_coding-intron (FBgn0030600, intron 13 of 22) -1376 FBgn0052594 FBgn0052594 FBtr0310270 be protein_coding CG8478-S2-modencode_R2_peak_578 chr2R 4927005 4927225 + 23 NA TTS (FBgn0033366) protein_coding-TTS (FBgn0033366) 2532 FBgn0033366 FBgn0033366 FBtr0088664 Ance-4 protein_coding CG8478-S2-modencode_R2_peak_1146 chr2R 18821528 18822206 + 23 NA promoter-TSS (FBgn0034800) protein_coding-promoter-TSS (FBgn0034800) -267 FBgn0034800 FBgn0034800 FBtr0071995 CG3788 protein_coding CG8478-S2-modencode_R2_peak_1741 chr3L 21033490 21033720 + 23 NA intron (FBgn0026179, intron 1 of 5) protein_coding-intron (FBgn0026179, intron 1 of 5) -6302 FBgn0037046 FBgn0037046 FBtr0078326 CG10581 protein_coding CG8478-S2-modencode_R2_peak_249 chr2L 10259998 10260303 + 23 NA promoter-TSS (FBgn0026379) protein_coding-promoter-TSS (FBgn0026379) 899 FBgn0026379 FBgn0026379 FBtr0300562 Pten protein_coding CG8478-S2-modencode_R2_peak_2390 chr3R 21931926 21932393 + 23 NA promoter-TSS (FBgn0051324) protein_coding-promoter-TSS (FBgn0051324) -7726 FBgn0039411 FBgn0039411 FBtr0113293 dys protein_coding CG8478-S2-modencode_R2_peak_1972 chr3R 6216637 6217127 + 23 NA intron (FBgn0259938, intron 1 of 2) protein_coding-intron (FBgn0259938, intron 1 of 3) 2897 FBgn0259938 FBgn0259938 FBtr0305152 cwo protein_coding CG8478-S2-modencode_R2_peak_431 chr2L 21828212 21828882 + 23 NA promoter-TSS (FBgn0003866) protein_coding-promoter-TSS (FBgn0003866) -46 FBgn0003866 FBgn0003866 FBtr0085906 tsh protein_coding CG8478-S2-modencode_R2_peak_2812 chrX 4831516 4831833 + 23 NA intron (FBgn0029738, intron 1 of 3) protein_coding-intron (FBgn0029738, intron 1 of 3) -1491 FBgn0004368 FBgn0004368 FBtr0301794 Ptp4E protein_coding CG8478-S2-modencode_R2_peak_3062 chrX 11578400 11578786 + 23 NA intron (FBgn0014133, intron 3 of 6) protein_coding-intron (FBgn0014133, intron 3 of 5) 5565 FBgn0014133 FBgn0014133 FBtr0073526 bif protein_coding CG8478-S2-modencode_R2_peak_2565 chr4 828515 828675 + 23 NA promoter-TSS (FBgn0039938) protein_coding-promoter-TSS (FBgn0039938) 8536 FBgn0039939 FBgn0039939 FBtr0089242 CG11231 protein_coding CG8478-S2-modencode_R2_peak_509 chr2R 2912423 2912634 + 23 NA promoter-TSS (FBgn0033127) protein_coding-promoter-TSS (FBgn0033127) 11 FBgn0033127 FBgn0033127 FBtr0089023 Tsp42Ef protein_coding CG8478-S2-modencode_R2_peak_3294 chrX 20122772 20123161 + 23 NA promoter-TSS (FBgn0031098) protein_coding-promoter-TSS (FBgn0031098) -450 FBgn0031098 FBgn0031098 FBtr0077341 CG17068 protein_coding CG8478-S2-modencode_R2_peak_2993 chrX 10105180 10106241 + 23 NA intron (FBgn0030183, intron 1 of 1) protein_coding-intron (FBgn0030183, intron 1 of 2) -1293 FBgn0028342 FBgn0028342 FBtr0071438 l(1)G0230 protein_coding CG8478-S2-modencode_R2_peak_2185 chr3R 14306041 14306184 + 23 NA exon (FBgn0004652, exon 1 of 8) protein_coding-exon (FBgn0004652, exon 1 of 8) 65196 FBgn0004652 FBgn0004652 FBtr0083647 fru protein_coding CG8478-S2-modencode_R2_peak_2451 chr3R 25113094 25113483 + 23 NA Intergenic Intergenic 9663 FBgn0039659 FBgn0039659 FBtr0085439 CG14506 protein_coding CG8478-S2-modencode_R2_peak_181 chr2L 8104069 8104405 + 23 NA intron (FBgn0261822, intron 4 of 9) protein_coding-intron (FBgn0261822, intron 2 of 6) 15933 FBgn0261822 FBgn0261822 FBtr0079573 Bsg protein_coding CG8478-S2-modencode_R2_peak_2647 chrX 1168799 1169276 + 23 NA promoter-TSS (FBgn0028550) protein_coding-promoter-TSS (FBgn0028550) -355 FBgn0028550 FBgn0028550 FBtr0330391 Atf3 protein_coding CG8478-S2-modencode_R2_peak_2211 chr3R 16135191 16135383 + 23 NA exon (FBgn0261550, exon 1 of 9) protein_coding-exon (FBgn0261550, exon 1 of 9) -2029 FBgn0038784 FBgn0038784 FBtr0083900 CG4362 protein_coding CG8478-S2-modencode_R2_peak_2881 chrX 7588225 7588493 + 23 NA intron (FBgn0029504, intron 1 of 5) protein_coding-intron (FBgn0029504, intron 1 of 5) 592 FBgn0029504 FBgn0029504 FBtr0071079 CHES-1-like protein_coding CG8478-S2-modencode_R2_peak_783 chr2R 9110360 9111033 + 23 NA promoter-TSS (FBgn0043010) protein_coding-promoter-TSS (FBgn0043010) -400 FBgn0011763 FBgn0011763 FBtr0087741 Dp protein_coding CG8478-S2-modencode_R2_peak_2891 chrX 7802644 7803019 + 23 NA promoter-TSS (FBgn0029975) protein_coding-promoter-TSS (FBgn0029975) -80 FBgn0029975 FBgn0029975 FBtr0071091 CG1444 protein_coding CG8478-S2-modencode_R2_peak_2779 chrX 3669960 3670696 + 23 NA exon (FBgn0086899, exon 2 of 9) protein_coding-exon (FBgn0086899, exon 2 of 9) -1161 FBgn0263532 FBgn0263532 FBtr0309622 mir-4962 pre_miRNA CG8478-S2-modencode_R2_peak_801 chr2R 9812449 9813804 + 23 NA promoter-TSS (FBgn0013733) protein_coding-promoter-TSS (FBgn0013733) -14675 FBgn0013733 FBgn0013733 FBtr0304853 shot protein_coding CG8478-S2-modencode_R2_peak_246 chr2L 9907167 9907901 + 23 NA exon (FBgn0032156, exon 3 of 10) protein_coding-exon (FBgn0032156, exon 3 of 10) 1099 FBgn0032156 FBgn0032156 FBtr0290197 CG13124 protein_coding CG8478-S2-modencode_R2_peak_2927 chrX 9057892 9058458 + 23 NA promoter-TSS (FBgn0026206) protein_coding-promoter-TSS (FBgn0026206) -21 FBgn0026206 FBgn0026206 FBtr0333475 mei-P26 protein_coding CG8478-S2-modencode_R2_peak_170 chr2L 7984088 7984365 + 23 NA promoter-TSS (FBgn0085450) protein_coding-promoter-TSS (FBgn0085450) -1057 FBgn0031968 FBgn0031968 FBtr0306336 CG7231 protein_coding CG8478-S2-modencode_R2_peak_2622 chrUextra 8511120 8511291 + 23 NA NA NA NA NA CG8478-S2-modencode_R2_peak_2142 chr3R 12708270 12708502 + 23 NA intron (FBgn0263610, intron 3 of 7) ncRNA-intron (FBgn0263610, intron 2 of 6) -9746 FBgn0263595 FBgn0263595 FBtr0309896 CR43617 ncRNA CG8478-S2-modencode_R2_peak_443 chr2R 147737 147900 + 23 NA Intergenic Intergenic -17374 FBgn0262117 FBgn0262117 FBtr0111269 IntS3 protein_coding CG8478-S2-modencode_R2_peak_2339 chr3R 20146182 20146400 + 23 NA intron (FBgn0011785, intron 4 of 14) protein_coding-intron (FBgn0011785, intron 4 of 14) 1550 FBgn0011785 FBgn0011785 FBtr0084604 BRWD3 protein_coding CG8478-S2-modencode_R2_peak_2766 chrX 3637925 3638150 + 23 NA intron (FBgn0086899, intron 1 of 7) protein_coding-intron (FBgn0086899, intron 1 of 7) -24372 FBgn0015286 FBgn0015286 FBtr0070584 Rala protein_coding CG8478-S2-modencode_R2_peak_3087 chrX 12554095 12554594 + 23 NA exon (FBgn0053963, exon 1 of 1) ncRNA-exon (FBgn0053963, exon 1 of 1) 849 FBgn0053963 FBgn0053963 FBtr0100004 CR33963 ncRNA CG8478-S2-modencode_R2_peak_1645 chr3L 17590079 17590161 + 23 NA intron (FBgn0000567, intron 5 of 7) protein_coding-intron (FBgn0000567, intron 5 of 7) 22305 FBgn0000567 FBgn0000567 FBtr0075204 Eip74EF protein_coding CG8478-S2-modencode_R2_peak_2426 chr3R 23406198 23406535 + 23 NA intron (FBgn0027492, intron 1 of 9) protein_coding-intron (FBgn0027492, intron 1 of 8) 899 FBgn0027492 FBgn0027492 FBtr0085209 wdb protein_coding CG8478-S2-modencode_R2_peak_2909 chrX 8304110 8304660 + 23 NA promoter-TSS (FBgn0262976) protein_coding-promoter-TSS (FBgn0262976) -254 FBgn0262976 FBgn0262976 FBtr0307287 lawc protein_coding CG8478-S2-modencode_R2_peak_876 chr2R 12037885 12038523 + 23 NA exon (FBgn0034083, exon 1 of 9) protein_coding-exon (FBgn0034083, exon 1 of 9) 576 FBgn0034083 FBgn0034083 FBtr0302084 lbk protein_coding CG8478-S2-modencode_R2_peak_2527 chr3R 27049587 27050610 + 23 NA promoter-TSS (FBgn0039831) protein_coding-promoter-TSS (FBgn0039831) 3672 FBgn0039831 FBgn0039831 FBtr0113312 CG12054 protein_coding CG8478-S2-modencode_R2_peak_28 chr2L 505328 505955 + 23 NA intron (FBgn0003963, intron 2 of 8) protein_coding-intron (FBgn0003963, intron 1 of 7) -25953 FBgn0043364 FBgn0043364 FBtr0310030 cbt protein_coding CG8478-S2-modencode_R2_peak_1057 chr2R 15518500 15519706 + 23 NA promoter-TSS (FBgn0003435) protein_coding-promoter-TSS (FBgn0003435) -3681 FBgn0261807 FBgn0261807 FBtr0303283 CG42753 protein_coding CG8478-S2-modencode_R2_peak_1952 chr3R 5909537 5910402 + 23 NA Intergenic Intergenic -6934 FBgn0262378 FBgn0262378 FBtr0304218 mir-317 pre_miRNA CG8478-S2-modencode_R2_peak_406 chr2L 20417664 20417942 + 23 NA promoter-TSS (FBgn0032858) protein_coding-promoter-TSS (FBgn0032858) -545 FBgn0083038 FBgn0083038 FBtr0113539 snoRNA:Psi18S-525a snoRNA CG8478-S2-modencode_R2_peak_2661 chrX 1514352 1514431 + 23 NA intron (FBgn0000210, intron 2 of 8) protein_coding-intron (FBgn0000210, intron 1 of 7) -2203 FBgn0025390 FBgn0025390 FBtr0070284 Mur2B protein_coding CG8478-S2-modencode_R2_peak_1081 chr2R 16963371 16963919 + 23 NA promoter-TSS (FBgn0003748) protein_coding-promoter-TSS (FBgn0003748) 475 FBgn0003748 FBgn0003748 FBtr0071540 Treh protein_coding CG8478-S2-modencode_R2_peak_485 chr2R 2108576 2109647 + 23 NA intron (FBgn0263144, intron 1 of 6) protein_coding-intron (FBgn0263144, intron 1 of 6) 567 FBgn0263144 FBgn0263144 FBtr0085993 bin3 protein_coding CG8478-S2-modencode_R2_peak_3003 chrX 10216707 10217203 + 23 NA intron (FBgn0259170, intron 2 of 6) protein_coding-intron (FBgn0259170, intron 2 of 6) -3542 FBgn0030189 FBgn0030189 FBtr0071441 CG2909 protein_coding CG8478-S2-modencode_R2_peak_156 chr2L 7037910 7039176 + 23 NA TTS (FBgn0031883) protein_coding-TTS (FBgn0031883) -3816 FBgn0262872 FBgn0262872 FBtr0306230 milt protein_coding CG8478-S2-modencode_R2_peak_1497 chr3L 10845435 10846379 + 23 NA Intergenic Intergenic -5597 FBgn0026160 FBgn0026160 FBtr0076268 tna protein_coding CG8478-S2-modencode_R2_peak_2262 chr3R 17679107 17680089 + 23 NA intron (FBgn0015229, intron 1 of 1) protein_coding-intron (FBgn0015229, intron 1 of 1) 2386 FBgn0015229 FBgn0015229 FBtr0084157 glec protein_coding CG8478-S2-modencode_R2_peak_1479 chr3L 10510831 10510901 + 23 NA intron (FBgn0052062, intron 1 of 14) protein_coding-intron (FBgn0052062, intron 1 of 14) 1763 FBgn0052062 FBgn0052062 FBtr0305094 A2bp1 protein_coding CG8478-S2-modencode_R2_peak_1288 chr3L 3248519 3249725 + 23 NA promoter-TSS (FBgn0263617) ncRNA-promoter-TSS (FBgn0263617) -251 FBgn0263617 FBgn0263617 FBtr0309982 CR43626 ncRNA CG8478-S2-modencode_R2_peak_1315 chr3L 3447462 3447810 + 23 NA intron (FBgn0026259, intron 5 of 8) protein_coding-intron (FBgn0026259, intron 5 of 8) 13341 FBgn0026259 FBgn0026259 FBtr0073144 eIF5B protein_coding CG8478-S2-modencode_R2_peak_2841 chrX 6125965 6126277 + 23 NA TTS (FBgn0262730) protein_coding-TTS (FBgn0262730) -5229 FBgn0029851 FBgn0029851 FBtr0112954 CG14445 protein_coding CG8478-S2-modencode_R2_peak_2001 chr3R 7818960 7819191 + 23 NA promoter-TSS (FBgn0260745) protein_coding-promoter-TSS (FBgn0260745) -3351 FBgn0260745 FBgn0260745 FBtr0306696 mfas protein_coding CG8478-S2-modencode_R2_peak_1412 chr3L 8051386 8052126 + 23 NA promoter-TSS (FBgn0026263) protein_coding-promoter-TSS (FBgn0026263) 1640 FBgn0052358 FBgn0052358 FBtr0076744 tRNA:CR32358 tRNA CG8478-S2-modencode_R2_peak_2618 chrUextra 3094549 3094673 + 22 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1659 chr3L 17950888 17951903 + 22 NA intron (FBgn0000568, intron 6 of 7) protein_coding-intron (FBgn0000568, intron 4 of 5) 24263 FBgn0262793 FBgn0262793 FBtr0305909 CG43174 protein_coding CG8478-S2-modencode_R2_peak_1219 chr3L 633059 635762 + 22 NA exon (FBgn0263039, exon 1 of 1) ncRNA-exon (FBgn0263039, exon 1 of 1) 3631 FBgn0263342 FBgn0263342 FBtr0308776 CR43423 ncRNA CG8478-S2-modencode_R2_peak_2502 chr3R 26292336 26292436 + 22 NA TTS (FBgn0039774) protein_coding-TTS (FBgn0039774) 614 FBgn0039776 FBgn0039776 FBtr0085650 PH4alphaEFB protein_coding CG8478-S2-modencode_R2_peak_1210 chr3L 606643 607232 + 22 NA promoter-TSS (FBgn0016715) protein_coding-promoter-TSS (FBgn0016715) -368 FBgn0016715 FBgn0016715 FBtr0072561 Reg-2 protein_coding CG8478-S2-modencode_R2_peak_1333 chr3L 4108610 4108780 + 22 NA exon (FBgn0028484, exon 1 of 3) protein_coding-exon (FBgn0028484, exon 1 of 3) 509 FBgn0028484 FBgn0028484 FBtr0073211 Ack protein_coding CG8478-S2-modencode_R2_peak_2208 chr3R 15980479 15980667 + 22 NA Intergenic Intergenic -14585 FBgn0038774 FBgn0038774 FBtr0083866 CG5023 protein_coding CG8478-S2-modencode_R2_peak_3091 chrX 12560232 12560949 + 22 NA intron (FBgn0011837, intron 2 of 3) protein_coding-intron (FBgn0011837, intron 2 of 3) 7095 FBgn0053963 FBgn0053963 FBtr0100004 CR33963 ncRNA CG8478-S2-modencode_R2_peak_1942 chr3R 5754391 5754549 + 22 NA promoter-TSS (FBgn0263097) protein_coding-promoter-TSS (FBgn0263097) 54067 FBgn0263097 FBgn0263097 FBtr0114583 Glut4EF protein_coding CG8478-S2-modencode_R2_peak_309 chr2L 13514147 13514659 + 22 NA intron (FBgn0023407, intron 3 of 6) protein_coding-intron (FBgn0023407, intron 3 of 6) -13438 FBgn0053640 FBgn0053640 FBtr0332506 CG33640 protein_coding CG8478-S2-modencode_R2_peak_1902 chr3R 5052047 5053061 + 22 NA promoter-TSS (FBgn0003165) protein_coding-promoter-TSS (FBgn0003165) 13435 FBgn0000412 FBgn0000412 FBtr0301524 D1 protein_coding CG8478-S2-modencode_R2_peak_126 chr2L 5325027 5325607 + 22 NA intron (FBgn0031698, intron 1 of 5) protein_coding-intron (FBgn0031698, intron 1 of 5) 1366 FBgn0031698 FBgn0031698 FBtr0307040 Ncoa6 protein_coding CG8478-S2-modencode_R2_peak_425 chr2L 21250606 21251153 + 22 NA intron (FBgn0261239, intron 2 of 7) protein_coding-intron (FBgn0261239, intron 2 of 4) -10289 FBgn0021856 FBgn0021856 FBtr0081482 l(2)k14505 protein_coding CG8478-S2-modencode_R2_peak_1469 chr3L 9846310 9846393 + 22 NA intron (FBgn0004390, intron 1 of 4) protein_coding-intron (FBgn0004390, intron 1 of 4) 2034 FBgn0004390 FBgn0004390 FBtr0330168 Gap1 protein_coding CG8478-S2-modencode_R2_peak_66 chr2L 2163098 2163371 + 22 NA intron (FBgn0000097, intron 1 of 3) protein_coding-intron (FBgn0000097, intron 1 of 3) 7474 FBgn0031393 FBgn0031393 FBtr0077832 CG15382 protein_coding CG8478-S2-modencode_R2_peak_3212 chrX 16456244 16456589 + 22 NA exon (FBgn0030758, exon 2 of 2) protein_coding-exon (FBgn0030758, exon 2 of 2) -2360 FBgn0011826 FBgn0011826 FBtr0074294 Pp2B-14D protein_coding CG8478-S2-modencode_R2_peak_2995 chrX 10118484 10119227 + 22 NA intron (FBgn0085437, intron 5 of 12) protein_coding-intron (FBgn0085437, intron 5 of 13) 4712 FBgn0085437 FBgn0085437 FBtr0114584 CG34408 protein_coding CG8478-S2-modencode_R2_peak_1825 chr3R 2235983 2236934 + 22 NA intron (FBgn0264495, intron 2 of 9) protein_coding-intron (FBgn0264495, intron 2 of 8) 3879 FBgn0264495 FBgn0264495 FBtr0303788 gpp protein_coding CG8478-S2-modencode_R2_peak_335 chr2L 16271802 16271919 + 22 NA intron (FBgn0001994, intron 2 of 2) protein_coding-intron (FBgn0001994, intron 2 of 2) 9719 FBgn0028897 FBgn0028897 FBtr0080825 CG4935 protein_coding CG8478-S2-modencode_R2_peak_2298 chr3R 19159806 19160061 + 22 NA intron (FBgn0003118, intron 3 of 8) protein_coding-intron (FBgn0003118, intron 3 of 8) 11951 FBgn0003118 FBgn0003118 FBtr0089715 pnt protein_coding CG8478-S2-modencode_R2_peak_772 chr2R 8847607 8847742 + 22 NA Intergenic Intergenic 6613 FBgn0033787 FBgn0033787 FBtr0087792 CG13321 protein_coding CG8478-S2-modencode_R2_peak_2484 chr3R 26106089 26108011 + 22 NA intron (FBgn0010113, intron 1 of 5) protein_coding-intron (FBgn0010113, intron 1 of 5) 3394 FBgn0010113 FBgn0010113 FBtr0085620 hdc protein_coding CG8478-S2-modencode_R2_peak_858 chr2R 11632055 11632273 + 22 NA intron (FBgn0050089, intron 3 of 6) protein_coding-intron (FBgn0050089, intron 3 of 6) 17261 FBgn0050089 FBgn0050089 FBtr0087285 CG30089 protein_coding CG8478-S2-modencode_R2_peak_787 chr2R 9221138 9221310 + 22 NA Intergenic Intergenic -4278 FBgn0262391 FBgn0262391 FBtr0304273 mir-184 pre_miRNA CG8478-S2-modencode_R2_peak_3028 chrX 10428507 10430658 + 22 NA intron (FBgn0085443, intron 3 of 10) protein_coding-intron (FBgn0085443, intron 3 of 9) 31042 FBgn0030215 FBgn0030215 FBtr0310297 CG15296 protein_coding CG8478-S2-modencode_R2_peak_2326 chr3R 19925736 19925960 + 22 NA intron (FBgn0053100, intron 2 of 2) protein_coding-intron (FBgn0053100, intron 2 of 3) 5617 FBgn0013343 FBgn0013343 FBtr0084588 Syx1A protein_coding CG8478-S2-modencode_R2_peak_3155 chrX 14733768 14734445 + 22 NA promoter-TSS (FBgn0052590) protein_coding-promoter-TSS (FBgn0052590) 699 FBgn0264078 FBgn0264078 FBtr0300435 Flo-2 protein_coding CG8478-S2-modencode_R2_peak_3310 chrX 21239401 21239923 + 22 NA promoter-TSS (FBgn0024251) protein_coding-promoter-TSS (FBgn0024251) 21 FBgn0024251 FBgn0024251 FBtr0331744 bbx protein_coding CG8478-S2-modencode_R2_peak_52 chr2L 1692719 1692971 + 22 NA intron (FBgn0086758, intron 3 of 6) protein_coding-intron (FBgn0086758, intron 3 of 6) -12286 FBgn0011570 FBgn0011570 FBtr0331630 cpb protein_coding CG8478-S2-modencode_R2_peak_759 chr2R 8393499 8393948 + 22 NA intron (FBgn0045063, intron 1 of 5) protein_coding-intron (FBgn0045063, intron 1 of 5) 4588 FBgn0033748 FBgn0033748 FBtr0087945 vis protein_coding CG8478-S2-modencode_R2_peak_3206 chrX 16347889 16348005 + 22 NA TTS (FBgn0262734) protein_coding-TTS (FBgn0262734) 5237 FBgn0262734 FBgn0262734 FBtr0074281 Rbp2 protein_coding CG8478-S2-modencode_R2_peak_74 chr2L 2363742 2364889 + 22 NA promoter-TSS (FBgn0014010) protein_coding-promoter-TSS (FBgn0014010) -1279 FBgn0261647 FBgn0261647 FBtr0330666 Axud1 protein_coding CG8478-S2-modencode_R2_peak_1421 chr3L 8353966 8354213 + 22 NA promoter-TSS (FBgn0001248) protein_coding-promoter-TSS (FBgn0001248) -2049 FBgn0001248 FBgn0001248 FBtr0076671 Idh protein_coding CG8478-S2-modencode_R2_peak_1550 chr3L 13997891 13997983 + 22 NA intron (FBgn0036398, intron 2 of 7) protein_coding-intron (FBgn0036398, intron 2 of 7) 2710 FBgn0036398 FBgn0036398 FBtr0333050 CG9007 protein_coding CG8478-S2-modencode_R2_peak_2742 chrX 3308567 3308832 + 22 NA intron (FBgn0029657, intron 3 of 4) protein_coding-intron (FBgn0029657, intron 2 of 3) 12857 FBgn0052493 FBgn0052493 FBtr0070533 tRNA:CR32493 tRNA CG8478-S2-modencode_R2_peak_2176 chr3R 14237931 14238626 + 22 NA promoter-TSS (FBgn0038621) protein_coding-promoter-TSS (FBgn0038621) -925 FBgn0038621 FBgn0038621 FBtr0083654 CG10864 protein_coding CG8478-S2-modencode_R2_peak_1699 chr3L 18813441 18813556 + 22 NA promoter-TSS (FBgn0036815) protein_coding-promoter-TSS (FBgn0036815) 277 FBgn0036814 FBgn0036814 FBtr0332801 CG14073 protein_coding CG8478-S2-modencode_R2_peak_661 chr2R 6504871 6505425 + 22 NA promoter-TSS (FBgn0033538) protein_coding-promoter-TSS (FBgn0033538) -4560 FBgn0033538 FBgn0033538 FBtr0113063 CG11883 protein_coding CG8478-S2-modencode_R2_peak_267 chr2L 12365957 12366210 + 22 NA promoter-TSS (FBgn0262475) protein_coding-promoter-TSS (FBgn0262475) 9642 FBgn0032424 FBgn0032424 FBtr0080354 CG17010 protein_coding CG8478-S2-modencode_R2_peak_1156 chr2R 19600272 19602033 + 22 NA promoter-TSS (FBgn0034897) protein_coding-promoter-TSS (FBgn0034897) -273 FBgn0034897 FBgn0034897 FBtr0113114 Sesn protein_coding CG8478-S2-modencode_R2_peak_1776 chr3L 22940978 22942116 + 22 NA intron (FBgn0037207, intron 2 of 2) protein_coding-intron (FBgn0037207, intron 2 of 2) 2452 FBgn0037207 FBgn0037207 FBtr0078563 Mes2 protein_coding CG8478-S2-modencode_R2_peak_2899 chrX 7861667 7862260 + 22 NA exon (FBgn0003656, exon 1 of 11) protein_coding-exon (FBgn0003656, exon 1 of 11) 306 FBgn0003656 FBgn0003656 FBtr0071126 sws protein_coding CG8478-S2-modencode_R2_peak_1357 chr3L 5170322 5170460 + 22 NA intron (FBgn0052423, intron 3 of 11) protein_coding-intron (FBgn0052423, intron 3 of 10) 7506 FBgn0052423 FBgn0052423 FBtr0301599 shep protein_coding CG8478-S2-modencode_R2_peak_3084 chrX 12543549 12544409 + 22 NA intron (FBgn0030412, intron 14 of 22) protein_coding-intron (FBgn0030412, intron 14 of 22) -3837 FBgn0015024 FBgn0015024 FBtr0073682 CkIalpha protein_coding CG8478-S2-modencode_R2_peak_2153 chr3R 13275260 13275379 + 22 NA promoter-TSS (FBgn0000564) protein_coding-promoter-TSS (FBgn0000564) -69 FBgn0000564 FBgn0000564 FBtr0083444 Eh protein_coding CG8478-S2-modencode_R2_peak_2299 chr3R 19160289 19161337 + 22 NA intron (FBgn0003118, intron 3 of 8) protein_coding-intron (FBgn0003118, intron 3 of 8) 11071 FBgn0003118 FBgn0003118 FBtr0089715 pnt protein_coding CG8478-S2-modencode_R2_peak_614 chr2R 5987896 5988607 + 22 NA promoter-TSS (FBgn0004907) protein_coding-promoter-TSS (FBgn0004907) -1160 FBgn0033485 FBgn0033485 FBtr0088425 RpLP0-like protein_coding CG8478-S2-modencode_R2_peak_3299 chrX 20931635 20931904 + 22 NA exon (FBgn0031150, exon 2 of 7) protein_coding-exon (FBgn0031150, exon 2 of 7) 3846 FBgn0052512 FBgn0052512 FBtr0332847 CG32512 protein_coding CG8478-S2-modencode_R2_peak_2494 chr3R 26163704 26164332 + 22 NA intron (FBgn0010113, intron 2 of 5) protein_coding-intron (FBgn0010113, intron 2 of 5) -31659 FBgn0085329 FBgn0085329 FBtr0305269 CG34300 protein_coding CG8478-S2-modencode_R2_peak_1623 chr3L 16978780 16979057 + 22 NA promoter-TSS (FBgn0261547) protein_coding-promoter-TSS (FBgn0261547) 12661 FBgn0262189 FBgn0262189 FBtr0304208 mir-2500 pre_miRNA CG8478-S2-modencode_R2_peak_2372 chr3R 21709596 21709889 + 22 NA intron (FBgn0039381, intron 1 of 6) protein_coding-intron (FBgn0039381, intron 1 of 6) 2035 FBgn0039381 FBgn0039381 FBtr0084911 Sppl protein_coding CG8478-S2-modencode_R2_peak_1092 chr2R 17266555 17267158 + 22 NA exon (FBgn0000395, exon 1 of 7) protein_coding-exon (FBgn0000395, exon 1 of 7) 111 FBgn0000395 FBgn0000395 FBtr0071610 cv-2 protein_coding CG8478-S2-modencode_R2_peak_544 chr2R 3667481 3667999 + 22 NA intron (FBgn0050497, intron 1 of 2) protein_coding-intron (FBgn0050497, intron 1 of 2) 4971 FBgn0000337 FBgn0000337 FBtr0088931 cn protein_coding CG8478-S2-modencode_R2_peak_2227 chr3R 16782658 16782845 + 22 NA promoter-TSS (FBgn0002921) protein_coding-promoter-TSS (FBgn0002921) 8315 FBgn0002921 FBgn0002921 FBtr0089516 Atpalpha protein_coding CG8478-S2-modencode_R2_peak_1766 chr3L 22816018 22816454 + 22 NA intron (FBgn0027339, intron 1 of 5) protein_coding-intron (FBgn0027339, intron 2 of 6) 10252 FBgn0027339 FBgn0027339 FBtr0100184 jim protein_coding CG8478-S2-modencode_R2_peak_2402 chr3R 22060286 22060771 + 22 NA promoter-TSS (FBgn0261708) ncRNA-promoter-TSS (FBgn0261708) -519 FBgn0261708 FBgn0261708 FBtr0303214 CR42745 ncRNA CG8478-S2-modencode_R2_peak_1368 chr3L 5800814 5801227 + 22 NA intron (FBgn0015806, intron 2 of 9) protein_coding-intron (FBgn0015806, intron 2 of 9) 3011 FBgn0015806 FBgn0015806 FBtr0077114 S6k protein_coding CG8478-S2-modencode_R2_peak_2579 chr4 1277136 1277220 + 22 NA Intergenic Intergenic 42615 FBgn0053653 FBgn0053653 FBtr0307334 Caps protein_coding CG8478-S2-modencode_R2_peak_279 chr2L 12495043 12495687 + 22 NA intron (FBgn0259176, intron 5 of 6) protein_coding-intron (FBgn0259176, intron 6 of 7) 1968 FBgn0051858 FBgn0051858 FBtr0080381 t-cup protein_coding CG8478-S2-modencode_R2_peak_369 chr2L 18576394 18576479 + 22 NA Intergenic Intergenic -4788 FBgn0085370 FBgn0085370 FBtr0303162 Pde11 protein_coding CG8478-S2-modencode_R2_peak_1441 chr3L 8947420 8948042 + 22 NA promoter-TSS (FBgn0040321) protein_coding-promoter-TSS (FBgn0040321) -390 FBgn0040321 FBgn0040321 FBtr0076510 GNBP3 protein_coding CG8478-S2-modencode_R2_peak_2695 chrX 2190736 2191020 + 22 NA intron (FBgn0003079, intron 2 of 5) protein_coding-intron (FBgn0003079, intron 2 of 5) 961 FBgn0003079 FBgn0003079 FBtr0111025 phl protein_coding CG8478-S2-modencode_R2_peak_657 chr2R 6488672 6488922 + 22 NA intron (FBgn0263102, intron 1 of 6) protein_coding-intron (FBgn0263102, intron 3 of 9) -20911 FBgn0033538 FBgn0033538 FBtr0113063 CG11883 protein_coding CG8478-S2-modencode_R2_peak_737 chr2R 7492099 7492862 + 22 NA promoter-TSS (FBgn0033636) protein_coding-promoter-TSS (FBgn0033636) -39 FBgn0033636 FBgn0033636 FBtr0088094 tou protein_coding CG8478-S2-modencode_R2_peak_1647 chr3L 17605412 17605746 + 22 NA intron (FBgn0000567, intron 1 of 7) protein_coding-intron (FBgn0000567, intron 1 of 7) 6846 FBgn0000567 FBgn0000567 FBtr0075204 Eip74EF protein_coding CG8478-S2-modencode_R2_peak_1638 chr3L 17565472 17565542 + 22 NA intron (FBgn0000567, intron 5 of 7) protein_coding-intron (FBgn0000567, intron 5 of 7) -6245 FBgn0086080 FBgn0086080 FBtr0114356 snoRNA:Me28S-A576 snoRNA CG8478-S2-modencode_R2_peak_1534 chr3L 12258974 12259473 + 22 NA intron (FBgn0260941, intron 1 of 9) protein_coding-intron (FBgn0260941, intron 1 of 9) -1405 FBgn0052100 FBgn0052100 FBtr0076006 CG32100 protein_coding CG8478-S2-modencode_R2_peak_1692 chr3L 18781124 18781306 + 22 NA intron (FBgn0001078, intron 2 of 9) protein_coding-intron (FBgn0001078, intron 2 of 9) -22371 FBgn0001078 FBgn0001078 FBtr0075087 ftz-f1 protein_coding CG8478-S2-modencode_R2_peak_458 chr2R 1609826 1609957 + 22 NA intron (FBgn0000099, intron 1 of 7) protein_coding-intron (FBgn0000099, intron 1 of 7) -5337 FBgn0000099 FBgn0000099 FBtr0300504 ap protein_coding CG8478-S2-modencode_R2_peak_2649 chrX 1170524 1171244 + 22 NA Intergenic Intergenic -2202 FBgn0028550 FBgn0028550 FBtr0330391 Atf3 protein_coding CG8478-S2-modencode_R2_peak_1096 chr2R 17367923 17368629 + 22 NA intron (FBgn0010415, intron 1 of 6) protein_coding-intron (FBgn0010415, intron 1 of 5) -1158 FBgn0026369 FBgn0026369 FBtr0071642 Sara protein_coding CG8478-S2-modencode_R2_peak_115 chr2L 5021590 5021881 + 22 NA intron (FBgn0016075, intron 2 of 8) protein_coding-intron (FBgn0016075, intron 2 of 8) 5710 FBgn0016075 FBgn0016075 FBtr0333541 vkg protein_coding CG8478-S2-modencode_R2_peak_715 chr2R 7091750 7092047 + 22 NA promoter-TSS (FBgn0003396) protein_coding-promoter-TSS (FBgn0003396) 14871 FBgn0033582 FBgn0033582 FBtr0330635 CG9084 protein_coding CG8478-S2-modencode_R2_peak_2317 chr3R 19748129 19748435 + 22 NA promoter-TSS (FBgn0051141) protein_coding-promoter-TSS (FBgn0051141) 413 FBgn0016754 FBgn0016754 FBtr0330380 sba protein_coding CG8478-S2-modencode_R2_peak_586 chr2R 5442222 5442697 + 22 NA Intergenic Intergenic 1152 FBgn0262447 FBgn0262447 FBtr0304459 mir-14 pre_miRNA CG8478-S2-modencode_R2_peak_419 chr2L 21042161 21042330 + 22 NA intron (FBgn0250867, intron 2 of 6) protein_coding-intron (FBgn0250867, intron 1 of 1) -10788 FBgn0010395 FBgn0010395 FBtr0081461 betaInt-nu protein_coding CG8478-S2-modencode_R2_peak_907 chr2R 12743665 12744662 + 22 NA promoter-TSS (FBgn0026533) protein_coding-promoter-TSS (FBgn0026533) 437 FBgn0026533 FBgn0026533 FBtr0100437 Dek protein_coding CG8478-S2-modencode_R2_peak_1100 chr2R 17394786 17395405 + 22 NA exon (FBgn0043070, exon 2 of 7) protein_coding-exon (FBgn0043070, exon 2 of 7) 5493 FBgn0043070 FBgn0043070 FBtr0089706 MESK2 protein_coding CG8478-S2-modencode_R2_peak_611 chr2R 5966339 5966471 + 22 NA exon (FBgn0033483, exon 1 of 7) protein_coding-exon (FBgn0033483, exon 1 of 7) 535 FBgn0033483 FBgn0033483 FBtr0088405 egr protein_coding CG8478-S2-modencode_R2_peak_533 chr2R 3580477 3580578 + 22 NA intron (FBgn0033212, intron 1 of 18) protein_coding-intron (FBgn0033212, intron 1 of 18) 5880 FBgn0033212 FBgn0033212 FBtr0088940 CG1399 protein_coding CG8478-S2-modencode_R2_peak_3022 chrX 10390432 10390823 + 22 NA TTS (FBgn0085443) protein_coding-TTS (FBgn0085443) -9967 FBgn0052687 FBgn0052687 FBtr0071458 CG32687 protein_coding CG8478-S2-modencode_R2_peak_1490 chr3L 10732155 10732908 + 22 NA Intergenic Intergenic -32561 FBgn0262890 FBgn0262890 FBtr0306304 CG43245 protein_coding CG8478-S2-modencode_R2_peak_1827 chr3R 2508950 2509190 + 22 NA Intergenic Intergenic -1102 FBgn0000552 FBgn0000552 FBtr0081688 Edg84A protein_coding CG8478-S2-modencode_R2_peak_569 chr2R 4495670 4495881 + 21 NA exon (FBgn0033310, exon 2 of 5) protein_coding-exon (FBgn0033310, exon 2 of 5) 5885 FBgn0033312 FBgn0033312 FBtr0310502 CG8642 protein_coding CG8478-S2-modencode_R2_peak_1554 chr3L 14051380 14051760 + 21 NA intron (FBgn0052138, intron 1 of 9) protein_coding-intron (FBgn0052138, intron 1 of 8) 4774 FBgn0052138 FBgn0052138 FBtr0334053 CG32138 protein_coding CG8478-S2-modencode_R2_peak_1925 chr3R 5254962 5255251 + 21 NA intron (FBgn0261552, intron 1 of 5) protein_coding-intron (FBgn0261552, intron 2 of 7) 11442 FBgn0261552 FBgn0261552 FBtr0302691 ps protein_coding CG8478-S2-modencode_R2_peak_2983 chrX 9623277 9623516 + 21 NA promoter-TSS (FBgn0020378) protein_coding-promoter-TSS (FBgn0020378) -285 FBgn0020378 FBgn0020378 FBtr0331335 Sp1 protein_coding CG8478-S2-modencode_R2_peak_1640 chr3L 17570025 17570286 + 21 NA promoter-TSS (FBgn0000567) protein_coding-promoter-TSS (FBgn0000567) -10893 FBgn0086080 FBgn0086080 FBtr0114356 snoRNA:Me28S-A576 snoRNA CG8478-S2-modencode_R2_peak_2999 chrX 10184741 10184861 + 21 NA promoter-TSS (FBgn0259170) protein_coding-promoter-TSS (FBgn0259170) -694 FBgn0259170 FBgn0259170 FBtr0300511 alpha-Man-I protein_coding CG8478-S2-modencode_R2_peak_1676 chr3L 18050190 18050268 + 21 NA intron (FBgn0000568, intron 3 of 7) protein_coding-intron (FBgn0000568, intron 1 of 5) 7567 FBgn0000568 FBgn0000568 FBtr0075151 Eip75B protein_coding CG8478-S2-modencode_R2_peak_1445 chr3L 9065371 9065541 + 21 NA promoter-TSS (FBgn0035960) protein_coding-promoter-TSS (FBgn0035960) 375 FBgn0035959 FBgn0035959 FBtr0331549 CG4911 protein_coding CG8478-S2-modencode_R2_peak_2219 chr3R 16607425 16607951 + 21 NA intron (FBgn0038826, intron 1 of 10) protein_coding-intron (FBgn0038826, intron 2 of 11) -9365 FBgn0046689 FBgn0046689 FBtr0083996 Takl1 protein_coding CG8478-S2-modencode_R2_peak_257 chr2L 11061267 11061585 + 21 NA intron (FBgn0032330, intron 1 of 6) protein_coding-intron (FBgn0032330, intron 1 of 6) 5571 FBgn0032330 FBgn0032330 FBtr0331198 Samuel protein_coding CG8478-S2-modencode_R2_peak_3218 chrX 16674459 16674530 + 21 NA intron (FBgn0001250, intron 1 of 10) protein_coding-intron (FBgn0001250, intron 1 of 11) 613 FBgn0001250 FBgn0001250 FBtr0301354 if protein_coding CG8478-S2-modencode_R2_peak_3231 chrX 17545798 17546684 + 21 NA promoter-TSS (FBgn0026375) protein_coding-promoter-TSS (FBgn0026375) 354 FBgn0026375 FBgn0026375 FBtr0074481 RhoGAPp190 protein_coding CG8478-S2-modencode_R2_peak_143 chr2L 6473348 6473578 + 21 NA TTS (FBgn0031818) protein_coding-TTS (FBgn0031818) -1393 FBgn0259749 FBgn0259749 FBtr0079269 mmy protein_coding CG8478-S2-modencode_R2_peak_2457 chr3R 25417722 25417900 + 21 NA exon (FBgn0086361, exon 1 of 6) protein_coding-exon (FBgn0086361, exon 1 of 6) 179 FBgn0086361 FBgn0086361 FBtr0085446 alph protein_coding CG8478-S2-modencode_R2_peak_1745 chr3L 21232984 21233354 + 21 NA promoter-TSS (FBgn0004865) protein_coding-promoter-TSS (FBgn0004865) 13460 FBgn0004865 FBgn0004865 FBtr0078307 Eip78C protein_coding CG8478-S2-modencode_R2_peak_2222 chr3R 16654817 16655086 + 21 NA intron (FBgn0027493, intron 1 of 5) protein_coding-intron (FBgn0027493, intron 1 of 4) 1386 FBgn0027493 FBgn0027493 FBtr0310504 CG17273 protein_coding CG8478-S2-modencode_R2_peak_2336 chr3R 20098279 20099019 + 21 NA promoter-TSS (FBgn0086365) protein_coding-promoter-TSS (FBgn0086365) -104 FBgn0086365 FBgn0086365 FBtr0084598 Orct2 protein_coding CG8478-S2-modencode_R2_peak_2599 chrU 5295508 5295689 + 21 NA NA NA NA NA CG8478-S2-modencode_R2_peak_2958 chrX 9475933 9476060 + 21 NA Intergenic Intergenic -1988 FBgn0052699 FBgn0052699 FBtr0071369 CG32699 protein_coding CG8478-S2-modencode_R2_peak_1888 chr3R 4647361 4647543 + 21 NA promoter-TSS (FBgn0040532) protein_coding-promoter-TSS (FBgn0040532) -278 FBgn0040532 FBgn0040532 FBtr0305188 CG8369 protein_coding CG8478-S2-modencode_R2_peak_1373 chr3L 6210830 6211830 + 21 NA promoter-TSS (FBgn0002526) protein_coding-promoter-TSS (FBgn0002526) -208 FBgn0002526 FBgn0002526 FBtr0077014 LanA protein_coding CG8478-S2-modencode_R2_peak_2626 chrUextra 17985692 17985762 + 21 NA NA NA NA NA CG8478-S2-modencode_R2_peak_2297 chr3R 19159263 19159481 + 21 NA intron (FBgn0003118, intron 3 of 8) protein_coding-intron (FBgn0003118, intron 3 of 8) 12512 FBgn0003118 FBgn0003118 FBtr0089715 pnt protein_coding CG8478-S2-modencode_R2_peak_344 chr2L 16543342 16543439 + 21 NA TTS (FBgn0051816) protein_coding-TTS (FBgn0051816) 844 FBgn0051816 FBgn0051816 FBtr0080868 CG31816 protein_coding CG8478-S2-modencode_R2_peak_1533 chr3L 12117239 12117661 + 21 NA intron (FBgn0022959, intron 1 of 2) protein_coding-intron (FBgn0022959, intron 1 of 3) 800 FBgn0022959 FBgn0022959 FBtr0076027 yps protein_coding CG8478-S2-modencode_R2_peak_2268 chr3R 18182828 18183278 + 21 NA exon (FBgn0038947, exon 1 of 4) protein_coding-exon (FBgn0038947, exon 1 of 4) 646 FBgn0038947 FBgn0038947 FBtr0084209 sar1 protein_coding CG8478-S2-modencode_R2_peak_1109 chr2R 17593408 17593835 + 21 NA Intergenic Intergenic -3208 FBgn0010228 FBgn0010228 FBtr0071674 HmgZ protein_coding CG8478-S2-modencode_R2_peak_1859 chr3R 3635956 3636142 + 21 NA promoter-TSS (FBgn0051472) protein_coding-promoter-TSS (FBgn0051472) -205 FBgn0051472 FBgn0051472 FBtr0081747 CG31472 protein_coding CG8478-S2-modencode_R2_peak_1487 chr3L 10690434 10690725 + 21 NA promoter-TSS (FBgn0036101) protein_coding-promoter-TSS (FBgn0036101) -602 FBgn0036101 FBgn0036101 FBtr0089571 NijA protein_coding CG8478-S2-modencode_R2_peak_3128 chrX 13022964 13023114 + 21 NA promoter-TSS (FBgn0030451) protein_coding-promoter-TSS (FBgn0030451) -14 FBgn0030451 FBgn0030451 FBtr0073723 CG15717 protein_coding CG8478-S2-modencode_R2_peak_1483 chr3L 10651517 10651848 + 21 NA intron (FBgn0052066, intron 1 of 3) protein_coding-intron (FBgn0052066, intron 2 of 4) 1399 FBgn0052066 FBgn0052066 FBtr0076277 CG32066 protein_coding CG8478-S2-modencode_R2_peak_883 chr2R 12067998 12068125 + 21 NA promoter-TSS (FBgn0015754) protein_coding-promoter-TSS (FBgn0015754) 1730 FBgn0015754 FBgn0015754 FBtr0087241 Lis-1 protein_coding CG8478-S2-modencode_R2_peak_1913 chr3R 5168961 5169108 + 21 NA intron (FBgn0263749, intron 2 of 5) protein_coding-intron (FBgn0263749, intron 1 of 4) 1439 FBgn0263749 FBgn0263749 FBtr0310401 CG43674 protein_coding CG8478-S2-modencode_R2_peak_1754 chr3L 21762525 21762674 + 21 NA promoter-TSS (FBgn0037133) protein_coding-promoter-TSS (FBgn0037133) -316 FBgn0037133 FBgn0037133 FBtr0078436 CG7370 protein_coding CG8478-S2-modencode_R2_peak_2606 chrU 6290827 6291020 + 21 NA NA NA NA NA CG8478-S2-modencode_R2_peak_713 chr2R 7089863 7090443 + 21 NA intron (FBgn0003396, intron 1 of 6) protein_coding-intron (FBgn0003396, intron 2 of 7) 16616 FBgn0033582 FBgn0033582 FBtr0330635 CG9084 protein_coding CG8478-S2-modencode_R2_peak_527 chr2R 3502476 3502627 + 21 NA promoter-TSS (FBgn0033196) protein_coding-promoter-TSS (FBgn0033196) 5665 FBgn0033196 FBgn0033196 FBtr0088950 CG1358 protein_coding CG8478-S2-modencode_R2_peak_3288 chrX 19918583 19918823 + 21 NA promoter-TSS (FBgn0052826) tRNA-promoter-TSS (FBgn0052826) -429 FBgn0052826 FBgn0052826 FBtr0070001 tRNA:CR32826 tRNA CG8478-S2-modencode_R2_peak_1685 chr3L 18611324 18611457 + 21 NA promoter-TSS (FBgn0052200) tRNA-promoter-TSS (FBgn0052200) -100 FBgn0052200 FBgn0052200 FBtr0075107 tRNA:CR32200 tRNA CG8478-S2-modencode_R2_peak_2006 chr3R 8195229 8195343 + 21 NA promoter-TSS (FBgn0001149) protein_coding-promoter-TSS (FBgn0001149) -869 FBgn0001149 FBgn0001149 FBtr0082607 GstD1 protein_coding CG8478-S2-modencode_R2_peak_688 chr2R 6979528 6979821 + 21 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -5530 FBgn0262818 FBgn0262818 FBtr0306050 CG43189 protein_coding CG8478-S2-modencode_R2_peak_908 chr2R 12892137 12892221 + 21 NA promoter-TSS (FBgn0034179) protein_coding-promoter-TSS (FBgn0034179) 479 FBgn0026402 FBgn0026402 FBtr0087058 NiPp1 protein_coding CG8478-S2-modencode_R2_peak_1752 chr3L 21469740 21469997 + 21 NA promoter-TSS (FBgn0014143) protein_coding-promoter-TSS (FBgn0014143) -289 FBgn0014143 FBgn0014143 FBtr0078395 croc protein_coding CG8478-S2-modencode_R2_peak_2817 chrX 4977615 4978416 + 21 NA promoter-TSS (FBgn0052767) protein_coding-promoter-TSS (FBgn0052767) -957 FBgn0052767 FBgn0052767 FBtr0300994 CG32767 protein_coding CG8478-S2-modencode_R2_peak_1242 chr3L 1033888 1034805 + 21 NA promoter-TSS (FBgn0035181) protein_coding-promoter-TSS (FBgn0035181) -839 FBgn0035181 FBgn0035181 FBtr0072622 CG9205 protein_coding CG8478-S2-modencode_R2_peak_2613 chrUextra 439389 439623 + 21 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1516 chr3L 11284188 11284746 + 21 NA exon (FBgn0036152, exon 2 of 4) protein_coding-exon (FBgn0036152, exon 2 of 4) 4552 FBgn0036152 FBgn0036152 FBtr0076183 CG6175 protein_coding CG8478-S2-modencode_R2_peak_1633 chr3L 17526580 17527056 + 21 NA promoter-TSS (FBgn0259174) protein_coding-promoter-TSS (FBgn0259174) 3637 FBgn0259174 FBgn0259174 FBtr0299642 Nedd4 protein_coding CG8478-S2-modencode_R2_peak_926 chr2R 13323929 13323999 + 21 NA intron (FBgn0027506, intron 1 of 5) protein_coding-intron (FBgn0027506, intron 1 of 5) -4145 FBgn0034218 FBgn0034218 FBtr0086918 CG18467 protein_coding CG8478-S2-modencode_R2_peak_1122 chr2R 18100405 18100699 + 21 NA TTS (FBgn0034713) protein_coding-TTS (FBgn0034713) 206 FBgn0025186 FBgn0025186 FBtr0071774 ari-2 protein_coding CG8478-S2-modencode_R2_peak_504 chr2R 2758991 2760128 + 21 NA intron (FBgn0033109, intron 1 of 6) protein_coding-intron (FBgn0033109, intron 1 of 6) 715 FBgn0033109 FBgn0033109 FBtr0086208 coro protein_coding CG8478-S2-modencode_R2_peak_2688 chrX 2163971 2164093 + 21 NA intron (FBgn0023528, intron 1 of 8) protein_coding-intron (FBgn0023528, intron 1 of 8) 680 FBgn0023528 FBgn0023528 FBtr0300793 CG2924 protein_coding CG8478-S2-modencode_R2_peak_3207 chrX 16350585 16350756 + 21 NA Intergenic Intergenic 7960 FBgn0262734 FBgn0262734 FBtr0074281 Rbp2 protein_coding CG8478-S2-modencode_R2_peak_2652 chrX 1275356 1276050 + 21 NA intron (FBgn0052813, intron 1 of 4) protein_coding-intron (FBgn0052813, intron 1 of 3) -1194 FBgn0024986 FBgn0024986 FBtr0070233 CG3719 protein_coding CG8478-S2-modencode_R2_peak_2192 chr3R 14743582 14744228 + 21 NA promoter-TSS (FBgn0261113) protein_coding-promoter-TSS (FBgn0261113) -306 FBgn0261113 FBgn0261113 FBtr0083703 Xrp1 protein_coding CG8478-S2-modencode_R2_peak_2957 chrX 9473106 9473703 + 21 NA intron (FBgn0052699, intron 1 of 7) protein_coding-intron (FBgn0052699, intron 1 of 6) 604 FBgn0052699 FBgn0052699 FBtr0071369 CG32699 protein_coding CG8478-S2-modencode_R2_peak_2835 chrX 5795786 5796134 + 21 NA promoter-TSS (FBgn0000042) protein_coding-promoter-TSS (FBgn0000042) 1066 FBgn0000042 FBgn0000042 FBtr0070823 Act5C protein_coding CG8478-S2-modencode_R2_peak_467 chr2R 2007658 2008592 + 21 NA intron (FBgn0000546, intron 4 of 7) protein_coding-intron (FBgn0000546, intron 3 of 6) 11221 FBgn0000546 FBgn0000546 FBtr0086011 EcR protein_coding CG8478-S2-modencode_R2_peak_1455 chr3L 9607671 9608190 + 21 NA promoter-TSS (FBgn0002528) protein_coding-promoter-TSS (FBgn0002528) -84 FBgn0002528 FBgn0002528 FBtr0076382 LanB2 protein_coding CG8478-S2-modencode_R2_peak_1656 chr3L 17940404 17940568 + 21 NA Intergenic Intergenic 13354 FBgn0262793 FBgn0262793 FBtr0305909 CG43174 protein_coding CG8478-S2-modencode_R2_peak_327 chr2L 15339519 15339906 + 21 NA Intergenic Intergenic 5848 FBgn0001981 FBgn0001981 FBtr0080734 esg protein_coding CG8478-S2-modencode_R2_peak_620 chr2R 6098461 6098561 + 21 NA intron (FBgn0000448, intron 1 of 8) protein_coding-intron (FBgn0000448, intron 1 of 8) -11315 FBgn0085250 FBgn0085250 FBtr0299834 CG34221 protein_coding CG8478-S2-modencode_R2_peak_99 chr2L 4118623 4119316 + 21 NA Intergenic Intergenic -1394 FBgn0020376 FBgn0020376 FBtr0077466 Sr-CIII protein_coding CG8478-S2-modencode_R2_peak_1317 chr3L 3450113 3451049 + 21 NA intron (FBgn0026259, intron 4 of 8) protein_coding-intron (FBgn0026259, intron 4 of 8) 10396 FBgn0026259 FBgn0026259 FBtr0073144 eIF5B protein_coding CG8478-S2-modencode_R2_peak_676 chr2R 6958060 6958609 + 21 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -14757 FBgn0262817 FBgn0262817 FBtr0306049 CG43188 protein_coding CG8478-S2-modencode_R2_peak_2760 chrX 3612635 3613093 + 21 NA intron (FBgn0015286, intron 1 of 6) protein_coding-intron (FBgn0015286, intron 1 of 4) 801 FBgn0015286 FBgn0015286 FBtr0070584 Rala protein_coding CG8478-S2-modencode_R2_peak_2791 chrX 4001096 4001415 + 21 NA intron (FBgn0026084, intron 1 of 3) protein_coding-intron (FBgn0026084, intron 1 of 3) -1727 FBgn0026084 FBgn0026084 FBtr0307206 cib protein_coding CG8478-S2-modencode_R2_peak_1027 chr2R 15141502 15141754 + 21 NA promoter-TSS (FBgn0053453) protein_coding-promoter-TSS (FBgn0053453) -938 FBgn0053453 FBgn0053453 FBtr0086564 CG33453 protein_coding CG8478-S2-modencode_R2_peak_1274 chr3L 2820633 2821267 + 21 NA exon (FBgn0263392, exon 1 of 7) protein_coding-exon (FBgn0263392, exon 1 of 7) 38695 FBgn0035375 FBgn0035375 FBtr0333442 pgant6 protein_coding CG8478-S2-modencode_R2_peak_886 chr2R 12098064 12098249 + 21 NA promoter-TSS (FBgn0034091) protein_coding-promoter-TSS (FBgn0034091) -2945 FBgn0050237 FBgn0050237 FBtr0087198 tRNA:CR30237 tRNA CG8478-S2-modencode_R2_peak_2361 chr3R 21297811 21298719 + 21 NA promoter-TSS (FBgn0039335) protein_coding-promoter-TSS (FBgn0039335) 513 FBgn0004509 FBgn0004509 FBtr0310618 Fur1 protein_coding CG8478-S2-modencode_R2_peak_2901 chrX 7943469 7943541 + 21 NA TTS (FBgn0004656) protein_coding-TTS (FBgn0004656) 8886 FBgn0004656 FBgn0004656 FBtr0301309 fs(1)h protein_coding CG8478-S2-modencode_R2_peak_2101 chr3R 11868246 11868477 + 21 NA promoter-TSS (FBgn0038394) protein_coding-promoter-TSS (FBgn0038394) -884 FBgn0038394 FBgn0038394 FBtr0083222 CG10264 protein_coding CG8478-S2-modencode_R2_peak_3106 chrX 12622853 12623828 + 21 NA intron (FBgn0264678, intron 1 of 1) protein_coding-intron (FBgn0263865, intron 2 of 9) -10847 FBgn0264678 FBgn0264678 FBtr0333775 CR43963 ncRNA CG8478-S2-modencode_R2_peak_3082 chrX 12534965 12535200 + 21 NA intron (FBgn0030412, intron 14 of 23) protein_coding-intron (FBgn0030412, intron 13 of 22) 4653 FBgn0262187 FBgn0262187 FBtr0304204 mir-970 pre_miRNA CG8478-S2-modencode_R2_peak_871 chr2R 11982984 11983342 + 21 NA intron (FBgn0034072, intron 1 of 14) protein_coding-intron (FBgn0034072, intron 1 of 13) 2882 FBgn0034072 FBgn0034072 FBtr0087258 Dg protein_coding CG8478-S2-modencode_R2_peak_1657 chr3L 17942216 17942571 + 21 NA Intergenic Intergenic 15261 FBgn0262793 FBgn0262793 FBtr0305909 CG43174 protein_coding CG8478-S2-modencode_R2_peak_1845 chr3R 2948282 2948944 + 21 NA intron (FBgn0261238, intron 1 of 9) protein_coding-intron (FBgn0261238, intron 1 of 9) -1659 FBgn0037472 FBgn0037472 FBtr0081563 CG10098 protein_coding CG8478-S2-modencode_R2_peak_1672 chr3L 18009420 18010003 + 21 NA intron (FBgn0000568, intron 3 of 7) protein_coding-intron (FBgn0000568, intron 1 of 5) -13533 FBgn0086081 FBgn0086081 FBtr0114357 snoRNA:Me28S-A30 snoRNA CG8478-S2-modencode_R2_peak_2450 chr3R 25108515 25109008 + 21 NA Intergenic Intergenic 14190 FBgn0039659 FBgn0039659 FBtr0085439 CG14506 protein_coding CG8478-S2-modencode_R2_peak_196 chr2L 8419433 8419742 + 21 NA promoter-TSS (FBgn0027932) protein_coding-promoter-TSS (FBgn0027932) 3897 FBgn0027932 FBgn0027932 FBtr0079666 Akap200 protein_coding CG8478-S2-modencode_R2_peak_412 chr2L 20800613 20800850 + 21 NA intron (FBgn0032886, intron 1 of 2) protein_coding-intron (FBgn0032886, intron 1 of 2) -3691 FBgn0250785 FBgn0250785 FBtr0089946 vari protein_coding CG8478-S2-modencode_R2_peak_3270 chrX 19388535 19388614 + 21 NA promoter-TSS (FBgn0027621) protein_coding-promoter-TSS (FBgn0027621) -140 FBgn0031022 FBgn0031022 FBtr0074783 CG12204 protein_coding CG8478-S2-modencode_R2_peak_904 chr2R 12717949 12718106 + 21 NA promoter-TSS (FBgn0262432) pre_miRNA-promoter-TSS (FBgn0262432) -168 FBgn0263659 FBgn0263659 FBtr0310103 CR43650 ncRNA CG8478-S2-modencode_R2_peak_2882 chrX 7588823 7590032 + 21 NA promoter-TSS (FBgn0029504) protein_coding-promoter-TSS (FBgn0029504) -476 FBgn0029504 FBgn0029504 FBtr0071079 CHES-1-like protein_coding CG8478-S2-modencode_R2_peak_739 chr2R 7501615 7502190 + 21 NA intron (FBgn0033636, intron 1 of 16) protein_coding-intron (FBgn0033636, intron 1 of 16) -1798 FBgn0264508 FBgn0264508 FBtr0333069 CR43907 ncRNA CG8478-S2-modencode_R2_peak_3184 chrX 15638048 15638119 + 21 NA exon (FBgn0030680, exon 2 of 2) protein_coding-exon (FBgn0030680, exon 2 of 2) 2157 FBgn0030680 FBgn0030680 FBtr0074201 CG8944 protein_coding CG8478-S2-modencode_R2_peak_272 chr2L 12474711 12474944 + 20 NA intron (FBgn0259176, intron 2 of 2) protein_coding-intron (FBgn0259176, intron 2 of 2) -14737 FBgn0262203 FBgn0262203 FBtr0304239 mir-967 pre_miRNA CG8478-S2-modencode_R2_peak_3237 chrX 17780634 17780796 + 20 NA exon (FBgn0259168, exon 1 of 9) protein_coding-exon (FBgn0259168, exon 1 of 9) -1495 FBgn0030880 FBgn0030880 FBtr0074495 CG6788 protein_coding CG8478-S2-modencode_R2_peak_3238 chrX 18031334 18031616 + 20 NA promoter-TSS (FBgn0017418) protein_coding-promoter-TSS (FBgn0017418) 243 FBgn0017418 FBgn0017418 FBtr0089507 ari-1 protein_coding CG8478-S2-modencode_R2_peak_1892 chr3R 4757687 4757830 + 20 NA promoter-TSS (FBgn0262614) protein_coding-promoter-TSS (FBgn0262614) -3095 FBgn0003015 FBgn0003015 FBtr0081956 osk protein_coding CG8478-S2-modencode_R2_peak_1486 chr3L 10674817 10675443 + 20 NA intron (FBgn0010762, intron 1 of 8) protein_coding-intron (FBgn0010762, intron 2 of 9) -8994 FBgn0036099 FBgn0036099 FBtr0076265 CG11811 protein_coding CG8478-S2-modencode_R2_peak_1015 chr2R 15013826 15013901 + 20 NA intron (FBgn0034417, intron 1 of 8) protein_coding-intron (FBgn0034417, intron 1 of 8) 861 FBgn0034417 FBgn0034417 FBtr0100129 CG15117 protein_coding CG8478-S2-modencode_R2_peak_782 chr2R 9059057 9059202 + 20 NA TTS (FBgn0086532) protein_coding-TTS (FBgn0086532) 221 FBgn0053138 FBgn0053138 FBtr0310496 CG33138 protein_coding CG8478-S2-modencode_R2_peak_1217 chr3L 629022 630166 + 20 NA exon (FBgn0263039, exon 1 of 1) ncRNA-exon (FBgn0263039, exon 1 of 1) 1124 FBgn0263039 FBgn0263039 FBtr0333724 CR43334 ncRNA CG8478-S2-modencode_R2_peak_1278 chr3L 3071743 3071908 + 20 NA promoter-TSS (FBgn0035397) protein_coding-promoter-TSS (FBgn0035397) -986 FBgn0052486 FBgn0052486 FBtr0073004 CG32486 protein_coding CG8478-S2-modencode_R2_peak_915 chr2R 13027760 13028117 + 20 NA promoter-TSS (FBgn0262563) protein_coding-promoter-TSS (FBgn0262563) 446 FBgn0262567 FBgn0262567 FBtr0304890 CG43107 protein_coding CG8478-S2-modencode_R2_peak_3149 chrX 13885041 13885119 + 20 NA Intergenic Intergenic -5193 FBgn0263115 FBgn0263115 FBtr0112554 mamo protein_coding CG8478-S2-modencode_R2_peak_397 chr2L 19534690 19534849 + 20 NA promoter-TSS (FBgn0051697) protein_coding-promoter-TSS (FBgn0051697) -679 FBgn0051697 FBgn0051697 FBtr0081250 CG31697 protein_coding CG8478-S2-modencode_R2_peak_2722 chrX 3159799 3160192 + 20 NA intron (FBgn0000479, intron 3 of 15) protein_coding-intron (FBgn0000479, intron 4 of 14) 16461 FBgn0003374 FBgn0003374 FBtr0070524 Sgs4 protein_coding CG8478-S2-modencode_R2_peak_1258 chr3L 2418440 2419189 + 20 NA intron (FBgn0261551, intron 1 of 6) protein_coding-intron (FBgn0261551, intron 2 of 9) 859 FBgn0261551 FBgn0261551 FBtr0302675 CG42669 protein_coding CG8478-S2-modencode_R2_peak_779 chr2R 8922503 8923149 + 20 NA Intergenic Intergenic 11967 FBgn0033788 FBgn0033788 FBtr0087797 CG13323 protein_coding CG8478-S2-modencode_R2_peak_2500 chr3R 26286814 26287033 + 20 NA intron (FBgn0039774, intron 1 of 6) protein_coding-intron (FBgn0039774, intron 1 of 5) 1680 FBgn0039774 FBgn0039774 FBtr0085649 CDase protein_coding CG8478-S2-modencode_R2_peak_2586 chrM 4593 4770 + 20 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1834 chr3R 2675472 2675855 + 20 NA promoter-TSS (FBgn0003339) protein_coding-promoter-TSS (FBgn0003339) 40 FBgn0003339 FBgn0003339 FBtr0081657 Scr protein_coding CG8478-S2-modencode_R2_peak_1426 chr3L 8645158 8645247 + 20 NA Intergenic Intergenic 2631 FBgn0035922 FBgn0035922 FBtr0273328 Pex7 protein_coding CG8478-S2-modencode_R2_peak_1545 chr3L 13037651 13037977 + 20 NA promoter-TSS (FBgn0036341) protein_coding-promoter-TSS (FBgn0036341) 76 FBgn0036341 FBgn0036341 FBtr0332076 Syx13 protein_coding CG8478-S2-modencode_R2_peak_971 chr2R 14260382 14260495 + 20 NA Intergenic Intergenic -4554 FBgn0261700 FBgn0261700 FBtr0303193 CG42736 protein_coding CG8478-S2-modencode_R2_peak_1650 chr3L 17661133 17661205 + 20 NA TTS (FBgn0065088) ncRNA-TTS (FBgn0065088) 661 FBgn0065088 FBgn0065088 FBtr0091663 snmRNA:641 ncRNA CG8478-S2-modencode_R2_peak_133 chr2L 5542799 5543112 + 20 NA promoter-TSS (FBgn0014189) protein_coding-promoter-TSS (FBgn0014189) 296 FBgn0002525 FBgn0002525 FBtr0307059 Lam protein_coding CG8478-S2-modencode_R2_peak_2840 chrX 6119923 6120038 + 20 NA promoter-TSS (FBgn0003514) protein_coding-promoter-TSS (FBgn0003514) 300 FBgn0262730 FBgn0262730 FBtr0307164 CG14446 protein_coding CG8478-S2-modencode_R2_peak_879 chr2R 12048534 12049328 + 20 NA intron (FBgn0034083, intron 1 of 8) protein_coding-intron (FBgn0034083, intron 1 of 8) -2632 FBgn0034082 FBgn0034082 FBtr0087250 CG10734 protein_coding CG8478-S2-modencode_R2_peak_3298 chrX 20929946 20930188 + 20 NA intron (FBgn0031150, intron 1 of 6) protein_coding-intron (FBgn0031150, intron 1 of 6) 4494 FBgn0031150 FBgn0031150 FBtr0077247 bves protein_coding CG8478-S2-modencode_R2_peak_598 chr2R 5755002 5755248 + 20 NA TTS (FBgn0033457) protein_coding-TTS (FBgn0033457) 1988 FBgn0033457 FBgn0033457 FBtr0088375 Ntmt protein_coding CG8478-S2-modencode_R2_peak_950 chr2R 14044421 14045212 + 20 NA promoter-TSS (FBgn0034307) protein_coding-promoter-TSS (FBgn0034307) -421 FBgn0022238 FBgn0022238 FBtr0300484 lolal protein_coding CG8478-S2-modencode_R2_peak_541 chr2R 3659197 3659621 + 20 NA intron (FBgn0050497, intron 2 of 2) protein_coding-intron (FBgn0050497, intron 2 of 2) 13302 FBgn0000337 FBgn0000337 FBtr0088931 cn protein_coding CG8478-S2-modencode_R2_peak_243 chr2L 9657464 9657534 + 20 NA TTS (FBgn0053299) protein_coding-TTS (FBgn0053299) 899 FBgn0053299 FBgn0053299 FBtr0303875 CG33299 protein_coding CG8478-S2-modencode_R2_peak_925 chr2R 13309459 13309798 + 20 NA intron (FBgn0022029, intron 2 of 7) protein_coding-intron (FBgn0022029, intron 1 of 6) 1690 FBgn0022029 FBgn0022029 FBtr0086915 l(2)k01209 protein_coding CG8478-S2-modencode_R2_peak_1688 chr3L 18764853 18765077 + 20 NA intron (FBgn0001078, intron 2 of 9) protein_coding-intron (FBgn0001078, intron 2 of 9) -6121 FBgn0001078 FBgn0001078 FBtr0075087 ftz-f1 protein_coding CG8478-S2-modencode_R2_peak_562 chr2R 4019309 4019621 + 20 NA promoter-TSS (FBgn0260398) protein_coding-promoter-TSS (FBgn0260398) 527 FBgn0005648 FBgn0005648 FBtr0088786 Pabp2 protein_coding CG8478-S2-modencode_R2_peak_2994 chrX 10115414 10115611 + 20 NA exon (FBgn0085437, exon 2 of 14) protein_coding-exon (FBgn0085437, exon 2 of 14) 1369 FBgn0085437 FBgn0085437 FBtr0114584 CG34408 protein_coding CG8478-S2-modencode_R2_peak_1222 chr3L 639243 641078 + 20 NA exon (FBgn0263039, exon 1 of 1) ncRNA-exon (FBgn0263039, exon 1 of 1) -2099 FBgn0262451 FBgn0262451 FBtr0304469 ban pre_miRNA CG8478-S2-modencode_R2_peak_1075 chr2R 16801542 16801710 + 20 NA Intergenic Intergenic -2659 FBgn0020617 FBgn0020617 FBtr0071518 Rx protein_coding CG8478-S2-modencode_R2_peak_204 chr2L 8478056 8478208 + 20 NA promoter-TSS (FBgn0262029) protein_coding-promoter-TSS (FBgn0262029) 783 FBgn0053194 FBgn0053194 FBtr0079676 CheA29a protein_coding CG8478-S2-modencode_R2_peak_2259 chr3R 17675613 17676016 + 20 NA TTS (FBgn0015229) protein_coding-TTS (FBgn0015229) -3433 FBgn0045468 FBgn0045468 FBtr0084158 Gr93d protein_coding CG8478-S2-modencode_R2_peak_2120 chr3R 12106667 12107039 + 20 NA intron (FBgn0250823, intron 1 of 11) protein_coding-intron (FBgn0250823, intron 2 of 11) 8677 FBgn0250823 FBgn0250823 FBtr0100332 gish protein_coding CG8478-S2-modencode_R2_peak_153 chr2L 7024349 7024701 + 20 NA promoter-TSS (FBgn0000053) protein_coding-promoter-TSS (FBgn0000053) -585 FBgn0000053 FBgn0000053 FBtr0100353 ade3 protein_coding CG8478-S2-modencode_R2_peak_968 chr2R 14238804 14239592 + 20 NA intron (FBgn0010575, intron 1 of 10) protein_coding-intron (FBgn0010575, intron 1 of 11) 5603 FBgn0010575 FBgn0010575 FBtr0329996 sbb protein_coding CG8478-S2-modencode_R2_peak_2503 chr3R 26389627 26389862 + 20 NA intron (FBgn0082582, intron 1 of 6) protein_coding-intron (FBgn0082582, intron 2 of 7) -3823 FBgn0083991 FBgn0083991 FBtr0111047 CG34155 protein_coding CG8478-S2-modencode_R2_peak_2620 chrUextra 3564177 3564392 + 20 NA NA NA NA NA CG8478-S2-modencode_R2_peak_151 chr2L 6786895 6787836 + 20 NA promoter-TSS (FBgn0015776) protein_coding-promoter-TSS (FBgn0015776) -504 FBgn0015776 FBgn0015776 FBtr0332370 nrv1 protein_coding CG8478-S2-modencode_R2_peak_1643 chr3L 17572625 17572941 + 20 NA intron (FBgn0000567, intron 5 of 7) protein_coding-intron (FBgn0000567, intron 5 of 7) -13521 FBgn0086080 FBgn0086080 FBtr0114356 snoRNA:Me28S-A576 snoRNA CG8478-S2-modencode_R2_peak_916 chr2R 13149302 13149634 + 20 NA promoter-TSS (FBgn0261642) protein_coding-promoter-TSS (FBgn0261642) -376 FBgn0261642 FBgn0261642 FBtr0086993 mbl protein_coding CG8478-S2-modencode_R2_peak_2355 chr3R 20905942 20906519 + 20 NA Intergenic Intergenic -3044 FBgn0004897 FBgn0004897 FBtr0084770 fd96Ca protein_coding CG8478-S2-modencode_R2_peak_2269 chr3R 18193901 18194323 + 20 NA promoter-TSS (FBgn0003178) protein_coding-promoter-TSS (FBgn0003178) -818 FBgn0003178 FBgn0003178 FBtr0084214 PyK protein_coding CG8478-S2-modencode_R2_peak_1478 chr3L 10509553 10509884 + 20 NA intron (FBgn0052062, intron 1 of 14) protein_coding-intron (FBgn0052062, intron 1 of 14) 615 FBgn0052062 FBgn0052062 FBtr0305094 A2bp1 protein_coding CG8478-S2-modencode_R2_peak_2033 chr3R 9190165 9190269 + 20 NA promoter-TSS (FBgn0027610) protein_coding-promoter-TSS (FBgn0027610) 93 FBgn0086371 FBgn0086371 FBtr0082772 poly protein_coding CG8478-S2-modencode_R2_peak_1968 chr3R 5995972 5996146 + 20 NA TTS (FBgn0037796) protein_coding-TTS (FBgn0037796) 148 FBgn0040238 FBgn0040238 FBtr0082183 Best1 protein_coding CG8478-S2-modencode_R2_peak_2062 chr3R 10915382 10916034 + 20 NA intron (FBgn0038286, intron 1 of 4) protein_coding-intron (FBgn0038286, intron 1 of 4) 5625 FBgn0038286 FBgn0038286 FBtr0113236 CG6966 protein_coding CG8478-S2-modencode_R2_peak_1475 chr3L 10359661 10359760 + 20 NA Intergenic Intergenic 1329 FBgn0262439 FBgn0262439 FBtr0304433 mir-276a pre_miRNA CG8478-S2-modencode_R2_peak_892 chr2R 12467027 12467596 + 20 NA promoter-TSS (FBgn0016131) protein_coding-promoter-TSS (FBgn0016131) -318 FBgn0016131 FBgn0016131 FBtr0087104 Cdk4 protein_coding CG8478-S2-modencode_R2_peak_259 chr2L 11066531 11066825 + 20 NA exon (FBgn0032330, exon 1 of 7) protein_coding-exon (FBgn0032330, exon 1 of 7) 319 FBgn0032330 FBgn0032330 FBtr0331198 Samuel protein_coding CG8478-S2-modencode_R2_peak_741 chr2R 7503148 7503274 + 20 NA promoter-TSS (FBgn0264508) ncRNA-promoter-TSS (FBgn0264508) -489 FBgn0264508 FBgn0264508 FBtr0333069 CR43907 ncRNA CG8478-S2-modencode_R2_peak_2334 chr3R 20059234 20060446 + 20 NA intron (FBgn0043884, intron 2 of 16) protein_coding-intron (FBgn0043884, intron 2 of 16) -3040 FBgn0261452 FBgn0261452 FBtr0309753 scaRNA:mgU2-25 snoRNA CG8478-S2-modencode_R2_peak_2765 chrX 3636015 3637677 + 20 NA intron (FBgn0086899, intron 1 of 7) protein_coding-intron (FBgn0086899, intron 1 of 7) -23181 FBgn0015286 FBgn0015286 FBtr0070584 Rala protein_coding CG8478-S2-modencode_R2_peak_1256 chr3L 2409401 2409516 + 20 NA TTS (FBgn0035338) protein_coding-TTS (FBgn0035338) -8497 FBgn0261551 FBgn0261551 FBtr0302675 CG42669 protein_coding CG8478-S2-modencode_R2_peak_2802 chrX 4484180 4484435 + 20 NA intron (FBgn0052773, intron 1 of 4) protein_coding-intron (FBgn0052773, intron 1 of 4) -18345 FBgn0029717 FBgn0029717 FBtr0070697 CG12684 protein_coding CG8478-S2-modencode_R2_peak_1789 chr3R 12713 13315 + 20 NA TTS (FBgn0037213) protein_coding-TTS (FBgn0037213) 329 FBgn0053294 FBgn0053294 FBtr0308945 CR33294 pseudogene CG8478-S2-modencode_R2_peak_647 chr2R 6446993 6447261 + 20 NA intron (FBgn0263102, intron 1 of 10) protein_coding-intron (FBgn0263102, intron 1 of 9) 1734 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding CG8478-S2-modencode_R2_peak_1387 chr3L 7427957 7428662 + 20 NA promoter-TSS (FBgn0014011) protein_coding-promoter-TSS (FBgn0014011) -19 FBgn0014011 FBgn0014011 FBtr0076867 Rac2 protein_coding CG8478-S2-modencode_R2_peak_2577 chr4 1273393 1273524 + 20 NA intron (FBgn0053653, intron 21 of 22) protein_coding-intron (FBgn0053653, intron 22 of 23) 38895 FBgn0053653 FBgn0053653 FBtr0307334 Caps protein_coding CG8478-S2-modencode_R2_peak_3020 chrX 10388938 10389076 + 20 NA intron (FBgn0085443, intron 9 of 10) protein_coding-intron (FBgn0085443, intron 8 of 9) -8347 FBgn0052687 FBgn0052687 FBtr0071458 CG32687 protein_coding CG8478-S2-modencode_R2_peak_2950 chrX 9395482 9395912 + 20 NA Intergenic Intergenic 4836 FBgn0263508 FBgn0263508 FBtr0309529 CR43497 ncRNA CG8478-S2-modencode_R2_peak_3221 chrX 16837406 16837995 + 20 NA promoter-TSS (FBgn0030806) protein_coding-promoter-TSS (FBgn0030806) -52 FBgn0030808 FBgn0030808 FBtr0290096 RhoGAP15B protein_coding CG8478-S2-modencode_R2_peak_41 chr2L 1157607 1158524 + 20 NA promoter-TSS (FBgn0031312) protein_coding-promoter-TSS (FBgn0031312) -596 FBgn0031312 FBgn0031312 FBtr0331287 Tango14 protein_coding CG8478-S2-modencode_R2_peak_229 chr2L 9179266 9179558 + 20 NA intron (FBgn0041092, intron 2 of 13) protein_coding-intron (FBgn0041092, intron 2 of 14) 12634 FBgn0041092 FBgn0041092 FBtr0303872 tai protein_coding CG8478-S2-modencode_R2_peak_137 chr2L 6085497 6086445 + 20 NA intron (FBgn0028420, intron 1 of 3) protein_coding-intron (FBgn0028420, intron 1 of 3) -5598 FBgn0028420 FBgn0028420 FBtr0290297 Kr-h1 protein_coding CG8478-S2-modencode_R2_peak_2327 chr3R 19929647 19929814 + 20 NA exon (FBgn0013343, exon 1 of 1) protein_coding-exon (FBgn0013343, exon 1 of 1) 1735 FBgn0013343 FBgn0013343 FBtr0084588 Syx1A protein_coding CG8478-S2-modencode_R2_peak_2600 chrU 5300474 5300611 + 20 NA NA NA NA NA CG8478-S2-modencode_R2_peak_2337 chr3R 20101121 20101614 + 20 NA promoter-TSS (FBgn0019952) protein_coding-promoter-TSS (FBgn0019952) -615 FBgn0019952 FBgn0019952 FBtr0084599 Orct protein_coding CG8478-S2-modencode_R2_peak_1011 chr2R 14693270 14694318 + 20 NA Intergenic Intergenic -3890 FBgn0010651 FBgn0010651 FBtr0086635 l(2)08717 protein_coding CG8478-S2-modencode_R2_peak_1649 chr3L 17610004 17610354 + 20 NA intron (FBgn0000567, intron 1 of 7) protein_coding-intron (FBgn0000567, intron 1 of 7) 2246 FBgn0000567 FBgn0000567 FBtr0075204 Eip74EF protein_coding CG8478-S2-modencode_R2_peak_738 chr2R 7493628 7493789 + 20 NA intron (FBgn0033636, intron 1 of 16) protein_coding-intron (FBgn0033636, intron 1 of 16) -1267 FBgn0033636 FBgn0033636 FBtr0088094 tou protein_coding CG8478-S2-modencode_R2_peak_306 chr2L 13332928 13333017 + 20 NA Intergenic Intergenic -1851 FBgn0264308 FBgn0264308 FBtr0331504 CG43778 protein_coding CG8478-S2-modencode_R2_peak_1253 chr3L 1861314 1862016 + 20 NA exon (FBgn0004636, exon 2 of 2) protein_coding-exon (FBgn0004636, exon 2 of 2) 151 FBgn0004636 FBgn0004636 FBtr0332671 R protein_coding CG8478-S2-modencode_R2_peak_745 chr2R 7520375 7521288 + 20 NA promoter-TSS (FBgn0033638) protein_coding-promoter-TSS (FBgn0033638) 7587 FBgn0033638 FBgn0033638 FBtr0088089 CG9005 protein_coding CG8478-S2-modencode_R2_peak_1610 chr3L 16607984 16608607 + 20 NA exon (FBgn0017572, exon 1 of 1) protein_coding-exon (FBgn0017572, exon 1 of 1) 277 FBgn0017572 FBgn0017572 FBtr0331560 Mo25 protein_coding CG8478-S2-modencode_R2_peak_1178 chr2R 20655089 20655814 + 20 NA TTS (FBgn0035060) protein_coding-TTS (FBgn0035060) 246 FBgn0027590 FBgn0027590 FBtr0305310 CG16936 protein_coding CG8478-S2-modencode_R2_peak_837 chr2R 10656137 10656476 + 20 NA TTS (FBgn0259112) protein_coding-TTS (FBgn0259112) 621 FBgn0020767 FBgn0020767 FBtr0329879 Spred protein_coding CG8478-S2-modencode_R2_peak_3260 chrX 19051861 19052076 + 20 NA intron (FBgn0261461, intron 1 of 7) protein_coding-intron (FBgn0261461, intron 1 of 4) -11191 FBgn0261461 FBgn0261461 FBtr0299625 RhoGAP18B protein_coding CG8478-S2-modencode_R2_peak_1123 chr2R 18104343 18105120 + 20 NA TTS (FBgn0025186) protein_coding-TTS (FBgn0025186) 1272 FBgn0050278 FBgn0050278 FBtr0071780 CG30278 protein_coding CG8478-S2-modencode_R2_peak_2961 chrX 9477844 9478712 + 20 NA Intergenic Intergenic -1645 FBgn0001186 FBgn0001186 FBtr0071362 Hex-A protein_coding CG8478-S2-modencode_R2_peak_988 chr2R 14498704 14499522 + 20 NA TTS (FBgn0261587) protein_coding-TTS (FBgn0261587) 147 FBgn0050115 FBgn0050115 FBtr0310055 GEFmeso protein_coding CG8478-S2-modencode_R2_peak_2997 chrX 10159572 10159926 + 20 NA promoter-TSS (FBgn0040942) protein_coding-promoter-TSS (FBgn0040942) -453 FBgn0040942 FBgn0040942 FBtr0071481 CG12643 protein_coding CG8478-S2-modencode_R2_peak_1071 chr2R 16719185 16719822 + 20 NA exon (FBgn0016984, exon 1 of 2) protein_coding-exon (FBgn0016984, exon 1 of 2) 416 FBgn0016984 FBgn0016984 FBtr0071563 sktl protein_coding CG8478-S2-modencode_R2_peak_1468 chr3L 9840492 9841143 + 20 NA intron (FBgn0004390, intron 1 of 4) protein_coding-intron (FBgn0004390, intron 1 of 4) 7568 FBgn0004390 FBgn0004390 FBtr0330168 Gap1 protein_coding CG8478-S2-modencode_R2_peak_2458 chr3R 25516842 25517251 + 20 NA Intergenic Intergenic -1267 FBgn0039683 FBgn0039683 FBtr0085454 dmrt99B protein_coding CG8478-S2-modencode_R2_peak_1094 chr2R 17347745 17348219 + 20 NA intron (FBgn0010415, intron 2 of 6) protein_coding-intron (FBgn0010415, intron 2 of 5) -21452 FBgn0026369 FBgn0026369 FBtr0071642 Sara protein_coding CG8478-S2-modencode_R2_peak_2167 chr3R 13545076 13545173 + 20 NA promoter-TSS (FBgn0261987) protein_coding-promoter-TSS (FBgn0261987) -50 FBgn0261987 FBgn0261987 FBtr0083508 Pxt protein_coding CG8478-S2-modencode_R2_peak_838 chr2R 10678006 10678695 + 20 NA intron (FBgn0001319, intron 3 of 10) protein_coding-intron (FBgn0001319, intron 3 of 10) 6182 FBgn0001319 FBgn0001319 FBtr0329882 kn protein_coding CG8478-S2-modencode_R2_peak_3052 chrX 11048628 11049039 + 20 NA promoter-TSS (FBgn0261277) protein_coding-promoter-TSS (FBgn0261277) -998 FBgn0261277 FBgn0261277 FBtr0331743 rtv protein_coding CG8478-S2-modencode_R2_peak_234 chr2L 9387514 9387696 + 20 NA promoter-TSS (FBgn0012036) protein_coding-promoter-TSS (FBgn0012036) 46 FBgn0012036 FBgn0012036 FBtr0332597 Aldh protein_coding CG8478-S2-modencode_R2_peak_2209 chr3R 16078674 16079758 + 20 NA intron (FBgn0262582, intron 1 of 18) protein_coding-intron (FBgn0262582, intron 1 of 18) -39771 FBgn0262582 FBgn0262582 FBtr0305031 cic protein_coding CG8478-S2-modencode_R2_peak_2266 chr3R 17721947 17722380 + 20 NA intron (FBgn0038917, intron 4 of 4) protein_coding-intron (FBgn0038917, intron 4 of 4) 6902 FBgn0264426 FBgn0264426 FBtr0332545 CR43844 ncRNA CG8478-S2-modencode_R2_peak_714 chr2R 7090649 7091537 + 20 NA intron (FBgn0003396, intron 1 of 6) protein_coding-intron (FBgn0003396, intron 2 of 7) 15676 FBgn0033582 FBgn0033582 FBtr0330635 CG9084 protein_coding CG8478-S2-modencode_R2_peak_3043 chrX 10696269 10696558 + 20 NA intron (FBgn0262735, intron 1 of 5) protein_coding-intron (FBgn0262735, intron 2 of 5) 11713 FBgn0262735 FBgn0262735 FBtr0073419 Imp protein_coding CG8478-S2-modencode_R2_peak_2729 chrX 3256910 3257047 + 20 NA Intergenic Intergenic -10214 FBgn0262656 FBgn0262656 FBtr0070525 dm protein_coding CG8478-S2-modencode_R2_peak_1281 chr3L 3193040 3193213 + 20 NA promoter-TSS (FBgn0001233) protein_coding-promoter-TSS (FBgn0001233) 157 FBgn0001233 FBgn0001233 FBtr0073040 Hsp83 protein_coding CG8478-S2-modencode_R2_peak_2713 chrX 2536970 2537475 + 20 NA exon (FBgn0003371, exon 1 of 9) protein_coding-exon (FBgn0003371, exon 1 of 9) 172 FBgn0003371 FBgn0003371 FBtr0112828 sgg protein_coding CG8478-S2-modencode_R2_peak_2190 chr3R 14568957 14569034 + 20 NA TTS (FBgn0038649) protein_coding-TTS (FBgn0038649) 2768 FBgn0038649 FBgn0038649 FBtr0083682 CG7718 protein_coding CG8478-S2-modencode_R2_peak_482 chr2R 2058902 2059179 + 20 NA promoter-TSS (FBgn0050316) tRNA-promoter-TSS (FBgn0050316) 33 FBgn0011890 FBgn0011890 FBtr0086007 tRNA:K2:42Ad tRNA CG8478-S2-modencode_R2_peak_1383 chr3L 7363342 7363711 + 20 NA promoter-TSS (FBgn0082598) protein_coding-promoter-TSS (FBgn0082598) -374 FBgn0082598 FBgn0082598 FBtr0332730 akirin protein_coding CG8478-S2-modencode_R2_peak_321 chr2L 14023891 14024291 + 20 NA Intergenic Intergenic -2919 FBgn0028519 FBgn0028519 FBtr0080591 CG4500 protein_coding CG8478-S2-modencode_R2_peak_1723 chr3L 19934778 19934977 + 20 NA intron (FBgn0004852, intron 1 of 20) protein_coding-intron (FBgn0004852, intron 1 of 19) 2490 FBgn0004852 FBgn0004852 FBtr0304746 Ac76E protein_coding CG8478-S2-modencode_R2_peak_881 chr2R 12050782 12050895 + 20 NA intron (FBgn0034083, intron 1 of 8) protein_coding-intron (FBgn0034083, intron 1 of 8) -4539 FBgn0034082 FBgn0034082 FBtr0087250 CG10734 protein_coding CG8478-S2-modencode_R2_peak_1132 chr2R 18434203 18434485 + 20 NA promoter-TSS (FBgn0003175) protein_coding-promoter-TSS (FBgn0003175) -3255 FBgn0034736 FBgn0034736 FBtr0071835 CG6018 protein_coding CG8478-S2-modencode_R2_peak_2249 chr3R 17405770 17406230 + 20 NA exon (FBgn0013984, exon 4 of 13) protein_coding-exon (FBgn0013984, exon 4 of 13) 9913 FBgn0013984 FBgn0013984 FBtr0290232 InR protein_coding CG8478-S2-modencode_R2_peak_1485 chr3L 10659029 10659623 + 20 NA intron (FBgn0010762, intron 1 of 8) protein_coding-intron (FBgn0010762, intron 2 of 9) 1487 FBgn0010762 FBgn0010762 FBtr0331573 simj protein_coding CG8478-S2-modencode_R2_peak_2314 chr3R 19644612 19645028 + 20 NA promoter-TSS (FBgn0053111) protein_coding-promoter-TSS (FBgn0053111) 134 FBgn0053111 FBgn0053111 FBtr0084530 CG33111 protein_coding CG8478-S2-modencode_R2_peak_1059 chr2R 15556585 15556879 + 20 NA promoter-TSS (FBgn0015949) protein_coding-promoter-TSS (FBgn0015949) 624 FBgn0015949 FBgn0015949 FBtr0111010 hrg protein_coding CG8478-S2-modencode_R2_peak_2090 chr3R 11810432 11810823 + 20 NA Intergenic Intergenic -1296 FBgn0003507 FBgn0003507 FBtr0083216 srp protein_coding CG8478-S2-modencode_R2_peak_1322 chr3L 3472313 3472456 + 20 NA promoter-TSS (FBgn0052267) protein_coding-promoter-TSS (FBgn0052267) -63 FBgn0259224 FBgn0259224 FBtr0299777 CG42324 protein_coding CG8478-S2-modencode_R2_peak_311 chr2L 13571359 13571565 + 20 NA intron (FBgn0259984, intron 3 of 11) protein_coding-intron (FBgn0259984, intron 3 of 12) 21298 FBgn0259984 FBgn0259984 FBtr0301412 kuz protein_coding CG8478-S2-modencode_R2_peak_1936 chr3R 5399219 5399689 + 20 NA promoter-TSS (FBgn0037715) protein_coding-promoter-TSS (FBgn0037715) 473 FBgn0037715 FBgn0037715 FBtr0082109 CG9399 protein_coding CG8478-S2-modencode_R2_peak_77 chr2L 2779437 2779579 + 20 NA exon (FBgn0004242, exon 10 of 10) protein_coding-exon (FBgn0004242, exon 10 of 10) -7732 FBgn0031460 FBgn0031460 FBtr0077730 CG15399 protein_coding CG8478-S2-modencode_R2_peak_752 chr2R 7549221 7549847 + 20 NA intron (FBgn0044020, intron 3 of 3) protein_coding-intron (FBgn0044020, intron 2 of 2) -1394 FBgn0011916 FBgn0011916 FBtr0088086 tRNA:M2:48Bb tRNA CG8478-S2-modencode_R2_peak_2789 chrX 3859186 3859331 + 20 NA promoter-TSS (FBgn0029688) protein_coding-promoter-TSS (FBgn0029688) -471 FBgn0029688 FBgn0029688 FBtr0070626 lva protein_coding CG8478-S2-modencode_R2_peak_1307 chr3L 3420187 3420509 + 20 NA intron (FBgn0014388, intron 1 of 1) protein_coding-intron (FBgn0014388, intron 1 of 1) -2421 FBgn0014388 FBgn0014388 FBtr0073146 sty protein_coding CG8478-S2-modencode_R2_peak_1849 chr3R 3015221 3015339 + 19 NA intron (FBgn0086372, intron 1 of 14) protein_coding-intron (FBgn0086372, intron 1 of 10) 2557 FBgn0086372 FBgn0086372 FBtr0305153 lap protein_coding CG8478-S2-modencode_R2_peak_2648 chrX 1169479 1170014 + 19 NA Intergenic Intergenic -1064 FBgn0028550 FBgn0028550 FBtr0330391 Atf3 protein_coding CG8478-S2-modencode_R2_peak_1418 chr3L 8151531 8152331 + 19 NA promoter-TSS (FBgn0259916) protein_coding-promoter-TSS (FBgn0259916) 69 FBgn0259916 FBgn0259916 FBtr0332760 CG42445 protein_coding CG8478-S2-modencode_R2_peak_1982 chr3R 6688151 6688451 + 19 NA TTS (FBgn0037847) protein_coding-TTS (FBgn0037847) 409 FBgn0037846 FBgn0037846 FBtr0082297 CG6574 protein_coding CG8478-S2-modencode_R2_peak_348 chr2L 16612294 16612420 + 19 NA intron (FBgn0259735, intron 2 of 5) protein_coding-intron (FBgn0259735, intron 2 of 4) 4934 FBgn0032590 FBgn0032590 FBtr0080871 CG4631 protein_coding CG8478-S2-modencode_R2_peak_2803 chrX 4511269 4511414 + 19 NA promoter-TSS (FBgn0003053) protein_coding-promoter-TSS (FBgn0003053) -261 FBgn0003053 FBgn0003053 FBtr0100265 peb protein_coding CG8478-S2-modencode_R2_peak_2431 chr3R 24366136 24366272 + 19 NA promoter-TSS (FBgn0003137) protein_coding-promoter-TSS (FBgn0003137) -151 FBgn0003137 FBgn0003137 FBtr0301839 Ppn protein_coding CG8478-S2-modencode_R2_peak_2373 chr3R 21714444 21714736 + 19 NA exon (FBgn0028717, exon 1 of 4) protein_coding-exon (FBgn0028717, exon 1 of 4) 251 FBgn0028717 FBgn0028717 FBtr0084937 Lnk protein_coding CG8478-S2-modencode_R2_peak_2819 chrX 5411474 5411927 + 19 NA exon (FBgn0029771, exon 2 of 3) protein_coding-exon (FBgn0029771, exon 2 of 3) 406 FBgn0029771 FBgn0029771 FBtr0070780 CG12730 protein_coding CG8478-S2-modencode_R2_peak_2531 chr3R 27261868 27262071 + 19 NA intron (FBgn0261988, intron 3 of 12) protein_coding-intron (FBgn0261988, intron 3 of 12) 23622 FBgn0039848 FBgn0039848 FBtr0085810 lox protein_coding CG8478-S2-modencode_R2_peak_1998 chr3R 7712652 7712741 + 19 NA exon (FBgn0037960, exon 1 of 6) protein_coding-exon (FBgn0037960, exon 1 of 6) 191 FBgn0037960 FBgn0037960 FBtr0082515 mthl5 protein_coding CG8478-S2-modencode_R2_peak_1058 chr2R 15520080 15520353 + 19 NA Intergenic Intergenic -2568 FBgn0261807 FBgn0261807 FBtr0303283 CG42753 protein_coding CG8478-S2-modencode_R2_peak_778 chr2R 8920308 8920696 + 19 NA Intergenic Intergenic 14291 FBgn0033788 FBgn0033788 FBtr0087797 CG13323 protein_coding CG8478-S2-modencode_R2_peak_450 chr2R 601479 601837 + 19 NA intron (FBgn0026401, intron 10 of 23) protein_coding-intron (FBgn0026401, intron 9 of 22) 14857 FBgn0026401 FBgn0026401 FBtr0111118 Nipped-B protein_coding CG8478-S2-modencode_R2_peak_841 chr2R 10758119 10758293 + 19 NA promoter-TSS (FBgn0013773) protein_coding-promoter-TSS (FBgn0013773) 369 FBgn0022063 FBgn0022063 FBtr0302109 Pcf11 protein_coding CG8478-S2-modencode_R2_peak_2038 chr3R 9473339 9473633 + 19 NA intron (FBgn0015778, intron 2 of 4) protein_coding-intron (FBgn0015778, intron 2 of 4) -1053 FBgn0015778 FBgn0015778 FBtr0082800 rin protein_coding CG8478-S2-modencode_R2_peak_3134 chrX 13213800 13213870 + 19 NA intron (FBgn0085388, intron 1 of 4) protein_coding-intron (FBgn0085388, intron 1 of 4) -1505 FBgn0085388 FBgn0085388 FBtr0112575 IP3K2 protein_coding CG8478-S2-modencode_R2_peak_2801 chrX 4339003 4339092 + 19 NA intron (FBgn0000179, intron 2 of 7) protein_coding-intron (FBgn0000179, intron 2 of 7) 32158 FBgn0000179 FBgn0000179 FBtr0300609 bi protein_coding CG8478-S2-modencode_R2_peak_2822 chrX 5473539 5473800 + 19 NA Intergenic Intergenic -14637 FBgn0263511 FBgn0263511 FBtr0070781 Vsx1 protein_coding CG8478-S2-modencode_R2_peak_1453 chr3L 9502220 9502576 + 19 NA TTS (FBgn0010408) protein_coding-TTS (FBgn0010408) 285 FBgn0036008 FBgn0036008 FBtr0333863 CG3408 protein_coding CG8478-S2-modencode_R2_peak_3071 chrX 11711057 11712222 + 19 NA promoter-TSS (FBgn0262684) protein_coding-promoter-TSS (FBgn0262684) -731 FBgn0262684 FBgn0262684 FBtr0333015 CG43154 protein_coding CG8478-S2-modencode_R2_peak_3173 chrX 15192117 15192878 + 19 NA promoter-TSS (FBgn0261703) protein_coding-promoter-TSS (FBgn0261703) -545 FBgn0261703 FBgn0261703 FBtr0331765 gce protein_coding CG8478-S2-modencode_R2_peak_2444 chr3R 25040440 25041423 + 19 NA promoter-TSS (FBgn0262448) pre_miRNA-promoter-TSS (FBgn0262448) -442 FBgn0262448 FBgn0262448 FBtr0304463 mir-279 pre_miRNA CG8478-S2-modencode_R2_peak_934 chr2R 13504073 13504237 + 19 NA promoter-TSS (FBgn0082922) snoRNA-promoter-TSS (FBgn0082922) -106 FBgn0082922 FBgn0082922 FBtr0113512 snoRNA:Or-aca4 snoRNA CG8478-S2-modencode_R2_peak_2184 chr3R 14304931 14305252 + 19 NA intron (FBgn0004652, intron 1 of 7) protein_coding-intron (FBgn0004652, intron 2 of 7) 66217 FBgn0004652 FBgn0004652 FBtr0083647 fru protein_coding CG8478-S2-modencode_R2_peak_100 chr2L 4331651 4332004 + 19 NA TTS (FBgn0028482) protein_coding-TTS (FBgn0028482) -2099 FBgn0020762 FBgn0020762 FBtr0112898 Atet protein_coding CG8478-S2-modencode_R2_peak_2937 chrX 9359944 9360227 + 19 NA intron (FBgn0261260, intron 2 of 2) protein_coding-intron (FBgn0261260, intron 2 of 14) 30136 FBgn0261260 FBgn0261260 FBtr0302154 mgl protein_coding CG8478-S2-modencode_R2_peak_2382 chr3R 21846308 21846873 + 19 NA promoter-TSS (FBgn0002609) protein_coding-promoter-TSS (FBgn0002609) 208 FBgn0263653 FBgn0263653 FBtr0310084 CR43644 ncRNA CG8478-S2-modencode_R2_peak_1619 chr3L 16877350 16877420 + 19 NA intron (FBgn0261565, intron 3 of 9) protein_coding-intron (FBgn0261565, intron 3 of 9) -2821 FBgn0261565 FBgn0261565 FBtr0302784 Lmpt protein_coding CG8478-S2-modencode_R2_peak_2853 chrX 6594293 6594572 + 19 NA intron (FBgn0029895, intron 2 of 8) protein_coding-intron (FBgn0029895, intron 1 of 7) 891 FBgn0029895 FBgn0029895 FBtr0332892 CG14441 protein_coding CG8478-S2-modencode_R2_peak_2524 chr3R 26959896 26960020 + 19 NA promoter-TSS (FBgn0013973) protein_coding-promoter-TSS (FBgn0013973) -156 FBgn0013973 FBgn0013973 FBtr0085753 Gycbeta100B protein_coding CG8478-S2-modencode_R2_peak_2323 chr3R 19856832 19857365 + 19 NA promoter-TSS (FBgn0020647) protein_coding-promoter-TSS (FBgn0020647) -816 FBgn0039139 FBgn0039139 FBtr0084532 Ime4 protein_coding CG8478-S2-modencode_R2_peak_2947 chrX 9391238 9391513 + 19 NA intron (FBgn0261260, intron 1 of 14) protein_coding-intron (FBgn0261260, intron 1 of 14) -1154 FBgn0261260 FBgn0261260 FBtr0302154 mgl protein_coding CG8478-S2-modencode_R2_peak_975 chr2R 14293538 14293805 + 19 NA promoter-TSS (FBgn0063493) protein_coding-promoter-TSS (FBgn0063493) 153 FBgn0063494 FBgn0063494 FBtr0086674 GstE6 protein_coding CG8478-S2-modencode_R2_peak_168 chr2L 7961123 7961939 + 19 NA intron (FBgn0085450, intron 1 of 1) protein_coding-intron (FBgn0085450, intron 1 of 1) 15534 FBgn0085450 FBgn0085450 FBtr0112720 Snoo protein_coding CG8478-S2-modencode_R2_peak_480 chr2R 2056326 2056758 + 19 NA promoter-TSS (FBgn0011956) tRNA-promoter-TSS (FBgn0011956) -570 FBgn0011956 FBgn0011956 FBtr0085985 tRNA:R2:42Ab tRNA CG8478-S2-modencode_R2_peak_2122 chr3R 12110657 12110809 + 19 NA intron (FBgn0250823, intron 2 of 11) protein_coding-intron (FBgn0250823, intron 2 of 11) 12557 FBgn0250823 FBgn0250823 FBtr0100332 gish protein_coding CG8478-S2-modencode_R2_peak_1923 chr3R 5220690 5221037 + 19 NA promoter-TSS (FBgn0000723) protein_coding-promoter-TSS (FBgn0000723) -595 FBgn0000723 FBgn0000723 FBtr0082054 Fps85D protein_coding CG8478-S2-modencode_R2_peak_2896 chrX 7838612 7839060 + 19 NA promoter-TSS (FBgn0027280) protein_coding-promoter-TSS (FBgn0027280) -118 FBgn0027280 FBgn0027280 FBtr0071130 l(1)G0193 protein_coding CG8478-S2-modencode_R2_peak_2956 chrX 9472375 9472889 + 19 NA intron (FBgn0052699, intron 1 of 7) protein_coding-intron (FBgn0052699, intron 1 of 6) 1376 FBgn0052699 FBgn0052699 FBtr0071369 CG32699 protein_coding CG8478-S2-modencode_R2_peak_238 chr2L 9493933 9494257 + 19 NA intron (FBgn0004868, intron 1 of 2) protein_coding-intron (FBgn0004868, intron 1 of 2) 701 FBgn0004868 FBgn0004868 FBtr0079862 Gdi protein_coding CG8478-S2-modencode_R2_peak_2162 chr3R 13527701 13528555 + 19 NA intron (FBgn0261885, intron 4 of 15) protein_coding-intron (FBgn0261885, intron 4 of 15) -15345 FBgn0051249 FBgn0051249 FBtr0083483 CG31249 protein_coding CG8478-S2-modencode_R2_peak_97 chr2L 3825377 3825623 + 19 NA promoter-TSS (FBgn0003430) protein_coding-promoter-TSS (FBgn0003430) -180 FBgn0003430 FBgn0003430 FBtr0077499 slp1 protein_coding CG8478-S2-modencode_R2_peak_1363 chr3L 5345168 5345246 + 19 NA promoter-TSS (FBgn0016031) protein_coding-promoter-TSS (FBgn0016031) 3239 FBgn0016031 FBgn0016031 FBtr0077161 lama protein_coding CG8478-S2-modencode_R2_peak_2425 chr3R 23106918 23107426 + 19 NA promoter-TSS (FBgn0039507) protein_coding-promoter-TSS (FBgn0039507) 1780 FBgn0039507 FBgn0039507 FBtr0305974 mrt protein_coding CG8478-S2-modencode_R2_peak_254 chr2L 10972214 10972531 + 19 NA promoter-TSS (FBgn0032322) protein_coding-promoter-TSS (FBgn0032322) 92 FBgn0032322 FBgn0032322 FBtr0080147 CG16743 protein_coding CG8478-S2-modencode_R2_peak_1151 chr2R 19544461 19545366 + 19 NA promoter-TSS (FBgn0034886) protein_coding-promoter-TSS (FBgn0034886) -181 FBgn0034886 FBgn0034886 FBtr0072078 Pde8 protein_coding CG8478-S2-modencode_R2_peak_1350 chr3L 4543930 4544138 + 19 NA intron (FBgn0035558, intron 2 of 3) protein_coding-intron (FBgn0035558, intron 2 of 3) 1983 FBgn0035558 FBgn0035558 FBtr0113142 CG11357 protein_coding CG8478-S2-modencode_R2_peak_1492 chr3L 10765094 10765603 + 19 NA exon (FBgn0262890, exon 1 of 3) protein_coding-exon (FBgn0262890, exon 1 of 3) 256 FBgn0262890 FBgn0262890 FBtr0306304 CG43245 protein_coding CG8478-S2-modencode_R2_peak_648 chr2R 6450930 6451208 + 19 NA intron (FBgn0263102, intron 3 of 10) protein_coding-intron (FBgn0263102, intron 3 of 9) 5676 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding CG8478-S2-modencode_R2_peak_3067 chrX 11589541 11589726 + 19 NA TTS (FBgn0014133) protein_coding-TTS (FBgn0014133) 488 FBgn0011754 FBgn0011754 FBtr0301500 PhKgamma protein_coding CG8478-S2-modencode_R2_peak_2636 chrX 549245 549808 + 19 NA promoter-TSS (FBgn0025637) protein_coding-promoter-TSS (FBgn0025637) -555 FBgn0025639 FBgn0025639 FBtr0308652 Hmt4-20 protein_coding CG8478-S2-modencode_R2_peak_665 chr2R 6669325 6669491 + 19 NA intron (FBgn0053144, intron 1 of 7) protein_coding-intron (FBgn0053144, intron 1 of 7) -9556 FBgn0050018 FBgn0050018 FBtr0304706 mthl13 protein_coding CG8478-S2-modencode_R2_peak_3286 chrX 19780923 19781923 + 19 NA promoter-TSS (FBgn0052529) protein_coding-promoter-TSS (FBgn0052529) 2670 FBgn0086782 FBgn0086782 FBtr0074802 amn protein_coding CG8478-S2-modencode_R2_peak_2761 chrX 3614385 3614893 + 19 NA promoter-TSS (FBgn0015286) protein_coding-promoter-TSS (FBgn0015286) -974 FBgn0015286 FBgn0015286 FBtr0070584 Rala protein_coding CG8478-S2-modencode_R2_peak_651 chr2R 6453666 6453770 + 19 NA intron (FBgn0263102, intron 3 of 10) protein_coding-intron (FBgn0263102, intron 3 of 9) 8325 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding CG8478-S2-modencode_R2_peak_1272 chr3L 2636074 2636430 + 19 NA promoter-TSS (FBgn0035357) protein_coding-promoter-TSS (FBgn0035357) 4537 FBgn0035357 FBgn0035357 FBtr0072936 MEP-1 protein_coding CG8478-S2-modencode_R2_peak_1869 chr3R 3952477 3953172 + 19 NA promoter-TSS (FBgn0037550) protein_coding-promoter-TSS (FBgn0037550) 488 FBgn0037551 FBgn0037551 FBtr0081794 Gie protein_coding CG8478-S2-modencode_R2_peak_316 chr2L 14011221 14011461 + 19 NA promoter-TSS (FBgn0028909) tRNA-promoter-TSS (FBgn0028909) -705 FBgn0028909 FBgn0028909 FBtr0080609 tRNA:Q:34E tRNA CG8478-S2-modencode_R2_peak_452 chr2R 1196307 1196420 + 19 NA intron (FBgn0261403, intron 1 of 8) protein_coding-intron (FBgn0261403, intron 2 of 9) 1551 FBgn0261403 FBgn0261403 FBtr0086086 sxc protein_coding CG8478-S2-modencode_R2_peak_1416 chr3L 8087964 8088301 + 19 NA intron (FBgn0262579, intron 3 of 10) protein_coding-intron (FBgn0262579, intron 2 of 9) -3246 FBgn0035833 FBgn0035833 FBtr0076738 CG7565 protein_coding CG8478-S2-modencode_R2_peak_1264 chr3L 2553348 2553427 + 19 NA intron (FBgn0010905, intron 1 of 16) protein_coding-intron (FBgn0010905, intron 1 of 15) 905 FBgn0010905 FBgn0010905 FBtr0308203 Spn protein_coding CG8478-S2-modencode_R2_peak_2978 chrX 9581688 9581967 + 19 NA promoter-TSS (FBgn0261522) protein_coding-promoter-TSS (FBgn0261522) -395 FBgn0261522 FBgn0261522 FBtr0302457 CG42657 protein_coding CG8478-S2-modencode_R2_peak_1316 chr3L 3448119 3448540 + 19 NA intron (FBgn0026259, intron 4 of 8) protein_coding-intron (FBgn0026259, intron 4 of 8) 12648 FBgn0026259 FBgn0026259 FBtr0073144 eIF5B protein_coding CG8478-S2-modencode_R2_peak_608 chr2R 5963598 5963729 + 19 NA promoter-TSS (FBgn0033482) protein_coding-promoter-TSS (FBgn0033482) -516 FBgn0033482 FBgn0033482 FBtr0088428 CG1371 protein_coding CG8478-S2-modencode_R2_peak_2530 chr3R 27246246 27246630 + 19 NA intron (FBgn0261988, intron 2 of 12) protein_coding-intron (FBgn0261988, intron 2 of 12) 15467 FBgn0261988 FBgn0261988 FBtr0085788 Gprk2 protein_coding CG8478-S2-modencode_R2_peak_964 chr2R 14230407 14230947 + 19 NA intron (FBgn0010575, intron 1 of 10) protein_coding-intron (FBgn0010575, intron 1 of 11) 14124 FBgn0010575 FBgn0010575 FBtr0329996 sbb protein_coding CG8478-S2-modencode_R2_peak_846 chr2R 11023769 11024228 + 19 NA intron (FBgn0015371, intron 1 of 5) protein_coding-intron (FBgn0015371, intron 1 of 4) 9026 FBgn0262954 FBgn0262954 FBtr0112379 Rpb12 protein_coding CG8478-S2-modencode_R2_peak_895 chr2R 12470866 12471131 + 19 NA intron (FBgn0016131, intron 3 of 6) protein_coding-intron (FBgn0016131, intron 3 of 6) -2601 FBgn0003274 FBgn0003274 FBtr0087105 RpLP2 protein_coding CG8478-S2-modencode_R2_peak_252 chr2L 10500249 10500691 + 19 NA intron (FBgn0086347, intron 2 of 9) protein_coding-intron (FBgn0086347, intron 2 of 9) 6308 FBgn0086347 FBgn0086347 FBtr0304138 Myo31DF protein_coding CG8478-S2-modencode_R2_peak_2230 chr3R 16848758 16849366 + 19 NA exon (FBgn0046763, exon 1 of 3) protein_coding-exon (FBgn0046763, exon 1 of 3) 823 FBgn0046763 FBgn0046763 FBtr0084047 CG17278 protein_coding CG8478-S2-modencode_R2_peak_2427 chr3R 23477565 23477654 + 19 NA promoter-TSS (FBgn0027494) protein_coding-promoter-TSS (FBgn0027494) -873 FBgn0027494 FBgn0027494 FBtr0085194 RpS10a protein_coding CG8478-S2-modencode_R2_peak_1080 chr2R 16962953 16963038 + 19 NA promoter-TSS (FBgn0003748) protein_coding-promoter-TSS (FBgn0003748) -175 FBgn0003748 FBgn0003748 FBtr0071540 Treh protein_coding CG8478-S2-modencode_R2_peak_1207 chr3L 553056 553439 + 19 NA intron (FBgn0035142, intron 2 of 10) protein_coding-intron (FBgn0035142, intron 2 of 10) -10316 FBgn0035141 FBgn0035141 FBtr0072564 Cypl protein_coding CG8478-S2-modencode_R2_peak_85 chr2L 3346420 3346674 + 19 NA intron (FBgn0020445, intron 3 of 9) protein_coding-intron (FBgn0020445, intron 2 of 8) 8453 FBgn0020445 FBgn0020445 FBtr0089980 E23 protein_coding CG8478-S2-modencode_R2_peak_2143 chr3R 12760160 12760392 + 19 NA promoter-TSS (FBgn0000015) protein_coding-promoter-TSS (FBgn0000015) -2941 FBgn0000015 FBgn0000015 FBtr0330709 Abd-B protein_coding CG8478-S2-modencode_R2_peak_619 chr2R 6047201 6047712 + 19 NA intron (FBgn0033494, intron 1 of 16) protein_coding-intron (FBgn0033494, intron 1 of 16) -1367 FBgn0033495 FBgn0033495 FBtr0088370 CG12214 protein_coding CG8478-S2-modencode_R2_peak_949 chr2R 14028835 14029566 + 19 NA intron (FBgn0261619, intron 2 of 4) protein_coding-intron (FBgn0261619, intron 2 of 4) 378 FBgn0261619 FBgn0261619 FBtr0086740 pAbp protein_coding CG8478-S2-modencode_R2_peak_748 chr2R 7525753 7526079 + 19 NA intron (FBgn0033638, intron 1 of 7) protein_coding-intron (FBgn0033638, intron 1 of 7) 2502 FBgn0033638 FBgn0033638 FBtr0088089 CG9005 protein_coding CG8478-S2-modencode_R2_peak_1152 chr2R 19545863 19546190 + 19 NA promoter-TSS (FBgn0034886) protein_coding-promoter-TSS (FBgn0034886) 932 FBgn0034886 FBgn0034886 FBtr0072078 Pde8 protein_coding CG8478-S2-modencode_R2_peak_1995 chr3R 7604539 7604621 + 19 NA promoter-TSS (FBgn0086910) protein_coding-promoter-TSS (FBgn0086910) -509 FBgn0086910 FBgn0086910 FBtr0082533 l(3)neo38 protein_coding CG8478-S2-modencode_R2_peak_1792 chr3R 278309 278452 + 19 NA promoter-TSS (FBgn0263620) ncRNA-promoter-TSS (FBgn0263620) -280 FBgn0263620 FBgn0263620 FBtr0309986 CR43629 ncRNA CG8478-S2-modencode_R2_peak_3304 chrX 21194630 21195475 + 19 NA promoter-TSS (FBgn0031174) protein_coding-promoter-TSS (FBgn0031174) 8 FBgn0029067 FBgn0029067 FBtr0077226 Dd protein_coding CG8478-S2-modencode_R2_peak_3293 chrX 20102559 20102890 + 19 NA intron (FBgn0003654, intron 4 of 6) protein_coding-intron (FBgn0003654, intron 5 of 7) 4732 FBgn0003654 FBgn0003654 FBtr0089409 sw protein_coding CG8478-S2-modencode_R2_peak_2948 chrX 9393950 9394065 + 19 NA exon (FBgn0261260, exon 1 of 15) protein_coding-exon (FBgn0261260, exon 1 of 15) -3786 FBgn0261260 FBgn0261260 FBtr0302154 mgl protein_coding CG8478-S2-modencode_R2_peak_1088 chr2R 17211130 17211500 + 19 NA promoter-TSS (FBgn0050394) protein_coding-promoter-TSS (FBgn0050394) 351 FBgn0020306 FBgn0020306 FBtr0301350 dom protein_coding CG8478-S2-modencode_R2_peak_3161 chrX 14914670 14914993 + 19 NA intron (FBgn0030600, intron 13 of 22) protein_coding-intron (FBgn0030600, intron 13 of 22) -3636 FBgn0052594 FBgn0052594 FBtr0310270 be protein_coding CG8478-S2-modencode_R2_peak_347 chr2L 16601532 16601768 + 19 NA promoter-TSS (FBgn0259735) protein_coding-promoter-TSS (FBgn0259735) -4295 FBgn0051815 FBgn0051815 FBtr0080870 CG31815 protein_coding CG8478-S2-modencode_R2_peak_795 chr2R 9479999 9480196 + 19 NA intron (FBgn0027581, intron 1 of 7) protein_coding-intron (FBgn0027581, intron 1 of 7) 744 FBgn0027581 FBgn0027581 FBtr0330618 CG6191 protein_coding CG8478-S2-modencode_R2_peak_2608 chrU 6291777 6291847 + 19 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1833 chr3R 2674326 2674767 + 19 NA promoter-TSS (FBgn0003339) protein_coding-promoter-TSS (FBgn0003339) 1157 FBgn0003339 FBgn0003339 FBtr0081657 Scr protein_coding CG8478-S2-modencode_R2_peak_422 chr2L 21053337 21053634 + 19 NA exon (FBgn0010395, exon 3 of 6) protein_coding-exon (FBgn0010395, exon 3 of 6) 452 FBgn0010395 FBgn0010395 FBtr0081461 betaInt-nu protein_coding CG8478-S2-modencode_R2_peak_1563 chr3L 14402962 14403186 + 19 NA promoter-TSS (FBgn0003459) protein_coding-promoter-TSS (FBgn0003459) -35 FBgn0003459 FBgn0003459 FBtr0333041 stwl protein_coding CG8478-S2-modencode_R2_peak_32 chr2L 521707 521865 + 19 NA intron (FBgn0003963, intron 2 of 8) protein_coding-intron (FBgn0003963, intron 1 of 7) 20794 FBgn0010602 FBgn0010602 FBtr0310029 lwr protein_coding CG8478-S2-modencode_R2_peak_2429 chr3R 24161301 24162223 + 19 NA promoter-TSS (FBgn0261618) protein_coding-promoter-TSS (FBgn0261618) -499 FBgn0261618 FBgn0261618 FBtr0301181 larp protein_coding CG8478-S2-modencode_R2_peak_635 chr2R 6417895 6418554 + 19 NA intron (FBgn0005630, intron 5 of 6) protein_coding-intron (FBgn0005630, intron 5 of 5) 4359 FBgn0005630 FBgn0005630 FBtr0089362 lola protein_coding CG8478-S2-modencode_R2_peak_3055 chrX 11291162 11292056 + 19 NA intron (FBgn0001624, intron 4 of 11) protein_coding-intron (FBgn0001624, intron 7 of 8) -12371 FBgn0030296 FBgn0030296 FBtr0309222 CG15196 protein_coding CG8478-S2-modencode_R2_peak_2381 chr3R 21845640 21846006 + 19 NA promoter-TSS (FBgn0263652) ncRNA-promoter-TSS (FBgn0263652) -792 FBgn0263652 FBgn0263652 FBtr0310085 CR43643 ncRNA CG8478-S2-modencode_R2_peak_2436 chr3R 24671315 24671737 + 19 NA intron (FBgn0264324, intron 1 of 13) protein_coding-intron (FBgn0264324, intron 1 of 12) 504 FBgn0264324 FBgn0264324 FBtr0330305 spg protein_coding CG8478-S2-modencode_R2_peak_2888 chrX 7601650 7601835 + 19 NA promoter-TSS (FBgn0262979) protein_coding-promoter-TSS (FBgn0262979) -66 FBgn0262979 FBgn0262979 FBtr0306815 CG43287 protein_coding CG8478-S2-modencode_R2_peak_853 chr2R 11620914 11621114 + 19 NA intron (FBgn0050089, intron 2 of 6) protein_coding-intron (FBgn0050089, intron 2 of 6) 6111 FBgn0050089 FBgn0050089 FBtr0087285 CG30089 protein_coding CG8478-S2-modencode_R2_peak_1444 chr3L 9051157 9051282 + 19 NA promoter-TSS (FBgn0000116) protein_coding-promoter-TSS (FBgn0000116) -4558 FBgn0000116 FBgn0000116 FBtr0076546 Argk protein_coding CG8478-S2-modencode_R2_peak_1658 chr3L 17943427 17943657 + 19 NA TTS (FBgn0000568) protein_coding-TTS (FBgn0000568) 16410 FBgn0262793 FBgn0262793 FBtr0305909 CG43174 protein_coding CG8478-S2-modencode_R2_peak_874 chr2R 12017054 12017860 + 19 NA intron (FBgn0086676, intron 1 of 7) protein_coding-intron (FBgn0086676, intron 1 of 7) 4969 FBgn0086676 FBgn0086676 FBtr0089593 spin protein_coding CG8478-S2-modencode_R2_peak_980 chr2R 14300726 14302064 + 19 NA intron (FBgn0027835, intron 2 of 6) protein_coding-intron (FBgn0027835, intron 2 of 6) 1884 FBgn0027835 FBgn0027835 FBtr0086681 Dp1 protein_coding CG8478-S2-modencode_R2_peak_2944 chrX 9388193 9388991 + 19 NA intron (FBgn0261260, intron 1 of 2) protein_coding-intron (FBgn0261260, intron 1 of 14) 1629 FBgn0261260 FBgn0261260 FBtr0302154 mgl protein_coding CG8478-S2-modencode_R2_peak_850 chr2R 11228002 11228072 + 19 NA Intergenic Intergenic 8931 FBgn0034012 FBgn0034012 FBtr0114456 Hr51 protein_coding CG8478-S2-modencode_R2_peak_2493 chr3R 26160832 26163116 + 19 NA intron (FBgn0010113, intron 2 of 5) protein_coding-intron (FBgn0010113, intron 2 of 5) -29615 FBgn0085329 FBgn0085329 FBtr0305269 CG34300 protein_coding CG8478-S2-modencode_R2_peak_1346 chr3L 4253628 4253937 + 19 NA promoter-TSS (FBgn0035517) protein_coding-promoter-TSS (FBgn0035517) -994 FBgn0035517 FBgn0035517 FBtr0073228 CG1265 protein_coding CG8478-S2-modencode_R2_peak_161 chr2L 7425008 7425274 + 19 NA promoter-TSS (FBgn0262453) pre_miRNA-promoter-TSS (FBgn0262453) -712 FBgn0262453 FBgn0262453 FBtr0304473 mir-275 pre_miRNA CG8478-S2-modencode_R2_peak_786 chr2R 9191583 9191978 + 19 NA Intergenic Intergenic 4673 FBgn0033827 FBgn0033827 FBtr0087753 CG17047 protein_coding CG8478-S2-modencode_R2_peak_2553 chr4 80688 80864 + 19 NA exon (FBgn0264617, exon 3 of 4) ncRNA-exon (FBgn0264617, exon 3 of 4) 3653 FBgn0264617 FBgn0264617 FBtr0333704 CR43957 ncRNA CG8478-S2-modencode_R2_peak_473 chr2R 2032144 2032502 + 19 NA intron (FBgn0000546, intron 4 of 7) protein_coding-intron (FBgn0000546, intron 3 of 6) -2374 FBgn0011891 FBgn0011891 FBtr0086017 tRNA:K2:42Ae tRNA CG8478-S2-modencode_R2_peak_201 chr2L 8426229 8426395 + 19 NA promoter-TSS (FBgn0027932) protein_coding-promoter-TSS (FBgn0027932) 7286 FBgn0001137 FBgn0001137 FBtr0079708 grk protein_coding CG8478-S2-modencode_R2_peak_2889 chrX 7602064 7603597 + 19 NA TTS (FBgn0262979) protein_coding-TTS (FBgn0262979) 1022 FBgn0262979 FBgn0262979 FBtr0306815 CG43287 protein_coding CG8478-S2-modencode_R2_peak_474 chr2R 2032932 2033501 + 19 NA intron (FBgn0000546, intron 4 of 7) protein_coding-intron (FBgn0000546, intron 3 of 6) -3267 FBgn0011891 FBgn0011891 FBtr0086017 tRNA:K2:42Ae tRNA CG8478-S2-modencode_R2_peak_2547 chr3RHet 790532 791190 + 19 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1233 chr3L 712076 712237 + 19 NA promoter-TSS (FBgn0035159) protein_coding-promoter-TSS (FBgn0035159) -306 FBgn0035159 FBgn0035159 FBtr0072602 CG13896 protein_coding CG8478-S2-modencode_R2_peak_1950 chr3R 5907509 5907921 + 19 NA Intergenic Intergenic -6620 FBgn0037786 FBgn0037786 FBtr0309853 CG5361 protein_coding CG8478-S2-modencode_R2_peak_1454 chr3L 9607175 9607286 + 19 NA promoter-TSS (FBgn0002528) protein_coding-promoter-TSS (FBgn0002528) -784 FBgn0002528 FBgn0002528 FBtr0076382 LanB2 protein_coding CG8478-S2-modencode_R2_peak_2792 chrX 4011059 4011524 + 19 NA promoter-TSS (FBgn0026080) protein_coding-promoter-TSS (FBgn0026080) -309 FBgn0026080 FBgn0026080 FBtr0333186 Tip60 protein_coding CG8478-S2-modencode_R2_peak_2720 chrX 3070353 3070423 + 19 NA promoter-TSS (FBgn0000479) protein_coding-promoter-TSS (FBgn0000479) -85 FBgn0000479 FBgn0000479 FBtr0070522 dnc protein_coding CG8478-S2-modencode_R2_peak_2671 chrX 1837538 1837845 + 19 NA intron (FBgn0264562, intron 2 of 11) protein_coding-intron (FBgn0264562, intron 2 of 11) 1718 FBgn0264562 FBgn0264562 FBtr0333339 Hr4 protein_coding CG8478-S2-modencode_R2_peak_218 chr2L 8734443 8734624 + 19 NA exon (FBgn0003209, exon 2 of 10) protein_coding-exon (FBgn0003209, exon 2 of 10) 6127 FBgn0003209 FBgn0003209 FBtr0079746 raw protein_coding CG8478-S2-modencode_R2_peak_1089 chr2R 17262188 17262479 + 19 NA intron (FBgn0000395, intron 1 of 6) protein_coding-intron (FBgn0000395, intron 1 of 6) 4634 FBgn0000395 FBgn0000395 FBtr0071610 cv-2 protein_coding CG8478-S2-modencode_R2_peak_545 chr2R 3668832 3669167 + 19 NA intron (FBgn0050497, intron 1 of 2) protein_coding-intron (FBgn0050497, intron 1 of 2) 3712 FBgn0000337 FBgn0000337 FBtr0088931 cn protein_coding CG8478-S2-modencode_R2_peak_388 chr2L 19142117 19142442 + 19 NA intron (FBgn0010300, intron 1 of 4) protein_coding-intron (FBgn0010300, intron 1 of 3) -7046 FBgn0086447 FBgn0086447 FBtr0081161 l(2)37Cg protein_coding CG8478-S2-modencode_R2_peak_813 chr2R 9883134 9883536 + 19 NA intron (FBgn0002643, intron 2 of 6) protein_coding-intron (FBgn0002643, intron 2 of 6) -5120 FBgn0020620 FBgn0020620 FBtr0087604 RN-tre protein_coding CG8478-S2-modencode_R2_peak_1786 chr3LHet 1734664 1734762 + 19 NA NA NA NA NA CG8478-S2-modencode_R2_peak_2657 chrX 1411897 1412124 + 19 NA TTS (FBgn0025394) protein_coding-TTS (FBgn0025394) 4918 FBgn0025394 FBgn0025394 FBtr0070260 inc protein_coding CG8478-S2-modencode_R2_peak_1376 chr3L 6956994 6957542 + 19 NA intron (FBgn0261445, intron 1 of 2) protein_coding-intron (FBgn0261445, intron 1 of 2) 590 FBgn0261445 FBgn0261445 FBtr0076938 sgl protein_coding CG8478-S2-modencode_R2_peak_2926 chrX 9049812 9050076 + 19 NA promoter-TSS (FBgn0004828) protein_coding-promoter-TSS (FBgn0004828) 758 FBgn0004828 FBgn0004828 FBtr0071346 His3.3B protein_coding CG8478-S2-modencode_R2_peak_147 chr2L 6644573 6645033 + 19 NA intron (FBgn0051635, intron 2 of 8) protein_coding-intron (FBgn0051635, intron 2 of 6) 4311 FBgn0051635 FBgn0051635 FBtr0331190 CG31635 protein_coding CG8478-S2-modencode_R2_peak_2906 chrX 8086995 8087430 + 19 NA promoter-TSS (FBgn0261873) protein_coding-promoter-TSS (FBgn0261873) -21 FBgn0261873 FBgn0261873 FBtr0308219 sdt protein_coding CG8478-S2-modencode_R2_peak_88 chr2L 3538689 3539115 + 19 NA promoter-TSS (FBgn0024244) protein_coding-promoter-TSS (FBgn0024244) -833 FBgn0024244 FBgn0024244 FBtr0077531 drm protein_coding CG8478-S2-modencode_R2_peak_1568 chr3L 14592661 14592732 + 19 NA promoter-TSS (FBgn0040318) protein_coding-promoter-TSS (FBgn0040318) -56 FBgn0040318 FBgn0040318 FBtr0075720 HGTX protein_coding CG8478-S2-modencode_R2_peak_2410 chr3R 22360337 22361350 + 19 NA promoter-TSS (FBgn0039431) protein_coding-promoter-TSS (FBgn0039431) 96 FBgn0039431 FBgn0039431 FBtr0302210 CG6490 protein_coding CG8478-S2-modencode_R2_peak_2035 chr3R 9291621 9292298 + 19 NA promoter-TSS (FBgn0040554) ncRNA-promoter-TSS (FBgn0040554) -131 FBgn0040554 FBgn0040554 FBtr0309274 CR17025 ncRNA CG8478-S2-modencode_R2_peak_528 chr2R 3503347 3503729 + 19 NA intron (FBgn0033196, intron 2 of 10) protein_coding-intron (FBgn0033196, intron 2 of 10) 4678 FBgn0033196 FBgn0033196 FBtr0088950 CG1358 protein_coding CG8478-S2-modencode_R2_peak_2112 chr3R 12047199 12048107 + 19 NA Intergenic Intergenic -16680 FBgn0010438 FBgn0010438 FBtr0083277 mtSSB protein_coding CG8478-S2-modencode_R2_peak_2903 chrX 7985287 7985675 + 19 NA intron (FBgn0029996, intron 1 of 1) protein_coding-intron (FBgn0029996, intron 1 of 1) 644 FBgn0029996 FBgn0029996 FBtr0071114 Ubc-E2H protein_coding CG8478-S2-modencode_R2_peak_2754 chrX 3580897 3581084 + 19 NA intron (FBgn0023215, intron 2 of 8) protein_coding-intron (FBgn0023215, intron 2 of 8) -2408 FBgn0023215 FBgn0023215 FBtr0301825 Mnt protein_coding CG8478-S2-modencode_R2_peak_1749 chr3L 21278873 21279445 + 19 NA promoter-TSS (FBgn0259785) protein_coding-promoter-TSS (FBgn0259785) -40 FBgn0259785 FBgn0259785 FBtr0331793 pzg protein_coding CG8478-S2-modencode_R2_peak_1540 chr3L 12646319 12646700 + 19 NA promoter-TSS (FBgn0263379) ncRNA-promoter-TSS (FBgn0263379) -319 FBgn0263379 FBgn0263379 FBtr0309061 CR43431 ncRNA CG8478-S2-modencode_R2_peak_2692 chrX 2187587 2187661 + 19 NA promoter-TSS (FBgn0023526) protein_coding-promoter-TSS (FBgn0023526) -180 FBgn0023526 FBgn0023526 FBtr0070408 CG2865 protein_coding CG8478-S2-modencode_R2_peak_2548 chr3RHet 2383312 2383382 + 19 NA NA NA NA NA CG8478-S2-modencode_R2_peak_389 chr2L 19158072 19158707 + 19 NA promoter-TSS (FBgn0010300) protein_coding-promoter-TSS (FBgn0010300) -23156 FBgn0086447 FBgn0086447 FBtr0081161 l(2)37Cg protein_coding CG8478-S2-modencode_R2_peak_160 chr2L 7424322 7424734 + 19 NA intron (FBgn0264439, intron 1 of 1) ncRNA-intron (FBgn0264439, intron 1 of 1) 708 FBgn0264439 FBgn0264439 FBtr0332525 CR43857 ncRNA CG8478-S2-modencode_R2_peak_788 chr2R 9222443 9222654 + 19 NA Intergenic Intergenic -5602 FBgn0262391 FBgn0262391 FBtr0304273 mir-184 pre_miRNA CG8478-S2-modencode_R2_peak_1331 chr3L 4092683 4093027 + 19 NA promoter-TSS (FBgn0035496) protein_coding-promoter-TSS (FBgn0035496) -352 FBgn0035496 FBgn0035496 FBtr0073208 CG14990 protein_coding CG8478-S2-modencode_R2_peak_1828 chr3R 2567294 2567901 + 19 NA exon (FBgn0051481, exon 1 of 9) protein_coding-exon (FBgn0051481, exon 1 of 9) 188 FBgn0051481 FBgn0051481 FBtr0089279 pb protein_coding CG8478-S2-modencode_R2_peak_1052 chr2R 15350414 15351171 + 19 NA intron (FBgn0260934, intron 1 of 13) protein_coding-intron (FBgn0260934, intron 2 of 15) 7092 FBgn0002716 FBgn0002716 FBtr0086461 mei-W68 protein_coding CG8478-S2-modencode_R2_peak_1994 chr3R 7495958 7496067 + 19 NA exon (FBgn0259227, exon 2 of 5) protein_coding-exon (FBgn0259227, exon 2 of 5) -3929 FBgn0037930 FBgn0037930 FBtr0082423 CG14715 protein_coding CG8478-S2-modencode_R2_peak_1790 chr3R 91766 91914 + 19 NA promoter-TSS (FBgn0037228) protein_coding-promoter-TSS (FBgn0037228) -854 FBgn0037228 FBgn0037228 FBtr0111222 CG1092 protein_coding CG8478-S2-modencode_R2_peak_1799 chr3R 736315 736942 + 19 NA TTS (FBgn0004913) protein_coding-TTS (FBgn0004913) 350 FBgn0051536 FBgn0051536 FBtr0078840 Cdep protein_coding CG8478-S2-modencode_R2_peak_71 chr2L 2178048 2178556 + 19 NA exon (FBgn0000097, exon 1 of 4) protein_coding-exon (FBgn0000097, exon 1 of 4) 447 FBgn0000097 FBgn0000097 FBtr0330660 aop protein_coding CG8478-S2-modencode_R2_peak_1212 chr3L 612418 612663 + 19 NA Intergenic Intergenic 4106 FBgn0261636 FBgn0261636 FBtr0303002 CG42719 protein_coding CG8478-S2-modencode_R2_peak_2051 chr3R 10475122 10476278 + 19 NA intron (FBgn0086686, intron 1 of 5) protein_coding-intron (FBgn0086686, intron 1 of 5) 5212 FBgn0086686 FBgn0086686 FBtr0304678 l(3)L1231 protein_coding CG8478-S2-modencode_R2_peak_1608 chr3L 16606001 16606071 + 19 NA promoter-TSS (FBgn0004465) protein_coding-promoter-TSS (FBgn0004465) 450 FBgn0025558 FBgn0025558 FBtr0075314 CG4101 protein_coding CG8478-S2-modencode_R2_peak_794 chr2R 9427365 9427686 + 19 NA promoter-TSS (FBgn0033853) protein_coding-promoter-TSS (FBgn0033853) -495 FBgn0033853 FBgn0033853 FBtr0300193 CG6145 protein_coding CG8478-S2-modencode_R2_peak_1390 chr3L 7801952 7802725 + 19 NA exon (FBgn0052369, exon 1 of 7) protein_coding-exon (FBgn0052369, exon 1 of 7) 587 FBgn0052369 FBgn0052369 FBtr0076783 CG32369 protein_coding CG8478-S2-modencode_R2_peak_291 chr2L 12543103 12543352 + 19 NA promoter-TSS (FBgn0261709) ncRNA-promoter-TSS (FBgn0261709) 51 FBgn0261709 FBgn0261709 FBtr0303215 CR42746 ncRNA CG8478-S2-modencode_R2_peak_1706 chr3L 18989489 18990131 + 19 NA promoter-TSS (FBgn0036837) protein_coding-promoter-TSS (FBgn0036837) -3894 FBgn0036837 FBgn0036837 FBtr0332651 CG18135 protein_coding CG8478-S2-modencode_R2_peak_1343 chr3L 4235112 4235454 + 19 NA intron (FBgn0001257, intron 1 of 2) protein_coding-intron (FBgn0001257, intron 1 of 2) -5025 FBgn0035515 FBgn0035515 FBtr0073226 CG14997 protein_coding CG8478-S2-modencode_R2_peak_1268 chr3L 2578748 2579075 + 19 NA intron (FBgn0010909, intron 3 of 17) protein_coding-intron (FBgn0010909, intron 3 of 18) 7629 FBgn0010909 FBgn0010909 FBtr0333362 msn protein_coding CG8478-S2-modencode_R2_peak_1547 chr3L 13481541 13481767 + 18 NA intron (FBgn0036373, intron 2 of 3) protein_coding-intron (FBgn0036373, intron 2 of 3) -2274 FBgn0036372 FBgn0036372 FBtr0075819 CG10083 protein_coding CG8478-S2-modencode_R2_peak_3275 chrX 19577032 19577371 + 18 NA promoter-TSS (FBgn0031057) protein_coding-promoter-TSS (FBgn0031057) 348 FBgn0043903 FBgn0043903 FBtr0074756 dome protein_coding CG8478-S2-modencode_R2_peak_1667 chr3L 17988404 17988831 + 18 NA intron (FBgn0000568, intron 3 of 7) protein_coding-intron (FBgn0000568, intron 1 of 5) 7561 FBgn0086081 FBgn0086081 FBtr0114357 snoRNA:Me28S-A30 snoRNA CG8478-S2-modencode_R2_peak_250 chr2L 10298516 10298792 + 18 NA promoter-TSS (FBgn0032210) protein_coding-promoter-TSS (FBgn0032210) -397 FBgn0032210 FBgn0032210 FBtr0080068 CYLD protein_coding CG8478-S2-modencode_R2_peak_1037 chr2R 15283970 15284106 + 18 NA promoter-TSS (FBgn0261439) protein_coding-promoter-TSS (FBgn0261439) 241 FBgn0034443 FBgn0034443 FBtr0086551 cer protein_coding CG8478-S2-modencode_R2_peak_1191 chr3L 128666 129050 + 18 NA promoter-TSS (FBgn0020386) protein_coding-promoter-TSS (FBgn0020386) -592 FBgn0020386 FBgn0020386 FBtr0072471 Pdk1 protein_coding CG8478-S2-modencode_R2_peak_3186 chrX 15644682 15644792 + 18 NA TTS (FBgn0030685) protein_coding-TTS (FBgn0030685) 1527 FBgn0030683 FBgn0030683 FBtr0074087 CG8239 protein_coding CG8478-S2-modencode_R2_peak_338 chr2L 16280166 16280248 + 18 NA intron (FBgn0001994, intron 1 of 2) protein_coding-intron (FBgn0001994, intron 1 of 2) 7521 FBgn0001994 FBgn0001994 FBtr0080854 crp protein_coding CG8478-S2-modencode_R2_peak_394 chr2L 19424988 19425543 + 18 NA intron (FBgn0032779, intron 1 of 1) protein_coding-intron (FBgn0041789, intron 1 of 7) -1057 FBgn0032780 FBgn0032780 FBtr0081203 CG13085 protein_coding CG8478-S2-modencode_R2_peak_2818 chrX 5410873 5411267 + 18 NA promoter-TSS (FBgn0029771) protein_coding-promoter-TSS (FBgn0029771) -224 FBgn0029771 FBgn0029771 FBtr0070780 CG12730 protein_coding CG8478-S2-modencode_R2_peak_2020 chr3R 8546556 8546729 + 18 NA promoter-TSS (FBgn0002719) protein_coding-promoter-TSS (FBgn0002719) -1128 FBgn0002719 FBgn0002719 FBtr0330025 Men protein_coding CG8478-S2-modencode_R2_peak_1347 chr3L 4363689 4363762 + 18 NA promoter-TSS (FBgn0035534) protein_coding-promoter-TSS (FBgn0035534) 377 FBgn0035533 FBgn0035533 FBtr0306533 Cip4 protein_coding CG8478-S2-modencode_R2_peak_1063 chr2R 15616178 15616266 + 18 NA promoter-TSS (FBgn0050220) tRNA-promoter-TSS (FBgn0050220) -170 FBgn0050220 FBgn0050220 FBtr0086332 tRNA:CR30220 tRNA CG8478-S2-modencode_R2_peak_1532 chr3L 11825658 11826393 + 18 NA promoter-TSS (FBgn0000404) protein_coding-promoter-TSS (FBgn0000404) 653 FBgn0000404 FBgn0000404 FBtr0076076 CycA protein_coding CG8478-S2-modencode_R2_peak_542 chr2R 3660936 3661105 + 18 NA intron (FBgn0050497, intron 2 of 2) protein_coding-intron (FBgn0050497, intron 2 of 2) 11691 FBgn0000337 FBgn0000337 FBtr0088931 cn protein_coding CG8478-S2-modencode_R2_peak_2552 chr4 79584 79818 + 18 NA intron (FBgn0264617, intron 2 of 3) ncRNA-intron (FBgn0264617, intron 2 of 3) 2578 FBgn0264617 FBgn0264617 FBtr0333704 CR43957 ncRNA CG8478-S2-modencode_R2_peak_1115 chr2R 17601782 17602717 + 18 NA intron (FBgn0004362, intron 2 of 3) protein_coding-intron (FBgn0004362, intron 1 of 2) 1413 FBgn0004362 FBgn0004362 FBtr0301410 HmgD protein_coding CG8478-S2-modencode_R2_peak_1953 chr3R 5910663 5910966 + 18 NA Intergenic Intergenic -6089 FBgn0262378 FBgn0262378 FBtr0304218 mir-317 pre_miRNA CG8478-S2-modencode_R2_peak_3092 chrX 12561595 12562272 + 18 NA intron (FBgn0011837, intron 2 of 3) protein_coding-intron (FBgn0011837, intron 2 of 3) 8438 FBgn0053963 FBgn0053963 FBtr0100004 CR33963 ncRNA CG8478-S2-modencode_R2_peak_1090 chr2R 17263334 17263451 + 18 NA intron (FBgn0000395, intron 1 of 6) protein_coding-intron (FBgn0000395, intron 1 of 6) 3575 FBgn0000395 FBgn0000395 FBtr0071610 cv-2 protein_coding CG8478-S2-modencode_R2_peak_2773 chrX 3655245 3655649 + 18 NA intron (FBgn0086899, intron 2 of 9) protein_coding-intron (FBgn0086899, intron 2 of 9) -11226 FBgn0086899 FBgn0086899 FBtr0070596 tlk protein_coding CG8478-S2-modencode_R2_peak_1168 chr2R 19955775 19956080 + 18 NA promoter-TSS (FBgn0034971) protein_coding-promoter-TSS (FBgn0034971) 57 FBgn0034970 FBgn0034970 FBtr0309372 yki protein_coding CG8478-S2-modencode_R2_peak_496 chr2R 2516815 2517195 + 18 NA intron (FBgn0262736, intron 2 of 3) protein_coding-intron (FBgn0262736, intron 2 of 3) 2881 FBgn0262736 FBgn0262736 FBtr0086153 Vha16-1 protein_coding CG8478-S2-modencode_R2_peak_3308 chrX 21238393 21238699 + 18 NA promoter-TSS (FBgn0024251) protein_coding-promoter-TSS (FBgn0024251) -1095 FBgn0024251 FBgn0024251 FBtr0331744 bbx protein_coding CG8478-S2-modencode_R2_peak_1565 chr3L 14456693 14456860 + 18 NA intron (FBgn0087007, intron 4 of 8) protein_coding-intron (FBgn0087007, intron 4 of 8) 53050 FBgn0036423 FBgn0036423 FBtr0333040 CG3919 protein_coding CG8478-S2-modencode_R2_peak_3010 chrX 10259711 10260242 + 18 NA TTS (FBgn0052679) protein_coding-TTS (FBgn0052679) 370 FBgn0028331 FBgn0028331 FBtr0071470 l(1)G0289 protein_coding CG8478-S2-modencode_R2_peak_1334 chr3L 4122039 4122249 + 18 NA TTS (FBgn0264693) protein_coding-TTS (FBgn0264693) -6392 FBgn0035499 FBgn0035499 FBtr0310531 Chd64 protein_coding CG8478-S2-modencode_R2_peak_2332 chr3R 20056307 20057043 + 18 NA promoter-TSS (FBgn0039172) protein_coding-promoter-TSS (FBgn0039172) 391 FBgn0043884 FBgn0043884 FBtr0084563 mask protein_coding CG8478-S2-modencode_R2_peak_662 chr2R 6505662 6506299 + 18 NA intron (FBgn0033538, intron 1 of 9) protein_coding-intron (FBgn0033538, intron 1 of 8) -3728 FBgn0033538 FBgn0033538 FBtr0113063 CG11883 protein_coding CG8478-S2-modencode_R2_peak_2862 chrX 6755636 6755974 + 18 NA Intergenic Intergenic -6736 FBgn0263993 FBgn0263993 FBtr0330263 CG43736 protein_coding CG8478-S2-modencode_R2_peak_2216 chr3R 16587968 16588039 + 18 NA promoter-TSS (FBgn0051195) protein_coding-promoter-TSS (FBgn0051195) 84 FBgn0051195 FBgn0051195 FBtr0302188 CG31195 protein_coding CG8478-S2-modencode_R2_peak_276 chr2L 12484100 12484612 + 18 NA promoter-TSS (FBgn0259176) protein_coding-promoter-TSS (FBgn0259176) 12977 FBgn0051858 FBgn0051858 FBtr0080381 t-cup protein_coding CG8478-S2-modencode_R2_peak_1423 chr3L 8434902 8435575 + 18 NA promoter-TSS (FBgn0263352) protein_coding-promoter-TSS (FBgn0263352) -3448 FBgn0263352 FBgn0263352 FBtr0076661 Unr protein_coding CG8478-S2-modencode_R2_peak_849 chr2R 11210196 11210349 + 18 NA promoter-TSS (FBgn0013750) protein_coding-promoter-TSS (FBgn0013750) -55 FBgn0013750 FBgn0013750 FBtr0087379 Arf51F protein_coding CG8478-S2-modencode_R2_peak_1053 chr2R 15354556 15355083 + 18 NA promoter-TSS (FBgn0260934) protein_coding-promoter-TSS (FBgn0260934) 11119 FBgn0002716 FBgn0002716 FBtr0086461 mei-W68 protein_coding CG8478-S2-modencode_R2_peak_2115 chr3R 12070206 12071505 + 18 NA intron (FBgn0040071, intron 1 of 1) protein_coding-intron (FBgn0040071, intron 1 of 1) 2314 FBgn0040071 FBgn0040071 FBtr0083258 tara protein_coding CG8478-S2-modencode_R2_peak_407 chr2L 20428852 20429139 + 18 NA promoter-TSS (FBgn0263355) protein_coding-promoter-TSS (FBgn0263355) -32 FBgn0263355 FBgn0263355 FBtr0330204 CG31688 protein_coding CG8478-S2-modencode_R2_peak_2236 chr3R 16967018 16967401 + 18 NA intron (FBgn0264357, intron 1 of 12) protein_coding-intron (FBgn0264357, intron 1 of 12) 3217 FBgn0250820 FBgn0250820 FBtr0084017 CG5802 protein_coding CG8478-S2-modencode_R2_peak_65 chr2L 2161065 2162780 + 18 NA promoter-TSS (FBgn0000097) protein_coding-promoter-TSS (FBgn0000097) 6162 FBgn0031393 FBgn0031393 FBtr0077832 CG15382 protein_coding CG8478-S2-modencode_R2_peak_3203 chrX 16266539 16267800 + 18 NA promoter-TSS (FBgn0004598) protein_coding-promoter-TSS (FBgn0004598) 48 FBgn0004598 FBgn0004598 FBtr0074265 Fur2 protein_coding CG8478-S2-modencode_R2_peak_3227 chrX 17181359 17181578 + 18 NA exon (FBgn0024238, exon 3 of 5) protein_coding-exon (FBgn0024238, exon 3 of 5) -2952 FBgn0030837 FBgn0030837 FBtr0074444 CG8661 protein_coding CG8478-S2-modencode_R2_peak_2025 chr3R 8807521 8808246 + 18 NA intron (FBgn0038100, intron 1 of 3) protein_coding-intron (FBgn0038100, intron 1 of 3) 1115 FBgn0038100 FBgn0038100 FBtr0082693 Paip2 protein_coding CG8478-S2-modencode_R2_peak_686 chr2R 6976349 6977437 + 18 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -2749 FBgn0262818 FBgn0262818 FBtr0306050 CG43189 protein_coding CG8478-S2-modencode_R2_peak_689 chr2R 6980193 6980791 + 18 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -6348 FBgn0262818 FBgn0262818 FBtr0306050 CG43189 protein_coding CG8478-S2-modencode_R2_peak_977 chr2R 14295780 14296008 + 18 NA promoter-TSS (FBgn0063491) protein_coding-promoter-TSS (FBgn0063491) 555 FBgn0063492 FBgn0063492 FBtr0086676 GstE8 protein_coding CG8478-S2-modencode_R2_peak_2558 chr4 104695 104868 + 18 NA intron (FBgn0085432, intron 5 of 11) protein_coding-intron (FBgn0085432, intron 6 of 12) 14494 FBgn0085432 FBgn0085432 FBtr0112657 pan protein_coding CG8478-S2-modencode_R2_peak_208 chr2L 8672605 8672675 + 18 NA promoter-TSS (FBgn0001114) protein_coding-promoter-TSS (FBgn0001114) -512 FBgn0001114 FBgn0001114 FBtr0307091 Glt protein_coding CG8478-S2-modencode_R2_peak_992 chr2R 14537696 14537859 + 18 NA intron (FBgn0034371, intron 1 of 5) protein_coding-intron (FBgn0034371, intron 1 of 6) 2502 FBgn0034371 FBgn0034371 FBtr0086658 SP2637 protein_coding CG8478-S2-modencode_R2_peak_2962 chrX 9478914 9479030 + 18 NA promoter-TSS (FBgn0001186) protein_coding-promoter-TSS (FBgn0001186) -951 FBgn0001186 FBgn0001186 FBtr0071362 Hex-A protein_coding CG8478-S2-modencode_R2_peak_290 chr2L 12540391 12540513 + 18 NA exon (FBgn0259176, exon 1 of 5) protein_coding-exon (FBgn0259176, exon 1 of 5) -2724 FBgn0261709 FBgn0261709 FBtr0303215 CR42746 ncRNA CG8478-S2-modencode_R2_peak_1811 chr3R 1833183 1833605 + 18 NA promoter-TSS (FBgn0003261) protein_coding-promoter-TSS (FBgn0003261) 907 FBgn0003261 FBgn0003261 FBtr0078654 Rm62 protein_coding CG8478-S2-modencode_R2_peak_457 chr2R 1608091 1608270 + 18 NA intron (FBgn0000099, intron 1 of 7) protein_coding-intron (FBgn0000099, intron 1 of 7) -3626 FBgn0000099 FBgn0000099 FBtr0300504 ap protein_coding CG8478-S2-modencode_R2_peak_1847 chr3R 3012858 3013018 + 18 NA promoter-TSS (FBgn0037482) protein_coding-promoter-TSS (FBgn0037482) 215 FBgn0086372 FBgn0086372 FBtr0305153 lap protein_coding CG8478-S2-modencode_R2_peak_356 chr2L 17379076 17379371 + 18 NA intron (FBgn0032633, intron 1 of 7) protein_coding-intron (FBgn0032633, intron 1 of 6) 4924 FBgn0032633 FBgn0032633 FBtr0080969 Lrch protein_coding CG8478-S2-modencode_R2_peak_823 chr2R 10095757 10096042 + 18 NA intron (FBgn0005613, intron 1 of 2) protein_coding-intron (FBgn0005613, intron 1 of 2) 4015 FBgn0005613 FBgn0005613 FBtr0087576 Sox15 protein_coding CG8478-S2-modencode_R2_peak_2987 chrX 9767039 9767156 + 18 NA TTS (FBgn0052695) protein_coding-TTS (FBgn0052695) 925 FBgn0052695 FBgn0052695 FBtr0071398 CG32695 protein_coding CG8478-S2-modencode_R2_peak_1155 chr2R 19599353 19599658 + 18 NA Intergenic Intergenic -1920 FBgn0034897 FBgn0034897 FBtr0113114 Sesn protein_coding CG8478-S2-modencode_R2_peak_354 chr2L 16889070 16889282 + 18 NA promoter-TSS (FBgn0260758) protein_coding-promoter-TSS (FBgn0260758) 686 FBgn0261671 FBgn0261671 FBtr0304930 tweek protein_coding CG8478-S2-modencode_R2_peak_105 chr2L 4377916 4378040 + 18 NA promoter-TSS (FBgn0026319) protein_coding-promoter-TSS (FBgn0026319) -562 FBgn0026319 FBgn0026319 FBtr0290244 Traf4 protein_coding CG8478-S2-modencode_R2_peak_222 chr2L 8949767 8950185 + 18 NA intron (FBgn0032078, intron 1 of 3) protein_coding-intron (FBgn0032078, intron 1 of 3) -3374 FBgn0032078 FBgn0032078 FBtr0079790 C1GalTA protein_coding CG8478-S2-modencode_R2_peak_2 chr2L 120532 121054 + 18 NA promoter-TSS (FBgn0031220) protein_coding-promoter-TSS (FBgn0031220) -51 FBgn0031220 FBgn0031220 FBtr0330646 CG4822 protein_coding CG8478-S2-modencode_R2_peak_784 chr2R 9111258 9111337 + 18 NA TTS (FBgn0264539) protein_coding-intron (FBgn0011763, intron 1 of 8) 201 FBgn0011763 FBgn0011763 FBtr0087741 Dp protein_coding CG8478-S2-modencode_R2_peak_1431 chr3L 8684766 8685232 + 18 NA Intergenic Intergenic 16140 FBgn0001168 FBgn0001168 FBtr0076569 h protein_coding CG8478-S2-modencode_R2_peak_230 chr2L 9205240 9205696 + 18 NA intron (FBgn0041092, intron 2 of 12) protein_coding-intron (FBgn0041092, intron 3 of 14) 31126 FBgn0051885 FBgn0051885 FBtr0079820 tRNA:CR31885 tRNA CG8478-S2-modencode_R2_peak_1782 chr3LHet 695432 695551 + 18 NA NA NA NA NA CG8478-S2-modencode_R2_peak_3246 chrX 18530503 18530779 + 18 NA intron (FBgn0027335, intron 5 of 5) protein_coding-intron (FBgn0027335, intron 6 of 6) -1705 FBgn0030941 FBgn0030941 FBtr0074617 wgn protein_coding CG8478-S2-modencode_R2_peak_1120 chr2R 18004522 18004749 + 18 NA promoter-TSS (FBgn0243516) protein_coding-promoter-TSS (FBgn0243516) -792 FBgn0243516 FBgn0243516 FBtr0302295 Vrp1 protein_coding CG8478-S2-modencode_R2_peak_2730 chrX 3259303 3259639 + 18 NA Intergenic Intergenic -7721 FBgn0262656 FBgn0262656 FBtr0070525 dm protein_coding CG8478-S2-modencode_R2_peak_2288 chr3R 19140440 19140563 + 18 NA promoter-TSS (FBgn0003118) protein_coding-promoter-TSS (FBgn0003118) -24590 FBgn0039071 FBgn0039071 FBtr0084382 CG4434 protein_coding CG8478-S2-modencode_R2_peak_277 chr2L 12487701 12488133 + 18 NA intron (FBgn0259176, intron 5 of 6) protein_coding-intron (FBgn0259176, intron 1 of 2) 9416 FBgn0051858 FBgn0051858 FBtr0080381 t-cup protein_coding CG8478-S2-modencode_R2_peak_63 chr2L 2009728 2010516 + 18 NA TTS (FBgn0051943) tRNA-TTS (FBgn0051943) 263 FBgn0031384 FBgn0031384 FBtr0301066 CG4238 protein_coding CG8478-S2-modencode_R2_peak_1927 chr3R 5262004 5262388 + 18 NA promoter-TSS (FBgn0261552) protein_coding-promoter-TSS (FBgn0261552) 18532 FBgn0261552 FBgn0261552 FBtr0302691 ps protein_coding CG8478-S2-modencode_R2_peak_2745 chrX 3339501 3339595 + 18 NA promoter-TSS (FBgn0029657) protein_coding-promoter-TSS (FBgn0029657) -5369 FBgn0029657 FBgn0029657 FBtr0332304 CG12535 protein_coding CG8478-S2-modencode_R2_peak_656 chr2R 6488099 6488388 + 18 NA intron (FBgn0263102, intron 1 of 6) protein_coding-intron (FBgn0263102, intron 3 of 9) -21465 FBgn0033538 FBgn0033538 FBtr0113063 CG11883 protein_coding CG8478-S2-modencode_R2_peak_2296 chr3R 19158911 19159046 + 18 NA intron (FBgn0003118, intron 3 of 8) protein_coding-intron (FBgn0003118, intron 3 of 8) 12906 FBgn0003118 FBgn0003118 FBtr0089715 pnt protein_coding CG8478-S2-modencode_R2_peak_1576 chr3L 15100103 15100905 + 18 NA TTS (FBgn0264702) ncRNA-TTS (FBgn0264702) 1522 FBgn0262707 FBgn0262707 FBtr0075635 CTPsyn protein_coding CG8478-S2-modencode_R2_peak_7 chr2L 170403 170790 + 18 NA intron (FBgn0016977, intron 3 of 13) protein_coding-intron (FBgn0016977, intron 2 of 10) -11932 FBgn0053635 FBgn0053635 FBtr0091612 CG33635 protein_coding CG8478-S2-modencode_R2_peak_2725 chrX 3237888 3238210 + 18 NA TTS (FBgn0000479) protein_coding-TTS (FBgn0000479) -27614 FBgn0029656 FBgn0029656 FBtr0070536 CG10793 protein_coding CG8478-S2-modencode_R2_peak_546 chr2R 3670449 3670838 + 18 NA promoter-TSS (FBgn0050497) protein_coding-promoter-TSS (FBgn0050497) 2068 FBgn0000337 FBgn0000337 FBtr0088931 cn protein_coding CG8478-S2-modencode_R2_peak_1523 chr3L 11527666 11528060 + 18 NA promoter-TSS (FBgn0259481) protein_coding-promoter-TSS (FBgn0259481) -285 FBgn0259481 FBgn0259481 FBtr0333217 Mob2 protein_coding CG8478-S2-modencode_R2_peak_233 chr2L 9386937 9387294 + 18 NA promoter-TSS (FBgn0012036) protein_coding-promoter-TSS (FBgn0012036) -444 FBgn0012036 FBgn0012036 FBtr0332597 Aldh protein_coding CG8478-S2-modencode_R2_peak_2541 chr3R 27781764 27782009 + 18 NA intron (FBgn0011224, intron 5 of 15) protein_coding-intron (FBgn0011224, intron 4 of 13) 25005 FBgn0011224 FBgn0011224 FBtr0300265 heph protein_coding CG8478-S2-modencode_R2_peak_2513 chr3R 26628970 26629480 + 18 NA intron (FBgn0011739, intron 1 of 7) protein_coding-intron (FBgn0011739, intron 1 of 7) 3116 FBgn0011739 FBgn0011739 FBtr0085720 wts protein_coding CG8478-S2-modencode_R2_peak_920 chr2R 13159413 13159690 + 18 NA intron (FBgn0261642, intron 1 of 7) protein_coding-intron (FBgn0261642, intron 1 of 3) 9707 FBgn0261642 FBgn0261642 FBtr0086993 mbl protein_coding CG8478-S2-modencode_R2_peak_601 chr2R 5817065 5817741 + 18 NA promoter-TSS (FBgn0011656) protein_coding-promoter-TSS (FBgn0011656) 19005 FBgn0033465 FBgn0033465 FBtr0308338 CG12140 protein_coding CG8478-S2-modencode_R2_peak_573 chr2R 4536152 4536271 + 18 NA promoter-TSS (FBgn0003892) protein_coding-promoter-TSS (FBgn0003892) -929 FBgn0003892 FBgn0003892 FBtr0089427 ptc protein_coding CG8478-S2-modencode_R2_peak_712 chr2R 7086408 7086886 + 18 NA intron (FBgn0003396, intron 1 of 6) protein_coding-intron (FBgn0003396, intron 2 of 7) 20122 FBgn0033582 FBgn0033582 FBtr0330635 CG9084 protein_coding CG8478-S2-modencode_R2_peak_3108 chrX 12626352 12626525 + 18 NA intron (FBgn0263865, intron 2 of 10) protein_coding-intron (FBgn0263865, intron 1 of 9) 10039 FBgn0263865 FBgn0263865 FBtr0333766 Smr protein_coding CG8478-S2-modencode_R2_peak_2019 chr3R 8545388 8545859 + 18 NA promoter-TSS (FBgn0002719) protein_coding-promoter-TSS (FBgn0002719) -109 FBgn0002719 FBgn0002719 FBtr0330025 Men protein_coding CG8478-S2-modencode_R2_peak_3079 chrX 12490441 12490519 + 18 NA promoter-TSS (FBgn0030403) protein_coding-promoter-TSS (FBgn0030403) 400 FBgn0052654 FBgn0052654 FBtr0113445 Sec16 protein_coding CG8478-S2-modencode_R2_peak_1087 chr2R 17200685 17200885 + 18 NA promoter-TSS (FBgn0034618) protein_coding-promoter-TSS (FBgn0034618) 876 FBgn0034618 FBgn0034618 FBtr0071601 CG9485 protein_coding CG8478-S2-modencode_R2_peak_2627 chrUextra 18119497 18119672 + 18 NA NA NA NA NA CG8478-S2-modencode_R2_peak_2461 chr3R 25575190 25575453 + 18 NA promoter-TSS (FBgn0020235) protein_coding-promoter-TSS (FBgn0020235) 380 FBgn0260990 FBgn0260990 FBtr0085477 yata protein_coding CG8478-S2-modencode_R2_peak_668 chr2R 6754737 6755594 + 18 NA intron (FBgn0050015, intron 1 of 7) protein_coding-intron (FBgn0050015, intron 1 of 7) 7732 FBgn0050016 FBgn0050016 FBtr0088241 CG30016 protein_coding CG8478-S2-modencode_R2_peak_2011 chr3R 8251668 8251984 + 18 NA promoter-TSS (FBgn0038045) protein_coding-promoter-TSS (FBgn0038045) -187 FBgn0004103 FBgn0004103 FBtr0082595 Pp1-87B protein_coding CG8478-S2-modencode_R2_peak_1854 chr3R 3317336 3317621 + 18 NA promoter-TSS (FBgn0015569) protein_coding-promoter-TSS (FBgn0015569) 1515 FBgn0261508 FBgn0261508 FBtr0302437 CG42656 protein_coding CG8478-S2-modencode_R2_peak_3266 chrX 19158449 19158779 + 18 NA intron (FBgn0040068, intron 3 of 9) protein_coding-intron (FBgn0040068, intron 3 of 9) 2761 FBgn0040068 FBgn0040068 FBtr0333759 vav protein_coding CG8478-S2-modencode_R2_peak_2065 chr3R 10936610 10936686 + 18 NA intron (FBgn0261859, intron 2 of 9) protein_coding-intron (FBgn0261859, intron 2 of 9) -15315 FBgn0038286 FBgn0038286 FBtr0113236 CG6966 protein_coding CG8478-S2-modencode_R2_peak_593 chr2R 5573268 5573493 + 18 NA Intergenic Intergenic -2024 FBgn0033438 FBgn0033438 FBtr0088501 Mmp2 protein_coding CG8478-S2-modencode_R2_peak_924 chr2R 13307991 13308408 + 18 NA exon (FBgn0022029, exon 1 of 7) protein_coding-exon (FBgn0022029, exon 1 of 7) 261 FBgn0022029 FBgn0022029 FBtr0086915 l(2)k01209 protein_coding CG8478-S2-modencode_R2_peak_1552 chr3L 14048189 14048337 + 18 NA intron (FBgn0052138, intron 1 of 9) protein_coding-intron (FBgn0052138, intron 1 of 8) 1467 FBgn0052138 FBgn0052138 FBtr0334053 CG32138 protein_coding CG8478-S2-modencode_R2_peak_1856 chr3R 3349650 3349872 + 18 NA promoter-TSS (FBgn0015575) protein_coding-promoter-TSS (FBgn0015575) -285 FBgn0015575 FBgn0015575 FBtr0081550 alpha-Est7 protein_coding CG8478-S2-modencode_R2_peak_2483 chr3R 26103774 26103899 + 18 NA exon (FBgn0010113, exon 1 of 6) protein_coding-exon (FBgn0010113, exon 1 of 6) 180 FBgn0010113 FBgn0010113 FBtr0085620 hdc protein_coding CG8478-S2-modencode_R2_peak_2048 chr3R 10115990 10116194 + 18 NA promoter-TSS (FBgn0038220) protein_coding-promoter-TSS (FBgn0038220) 1096 FBgn0038220 FBgn0038220 FBtr0309998 CG12207 protein_coding CG8478-S2-modencode_R2_peak_2922 chrX 8799374 8800243 + 18 NA exon (FBgn0011586, exon 1 of 3) protein_coding-exon (FBgn0011586, exon 1 of 3) 215 FBgn0011586 FBgn0011586 FBtr0071266 e(r) protein_coding CG8478-S2-modencode_R2_peak_2022 chr3R 8549645 8549779 + 18 NA Intergenic Intergenic -4198 FBgn0002719 FBgn0002719 FBtr0330025 Men protein_coding CG8478-S2-modencode_R2_peak_2248 chr3R 17325132 17325540 + 18 NA promoter-TSS (FBgn0004863) protein_coding-promoter-TSS (FBgn0004863) -641 FBgn0004863 FBgn0004863 FBtr0084111 C15 protein_coding CG8478-S2-modencode_R2_peak_1644 chr3L 17583507 17583999 + 18 NA intron (FBgn0000567, intron 5 of 7) protein_coding-intron (FBgn0000567, intron 5 of 7) -24491 FBgn0086080 FBgn0086080 FBtr0114356 snoRNA:Me28S-A576 snoRNA CG8478-S2-modencode_R2_peak_553 chr2R 3911920 3912074 + 18 NA Intergenic Intergenic 5436 FBgn0263970 FBgn0263970 FBtr0329886 CR43724 ncRNA CG8478-S2-modencode_R2_peak_1044 chr2R 15310858 15311271 + 18 NA intron (FBgn0263391, intron 1 of 12) protein_coding-intron (FBgn0263391, intron 2 of 11) 1387 FBgn0263391 FBgn0263391 FBtr0309107 hts protein_coding CG8478-S2-modencode_R2_peak_540 chr2R 3646202 3646282 + 18 NA exon (FBgn0050497, exon 1 of 2) protein_coding-exon (FBgn0050497, exon 1 of 2) -13440 FBgn0050497 FBgn0050497 FBtr0088932 CG30497 protein_coding CG8478-S2-modencode_R2_peak_1460 chr3L 9686374 9686736 + 18 NA intron (FBgn0036030, intron 2 of 7) protein_coding-intron (FBgn0036030, intron 2 of 6) 3245 FBgn0036030 FBgn0036030 FBtr0333856 CG6767 protein_coding CG8478-S2-modencode_R2_peak_3176 chrX 15478181 15478310 + 18 NA intron (FBgn0030660, intron 1 of 2) protein_coding-intron (FBgn0030660, intron 1 of 2) 1051 FBgn0030660 FBgn0030660 FBtr0074047 CG8097 protein_coding CG8478-S2-modencode_R2_peak_1887 chr3R 4645909 4646130 + 18 NA promoter-TSS (FBgn0262604) protein_coding-promoter-TSS (FBgn0262604) 359 FBgn0037636 FBgn0037636 FBtr0081932 CG9821 protein_coding CG8478-S2-modencode_R2_peak_310 chr2L 13550270 13550380 + 18 NA promoter-TSS (FBgn0023407) protein_coding-promoter-TSS (FBgn0023407) 161 FBgn0259984 FBgn0259984 FBtr0301412 kuz protein_coding CG8478-S2-modencode_R2_peak_756 chr2R 8148911 8149197 + 18 NA TTS (FBgn0264501) ncRNA-TTS (FBgn0264501) 2140 FBgn0264501 FBgn0264501 FBtr0332931 CR43900 ncRNA CG8478-S2-modencode_R2_peak_1963 chr3R 5926390 5926754 + 18 NA promoter-TSS (FBgn0262459) pre_miRNA-promoter-TSS (FBgn0262459) -102 FBgn0262459 FBgn0262459 FBtr0304500 mir-34 pre_miRNA CG8478-S2-modencode_R2_peak_1287 chr3L 3248051 3248200 + 18 NA exon (FBgn0263246, exon 1 of 2) protein_coding-exon (FBgn0263246, exon 1 of 2) 110 FBgn0263246 FBgn0263246 FBtr0308062 CG43389 protein_coding CG8478-S2-modencode_R2_peak_477 chr2R 2048994 2049156 + 18 NA promoter-TSS (FBgn0011957) tRNA-promoter-TSS (FBgn0011957) 35 FBgn0011957 FBgn0011957 FBtr0085980 tRNA:R2:42Ac tRNA CG8478-S2-modencode_R2_peak_2404 chr3R 22084379 22084449 + 18 NA promoter-TSS (FBgn0000064) protein_coding-promoter-TSS (FBgn0000064) 2899 FBgn0000064 FBgn0000064 FBtr0085000 Ald protein_coding CG8478-S2-modencode_R2_peak_1716 chr3L 19780849 19780994 + 18 NA intron (FBgn0261688, intron 2 of 17) protein_coding-intron (FBgn0261360, intron 2 of 17) 5748 FBgn0261688 FBgn0261688 FBtr0302280 Gyc76C protein_coding CG8478-S2-modencode_R2_peak_2721 chrX 3146754 3146981 + 18 NA intron (FBgn0000479, intron 4 of 14) protein_coding-intron (FBgn0000479, intron 4 of 14) 3333 FBgn0003374 FBgn0003374 FBtr0070524 Sgs4 protein_coding CG8478-S2-modencode_R2_peak_390 chr2L 19161645 19161771 + 18 NA intron (FBgn0010300, intron 1 of 2) protein_coding-intron (FBgn0010300, intron 2 of 3) 19994 FBgn0032763 FBgn0032763 FBtr0081233 CG17568 protein_coding CG8478-S2-modencode_R2_peak_842 chr2R 10849994 10850124 + 18 NA promoter-TSS (FBgn0033987) protein_coding-promoter-TSS (FBgn0033987) -3126 FBgn0033987 FBgn0033987 FBtr0087411 ckn protein_coding CG8478-S2-modencode_R2_peak_634 chr2R 6417379 6417469 + 18 NA intron (FBgn0005630, intron 5 of 6) protein_coding-intron (FBgn0005630, intron 5 of 5) 5159 FBgn0005630 FBgn0005630 FBtr0089362 lola protein_coding CG8478-S2-modencode_R2_peak_3069 chrX 11687195 11687575 + 18 NA intron (FBgn0000259, intron 1 of 6) protein_coding-intron (FBgn0000259, intron 1 of 6) 473 FBgn0000259 FBgn0000259 FBtr0299569 CkIIbeta protein_coding CG8478-S2-modencode_R2_peak_1392 chr3L 7804610 7804867 + 18 NA TTS (FBgn0016694) protein_coding-TTS (FBgn0016694) -1813 FBgn0052369 FBgn0052369 FBtr0076783 CG32369 protein_coding CG8478-S2-modencode_R2_peak_1536 chr3L 12426727 12427371 + 18 NA Intergenic Intergenic -1281 FBgn0036285 FBgn0036285 FBtr0332087 toe protein_coding CG8478-S2-modencode_R2_peak_2321 chr3R 19840055 19840335 + 18 NA intron (FBgn0020647, intron 2 of 10) protein_coding-intron (FBgn0020647, intron 2 of 11) -8445 FBgn0020647 FBgn0020647 FBtr0301419 KrT95D protein_coding CG8478-S2-modencode_R2_peak_2391 chr3R 21932653 21932762 + 18 NA exon (FBgn0051324, exon 1 of 3) protein_coding-exon (FBgn0051324, exon 1 of 3) -8274 FBgn0039411 FBgn0039411 FBtr0113293 dys protein_coding CG8478-S2-modencode_R2_peak_1991 chr3R 7475924 7476119 + 18 NA promoter-TSS (FBgn0037926) protein_coding-promoter-TSS (FBgn0037926) -689 FBgn0037926 FBgn0037926 FBtr0082420 Elp1 protein_coding CG8478-S2-modencode_R2_peak_214 chr2L 8709591 8709736 + 18 NA promoter-TSS (FBgn0004914) protein_coding-promoter-TSS (FBgn0004914) 4091 FBgn0032061 FBgn0032061 FBtr0079731 CG9314 protein_coding CG8478-S2-modencode_R2_peak_1967 chr3R 5958828 5959764 + 18 NA exon (FBgn0004889, exon 2 of 5) protein_coding-exon (FBgn0004889, exon 2 of 5) 589 FBgn0004889 FBgn0004889 FBtr0082192 tws protein_coding CG8478-S2-modencode_R2_peak_571 chr2R 4532580 4532827 + 18 NA Intergenic Intergenic -4437 FBgn0003892 FBgn0003892 FBtr0089427 ptc protein_coding CG8478-S2-modencode_R2_peak_1396 chr3L 7845619 7845701 + 18 NA intron (FBgn0016694, intron 1 of 5) protein_coding-intron (FBgn0016694, intron 1 of 4) 14809 FBgn0016694 FBgn0016694 FBtr0332080 Pdp1 protein_coding CG8478-S2-modencode_R2_peak_1969 chr3R 6038653 6038761 + 18 NA promoter-TSS (FBgn0025879) protein_coding-promoter-TSS (FBgn0025879) 19 FBgn0025879 FBgn0025879 FBtr0082245 Timp protein_coding CG8478-S2-modencode_R2_peak_2091 chr3R 11818917 11819298 + 18 NA promoter-TSS (FBgn0003507) protein_coding-promoter-TSS (FBgn0003507) 7184 FBgn0003507 FBgn0003507 FBtr0083216 srp protein_coding CG8478-S2-modencode_R2_peak_643 chr2R 6442754 6443336 + 18 NA Intergenic Intergenic -2348 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding CG8478-S2-modencode_R2_peak_2702 chrX 2202563 2202786 + 18 NA intron (FBgn0003079, intron 2 of 5) protein_coding-intron (FBgn0003079, intron 2 of 5) 12757 FBgn0003079 FBgn0003079 FBtr0111025 phl protein_coding CG8478-S2-modencode_R2_peak_2286 chr3R 19122929 19123090 + 18 NA intron (FBgn0003118, intron 6 of 8) protein_coding-intron (FBgn0003118, intron 4 of 6) -7098 FBgn0039071 FBgn0039071 FBtr0084382 CG4434 protein_coding CG8478-S2-modencode_R2_peak_2301 chr3R 19162642 19163158 + 18 NA intron (FBgn0003118, intron 3 of 8) protein_coding-intron (FBgn0003118, intron 3 of 8) 8984 FBgn0003118 FBgn0003118 FBtr0089715 pnt protein_coding CG8478-S2-modencode_R2_peak_2963 chrX 9479497 9479801 + 18 NA promoter-TSS (FBgn0001186) protein_coding-promoter-TSS (FBgn0001186) -274 FBgn0001186 FBgn0001186 FBtr0071362 Hex-A protein_coding CG8478-S2-modencode_R2_peak_1248 chr3L 1349958 1350636 + 18 NA promoter-TSS (FBgn0029514) protein_coding-promoter-TSS (FBgn0029514) -819 FBgn0029514 FBgn0029514 FBtr0310160 CG9166 protein_coding CG8478-S2-modencode_R2_peak_3284 chrX 19777723 19777980 + 18 NA intron (FBgn0052529, intron 1 of 6) protein_coding-intron (FBgn0052529, intron 4 of 8) 6242 FBgn0086782 FBgn0086782 FBtr0074802 amn protein_coding CG8478-S2-modencode_R2_peak_1420 chr3L 8179932 8180551 + 18 NA promoter-TSS (FBgn0035849) protein_coding-promoter-TSS (FBgn0035849) 146 FBgn0035850 FBgn0035850 FBtr0321321 Atg18 protein_coding CG8478-S2-modencode_R2_peak_1897 chr3R 4946822 4946926 + 18 NA intron (FBgn0003165, intron 1 of 6) protein_coding-intron (FBgn0003165, intron 8 of 12) 36798 FBgn0003165 FBgn0003165 FBtr0305197 pum protein_coding CG8478-S2-modencode_R2_peak_1119 chr2R 18003964 18004321 + 18 NA promoter-TSS (FBgn0243516) protein_coding-promoter-TSS (FBgn0243516) -299 FBgn0243516 FBgn0243516 FBtr0302295 Vrp1 protein_coding CG8478-S2-modencode_R2_peak_706 chr2R 7073189 7073913 + 18 NA intron (FBgn0003396, intron 1 of 7) protein_coding-intron (FBgn0003396, intron 1 of 7) 12243 FBgn0003396 FBgn0003396 FBtr0088100 shn protein_coding CG8478-S2-modencode_R2_peak_574 chr2R 4536927 4537468 + 18 NA promoter-TSS (FBgn0003892) protein_coding-promoter-TSS (FBgn0003892) 57 FBgn0003892 FBgn0003892 FBtr0089427 ptc protein_coding CG8478-S2-modencode_R2_peak_2778 chrX 3668232 3668479 + 18 NA intron (FBgn0086899, intron 1 of 7) protein_coding-intron (FBgn0086899, intron 3 of 9) 1682 FBgn0086899 FBgn0086899 FBtr0070596 tlk protein_coding CG8478-S2-modencode_R2_peak_1541 chr3L 12683959 12684180 + 18 NA Intergenic Intergenic -2670 FBgn0014343 FBgn0014343 FBtr0075912 mirr protein_coding CG8478-S2-modencode_R2_peak_506 chr2R 2880124 2880585 + 18 NA promoter-TSS (FBgn0050159) protein_coding-promoter-TSS (FBgn0050159) 163 FBgn0050159 FBgn0050159 FBtr0089760 CG30159 protein_coding CG8478-S2-modencode_R2_peak_83 chr2L 3172842 3173142 + 18 NA promoter-TSS (FBgn0031512) protein_coding-promoter-TSS (FBgn0031512) 92 FBgn0011984 FBgn0011984 FBtr0077613 tRNA:S7:23Ea tRNA CG8478-S2-modencode_R2_peak_1824 chr3R 2235424 2235614 + 18 NA intron (FBgn0264495, intron 2 of 9) protein_coding-intron (FBgn0264495, intron 2 of 8) 2940 FBgn0264495 FBgn0264495 FBtr0303788 gpp protein_coding CG8478-S2-modencode_R2_peak_1548 chr3L 13482056 13482385 + 18 NA intron (FBgn0036373, intron 2 of 3) protein_coding-intron (FBgn0036373, intron 2 of 3) -2840 FBgn0036372 FBgn0036372 FBtr0075819 CG10083 protein_coding CG8478-S2-modencode_R2_peak_2949 chrX 9394343 9394726 + 18 NA promoter-TSS (FBgn0261260) protein_coding-promoter-TSS (FBgn0261260) -4313 FBgn0261260 FBgn0261260 FBtr0302154 mgl protein_coding CG8478-S2-modencode_R2_peak_258 chr2L 11063596 11063792 + 17 NA intron (FBgn0032330, intron 1 of 6) protein_coding-intron (FBgn0032330, intron 1 of 6) 3303 FBgn0032330 FBgn0032330 FBtr0331198 Samuel protein_coding CG8478-S2-modencode_R2_peak_1671 chr3L 18008312 18008444 + 17 NA intron (FBgn0000568, intron 3 of 7) protein_coding-intron (FBgn0000568, intron 1 of 5) -12200 FBgn0086081 FBgn0086081 FBtr0114357 snoRNA:Me28S-A30 snoRNA CG8478-S2-modencode_R2_peak_2170 chr3R 14052034 14052253 + 17 NA promoter-TSS (FBgn0262559) protein_coding-promoter-TSS (FBgn0262559) 30 FBgn0262559 FBgn0262559 FBtr0083563 Mdh2 protein_coding CG8478-S2-modencode_R2_peak_1742 chr3L 21034686 21035169 + 17 NA intron (FBgn0026179, intron 1 of 5) protein_coding-intron (FBgn0026179, intron 1 of 5) -6399 FBgn0026179 FBgn0026179 FBtr0111038 siz protein_coding CG8478-S2-modencode_R2_peak_3138 chrX 13283510 13283644 + 17 NA TTS (FBgn0030481) protein_coding-TTS (FBgn0030481) 1945 FBgn0030481 FBgn0030481 FBtr0073776 CG1662 protein_coding CG8478-S2-modencode_R2_peak_3302 chrX 21152328 21153049 + 17 NA promoter-TSS (FBgn0052521) protein_coding-promoter-TSS (FBgn0052521) -508 FBgn0052521 FBgn0052521 FBtr0310654 CG32521 protein_coding CG8478-S2-modencode_R2_peak_2856 chrX 6697362 6697437 + 17 NA promoter-TSS (FBgn0029903) protein_coding-promoter-TSS (FBgn0029903) 180 FBgn0259228 FBgn0259228 FBtr0299795 C3G protein_coding CG8478-S2-modencode_R2_peak_1394 chr3L 7828392 7828760 + 17 NA intron (FBgn0016694, intron 1 of 5) protein_coding-intron (FBgn0016694, intron 1 of 4) -25651 FBgn0052369 FBgn0052369 FBtr0076783 CG32369 protein_coding CG8478-S2-modencode_R2_peak_43 chr2L 1420336 1420634 + 17 NA promoter-TSS (FBgn0002543) protein_coding-promoter-TSS (FBgn0002543) -36 FBgn0002543 FBgn0002543 FBtr0329985 lea protein_coding CG8478-S2-modencode_R2_peak_658 chr2R 6489195 6489768 + 17 NA intron (FBgn0263102, intron 1 of 6) protein_coding-intron (FBgn0263102, intron 3 of 9) -20227 FBgn0033538 FBgn0033538 FBtr0113063 CG11883 protein_coding CG8478-S2-modencode_R2_peak_1203 chr3L 545522 545879 + 17 NA promoter-TSS (FBgn0035142) protein_coding-promoter-TSS (FBgn0035142) -2769 FBgn0035141 FBgn0035141 FBtr0072564 Cypl protein_coding CG8478-S2-modencode_R2_peak_1661 chr3L 17955286 17955682 + 17 NA promoter-TSS (FBgn0000568) protein_coding-promoter-TSS (FBgn0000568) 28352 FBgn0262793 FBgn0262793 FBtr0305909 CG43174 protein_coding CG8478-S2-modencode_R2_peak_49 chr2L 1657036 1657231 + 17 NA intron (FBgn0086758, intron 2 of 6) protein_coding-intron (FBgn0086758, intron 2 of 6) 5875 FBgn0086758 FBgn0086758 FBtr0077878 chinmo protein_coding CG8478-S2-modencode_R2_peak_2009 chr3R 8224345 8224818 + 17 NA promoter-TSS (FBgn0038034) pseudogene-promoter-TSS (FBgn0038034) 70 FBgn0038034 FBgn0038034 FBtr0082602 Cyp9f3Psi pseudogene CG8478-S2-modencode_R2_peak_3296 chrX 20663219 20663312 + 17 NA intron (FBgn0085387, intron 7 of 11) protein_coding-intron (FBgn0085387, intron 4 of 8) -11018 FBgn0052507 FBgn0052507 FBtr0302987 CG32507 protein_coding CG8478-S2-modencode_R2_peak_1932 chr3R 5359176 5359694 + 17 NA promoter-TSS (FBgn0000244) protein_coding-promoter-TSS (FBgn0000244) -701 FBgn0000244 FBgn0000244 FBtr0301093 by protein_coding CG8478-S2-modencode_R2_peak_148 chr2L 6708668 6708886 + 17 NA promoter-TSS (FBgn0031850) protein_coding-promoter-TSS (FBgn0031850) 7409 FBgn0025595 FBgn0025595 FBtr0332331 GRHR protein_coding CG8478-S2-modencode_R2_peak_1577 chr3L 15101302 15101711 + 17 NA exon (FBgn0264702, exon 2 of 2) ncRNA-exon (FBgn0264702, exon 2 of 2) 529 FBgn0264702 FBgn0264702 FBtr0333936 CR43971 ncRNA CG8478-S2-modencode_R2_peak_1701 chr3L 18834410 18835043 + 17 NA promoter-TSS (FBgn0036816) protein_coding-promoter-TSS (FBgn0036816) 47 FBgn0052027 FBgn0052027 FBtr0307116 CR32027 ncRNA CG8478-S2-modencode_R2_peak_2140 chr3R 12683413 12683612 + 17 NA intron (FBgn0263610, intron 5 of 7) ncRNA-intron (FBgn0263610, intron 4 of 6) 1475 FBgn0262462 FBgn0262462 FBtr0304522 mir-iab-4 pre_miRNA CG8478-S2-modencode_R2_peak_2029 chr3R 8843637 8843916 + 17 NA promoter-TSS (FBgn0020496) protein_coding-promoter-TSS (FBgn0020496) 6388 FBgn0020496 FBgn0020496 FBtr0082702 CtBP protein_coding CG8478-S2-modencode_R2_peak_308 chr2L 13513396 13513845 + 17 NA intron (FBgn0023407, intron 3 of 6) protein_coding-intron (FBgn0023407, intron 3 of 6) -14221 FBgn0053640 FBgn0053640 FBtr0332506 CG33640 protein_coding CG8478-S2-modencode_R2_peak_2704 chrX 2228075 2228979 + 17 NA exon (FBgn0044047, exon 1 of 3) protein_coding-exon (FBgn0044047, exon 1 of 3) -2086 FBgn0044047 FBgn0044047 FBtr0333731 Ilp6 protein_coding CG8478-S2-modencode_R2_peak_2916 chrX 8583229 8583402 + 17 NA TTS (FBgn0030056) protein_coding-TTS (FBgn0030056) 764 FBgn0030057 FBgn0030057 FBtr0071225 Ppt1 protein_coding CG8478-S2-modencode_R2_peak_1097 chr2R 17390168 17390583 + 17 NA intron (FBgn0043070, intron 1 of 5) protein_coding-intron (FBgn0043070, intron 1 of 6) 773 FBgn0043070 FBgn0043070 FBtr0089706 MESK2 protein_coding CG8478-S2-modencode_R2_peak_1464 chr3L 9709591 9709694 + 17 NA promoter-TSS (FBgn0065081) ncRNA-promoter-TSS (FBgn0065081) -261 FBgn0065081 FBgn0065081 FBtr0091797 snmRNA:838 ncRNA CG8478-S2-modencode_R2_peak_3315 chrX 22410676 22410820 + 17 NA exon (FBgn0044872, exon 2 of 2) protein_coding-exon (FBgn0044872, exon 2 of 2) 1822 FBgn0044872 FBgn0044872 FBtr0299926 FucTC protein_coding CG8478-S2-modencode_R2_peak_753 chr2R 7550328 7550468 + 17 NA intron (FBgn0044020, intron 3 of 3) protein_coding-intron (FBgn0044020, intron 2 of 2) -2258 FBgn0011916 FBgn0011916 FBtr0088086 tRNA:M2:48Bb tRNA CG8478-S2-modencode_R2_peak_2571 chr4 1042766 1043203 + 17 NA exon (FBgn0025741, exon 2 of 10) protein_coding-exon (FBgn0025741, exon 2 of 10) 4736 FBgn0025741 FBgn0025741 FBtr0100296 plexA protein_coding CG8478-S2-modencode_R2_peak_3251 chrX 18782199 18782269 + 17 NA TTS (FBgn0030973) protein_coding-TTS (FBgn0030973) 3699 FBgn0030973 FBgn0030973 FBtr0074647 CG7332 protein_coding CG8478-S2-modencode_R2_peak_202 chr2L 8461608 8462047 + 17 NA intron (FBgn0026718, intron 1 of 3) protein_coding-intron (FBgn0026718, intron 1 of 2) 2163 FBgn0026718 FBgn0026718 FBtr0079704 fu12 protein_coding CG8478-S2-modencode_R2_peak_1054 chr2R 15355398 15356000 + 17 NA TTS (FBgn0260934) protein_coding-TTS (FBgn0260934) 11999 FBgn0002716 FBgn0002716 FBtr0086461 mei-W68 protein_coding CG8478-S2-modencode_R2_peak_3201 chrX 16227222 16227881 + 17 NA promoter-TSS (FBgn0011764) protein_coding-promoter-TSS (FBgn0011764) -124 FBgn0030743 FBgn0030743 FBtr0074235 CG9921 protein_coding CG8478-S2-modencode_R2_peak_780 chr2R 8929656 8930057 + 17 NA Intergenic Intergenic 4937 FBgn0033788 FBgn0033788 FBtr0087797 CG13323 protein_coding CG8478-S2-modencode_R2_peak_1808 chr3R 1417962 1418324 + 17 NA promoter-TSS (FBgn0014366) protein_coding-promoter-TSS (FBgn0014366) 658 FBgn0015324 FBgn0015324 FBtr0078701 Vha26 protein_coding CG8478-S2-modencode_R2_peak_730 chr2R 7480667 7481102 + 17 NA promoter-TSS (FBgn0033636) protein_coding-promoter-TSS (FBgn0033636) -1894 FBgn0086658 FBgn0086658 FBtr0091640 snoRNA:Psi28S-1180 snoRNA CG8478-S2-modencode_R2_peak_761 chr2R 8500738 8500931 + 17 NA intron (FBgn0004435, intron 1 of 8) protein_coding-intron (FBgn0004435, intron 1 of 9) 589 FBgn0004435 FBgn0004435 FBtr0087833 Galpha49B protein_coding CG8478-S2-modencode_R2_peak_1964 chr3R 5929332 5929467 + 17 NA TTS (FBgn0028734) protein_coding-TTS (FBgn0028734) 2725 FBgn0262459 FBgn0262459 FBtr0304500 mir-34 pre_miRNA CG8478-S2-modencode_R2_peak_380 chr2L 18859299 18859392 + 17 NA promoter-TSS (FBgn0032720) protein_coding-promoter-TSS (FBgn0032720) -99 FBgn0032720 FBgn0032720 FBtr0089318 mRpL13 protein_coding CG8478-S2-modencode_R2_peak_1731 chr3L 20341366 20341712 + 17 NA promoter-TSS (FBgn0036974) protein_coding-promoter-TSS (FBgn0036974) 84 FBgn0036974 FBgn0036974 FBtr0331817 eRF1 protein_coding CG8478-S2-modencode_R2_peak_703 chr2R 7061050 7061201 + 17 NA promoter-TSS (FBgn0003396) protein_coding-promoter-TSS (FBgn0003396) -183 FBgn0003396 FBgn0003396 FBtr0088100 shn protein_coding CG8478-S2-modencode_R2_peak_1785 chr3LHet 1734109 1734179 + 17 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1371 chr3L 5919673 5920112 + 17 NA promoter-TSS (FBgn0053523) protein_coding-promoter-TSS (FBgn0053523) 2739 FBgn0053523 FBgn0053523 FBtr0091476 CG33523 protein_coding CG8478-S2-modencode_R2_peak_2617 chrUextra 3080888 3081185 + 17 NA NA NA NA NA CG8478-S2-modencode_R2_peak_2392 chr3R 21932963 21933307 + 17 NA intron (FBgn0051324, intron 1 of 2) protein_coding-intron (FBgn0051324, intron 1 of 2) -8702 FBgn0039411 FBgn0039411 FBtr0113293 dys protein_coding CG8478-S2-modencode_R2_peak_882 chr2R 12066675 12067628 + 17 NA intron (FBgn0015754, intron 1 of 7) protein_coding-intron (FBgn0015754, intron 1 of 7) 820 FBgn0015754 FBgn0015754 FBtr0087241 Lis-1 protein_coding CG8478-S2-modencode_R2_peak_352 chr2L 16720721 16721301 + 17 NA intron (FBgn0000409, intron 1 of 1) protein_coding-intron (FBgn0000409, intron 1 of 1) 1137 FBgn0000409 FBgn0000409 FBtr0080889 Cyt-c-p protein_coding CG8478-S2-modencode_R2_peak_2000 chr3R 7774420 7774873 + 17 NA promoter-TSS (FBgn0051211) protein_coding-promoter-TSS (FBgn0051211) 205 FBgn0037963 FBgn0037963 FBtr0082513 Cad87A protein_coding CG8478-S2-modencode_R2_peak_2015 chr3R 8528162 8528386 + 17 NA intron (FBgn0016693, intron 1 of 2) protein_coding-intron (FBgn0016693, intron 2 of 3) -2542 FBgn0038080 FBgn0038080 FBtr0082656 CG12279 protein_coding CG8478-S2-modencode_R2_peak_1569 chr3L 14593734 14593919 + 17 NA Intergenic Intergenic -1186 FBgn0040318 FBgn0040318 FBtr0075720 HGTX protein_coding CG8478-S2-modencode_R2_peak_3137 chrX 13277858 13278110 + 17 NA intron (FBgn0030479, intron 1 of 1) protein_coding-intron (FBgn0030479, intron 1 of 1) 922 FBgn0030479 FBgn0030479 FBtr0304001 Rbp1-like protein_coding CG8478-S2-modencode_R2_peak_3005 chrX 10219419 10219636 + 17 NA promoter-TSS (FBgn0030189) protein_coding-promoter-TSS (FBgn0030189) -970 FBgn0030189 FBgn0030189 FBtr0071441 CG2909 protein_coding CG8478-S2-modencode_R2_peak_1660 chr3L 17954886 17954964 + 17 NA promoter-TSS (FBgn0000568) protein_coding-promoter-TSS (FBgn0000568) 27793 FBgn0262793 FBgn0262793 FBtr0305909 CG43174 protein_coding CG8478-S2-modencode_R2_peak_2744 chrX 3327702 3327852 + 17 NA intron (FBgn0029657, intron 1 of 3) protein_coding-intron (FBgn0029657, intron 1 of 3) 2063 FBgn0029658 FBgn0029658 FBtr0070532 CG14269 protein_coding CG8478-S2-modencode_R2_peak_2774 chrX 3656399 3656546 + 17 NA intron (FBgn0086899, intron 2 of 9) protein_coding-intron (FBgn0086899, intron 2 of 9) -10201 FBgn0086899 FBgn0086899 FBtr0070596 tlk protein_coding CG8478-S2-modencode_R2_peak_2240 chr3R 17012918 17013273 + 17 NA intron (FBgn0264357, intron 7 of 12) protein_coding-intron (FBgn0264357, intron 7 of 12) -19168 FBgn0260004 FBgn0260004 FBtr0084027 Snmp1 protein_coding CG8478-S2-modencode_R2_peak_763 chr2R 8619823 8620358 + 17 NA intron (FBgn0261545, intron 2 of 8) protein_coding-intron (FBgn0261545, intron 2 of 7) 20351 FBgn0033773 FBgn0033773 FBtr0087865 mos protein_coding CG8478-S2-modencode_R2_peak_549 chr2R 3876605 3876747 + 17 NA exon (FBgn0033247, exon 1 of 4) protein_coding-exon (FBgn0033247, exon 1 of 4) 504 FBgn0033247 FBgn0033247 FBtr0088862 Nup44A protein_coding CG8478-S2-modencode_R2_peak_1422 chr3L 8392194 8392546 + 17 NA intron (FBgn0035888, intron 2 of 4) protein_coding-intron (FBgn0035888, intron 2 of 4) 3270 FBgn0035888 FBgn0035888 FBtr0307378 CG7120 protein_coding CG8478-S2-modencode_R2_peak_1294 chr3L 3386539 3387300 + 17 NA Intergenic Intergenic 8651 FBgn0035445 FBgn0035445 FBtr0073077 CG12014 protein_coding CG8478-S2-modencode_R2_peak_2706 chrX 2230409 2230636 + 17 NA intron (FBgn0003079, intron 2 of 5) protein_coding-intron (FBgn0003079, intron 2 of 5) -4081 FBgn0044047 FBgn0044047 FBtr0333731 Ilp6 protein_coding CG8478-S2-modencode_R2_peak_692 chr2R 6983796 6984346 + 17 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -9927 FBgn0262818 FBgn0262818 FBtr0306050 CG43189 protein_coding CG8478-S2-modencode_R2_peak_2529 chr3R 27232791 27232910 + 17 NA intron (FBgn0261988, intron 1 of 12) protein_coding-intron (FBgn0261988, intron 1 of 12) 1879 FBgn0261988 FBgn0261988 FBtr0085788 Gprk2 protein_coding CG8478-S2-modencode_R2_peak_1858 chr3R 3619764 3619841 + 17 NA promoter-TSS (FBgn0037518) protein_coding-promoter-TSS (FBgn0037518) -129 FBgn0037518 FBgn0037518 FBtr0081745 CG2641 protein_coding CG8478-S2-modencode_R2_peak_1257 chr3L 2417368 2417681 + 17 NA promoter-TSS (FBgn0261551) protein_coding-promoter-TSS (FBgn0261551) -431 FBgn0261551 FBgn0261551 FBtr0302675 CG42669 protein_coding CG8478-S2-modencode_R2_peak_3046 chrX 10700902 10701067 + 17 NA promoter-TSS (FBgn0262735) protein_coding-promoter-TSS (FBgn0262735) 7142 FBgn0262735 FBgn0262735 FBtr0073419 Imp protein_coding CG8478-S2-modencode_R2_peak_526 chr2R 3501674 3502180 + 17 NA promoter-TSS (FBgn0033196) protein_coding-promoter-TSS (FBgn0033196) 6289 FBgn0033196 FBgn0033196 FBtr0088950 CG1358 protein_coding CG8478-S2-modencode_R2_peak_2442 chr3R 24888752 24888969 + 17 NA promoter-TSS (FBgn0039633) protein_coding-promoter-TSS (FBgn0039633) 21 FBgn0039632 FBgn0039632 FBtr0085417 Cul-5 protein_coding CG8478-S2-modencode_R2_peak_1311 chr3L 3434294 3434472 + 17 NA intron (FBgn0026259, intron 7 of 8) protein_coding-intron (FBgn0026259, intron 7 of 8) -16456 FBgn0014388 FBgn0014388 FBtr0073146 sty protein_coding CG8478-S2-modencode_R2_peak_1062 chr2R 15615553 15615810 + 17 NA promoter-TSS (FBgn0050220) tRNA-promoter-TSS (FBgn0050220) 83 FBgn0050454 FBgn0050454 FBtr0086445 tRNA:CR30454 tRNA CG8478-S2-modencode_R2_peak_1466 chr3L 9817157 9817646 + 17 NA promoter-TSS (FBgn0044048) protein_coding-promoter-TSS (FBgn0044048) -404 FBgn0044048 FBgn0044048 FBtr0076371 Ilp5 protein_coding CG8478-S2-modencode_R2_peak_1209 chr3L 578509 578732 + 17 NA exon (FBgn0035142, exon 11 of 11) protein_coding-exon (FBgn0035142, exon 11 of 11) -2717 FBgn0035143 FBgn0035143 FBtr0072553 Ppm1 protein_coding CG8478-S2-modencode_R2_peak_20 chr2L 494049 494590 + 17 NA intron (FBgn0003963, intron 2 of 8) protein_coding-intron (FBgn0003963, intron 1 of 7) -14631 FBgn0043364 FBgn0043364 FBtr0310030 cbt protein_coding CG8478-S2-modencode_R2_peak_2233 chr3R 16895575 16895758 + 17 NA TTS (FBgn0003257) protein_coding-TTS (FBgn0003257) 3375 FBgn0003257 FBgn0003257 FBtr0084038 r-l protein_coding CG8478-S2-modencode_R2_peak_2256 chr3R 17482250 17483169 + 17 NA intron (FBgn0011766, intron 1 of 7) protein_coding-intron (FBgn0011766, intron 1 of 7) 5971 FBgn0038893 FBgn0038893 FBtr0084116 CG6353 protein_coding CG8478-S2-modencode_R2_peak_760 chr2R 8394193 8394380 + 17 NA intron (FBgn0045063, intron 1 of 5) protein_coding-intron (FBgn0045063, intron 1 of 5) 4025 FBgn0033748 FBgn0033748 FBtr0087945 vis protein_coding CG8478-S2-modencode_R2_peak_810 chr2R 9866082 9866465 + 17 NA intron (FBgn0033889, intron 3 of 9) protein_coding-intron (FBgn0033889, intron 2 of 8) 1397 FBgn0033889 FBgn0033889 FBtr0303989 CG6701 protein_coding CG8478-S2-modencode_R2_peak_1061 chr2R 15614665 15615166 + 17 NA promoter-TSS (FBgn0065076) snoRNA-promoter-TSS (FBgn0065076) 121 FBgn0011849 FBgn0011849 FBtr0086447 tRNA:E4:56Fb tRNA CG8478-S2-modencode_R2_peak_420 chr2L 21051948 21052208 + 17 NA promoter-TSS (FBgn0010395) protein_coding-promoter-TSS (FBgn0010395) -955 FBgn0010395 FBgn0010395 FBtr0081461 betaInt-nu protein_coding CG8478-S2-modencode_R2_peak_2316 chr3R 19747787 19747919 + 17 NA intron (FBgn0016754, intron 1 of 8) protein_coding-intron (FBgn0016754, intron 1 of 8) 842 FBgn0016754 FBgn0016754 FBtr0330380 sba protein_coding CG8478-S2-modencode_R2_peak_2342 chr3R 20390817 20391083 + 17 NA intron (FBgn0039209, intron 1 of 3) protein_coding-intron (FBgn0039209, intron 2 of 4) 8013 FBgn0004190 FBgn0004190 FBtr0084652 snRNA:U6:96Ac snRNA CG8478-S2-modencode_R2_peak_163 chr2L 7437283 7437631 + 17 NA promoter-TSS (FBgn0031914) protein_coding-promoter-TSS (FBgn0031914) -3337 FBgn0031914 FBgn0031914 FBtr0332531 CG5973 protein_coding CG8478-S2-modencode_R2_peak_1070 chr2R 16505267 16505839 + 17 NA promoter-TSS (FBgn0034527) protein_coding-promoter-TSS (FBgn0034527) 149 FBgn0050147 FBgn0050147 FBtr0086256 Hil protein_coding CG8478-S2-modencode_R2_peak_198 chr2L 8422491 8422586 + 17 NA intron (FBgn0027932, intron 1 of 4) protein_coding-intron (FBgn0027932, intron 1 of 5) 6848 FBgn0027932 FBgn0027932 FBtr0079666 Akap200 protein_coding CG8478-S2-modencode_R2_peak_61 chr2L 1987079 1987429 + 17 NA promoter-TSS (FBgn0001125) protein_coding-promoter-TSS (FBgn0001125) 534 FBgn0001125 FBgn0001125 FBtr0077868 Got2 protein_coding CG8478-S2-modencode_R2_peak_1341 chr3L 4227138 4227420 + 17 NA promoter-TSS (FBgn0001257) protein_coding-promoter-TSS (FBgn0001257) 23 FBgn0001257 FBgn0001257 FBtr0073250 ImpL2 protein_coding CG8478-S2-modencode_R2_peak_307 chr2L 13459073 13459336 + 17 NA promoter-TSS (FBgn0261992) protein_coding-promoter-TSS (FBgn0261992) -569 FBgn0261992 FBgn0261992 FBtr0303821 CG42810 protein_coding CG8478-S2-modencode_R2_peak_2546 chr3RHet 788443 788687 + 17 NA NA NA NA NA CG8478-S2-modencode_R2_peak_875 chr2R 12029324 12029710 + 17 NA promoter-TSS (FBgn0050094) protein_coding-promoter-TSS (FBgn0050094) -220 FBgn0050094 FBgn0050094 FBtr0087233 CG30094 protein_coding CG8478-S2-modencode_R2_peak_1434 chr3L 8691283 8691674 + 17 NA Intergenic Intergenic 21847 FBgn0011509 FBgn0011509 FBtr0076598 SrpRbeta protein_coding CG8478-S2-modencode_R2_peak_219 chr2L 8735363 8735978 + 17 NA intron (FBgn0003209, intron 1 of 9) protein_coding-intron (FBgn0003209, intron 1 of 8) 4990 FBgn0003209 FBgn0003209 FBtr0079746 raw protein_coding CG8478-S2-modencode_R2_peak_478 chr2R 2049481 2049832 + 17 NA promoter-TSS (FBgn0011932) tRNA-promoter-TSS (FBgn0011932) -46 FBgn0011932 FBgn0011932 FBtr0085981 tRNA:N5:42Ab tRNA CG8478-S2-modencode_R2_peak_1102 chr2R 17495407 17495827 + 17 NA TTS (FBgn0034639) protein_coding-TTS (FBgn0034639) 425 FBgn0262888 FBgn0262888 FBtr0306302 CG43243 protein_coding CG8478-S2-modencode_R2_peak_1144 chr2R 18576244 18576670 + 17 NA promoter-TSS (FBgn0020257) protein_coding-promoter-TSS (FBgn0020257) 21 FBgn0020257 FBgn0020257 FBtr0330249 ppa protein_coding CG8478-S2-modencode_R2_peak_470 chr2R 2021675 2021745 + 17 NA intron (FBgn0000546, intron 4 of 7) protein_coding-intron (FBgn0000546, intron 3 of 6) -2364 FBgn0000546 FBgn0000546 FBtr0086011 EcR protein_coding CG8478-S2-modencode_R2_peak_2549 chr3RHet 2517314 2517490 + 17 NA NA NA NA NA CG8478-S2-modencode_R2_peak_2354 chr3R 20757703 20757870 + 17 NA promoter-TSS (FBgn0039252) protein_coding-promoter-TSS (FBgn0039252) 47 FBgn0039252 FBgn0039252 FBtr0084748 CG11771 protein_coding CG8478-S2-modencode_R2_peak_1404 chr3L 7859048 7859579 + 17 NA intron (FBgn0016694, intron 1 of 5) protein_coding-intron (FBgn0016694, intron 1 of 4) 1156 FBgn0016694 FBgn0016694 FBtr0332080 Pdp1 protein_coding CG8478-S2-modencode_R2_peak_1843 chr3R 2928659 2928793 + 17 NA intron (FBgn0261238, intron 5 of 9) protein_coding-intron (FBgn0261238, intron 5 of 9) 5413 FBgn0261238 FBgn0261238 FBtr0081614 Alh protein_coding CG8478-S2-modencode_R2_peak_18 chr2L 491905 492524 + 17 NA intron (FBgn0003963, intron 2 of 8) protein_coding-intron (FBgn0003963, intron 1 of 7) -12526 FBgn0043364 FBgn0043364 FBtr0310030 cbt protein_coding CG8478-S2-modencode_R2_peak_479 chr2R 2055958 2056028 + 17 NA intron (FBgn0000546, intron 1 of 6) protein_coding-intron (FBgn0000546, intron 1 of 6) -1119 FBgn0011956 FBgn0011956 FBtr0085985 tRNA:R2:42Ab tRNA CG8478-S2-modencode_R2_peak_938 chr2R 13604889 13605202 + 17 NA exon (FBgn0028494, exon 2 of 4) protein_coding-exon (FBgn0028494, exon 2 of 4) -4799 FBgn0034263 FBgn0034263 FBtr0086859 CG10934 protein_coding CG8478-S2-modencode_R2_peak_3156 chrX 14767874 14767972 + 17 NA intron (FBgn0264078, intron 2 of 6) protein_coding-intron (FBgn0264078, intron 2 of 7) -2716 FBgn0030590 FBgn0030590 FBtr0073983 CG9518 protein_coding CG8478-S2-modencode_R2_peak_2794 chrX 4218038 4218230 + 17 NA intron (FBgn0262738, intron 1 of 14) protein_coding-intron (FBgn0262738, intron 1 of 14) 1475 FBgn0262738 FBgn0262738 FBtr0100670 norpA protein_coding CG8478-S2-modencode_R2_peak_3190 chrX 15654147 15654319 + 17 NA intron (FBgn0030685, intron 1 of 13) protein_coding-intron (FBgn0030685, intron 1 of 12) -1060 FBgn0030686 FBgn0030686 FBtr0074090 mRpL3 protein_coding CG8478-S2-modencode_R2_peak_2973 chrX 9561432 9562068 + 17 NA exon (FBgn0261617, exon 14 of 14) protein_coding-exon (FBgn0261617, exon 14 of 14) -4959 FBgn0030148 FBgn0030148 FBtr0071403 CG3106 protein_coding CG8478-S2-modencode_R2_peak_1269 chr3L 2590743 2590828 + 17 NA exon (FBgn0016794, exon 2 of 8) protein_coding-exon (FBgn0016794, exon 2 of 8) 1371 FBgn0016794 FBgn0016794 FBtr0072927 dos protein_coding CG8478-S2-modencode_R2_peak_3061 chrX 11575817 11576285 + 17 NA exon (FBgn0014133, exon 3 of 6) protein_coding-exon (FBgn0014133, exon 3 of 6) 3023 FBgn0014133 FBgn0014133 FBtr0073526 bif protein_coding CG8478-S2-modencode_R2_peak_1060 chr2R 15613525 15613781 + 17 NA promoter-TSS (FBgn0011850) tRNA-promoter-TSS (FBgn0011850) 65 FBgn0011850 FBgn0011850 FBtr0086448 tRNA:E4:56Fc tRNA CG8478-S2-modencode_R2_peak_725 chr2R 7328158 7328274 + 17 NA intron (FBgn0033635, intron 4 of 6) protein_coding-intron (FBgn0033635, intron 4 of 5) -1815 FBgn0260499 FBgn0260499 FBtr0114575 qvr protein_coding CG8478-S2-modencode_R2_peak_3235 chrX 17715671 17715907 + 17 NA exon (FBgn0030869, exon 9 of 9) protein_coding-exon (FBgn0030869, exon 9 of 9) -2071 FBgn0030868 FBgn0030868 FBtr0074474 CG12986 protein_coding CG8478-S2-modencode_R2_peak_1712 chr3L 19228462 19228694 + 17 NA promoter-TSS (FBgn0053647) protein_coding-promoter-TSS (FBgn0053647) -882 FBgn0053647 FBgn0053647 FBtr0091624 CG33647 protein_coding CG8478-S2-modencode_R2_peak_2107 chr3R 12032153 12032329 + 17 NA Intergenic Intergenic -1268 FBgn0010438 FBgn0010438 FBtr0083277 mtSSB protein_coding CG8478-S2-modencode_R2_peak_548 chr2R 3875546 3876380 + 17 NA promoter-TSS (FBgn0033247) protein_coding-promoter-TSS (FBgn0033247) -209 FBgn0033247 FBgn0033247 FBtr0088862 Nup44A protein_coding CG8478-S2-modencode_R2_peak_1474 chr3L 10359192 10359363 + 17 NA TTS (FBgn0262439) pre_miRNA-TTS (FBgn0262439) 896 FBgn0262439 FBgn0262439 FBtr0304433 mir-276a pre_miRNA CG8478-S2-modencode_R2_peak_1607 chr3L 16597458 16597570 + 17 NA exon (FBgn0042177, exon 3 of 8) protein_coding-exon (FBgn0042177, exon 3 of 8) 1361 FBgn0042177 FBgn0042177 FBtr0331559 CG32164 protein_coding CG8478-S2-modencode_R2_peak_2480 chr3R 25976401 25976527 + 17 NA Intergenic Intergenic -1136 FBgn0039747 FBgn0039747 FBtr0085581 AdoR protein_coding CG8478-S2-modencode_R2_peak_830 chr2R 10368907 10369954 + 17 NA intron (FBgn0001332, intron 1 of 3) protein_coding-intron (FBgn0001332, intron 1 of 3) 714 FBgn0001332 FBgn0001332 FBtr0087492 L protein_coding CG8478-S2-modencode_R2_peak_31 chr2L 521160 521417 + 17 NA intron (FBgn0003963, intron 2 of 8) protein_coding-intron (FBgn0003963, intron 1 of 7) 21292 FBgn0010602 FBgn0010602 FBtr0310029 lwr protein_coding CG8478-S2-modencode_R2_peak_205 chr2L 8488922 8489131 + 17 NA promoter-TSS (FBgn0032047) protein_coding-promoter-TSS (FBgn0032047) 45 FBgn0032047 FBgn0032047 FBtr0079681 CG13088 protein_coding CG8478-S2-modencode_R2_peak_3159 chrX 14841178 14841757 + 17 NA intron (FBgn0027601, intron 3 of 6) protein_coding-intron (FBgn0027601, intron 1 of 4) 4360 FBgn0027601 FBgn0027601 FBtr0073972 pdgy protein_coding CG8478-S2-modencode_R2_peak_1282 chr3L 3194580 3194788 + 17 NA exon (FBgn0001233, exon 2 of 2) protein_coding-exon (FBgn0001233, exon 2 of 2) 1715 FBgn0001233 FBgn0001233 FBtr0073040 Hsp83 protein_coding CG8478-S2-modencode_R2_peak_1029 chr2R 15177673 15178051 + 17 NA TTS (FBgn0034429) protein_coding-TTS (FBgn0034429) 255 FBgn0013954 FBgn0013954 FBtr0086515 FK506-bp2 protein_coding CG8478-S2-modencode_R2_peak_3086 chrX 12553614 12553878 + 17 NA exon (FBgn0053963, exon 1 of 1) ncRNA-exon (FBgn0053963, exon 1 of 1) 251 FBgn0053963 FBgn0053963 FBtr0100004 CR33963 ncRNA CG8478-S2-modencode_R2_peak_1304 chr3L 3417214 3417378 + 17 NA exon (FBgn0014388, exon 1 of 2) protein_coding-exon (FBgn0014388, exon 1 of 2) 631 FBgn0014388 FBgn0014388 FBtr0073146 sty protein_coding CG8478-S2-modencode_R2_peak_511 chr2R 3138444 3138704 + 17 NA TTS (FBgn0033153) protein_coding-TTS (FBgn0033153) 1906 FBgn0033153 FBgn0033153 FBtr0089049 Gadd45 protein_coding CG8478-S2-modencode_R2_peak_758 chr2R 8341648 8341861 + 17 NA intron (FBgn0010238, intron 1 of 1) protein_coding-intron (FBgn0010238, intron 1 of 1) 1058 FBgn0010238 FBgn0010238 FBtr0087933 Lac protein_coding CG8478-S2-modencode_R2_peak_62 chr2L 1987685 1987895 + 17 NA promoter-TSS (FBgn0031381) protein_coding-promoter-TSS (FBgn0031381) -2 FBgn0001125 FBgn0001125 FBtr0077868 Got2 protein_coding CG8478-S2-modencode_R2_peak_409 chr2L 20478609 20478727 + 17 NA Intergenic Intergenic -1119 FBgn0262879 FBgn0262879 FBtr0306286 CG43234 protein_coding CG8478-S2-modencode_R2_peak_2202 chr3R 15496952 15497717 + 17 NA TTS (FBgn0012003) tRNA-TTS (FBgn0012003) 151 FBgn0051216 FBgn0051216 FBtr0083786 Naam protein_coding CG8478-S2-modencode_R2_peak_2287 chr3R 19130568 19130707 + 17 NA intron (FBgn0003118, intron 6 of 8) protein_coding-intron (FBgn0003118, intron 4 of 6) -14726 FBgn0039071 FBgn0039071 FBtr0084382 CG4434 protein_coding CG8478-S2-modencode_R2_peak_2070 chr3R 10972225 10972951 + 17 NA exon (FBgn0038293, exon 1 of 5) protein_coding-exon (FBgn0038293, exon 1 of 5) 241 FBgn0038293 FBgn0038293 FBtr0083037 CG6904 protein_coding CG8478-S2-modencode_R2_peak_2717 chrX 2990282 2990534 + 17 NA intron (FBgn0028369, intron 5 of 10) protein_coding-intron (FBgn0028369, intron 7 of 12) -28893 FBgn0029649 FBgn0029649 FBtr0332494 CG4116 protein_coding CG8478-S2-modencode_R2_peak_591 chr2R 5493124 5493354 + 17 NA promoter-TSS (FBgn0050000) protein_coding-promoter-TSS (FBgn0050000) -256 FBgn0050000 FBgn0050000 FBtr0088463 CG30000 protein_coding CG8478-S2-modencode_R2_peak_2123 chr3R 12117634 12117801 + 17 NA intron (FBgn0250823, intron 3 of 11) protein_coding-intron (FBgn0250823, intron 3 of 11) -13768 FBgn0038412 FBgn0038412 FBtr0083266 Zip3 protein_coding CG8478-S2-modencode_R2_peak_469 chr2R 2020311 2020868 + 17 NA intron (FBgn0000546, intron 4 of 7) protein_coding-intron (FBgn0000546, intron 3 of 6) -1243 FBgn0000546 FBgn0000546 FBtr0086011 EcR protein_coding CG8478-S2-modencode_R2_peak_46 chr2L 1648853 1649207 + 17 NA Intergenic Intergenic -2228 FBgn0086758 FBgn0086758 FBtr0077878 chinmo protein_coding CG8478-S2-modencode_R2_peak_2117 chr3R 12074109 12074228 + 17 NA intron (FBgn0040071, intron 1 of 1) protein_coding-intron (FBgn0040071, intron 1 of 1) 5627 FBgn0040071 FBgn0040071 FBtr0083258 tara protein_coding CG8478-S2-modencode_R2_peak_2921 chrX 8792048 8792401 + 17 NA promoter-TSS (FBgn0011661) protein_coding-promoter-TSS (FBgn0011661) 141 FBgn0011661 FBgn0011661 FBtr0071272 Moe protein_coding CG8478-S2-modencode_R2_peak_2525 chr3R 27040903 27041172 + 17 NA TTS (FBgn0039828) protein_coding-TTS (FBgn0039828) 591 FBgn0039829 FBgn0039829 FBtr0085776 CG15561 protein_coding CG8478-S2-modencode_R2_peak_2572 chr4 1044668 1044870 + 17 NA intron (FBgn0025741, intron 1 of 9) protein_coding-intron (FBgn0025741, intron 1 of 9) 2951 FBgn0025741 FBgn0025741 FBtr0100296 plexA protein_coding CG8478-S2-modencode_R2_peak_1683 chr3L 18393284 18393658 + 17 NA Intergenic Intergenic -1936 FBgn0011706 FBgn0011706 FBtr0075120 rpr protein_coding CG8478-S2-modencode_R2_peak_900 chr2R 12687719 12687789 + 17 NA Intergenic Intergenic -3842 FBgn0034159 FBgn0034159 FBtr0300552 CG15615 protein_coding CG8478-S2-modencode_R2_peak_2180 chr3R 14275618 14276348 + 17 NA promoter-TSS (FBgn0004652) protein_coding-promoter-TSS (FBgn0004652) -38630 FBgn0038621 FBgn0038621 FBtr0083654 CG10864 protein_coding CG8478-S2-modencode_R2_peak_1218 chr3L 632430 632676 + 17 NA exon (FBgn0263039, exon 1 of 1) ncRNA-exon (FBgn0263039, exon 1 of 1) 4083 FBgn0263039 FBgn0263039 FBtr0333724 CR43334 ncRNA CG8478-S2-modencode_R2_peak_39 chr2L 1077132 1077243 + 17 NA promoter-TSS (FBgn0015905) protein_coding-promoter-TSS (FBgn0015905) 624 FBgn0003310 FBgn0003310 FBtr0077994 S protein_coding CG8478-S2-modencode_R2_peak_1359 chr3L 5177766 5178204 + 17 NA promoter-TSS (FBgn0052423) protein_coding-promoter-TSS (FBgn0052423) -88 FBgn0052423 FBgn0052423 FBtr0301599 shep protein_coding CG8478-S2-modencode_R2_peak_1873 chr3R 4181409 4182133 + 17 NA promoter-TSS (FBgn0020249) protein_coding-promoter-TSS (FBgn0020249) -918 FBgn0020249 FBgn0020249 FBtr0081846 stck protein_coding CG8478-S2-modencode_R2_peak_421 chr2L 21052883 21052953 + 17 NA promoter-TSS (FBgn0010395) protein_coding-promoter-TSS (FBgn0010395) -115 FBgn0010395 FBgn0010395 FBtr0081461 betaInt-nu protein_coding CG8478-S2-modencode_R2_peak_945 chr2R 13949585 13949723 + 17 NA promoter-TSS (FBgn0085415) protein_coding-promoter-TSS (FBgn0085415) -555 FBgn0085415 FBgn0085415 FBtr0112627 CG34386 protein_coding CG8478-S2-modencode_R2_peak_1162 chr2R 19761288 19761481 + 17 NA intron (FBgn0011236, intron 1 of 2) protein_coding-intron (FBgn0011236, intron 1 of 2) 3588 FBgn0011236 FBgn0011236 FBtr0072129 ken protein_coding CG8478-S2-modencode_R2_peak_2574 chr4 1269358 1269881 + 17 NA intron (FBgn0053653, intron 21 of 22) protein_coding-intron (FBgn0053653, intron 22 of 23) 35056 FBgn0053653 FBgn0053653 FBtr0307334 Caps protein_coding CG8478-S2-modencode_R2_peak_2984 chrX 9746535 9746822 + 17 NA Intergenic Intergenic -12573 FBgn0019929 FBgn0019929 FBtr0071387 Ser7 protein_coding CG8478-S2-modencode_R2_peak_827 chr2R 10247721 10247878 + 17 NA promoter-TSS (FBgn0033926) protein_coding-promoter-TSS (FBgn0033926) 0 FBgn0033926 FBgn0033926 FBtr0087560 Arc1 protein_coding CG8478-S2-modencode_R2_peak_2587 chrM 5202 5357 + 17 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1323 chr3L 3515825 3515935 + 17 NA exon (FBgn0005640, exon 1 of 11) protein_coding-exon (FBgn0005640, exon 1 of 11) 129 FBgn0005640 FBgn0005640 FBtr0110924 Eip63E protein_coding CG8478-S2-modencode_R2_peak_844 chr2R 11015405 11015518 + 17 NA promoter-TSS (FBgn0015371) protein_coding-promoter-TSS (FBgn0015371) 12699 FBgn0015371 FBgn0015371 FBtr0305216 chn protein_coding CG8478-S2-modencode_R2_peak_245 chr2L 9781986 9782548 + 17 NA promoter-TSS (FBgn0032147) protein_coding-promoter-TSS (FBgn0032147) -3979 FBgn0032147 FBgn0032147 FBtr0307204 IP3K1 protein_coding CG8478-S2-modencode_R2_peak_70 chr2L 2175031 2175655 + 17 NA intron (FBgn0000097, intron 1 of 4) protein_coding-intron (FBgn0000097, intron 1 of 3) 3406 FBgn0000097 FBgn0000097 FBtr0330660 aop protein_coding CG8478-S2-modencode_R2_peak_3194 chrX 15780948 15781222 + 17 NA TTS (FBgn0030703) protein_coding-TTS (FBgn0030703) 234 FBgn0260938 FBgn0260938 FBtr0310066 tay protein_coding CG8478-S2-modencode_R2_peak_2313 chr3R 19616664 19617108 + 17 NA intron (FBgn0015513, intron 2 of 14) protein_coding-intron (FBgn0015513, intron 2 of 13) 9398 FBgn0015513 FBgn0015513 FBtr0304729 mbc protein_coding CG8478-S2-modencode_R2_peak_2306 chr3R 19172853 19173267 + 17 NA promoter-TSS (FBgn0264326) protein_coding-promoter-TSS (FBgn0264326) -790 FBgn0264326 FBgn0264326 FBtr0084408 DNApol-epsilon protein_coding CG8478-S2-modencode_R2_peak_2536 chr3R 27538907 27539260 + 17 NA promoter-TSS (FBgn0003870) protein_coding-promoter-TSS (FBgn0003870) 4086 FBgn0054046 FBgn0054046 FBtr0308935 CR34046 ncRNA CG8478-S2-modencode_R2_peak_1003 chr2R 14662496 14662580 + 17 NA promoter-TSS (FBgn0264679) ncRNA-promoter-TSS (FBgn0264679) -378 FBgn0264679 FBgn0264679 FBtr0333776 CR43964 ncRNA CG8478-S2-modencode_R2_peak_1467 chr3L 9839440 9839699 + 17 NA intron (FBgn0004390, intron 1 of 4) protein_coding-intron (FBgn0004390, intron 1 of 4) -7778 FBgn0015618 FBgn0015618 FBtr0076369 Cdk8 protein_coding CG8478-S2-modencode_R2_peak_1675 chr3L 18039785 18040282 + 17 NA intron (FBgn0000568, intron 3 of 7) protein_coding-intron (FBgn0000568, intron 1 of 5) 4200 FBgn0259739 FBgn0259739 FBtr0300044 CG42393 protein_coding CG8478-S2-modencode_R2_peak_2146 chr3R 12828494 12828792 + 17 NA promoter-TSS (FBgn0038465) protein_coding-promoter-TSS (FBgn0038465) 44 FBgn0038465 FBgn0038465 FBtr0083371 Irc protein_coding CG8478-S2-modencode_R2_peak_2931 chrX 9178191 9178574 + 17 NA promoter-TSS (FBgn0002576) protein_coding-promoter-TSS (FBgn0002576) -300 FBgn0002576 FBgn0002576 FBtr0112814 lz protein_coding CG8478-S2-modencode_R2_peak_1823 chr3R 2234955 2235200 + 17 NA intron (FBgn0264495, intron 2 of 9) protein_coding-intron (FBgn0264495, intron 2 of 8) 2498 FBgn0264495 FBgn0264495 FBtr0303788 gpp protein_coding CG8478-S2-modencode_R2_peak_1298 chr3L 3399670 3400125 + 17 NA Intergenic Intergenic 12290 FBgn0262260 FBgn0262260 FBtr0304360 mir-2282 pre_miRNA CG8478-S2-modencode_R2_peak_3151 chrX 14666120 14666283 + 17 NA Intergenic Intergenic -3191 FBgn0030577 FBgn0030577 FBtr0073935 CG5334 protein_coding CG8478-S2-modencode_R2_peak_1704 chr3L 18890598 18890965 + 17 NA intron (FBgn0036824, intron 2 of 3) protein_coding-intron (FBgn0036824, intron 2 of 3) 612 FBgn0036824 FBgn0036824 FBtr0075076 CG3902 protein_coding CG8478-S2-modencode_R2_peak_2128 chr3R 12239551 12239777 + 17 NA Intergenic Intergenic -10252 FBgn0003513 FBgn0003513 FBtr0083318 ss protein_coding CG8478-S2-modencode_R2_peak_1245 chr3L 1177137 1177239 + 17 NA promoter-TSS (FBgn0025525) protein_coding-promoter-TSS (FBgn0025525) 88 FBgn0025525 FBgn0025525 FBtr0333271 bab2 protein_coding CG8478-S2-modencode_R2_peak_333 chr2L 15913353 15913650 + 17 NA intron (FBgn0028645, intron 2 of 6) protein_coding-intron (FBgn0028645, intron 2 of 6) -3387 FBgn0032577 FBgn0032577 FBtr0080792 CG13244 protein_coding CG8478-S2-modencode_R2_peak_1408 chr3L 8020886 8021830 + 17 NA TTS (FBgn0052370) tRNA-TTS (FBgn0052370) 360 FBgn0052370 FBgn0052370 FBtr0076762 tRNA:CR32370 tRNA CG8478-S2-modencode_R2_peak_1899 chr3R 4973494 4973700 + 17 NA intron (FBgn0003165, intron 1 of 6) protein_coding-intron (FBgn0003165, intron 8 of 12) 10075 FBgn0003165 FBgn0003165 FBtr0305197 pum protein_coding CG8478-S2-modencode_R2_peak_3181 chrX 15627845 15627969 + 17 NA promoter-TSS (FBgn0026666) protein_coding-promoter-TSS (FBgn0026666) 122 FBgn0030676 FBgn0030676 FBtr0273278 CG12379 protein_coding CG8478-S2-modencode_R2_peak_1651 chr3L 17661820 17662128 + 17 NA promoter-TSS (FBgn0065088) ncRNA-promoter-TSS (FBgn0065088) -144 FBgn0065088 FBgn0065088 FBtr0091663 snmRNA:641 ncRNA CG8478-S2-modencode_R2_peak_723 chr2R 7253777 7254480 + 17 NA promoter-TSS (FBgn0033627) protein_coding-promoter-TSS (FBgn0033627) -1656 FBgn0033627 FBgn0033627 FBtr0088129 CG13204 protein_coding CG8478-S2-modencode_R2_peak_2338 chr3R 20102031 20102229 + 17 NA exon (FBgn0019952, exon 1 of 1) protein_coding-exon (FBgn0019952, exon 1 of 1) 148 FBgn0019952 FBgn0019952 FBtr0084599 Orct protein_coding CG8478-S2-modencode_R2_peak_913 chr2R 12944199 12944326 + 17 NA promoter-TSS (FBgn0086350) protein_coding-promoter-TSS (FBgn0086350) 67 FBgn0086350 FBgn0086350 FBtr0087014 tef protein_coding CG8478-S2-modencode_R2_peak_2164 chr3R 13539109 13539381 + 17 NA intron (FBgn0261885, intron 2 of 15) protein_coding-intron (FBgn0261885, intron 2 of 15) 4814 FBgn0261885 FBgn0261885 FBtr0301487 osa protein_coding CG8478-S2-modencode_R2_peak_334 chr2L 16256992 16257653 + 17 NA promoter-TSS (FBgn0028515) protein_coding-promoter-TSS (FBgn0028515) -683 FBgn0028515 FBgn0028515 FBtr0080824 EndoGI protein_coding CG8478-S2-modencode_R2_peak_1910 chr3R 5154680 5154882 + 17 NA promoter-TSS (FBgn0037676) protein_coding-promoter-TSS (FBgn0037676) -554 FBgn0037676 FBgn0037676 FBtr0301210 CG8861 protein_coding CG8478-S2-modencode_R2_peak_556 chr2R 3948922 3949157 + 17 NA intron (FBgn0033252, intron 1 of 4) protein_coding-intron (FBgn0033252, intron 1 of 4) -2983 FBgn0033252 FBgn0033252 FBtr0088828 CG12769 protein_coding CG8478-S2-modencode_R2_peak_2545 chr3RHet 787864 788014 + 17 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1310 chr3L 3433241 3433320 + 17 NA intron (FBgn0026259, intron 7 of 8) protein_coding-intron (FBgn0026259, intron 7 of 8) -15353 FBgn0014388 FBgn0014388 FBtr0073146 sty protein_coding CG8478-S2-modencode_R2_peak_1265 chr3L 2573530 2573716 + 17 NA intron (FBgn0010909, intron 3 of 17) protein_coding-intron (FBgn0010909, intron 3 of 18) 12917 FBgn0010909 FBgn0010909 FBtr0333362 msn protein_coding CG8478-S2-modencode_R2_peak_2485 chr3R 26108361 26108646 + 17 NA intron (FBgn0010113, intron 1 of 5) protein_coding-intron (FBgn0010113, intron 1 of 5) 4847 FBgn0010113 FBgn0010113 FBtr0085620 hdc protein_coding CG8478-S2-modencode_R2_peak_3312 chrX 21465340 21465590 + 17 NA Intergenic Intergenic 10251 FBgn0027588 FBgn0027588 FBtr0070062 CG14476 protein_coding CG8478-S2-modencode_R2_peak_3226 chrX 17179781 17179890 + 17 NA TTS (FBgn0024238) protein_coding-TTS (FBgn0024238) -1319 FBgn0030837 FBgn0030837 FBtr0074444 CG8661 protein_coding CG8478-S2-modencode_R2_peak_2672 chrX 1906761 1907057 + 16 NA promoter-TSS (FBgn0261954) protein_coding-promoter-TSS (FBgn0261954) 233 FBgn0261954 FBgn0261954 FBtr0303047 east protein_coding CG8478-S2-modencode_R2_peak_1220 chr3L 637149 637488 + 16 NA TTS (FBgn0263342) ncRNA-TTS (FBgn0263342) 723 FBgn0263342 FBgn0263342 FBtr0308776 CR43423 ncRNA CG8478-S2-modencode_R2_peak_3162 chrX 14915322 14915652 + 16 NA intron (FBgn0030600, intron 13 of 22) protein_coding-intron (FBgn0030600, intron 13 of 22) -2980 FBgn0052594 FBgn0052594 FBtr0310270 be protein_coding CG8478-S2-modencode_R2_peak_98 chr2L 3836510 3836819 + 16 NA promoter-TSS (FBgn0004567) protein_coding-promoter-TSS (FBgn0004567) -178 FBgn0004567 FBgn0004567 FBtr0077500 slp2 protein_coding CG8478-S2-modencode_R2_peak_1179 chr2R 20744849 20744980 + 16 NA Intergenic Intergenic 8415 FBgn0035070 FBgn0035070 FBtr0072380 CG3650 protein_coding CG8478-S2-modencode_R2_peak_1958 chr3R 5916942 5917103 + 16 NA TTS (FBgn0262378) pre_miRNA-TTS (FBgn0262378) 119 FBgn0262378 FBgn0262378 FBtr0304218 mir-317 pre_miRNA CG8478-S2-modencode_R2_peak_893 chr2R 12467816 12468305 + 16 NA exon (FBgn0016131, exon 1 of 7) protein_coding-exon (FBgn0016131, exon 1 of 7) 431 FBgn0016131 FBgn0016131 FBtr0087104 Cdk4 protein_coding CG8478-S2-modencode_R2_peak_1400 chr3L 7849999 7850074 + 16 NA intron (FBgn0016694, intron 1 of 5) protein_coding-intron (FBgn0016694, intron 1 of 4) 10433 FBgn0016694 FBgn0016694 FBtr0332080 Pdp1 protein_coding CG8478-S2-modencode_R2_peak_734 chr2R 7488925 7489415 + 16 NA intron (FBgn0033636, intron 1 of 15) protein_coding-intron (FBgn0033636, intron 1 of 16) 3271 FBgn0033636 FBgn0033636 FBtr0088094 tou protein_coding CG8478-S2-modencode_R2_peak_1183 chr2R 20850684 20850854 + 16 NA promoter-TSS (FBgn0035087) protein_coding-promoter-TSS (FBgn0035087) 1837 FBgn0035087 FBgn0035087 FBtr0308686 CG2765 protein_coding CG8478-S2-modencode_R2_peak_2719 chrX 3056837 3057293 + 16 NA intron (FBgn0004647, intron 5 of 8) protein_coding-intron (FBgn0004647, intron 5 of 8) 10108 FBgn0028746 FBgn0028746 FBtr0070543 CG18508 protein_coding CG8478-S2-modencode_R2_peak_68 chr2L 2174298 2174395 + 16 NA intron (FBgn0000097, intron 1 of 4) protein_coding-intron (FBgn0000097, intron 1 of 3) 4403 FBgn0000097 FBgn0000097 FBtr0330660 aop protein_coding CG8478-S2-modencode_R2_peak_1397 chr3L 7847828 7847949 + 16 NA exon (FBgn0016694, exon 1 of 5) protein_coding-exon (FBgn0016694, exon 1 of 5) 12581 FBgn0016694 FBgn0016694 FBtr0332080 Pdp1 protein_coding CG8478-S2-modencode_R2_peak_299 chr2L 13060331 13060530 + 16 NA promoter-TSS (FBgn0262160) protein_coding-promoter-TSS (FBgn0262160) -315 FBgn0262160 FBgn0262160 FBtr0089956 CG9932 protein_coding CG8478-S2-modencode_R2_peak_603 chr2R 5837226 5837357 + 16 NA intron (FBgn0011656, intron 1 of 9) protein_coding-intron (FBgn0011656, intron 1 of 9) 9059 FBgn0011656 FBgn0011656 FBtr0088446 Mef2 protein_coding CG8478-S2-modencode_R2_peak_1734 chr3L 20501333 20501611 + 16 NA TTS (FBgn0037005) protein_coding-TTS (FBgn0037005) 2340 FBgn0037005 FBgn0037005 FBtr0078208 CG5078 protein_coding CG8478-S2-modencode_R2_peak_1874 chr3R 4183429 4183589 + 16 NA promoter-TSS (FBgn0020249) protein_coding-promoter-TSS (FBgn0020249) 820 FBgn0020249 FBgn0020249 FBtr0081846 stck protein_coding CG8478-S2-modencode_R2_peak_2630 chrUextra 27346908 27347044 + 16 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1572 chr3L 14970970 14971099 + 16 NA promoter-TSS (FBgn0263380) ncRNA-promoter-TSS (FBgn0263380) -303 FBgn0263380 FBgn0263380 FBtr0309065 CR43432 ncRNA CG8478-S2-modencode_R2_peak_1761 chr3L 22360482 22360650 + 16 NA intron (FBgn0004449, intron 1 of 11) protein_coding-intron (FBgn0004449, intron 1 of 8) 37688 FBgn0052450 FBgn0052450 FBtr0078501 CG32450 protein_coding CG8478-S2-modencode_R2_peak_1852 chr3R 3300583 3300801 + 16 NA promoter-TSS (FBgn0065099) snRNA-promoter-TSS (FBgn0065099) 26 FBgn0065099 FBgn0065099 FBtr0091929 snRNA:7SK snRNA CG8478-S2-modencode_R2_peak_555 chr2R 3939420 3939530 + 16 NA Intergenic Intergenic 6581 FBgn0033252 FBgn0033252 FBtr0088828 CG12769 protein_coding CG8478-S2-modencode_R2_peak_2955 chrX 9447507 9447802 + 16 NA promoter-TSS (FBgn0028327) protein_coding-promoter-TSS (FBgn0028327) 49 FBgn0028327 FBgn0028327 FBtr0071372 l(1)G0320 protein_coding CG8478-S2-modencode_R2_peak_1134 chr2R 18438225 18438425 + 16 NA exon (FBgn0034736, exon 2 of 2) protein_coding-exon (FBgn0034736, exon 2 of 2) 726 FBgn0034736 FBgn0034736 FBtr0071835 CG6018 protein_coding CG8478-S2-modencode_R2_peak_1818 chr3R 2164979 2165553 + 16 NA promoter-TSS (FBgn0037430) protein_coding-promoter-TSS (FBgn0037430) -553 FBgn0037430 FBgn0037430 FBtr0081708 Osi20 protein_coding CG8478-S2-modencode_R2_peak_349 chr2L 16613139 16613209 + 16 NA intron (FBgn0259735, intron 2 of 5) protein_coding-intron (FBgn0259735, intron 2 of 4) 5751 FBgn0032590 FBgn0032590 FBtr0080871 CG4631 protein_coding CG8478-S2-modencode_R2_peak_1591 chr3L 15619158 15619228 + 16 NA intron (FBgn0259236, intron 1 of 1) protein_coding-intron (FBgn0259236, intron 1 of 1) 6192 FBgn0036522 FBgn0036522 FBtr0075570 CG7372 protein_coding CG8478-S2-modencode_R2_peak_1239 chr3L 872354 872519 + 16 NA promoter-TSS (FBgn0052479) protein_coding-promoter-TSS (FBgn0052479) -475 FBgn0052479 FBgn0052479 FBtr0333266 CG32479 protein_coding CG8478-S2-modencode_R2_peak_3107 chrX 12624652 12624980 + 16 NA intron (FBgn0264678, intron 1 of 1) protein_coding-intron (FBgn0263865, intron 2 of 9) 11661 FBgn0263865 FBgn0263865 FBtr0333766 Smr protein_coding CG8478-S2-modencode_R2_peak_225 chr2L 8959330 8959575 + 16 NA promoter-TSS (FBgn0032079) protein_coding-promoter-TSS (FBgn0032079) 2902 FBgn0032080 FBgn0032080 FBtr0079786 CG9525 protein_coding CG8478-S2-modencode_R2_peak_1208 chr3L 557336 557514 + 16 NA intron (FBgn0035142, intron 2 of 10) protein_coding-intron (FBgn0035142, intron 2 of 10) -11901 FBgn0035142 FBgn0035142 FBtr0331786 hipk protein_coding CG8478-S2-modencode_R2_peak_2784 chrX 3683436 3683523 + 16 NA promoter-TSS (FBgn0029676) protein_coding-promoter-TSS (FBgn0029676) -596 FBgn0029676 FBgn0029676 FBtr0333764 HIP-R protein_coding CG8478-S2-modencode_R2_peak_159 chr2L 7423911 7424049 + 16 NA exon (FBgn0264439, exon 1 of 2) ncRNA-exon (FBgn0264439, exon 1 of 2) 160 FBgn0264439 FBgn0264439 FBtr0332525 CR43857 ncRNA CG8478-S2-modencode_R2_peak_682 chr2R 6970969 6971090 + 16 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -2062 FBgn0262817 FBgn0262817 FBtr0306049 CG43188 protein_coding CG8478-S2-modencode_R2_peak_1929 chr3R 5264415 5264682 + 16 NA intron (FBgn0261552, intron 1 of 4) protein_coding-intron (FBgn0261552, intron 1 of 4) 17720 FBgn0037696 FBgn0037696 FBtr0082044 CG9362 protein_coding CG8478-S2-modencode_R2_peak_399 chr2L 19735567 19735762 + 16 NA promoter-TSS (FBgn0032816) protein_coding-promoter-TSS (FBgn0032816) 56 FBgn0032815 FBgn0032815 FBtr0331244 CG10462 protein_coding CG8478-S2-modencode_R2_peak_2637 chrX 829323 829412 + 16 NA promoter-TSS (FBgn0040340) protein_coding-promoter-TSS (FBgn0040340) -92 FBgn0040340 FBgn0040340 FBtr0070169 TRAM protein_coding CG8478-S2-modencode_R2_peak_3116 chrX 12643896 12644149 + 16 NA TTS (FBgn0030418) protein_coding-TTS (FBgn0030418) 3672 FBgn0030418 FBgn0030418 FBtr0333722 CG4004 protein_coding CG8478-S2-modencode_R2_peak_1918 chr3R 5178062 5178207 + 16 NA intron (FBgn0263749, intron 2 of 5) protein_coding-intron (FBgn0263749, intron 1 of 4) -1856 FBgn0086053 FBgn0086053 FBtr0114329 snoRNA:Me18S-G1358a snoRNA CG8478-S2-modencode_R2_peak_1821 chr3R 2208718 2209340 + 16 NA TTS (FBgn0010282) protein_coding-TTS (FBgn0010282) 396 FBgn0037442 FBgn0037442 FBtr0081722 CG10277 protein_coding CG8478-S2-modencode_R2_peak_1105 chr2R 17549118 17549219 + 16 NA exon (FBgn0034647, exon 1 of 1) protein_coding-exon (FBgn0034647, exon 1 of 1) 581 FBgn0034647 FBgn0034647 FBtr0071682 pirk protein_coding CG8478-S2-modencode_R2_peak_1739 chr3L 20942629 20942995 + 16 NA promoter-TSS (FBgn0011591) protein_coding-promoter-TSS (FBgn0011591) -200 FBgn0011591 FBgn0011591 FBtr0078267 fng protein_coding CG8478-S2-modencode_R2_peak_558 chr2R 3955517 3956006 + 16 NA promoter-TSS (FBgn0040778) protein_coding-promoter-TSS (FBgn0040778) 301 FBgn0020279 FBgn0020279 FBtr0100575 lig protein_coding CG8478-S2-modencode_R2_peak_3236 chrX 17721002 17721248 + 16 NA intron (FBgn0030869, intron 1 of 8) protein_coding-intron (FBgn0030869, intron 1 of 8) 428 FBgn0030869 FBgn0030869 FBtr0074473 Socs16D protein_coding CG8478-S2-modencode_R2_peak_2002 chr3R 7947052 7947184 + 16 NA TTS (FBgn0037992) protein_coding-TTS (FBgn0037992) 6801 FBgn0037992 FBgn0037992 FBtr0308294 CG4702 protein_coding CG8478-S2-modencode_R2_peak_3097 chrX 12576723 12576949 + 16 NA TTS (FBgn0011837) protein_coding-TTS (FBgn0011837) -23051 FBgn0030417 FBgn0030417 FBtr0073685 CG15725 protein_coding CG8478-S2-modencode_R2_peak_1605 chr3L 16587920 16588051 + 16 NA promoter-TSS (FBgn0042178) protein_coding-promoter-TSS (FBgn0042178) 129 FBgn0027500 FBgn0027500 FBtr0075363 spd-2 protein_coding CG8478-S2-modencode_R2_peak_3313 chrX 21863067 21863522 + 16 NA intron (FBgn0031187, intron 3 of 10) protein_coding-intron (FBgn0031187, intron 3 of 10) 5653 FBgn0031187 FBgn0031187 FBtr0077350 CG14619 protein_coding CG8478-S2-modencode_R2_peak_1295 chr3L 3388921 3388993 + 16 NA Intergenic Intergenic 10689 FBgn0035445 FBgn0035445 FBtr0073077 CG12014 protein_coding CG8478-S2-modencode_R2_peak_2830 chrX 5774131 5774203 + 16 NA promoter-TSS (FBgn0029819) protein_coding-promoter-TSS (FBgn0029819) 276 FBgn0029820 FBgn0029820 FBtr0070821 CG16721 protein_coding CG8478-S2-modencode_R2_peak_1573 chr3L 15003372 15003623 + 16 NA intron (FBgn0036463, intron 2 of 7) protein_coding-intron (FBgn0036463, intron 2 of 7) 3665 FBgn0036463 FBgn0036463 FBtr0333876 Reck protein_coding CG8478-S2-modencode_R2_peak_1260 chr3L 2488410 2488855 + 16 NA promoter-TSS (FBgn0035346) protein_coding-promoter-TSS (FBgn0035346) -1588 FBgn0035346 FBgn0035346 FBtr0072923 CG1146 protein_coding CG8478-S2-modencode_R2_peak_1077 chr2R 16887641 16887871 + 16 NA promoter-TSS (FBgn0034570) protein_coding-promoter-TSS (FBgn0034570) 4031 FBgn0034570 FBgn0034570 FBtr0303195 CG10543 protein_coding CG8478-S2-modencode_R2_peak_2654 chrX 1360914 1361045 + 16 NA promoter-TSS (FBgn0029580) protein_coding-promoter-TSS (FBgn0029580) -514 FBgn0027791 FBgn0027791 FBtr0070296 O-fut2 protein_coding CG8478-S2-modencode_R2_peak_1432 chr3L 8685502 8685812 + 16 NA Intergenic Intergenic 16798 FBgn0001168 FBgn0001168 FBtr0076569 h protein_coding CG8478-S2-modencode_R2_peak_1038 chr2R 15301287 15301478 + 16 NA promoter-TSS (FBgn0028981) tRNA-promoter-TSS (FBgn0028981) 613 FBgn0263464 FBgn0263464 FBtr0309763 snoRNA:hts-a snoRNA CG8478-S2-modencode_R2_peak_1531 chr3L 11781998 11782371 + 16 NA intron (FBgn0015278, intron 1 of 3) protein_coding-intron (FBgn0015278, intron 2 of 4) 929 FBgn0015278 FBgn0015278 FBtr0332055 Pi3K68D protein_coding CG8478-S2-modencode_R2_peak_1654 chr3L 17915280 17915443 + 16 NA Intergenic Intergenic -9696 FBgn0036772 FBgn0036772 FBtr0075152 CG5290 protein_coding CG8478-S2-modencode_R2_peak_2712 chrX 2536589 2536731 + 16 NA promoter-TSS (FBgn0003371) protein_coding-promoter-TSS (FBgn0003371) -390 FBgn0003371 FBgn0003371 FBtr0112828 sgg protein_coding CG8478-S2-modencode_R2_peak_3245 chrX 18529455 18529709 + 16 NA promoter-TSS (FBgn0030941) protein_coding-promoter-TSS (FBgn0030941) -646 FBgn0030941 FBgn0030941 FBtr0074617 wgn protein_coding CG8478-S2-modencode_R2_peak_265 chr2L 11808673 11809100 + 16 NA promoter-TSS (FBgn0020309) protein_coding-promoter-TSS (FBgn0020309) 86 FBgn0020309 FBgn0020309 FBtr0305262 crol protein_coding CG8478-S2-modencode_R2_peak_749 chr2R 7527003 7527377 + 16 NA intron (FBgn0033638, intron 1 of 7) protein_coding-intron (FBgn0033638, intron 1 of 7) 1228 FBgn0033638 FBgn0033638 FBtr0088089 CG9005 protein_coding CG8478-S2-modencode_R2_peak_113 chr2L 5007758 5008994 + 16 NA exon (FBgn0053113, exon 1 of 5) protein_coding-exon (FBgn0053113, exon 1 of 5) 2458 FBgn0031668 FBgn0031668 FBtr0079037 CG31917 protein_coding CG8478-S2-modencode_R2_peak_445 chr2R 149039 149187 + 16 NA Intergenic Intergenic -18669 FBgn0262117 FBgn0262117 FBtr0111269 IntS3 protein_coding CG8478-S2-modencode_R2_peak_2727 chrX 3247305 3247481 + 16 NA Intergenic Intergenic -19799 FBgn0262656 FBgn0262656 FBtr0070525 dm protein_coding CG8478-S2-modencode_R2_peak_2750 chrX 3569423 3569557 + 16 NA intron (FBgn0023215, intron 1 of 8) protein_coding-intron (FBgn0023215, intron 1 of 8) -3955 FBgn0023216 FBgn0023216 FBtr0307279 Parg protein_coding CG8478-S2-modencode_R2_peak_2711 chrX 2528597 2528833 + 16 NA intron (FBgn0003371, intron 1 of 9) protein_coding-intron (FBgn0003371, intron 1 of 9) -8335 FBgn0003371 FBgn0003371 FBtr0112828 sgg protein_coding CG8478-S2-modencode_R2_peak_1796 chr3R 646887 647229 + 16 NA promoter-TSS (FBgn0037282) protein_coding-promoter-TSS (FBgn0037282) 92 FBgn0037282 FBgn0037282 FBtr0078875 CG14657 protein_coding CG8478-S2-modencode_R2_peak_2063 chr3R 10919222 10919346 + 16 NA intron (FBgn0038286, intron 1 of 4) protein_coding-intron (FBgn0038286, intron 1 of 4) 2049 FBgn0038286 FBgn0038286 FBtr0113236 CG6966 protein_coding CG8478-S2-modencode_R2_peak_2428 chr3R 24156622 24157035 + 16 NA exon (FBgn0261618, exon 1 of 6) protein_coding-exon (FBgn0261618, exon 1 of 6) 4435 FBgn0261618 FBgn0261618 FBtr0301181 larp protein_coding CG8478-S2-modencode_R2_peak_644 chr2R 6445093 6445325 + 16 NA promoter-TSS (FBgn0263102) protein_coding-promoter-TSS (FBgn0263102) -184 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding CG8478-S2-modencode_R2_peak_1714 chr3L 19626006 19626688 + 16 NA promoter-TSS (FBgn0036896) protein_coding-promoter-TSS (FBgn0036896) -151 FBgn0036896 FBgn0036896 FBtr0302513 wnd protein_coding CG8478-S2-modencode_R2_peak_2464 chr3R 25585323 25585465 + 16 NA Intergenic Intergenic 10453 FBgn0260990 FBgn0260990 FBtr0085477 yata protein_coding CG8478-S2-modencode_R2_peak_963 chr2R 14229791 14229996 + 16 NA intron (FBgn0010575, intron 1 of 10) protein_coding-intron (FBgn0010575, intron 1 of 11) 14908 FBgn0010575 FBgn0010575 FBtr0329996 sbb protein_coding CG8478-S2-modencode_R2_peak_1700 chr3L 18815867 18816053 + 16 NA TTS (FBgn0036815) protein_coding-TTS (FBgn0036815) 256 FBgn0000261 FBgn0000261 FBtr0075058 Cat protein_coding CG8478-S2-modencode_R2_peak_330 chr2L 15500232 15500669 + 16 NA intron (FBgn0002524, intron 1 of 3) protein_coding-intron (FBgn0002524, intron 1 of 3) 1340 FBgn0002524 FBgn0002524 FBtr0080738 lace protein_coding CG8478-S2-modencode_R2_peak_2187 chr3R 14409327 14409526 + 16 NA promoter-TSS (FBgn0023083) protein_coding-promoter-TSS (FBgn0023083) -2236 FBgn0023083 FBgn0023083 FBtr0290210 fray protein_coding CG8478-S2-modencode_R2_peak_742 chr2R 7503478 7503987 + 16 NA promoter-TSS (FBgn0033636) protein_coding-promoter-TSS (FBgn0033636) 32 FBgn0264508 FBgn0264508 FBtr0333069 CR43907 ncRNA CG8478-S2-modencode_R2_peak_1004 chr2R 14664796 14665379 + 16 NA promoter-TSS (FBgn0034390) protein_coding-promoter-TSS (FBgn0034390) -609 FBgn0034390 FBgn0034390 FBtr0303846 CG15093 protein_coding CG8478-S2-modencode_R2_peak_2066 chr3R 10940316 10940452 + 16 NA intron (FBgn0261859, intron 1 of 9) protein_coding-intron (FBgn0261859, intron 1 of 9) 16130 FBgn0262315 FBgn0262315 FBtr0304477 mir-2493 pre_miRNA CG8478-S2-modencode_R2_peak_985 chr2R 14423917 14424374 + 16 NA promoter-TSS (FBgn0003067) protein_coding-promoter-TSS (FBgn0003067) -127 FBgn0003067 FBgn0003067 FBtr0086701 Pepck protein_coding CG8478-S2-modencode_R2_peak_520 chr2R 3380593 3380787 + 16 NA promoter-TSS (FBgn0263240) protein_coding-promoter-TSS (FBgn0263240) 821 FBgn0263967 FBgn0263967 FBtr0329875 CR43723 ncRNA CG8478-S2-modencode_R2_peak_1743 chr3L 21035461 21035644 + 16 NA intron (FBgn0026179, intron 1 of 5) protein_coding-intron (FBgn0026179, intron 1 of 5) -5774 FBgn0026179 FBgn0026179 FBtr0111038 siz protein_coding CG8478-S2-modencode_R2_peak_947 chr2R 14013473 14013799 + 16 NA promoter-TSS (FBgn0028983) protein_coding-promoter-TSS (FBgn0028983) -174 FBgn0028983 FBgn0028983 FBtr0086733 Spn6 protein_coding CG8478-S2-modencode_R2_peak_2578 chr4 1274552 1274775 + 16 NA exon (FBgn0053653, exon 24 of 24) protein_coding-exon (FBgn0053653, exon 24 of 24) 40100 FBgn0053653 FBgn0053653 FBtr0307334 Caps protein_coding CG8478-S2-modencode_R2_peak_2917 chrX 8601912 8602341 + 16 NA Intergenic Intergenic -1559 FBgn0041629 FBgn0041629 FBtr0071249 Hexo2 protein_coding CG8478-S2-modencode_R2_peak_903 chr2R 12717227 12717398 + 16 NA promoter-TSS (FBgn0263659) ncRNA-promoter-TSS (FBgn0263659) -883 FBgn0263659 FBgn0263659 FBtr0310103 CR43650 ncRNA CG8478-S2-modencode_R2_peak_2829 chrX 5649175 5649394 + 16 NA promoter-TSS (FBgn0029801) protein_coding-promoter-TSS (FBgn0029801) -367 FBgn0029800 FBgn0029800 FBtr0070840 lin-52 protein_coding CG8478-S2-modencode_R2_peak_986 chr2R 14497085 14497411 + 16 NA intron (FBgn0050115, intron 1 of 8) protein_coding-intron (FBgn0050115, intron 1 of 7) 2012 FBgn0050115 FBgn0050115 FBtr0310055 GEFmeso protein_coding CG8478-S2-modencode_R2_peak_2928 chrX 9058702 9058853 + 16 NA intron (FBgn0026206, intron 1 of 7) protein_coding-intron (FBgn0026206, intron 1 of 7) 581 FBgn0026206 FBgn0026206 FBtr0333475 mei-P26 protein_coding CG8478-S2-modencode_R2_peak_2235 chr3R 16952617 16952687 + 16 NA promoter-TSS (FBgn0038858) protein_coding-promoter-TSS (FBgn0038858) 555 FBgn0023423 FBgn0023423 FBtr0333931 slmb protein_coding CG8478-S2-modencode_R2_peak_442 chr2R 141007 141136 + 16 NA Intergenic Intergenic -10627 FBgn0262117 FBgn0262117 FBtr0111269 IntS3 protein_coding CG8478-S2-modencode_R2_peak_2370 chr3R 21566170 21566365 + 16 NA promoter-TSS (FBgn0051092) protein_coding-promoter-TSS (FBgn0051092) -80 FBgn0051092 FBgn0051092 FBtr0113387 LpR2 protein_coding CG8478-S2-modencode_R2_peak_2160 chr3R 13525590 13526142 + 16 NA intron (FBgn0261885, intron 4 of 15) protein_coding-intron (FBgn0261885, intron 4 of 15) -13083 FBgn0051249 FBgn0051249 FBtr0083483 CG31249 protein_coding CG8478-S2-modencode_R2_peak_3075 chrX 12368651 12368721 + 16 NA intron (FBgn0259143, intron 1 of 4) protein_coding-intron (FBgn0259143, intron 2 of 5) 2985 FBgn0259143 FBgn0259143 FBtr0299559 CG42258 protein_coding CG8478-S2-modencode_R2_peak_184 chr2L 8163559 8163836 + 16 NA intron (FBgn0031993, intron 1 of 29) protein_coding-intron (FBgn0031993, intron 1 of 29) 399 FBgn0031993 FBgn0031993 FBtr0303400 Piezo protein_coding CG8478-S2-modencode_R2_peak_3154 chrX 14727731 14727830 + 16 NA exon (FBgn0030582, exon 2 of 2) protein_coding-exon (FBgn0030582, exon 2 of 2) 1109 FBgn0030582 FBgn0030582 FBtr0300433 CG14411 protein_coding CG8478-S2-modencode_R2_peak_2705 chrX 2229289 2229798 + 16 NA promoter-TSS (FBgn0044047) protein_coding-promoter-TSS (FBgn0044047) -3102 FBgn0044047 FBgn0044047 FBtr0333731 Ilp6 protein_coding CG8478-S2-modencode_R2_peak_1507 chr3L 11085930 11086007 + 16 NA TTS (FBgn0036125) protein_coding-TTS (FBgn0036125) 325 FBgn0020412 FBgn0020412 FBtr0076236 JIL-1 protein_coding CG8478-S2-modencode_R2_peak_2217 chr3R 16590134 16590238 + 16 NA intron (FBgn0038826, intron 1 of 10) protein_coding-intron (FBgn0038826, intron 1 of 11) -2099 FBgn0051195 FBgn0051195 FBtr0302188 CG31195 protein_coding CG8478-S2-modencode_R2_peak_3024 chrX 10416464 10416564 + 16 NA intron (FBgn0085443, intron 4 of 10) protein_coding-intron (FBgn0085443, intron 3 of 9) -35854 FBgn0052687 FBgn0052687 FBtr0071458 CG32687 protein_coding CG8478-S2-modencode_R2_peak_360 chr2L 17450400 17450974 + 16 NA promoter-TSS (FBgn0260632) protein_coding-promoter-TSS (FBgn0260632) -2177 FBgn0260632 FBgn0260632 FBtr0081007 dl protein_coding CG8478-S2-modencode_R2_peak_2641 chrX 936915 937323 + 16 NA exon (FBgn0003638, exon 2 of 7) protein_coding-exon (FBgn0003638, exon 2 of 7) -3363 FBgn0259144 FBgn0259144 FBtr0305650 CG42259 protein_coding CG8478-S2-modencode_R2_peak_2289 chr3R 19141035 19141392 + 16 NA intron (FBgn0003118, intron 3 of 8) protein_coding-intron (FBgn0003118, intron 3 of 8) -25302 FBgn0039071 FBgn0039071 FBtr0084382 CG4434 protein_coding CG8478-S2-modencode_R2_peak_793 chr2R 9389430 9390170 + 16 NA promoter-TSS (FBgn0033845) protein_coding-promoter-TSS (FBgn0033845) -280 FBgn0033845 FBgn0033845 FBtr0087668 mars protein_coding CG8478-S2-modencode_R2_peak_1941 chr3R 5694321 5694452 + 16 NA promoter-TSS (FBgn0037766) protein_coding-promoter-TSS (FBgn0037766) -544 FBgn0037766 FBgn0037766 FBtr0330082 Teh1 protein_coding CG8478-S2-modencode_R2_peak_3064 chrX 11580252 11580602 + 16 NA intron (FBgn0014133, intron 3 of 6) protein_coding-intron (FBgn0014133, intron 3 of 5) 7399 FBgn0014133 FBgn0014133 FBtr0073526 bif protein_coding CG8478-S2-modencode_R2_peak_3139 chrX 13315215 13315431 + 16 NA TTS (FBgn0030486) protein_coding-TTS (FBgn0030486) 8048 FBgn0030486 FBgn0030486 FBtr0301559 Set2 protein_coding CG8478-S2-modencode_R2_peak_2731 chrX 3265212 3265660 + 16 NA Intergenic Intergenic -1756 FBgn0262656 FBgn0262656 FBtr0070525 dm protein_coding CG8478-S2-modencode_R2_peak_25 chr2L 499316 499490 + 16 NA intron (FBgn0003963, intron 2 of 8) protein_coding-intron (FBgn0003963, intron 1 of 7) -19715 FBgn0043364 FBgn0043364 FBtr0310030 cbt protein_coding CG8478-S2-modencode_R2_peak_2656 chrX 1375598 1375879 + 16 NA TTS (FBgn0025381) protein_coding-TTS (FBgn0025381) 885 FBgn0044508 FBgn0044508 FBtr0070292 snoRNA:M snoRNA CG8478-S2-modencode_R2_peak_696 chr2R 6992249 6992382 + 16 NA intron (FBgn0040765, intron 1 of 4) protein_coding-intron (FBgn0040765, intron 1 of 4) 2006 FBgn0040765 FBgn0040765 FBtr0088210 luna protein_coding CG8478-S2-modencode_R2_peak_1161 chr2R 19759688 19759985 + 16 NA intron (FBgn0011236, intron 1 of 2) protein_coding-intron (FBgn0011236, intron 1 of 2) 2040 FBgn0011236 FBgn0011236 FBtr0072129 ken protein_coding CG8478-S2-modencode_R2_peak_2491 chr3R 26152384 26152849 + 16 NA intron (FBgn0010113, intron 2 of 5) protein_coding-intron (FBgn0010113, intron 2 of 5) -20257 FBgn0085329 FBgn0085329 FBtr0305269 CG34300 protein_coding CG8478-S2-modencode_R2_peak_1056 chr2R 15518201 15518276 + 16 NA promoter-TSS (FBgn0003435) protein_coding-promoter-TSS (FBgn0003435) -4546 FBgn0261807 FBgn0261807 FBtr0303283 CG42753 protein_coding CG8478-S2-modencode_R2_peak_3056 chrX 11321259 11321558 + 16 NA intron (FBgn0001145, intron 2 of 4) protein_coding-intron (FBgn0001145, intron 2 of 4) 3417 FBgn0001145 FBgn0001145 FBtr0073496 Gs2 protein_coding CG8478-S2-modencode_R2_peak_2440 chr3R 24864866 24865260 + 16 NA promoter-TSS (FBgn0039626) protein_coding-promoter-TSS (FBgn0039626) 167 FBgn0003093 FBgn0003093 FBtr0301516 Pkc98E protein_coding CG8478-S2-modencode_R2_peak_2290 chr3R 19148289 19148369 + 16 NA intron (FBgn0003118, intron 3 of 8) protein_coding-intron (FBgn0003118, intron 3 of 8) 23555 FBgn0003118 FBgn0003118 FBtr0089715 pnt protein_coding CG8478-S2-modencode_R2_peak_2094 chr3R 11829210 11829300 + 16 NA TTS (FBgn0262028) ncRNA-TTS (FBgn0262028) 4540 FBgn0262028 FBgn0262028 FBtr0303861 CR42839 ncRNA CG8478-S2-modencode_R2_peak_1914 chr3R 5172032 5172581 + 16 NA intron (FBgn0263749, intron 2 of 5) protein_coding-intron (FBgn0263749, intron 1 of 4) 4711 FBgn0263749 FBgn0263749 FBtr0310401 CG43674 protein_coding CG8478-S2-modencode_R2_peak_1160 chr2R 19758817 19758959 + 16 NA intron (FBgn0011236, intron 1 of 2) protein_coding-intron (FBgn0011236, intron 1 of 2) 1092 FBgn0011236 FBgn0011236 FBtr0072129 ken protein_coding CG8478-S2-modencode_R2_peak_2369 chr3R 21473695 21473796 + 16 NA intron (FBgn0039350, intron 1 of 3) protein_coding-intron (FBgn0039350, intron 3 of 5) 758 FBgn0039350 FBgn0039350 FBtr0113288 jigr1 protein_coding CG8478-S2-modencode_R2_peak_194 chr2L 8415926 8417155 + 16 NA intron (FBgn0027932, intron 1 of 4) protein_coding-intron (FBgn0027932, intron 1 of 5) 850 FBgn0027932 FBgn0027932 FBtr0079666 Akap200 protein_coding CG8478-S2-modencode_R2_peak_976 chr2R 14294472 14294796 + 16 NA promoter-TSS (FBgn0063492) protein_coding-promoter-TSS (FBgn0063492) 209 FBgn0063493 FBgn0063493 FBtr0086675 GstE7 protein_coding CG8478-S2-modencode_R2_peak_2481 chr3R 26097093 26097191 + 16 NA Intergenic Intergenic -6514 FBgn0010113 FBgn0010113 FBtr0085620 hdc protein_coding CG8478-S2-modencode_R2_peak_873 chr2R 12016726 12016817 + 16 NA intron (FBgn0086676, intron 1 of 7) protein_coding-intron (FBgn0086676, intron 1 of 7) 4283 FBgn0086676 FBgn0086676 FBtr0089593 spin protein_coding CG8478-S2-modencode_R2_peak_807 chr2R 9849444 9849662 + 16 NA intron (FBgn0013770, intron 1 of 3) protein_coding-intron (FBgn0013770, intron 1 of 3) -1840 FBgn0033886 FBgn0033886 FBtr0114495 CG13349 protein_coding CG8478-S2-modencode_R2_peak_1263 chr3L 2533589 2533742 + 16 NA intron (FBgn0010905, intron 3 of 16) protein_coding-intron (FBgn0010905, intron 3 of 15) -6692 FBgn0260480 FBgn0260480 FBtr0072962 CG32295 protein_coding CG8478-S2-modencode_R2_peak_206 chr2L 8542093 8542414 + 16 NA promoter-TSS (FBgn0051604) tRNA-promoter-TSS (FBgn0051604) 492 FBgn0051603 FBgn0051603 FBtr0079690 tRNA:CR31603 tRNA CG8478-S2-modencode_R2_peak_1098 chr2R 17393568 17393856 + 16 NA promoter-TSS (FBgn0043070) protein_coding-promoter-TSS (FBgn0043070) 4110 FBgn0043070 FBgn0043070 FBtr0089706 MESK2 protein_coding CG8478-S2-modencode_R2_peak_735 chr2R 7489878 7490108 + 16 NA intron (FBgn0033636, intron 1 of 15) protein_coding-intron (FBgn0033636, intron 1 of 16) 2448 FBgn0033636 FBgn0033636 FBtr0088094 tou protein_coding CG8478-S2-modencode_R2_peak_1933 chr3R 5369307 5369407 + 16 NA intron (FBgn0037705, intron 2 of 8) protein_coding-intron (FBgn0037705, intron 2 of 8) 7703 FBgn0037705 FBgn0037705 FBtr0082118 mura protein_coding CG8478-S2-modencode_R2_peak_1369 chr3L 5915135 5915359 + 16 NA promoter-TSS (FBgn0052407) protein_coding-promoter-TSS (FBgn0052407) -329 FBgn0052407 FBgn0052407 FBtr0330118 CG32407 protein_coding CG8478-S2-modencode_R2_peak_2007 chr3R 8196443 8196724 + 16 NA Intergenic Intergenic -1110 FBgn0010038 FBgn0010038 FBtr0082569 GstD2 protein_coding CG8478-S2-modencode_R2_peak_2454 chr3R 25116949 25117543 + 16 NA Intergenic Intergenic 5705 FBgn0039659 FBgn0039659 FBtr0085439 CG14506 protein_coding CG8478-S2-modencode_R2_peak_878 chr2R 12047457 12048027 + 16 NA intron (FBgn0034083, intron 1 of 8) protein_coding-intron (FBgn0034083, intron 1 of 8) -1443 FBgn0034082 FBgn0034082 FBtr0087250 CG10734 protein_coding CG8478-S2-modencode_R2_peak_2696 chrX 2195374 2195962 + 16 NA intron (FBgn0003079, intron 2 of 5) protein_coding-intron (FBgn0003079, intron 2 of 5) 5751 FBgn0003079 FBgn0003079 FBtr0111025 phl protein_coding CG8478-S2-modencode_R2_peak_1462 chr3L 9688170 9688356 + 16 NA intron (FBgn0036030, intron 1 of 7) protein_coding-intron (FBgn0036030, intron 1 of 6) 1537 FBgn0036030 FBgn0036030 FBtr0333856 CG6767 protein_coding CG8478-S2-modencode_R2_peak_2345 chr3R 20397737 20398799 + 16 NA promoter-TSS (FBgn0039209) protein_coding-promoter-TSS (FBgn0039209) 4907 FBgn0039209 FBgn0039209 FBtr0084675 CG13624 protein_coding CG8478-S2-modencode_R2_peak_781 chr2R 8930808 8930982 + 16 NA Intergenic Intergenic 3898 FBgn0033788 FBgn0033788 FBtr0087797 CG13323 protein_coding CG8478-S2-modencode_R2_peak_1570 chr3L 14667152 14667417 + 16 NA promoter-TSS (FBgn0011928) tRNA-promoter-TSS (FBgn0011928) -160 FBgn0011928 FBgn0011928 FBtr0075681 tRNA:M3:70Fb tRNA CG8478-S2-modencode_R2_peak_2880 chrX 7584935 7585099 + 16 NA intron (FBgn0029504, intron 1 of 5) protein_coding-intron (FBgn0029504, intron 1 of 5) 3934 FBgn0029504 FBgn0029504 FBtr0071079 CHES-1-like protein_coding CG8478-S2-modencode_R2_peak_1481 chr3L 10577267 10577398 + 16 NA intron (FBgn0052062, intron 9 of 13) protein_coding-intron (FBgn0052062, intron 8 of 14) -25150 FBgn0036085 FBgn0036085 FBtr0076291 CG6527 protein_coding CG8478-S2-modencode_R2_peak_1830 chr3R 2605915 2606018 + 16 NA TTS (FBgn0261638) ncRNA-TTS (FBgn0261638) -1292 FBgn0263383 FBgn0263383 FBtr0309070 CR43435 ncRNA CG8478-S2-modencode_R2_peak_2887 chrX 7601178 7601450 + 16 NA promoter-TSS (FBgn0262979) protein_coding-promoter-TSS (FBgn0262979) -494 FBgn0262979 FBgn0262979 FBtr0306815 CG43287 protein_coding CG8478-S2-modencode_R2_peak_724 chr2R 7254678 7254817 + 16 NA intron (FBgn0033627, intron 1 of 2) protein_coding-intron (FBgn0033627, intron 1 of 2) -1037 FBgn0033627 FBgn0033627 FBtr0088129 CG13204 protein_coding CG8478-S2-modencode_R2_peak_2042 chr3R 9809285 9809670 + 16 NA promoter-TSS (FBgn0264493) protein_coding-promoter-TSS (FBgn0264493) 12022 FBgn0263414 FBgn0263414 FBtr0309198 CR43460 ncRNA CG8478-S2-modencode_R2_peak_1125 chr2R 18131212 18131301 + 16 NA promoter-TSS (FBgn0020307) protein_coding-promoter-TSS (FBgn0020307) -15532 FBgn0034716 FBgn0034716 FBtr0301476 Oatp58Dc protein_coding CG8478-S2-modencode_R2_peak_2121 chr3R 12110306 12110428 + 16 NA intron (FBgn0250823, intron 2 of 11) protein_coding-intron (FBgn0250823, intron 2 of 11) 12191 FBgn0250823 FBgn0250823 FBtr0100332 gish protein_coding CG8478-S2-modencode_R2_peak_818 chr2R 9922980 9923588 + 16 NA intron (FBgn0002643, intron 1 of 3) protein_coding-intron (FBgn0002643, intron 3 of 6) 4100 FBgn0002643 FBgn0002643 FBtr0087598 mam protein_coding CG8478-S2-modencode_R2_peak_535 chr2R 3586932 3587025 + 16 NA promoter-TSS (FBgn0050496) protein_coding-promoter-TSS (FBgn0050496) -31 FBgn0050496 FBgn0050496 FBtr0088926 CG30496 protein_coding CG8478-S2-modencode_R2_peak_884 chr2R 12074780 12075320 + 16 NA promoter-TSS (FBgn0034087) protein_coding-promoter-TSS (FBgn0034087) -344 FBgn0034087 FBgn0034087 FBtr0333169 clu protein_coding CG8478-S2-modencode_R2_peak_702 chr2R 7007070 7007155 + 16 NA TTS (FBgn0050489) protein_coding-TTS (FBgn0050489) 2241 FBgn0050489 FBgn0050489 FBtr0089419 Cyp12d1-p protein_coding CG8478-S2-modencode_R2_peak_1019 chr2R 15041865 15041997 + 16 NA promoter-TSS (FBgn0000578) protein_coding-promoter-TSS (FBgn0000578) -770 FBgn0000578 FBgn0000578 FBtr0114623 ena protein_coding CG8478-S2-modencode_R2_peak_1943 chr3R 5756925 5757881 + 16 NA intron (FBgn0263097, intron 2 of 6) protein_coding-intron (FBgn0263097, intron 2 of 6) 54379 FBgn0037770 FBgn0037770 FBtr0082150 Art4 protein_coding CG8478-S2-modencode_R2_peak_1362 chr3L 5270422 5271272 + 16 NA exon (FBgn0052423, exon 1 of 11) protein_coding-exon (FBgn0052423, exon 1 of 11) 43264 FBgn0035598 FBgn0035598 FBtr0077171 CG4669 protein_coding CG8478-S2-modencode_R2_peak_377 chr2L 18732860 18733209 + 16 NA Intergenic Intergenic -1615 FBgn0032707 FBgn0032707 FBtr0301647 CG10348 protein_coding CG8478-S2-modencode_R2_peak_2686 chrX 2148262 2148545 + 16 NA promoter-TSS (FBgn0029608) protein_coding-promoter-TSS (FBgn0029608) -236 FBgn0029608 FBgn0029608 FBtr0100226 CG3091 protein_coding CG8478-S2-modencode_R2_peak_1616 chr3L 16703109 16703344 + 16 NA intron (FBgn0264605, intron 1 of 5) protein_coding-intron (FBgn0063485, intron 1 of 6) 1551 FBgn0264605 FBgn0264605 FBtr0333628 CG43954 protein_coding CG8478-S2-modencode_R2_peak_939 chr2R 13676564 13676984 + 16 NA promoter-TSS (FBgn0028744) protein_coding-promoter-TSS (FBgn0028744) 140 FBgn0026316 FBgn0026316 FBtr0089553 UbcD10 protein_coding CG8478-S2-modencode_R2_peak_3200 chrX 16226805 16226947 + 16 NA promoter-TSS (FBgn0030743) protein_coding-promoter-TSS (FBgn0030743) 551 FBgn0030743 FBgn0030743 FBtr0074235 CG9921 protein_coding CG8478-S2-modencode_R2_peak_1934 chr3R 5385733 5385843 + 16 NA promoter-TSS (FBgn0024833) protein_coding-promoter-TSS (FBgn0024833) 301 FBgn0027950 FBgn0027950 FBtr0082069 MBD-like protein_coding CG8478-S2-modencode_R2_peak_1079 chr2R 16961233 16961572 + 16 NA promoter-TSS (FBgn0003748) protein_coding-promoter-TSS (FBgn0003748) -1112 FBgn0034583 FBgn0034583 FBtr0071541 CG10527 protein_coding CG8478-S2-modencode_R2_peak_2149 chr3R 12884904 12885105 + 16 NA intron (FBgn0020493, intron 3 of 7) protein_coding-intron (FBgn0020493, intron 3 of 7) 5275 FBgn0020493 FBgn0020493 FBtr0083394 Dad protein_coding CG8478-S2-modencode_R2_peak_690 chr2R 6981326 6982871 + 16 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -7954 FBgn0262818 FBgn0262818 FBtr0306050 CG43189 protein_coding CG8478-S2-modencode_R2_peak_1072 chr2R 16772056 16772261 + 16 NA exon (FBgn0015524, exon 6 of 6) protein_coding-exon (FBgn0015524, exon 6 of 6) 4723 FBgn0034558 FBgn0034558 FBtr0304717 CG9236 protein_coding CG8478-S2-modencode_R2_peak_917 chr2R 13152610 13152816 + 16 NA promoter-TSS (FBgn0261642) protein_coding-promoter-TSS (FBgn0261642) 2869 FBgn0261642 FBgn0261642 FBtr0086993 mbl protein_coding CG8478-S2-modencode_R2_peak_146 chr2L 6644161 6644368 + 16 NA intron (FBgn0051635, intron 2 of 8) protein_coding-intron (FBgn0051635, intron 2 of 6) 4850 FBgn0051635 FBgn0051635 FBtr0331190 CG31635 protein_coding CG8478-S2-modencode_R2_peak_1395 chr3L 7830155 7830452 + 16 NA intron (FBgn0016694, intron 1 of 5) protein_coding-intron (FBgn0016694, intron 1 of 4) -27378 FBgn0052369 FBgn0052369 FBtr0076783 CG32369 protein_coding CG8478-S2-modencode_R2_peak_2726 chrX 3246120 3247105 + 16 NA Intergenic Intergenic -20580 FBgn0262656 FBgn0262656 FBtr0070525 dm protein_coding CG8478-S2-modencode_R2_peak_2814 chrX 4928605 4928729 + 16 NA Intergenic Intergenic -13663 FBgn0003028 FBgn0003028 FBtr0100408 ovo protein_coding CG8478-S2-modencode_R2_peak_2424 chr3R 23089215 23089285 + 16 NA TTS (FBgn0039503) protein_coding-TTS (FBgn0039503) 1902 FBgn0039503 FBgn0039503 FBtr0085177 CG14262 protein_coding CG8478-S2-modencode_R2_peak_872 chr2R 11984827 11985139 + 16 NA intron (FBgn0034072, intron 1 of 14) protein_coding-intron (FBgn0034072, intron 1 of 13) 1062 FBgn0034072 FBgn0034072 FBtr0087258 Dg protein_coding CG8478-S2-modencode_R2_peak_2876 chrX 7502115 7502539 + 16 NA promoter-TSS (FBgn0004198) protein_coding-promoter-TSS (FBgn0004198) -854 FBgn0004198 FBgn0004198 FBtr0071069 ct protein_coding CG8478-S2-modencode_R2_peak_1182 chr2R 20830643 20830870 + 16 NA promoter-TSS (FBgn0035083) protein_coding-promoter-TSS (FBgn0035083) -1124 FBgn0035083 FBgn0035083 FBtr0100389 Tina-1 protein_coding CG8478-S2-modencode_R2_peak_2434 chr3R 24460118 24460510 + 16 NA exon (FBgn0039590, exon 1 of 6) protein_coding-exon (FBgn0039590, exon 1 of 6) 471 FBgn0039590 FBgn0039590 FBtr0085319 CG10011 protein_coding CG8478-S2-modencode_R2_peak_1380 chr3L 6982038 6982288 + 16 NA Intergenic Intergenic -1559 FBgn0045759 FBgn0045759 FBtr0076900 bin protein_coding CG8478-S2-modencode_R2_peak_1484 chr3L 10657906 10658790 + 16 NA TTS (FBgn0052068) protein_coding-TTS (FBgn0052068) 509 FBgn0010762 FBgn0010762 FBtr0331573 simj protein_coding CG8478-S2-modencode_R2_peak_2848 chrX 6494597 6494803 + 16 NA TTS (FBgn0029879) protein_coding-TTS (FBgn0029879) -1658 FBgn0029881 FBgn0029881 FBtr0308653 pigs protein_coding CG8478-S2-modencode_R2_peak_1301 chr3L 3405948 3406457 + 16 NA intron (FBgn0014388, intron 1 of 1) protein_coding-intron (FBgn0014388, intron 1 of 1) 5985 FBgn0262260 FBgn0262260 FBtr0304360 mir-2282 pre_miRNA CG8478-S2-modencode_R2_peak_743 chr2R 7514073 7514574 + 16 NA intron (FBgn0033638, intron 2 of 7) protein_coding-intron (FBgn0033638, intron 2 of 7) -7795 FBgn0086712 FBgn0086712 FBtr0088090 Egm protein_coding CG8478-S2-modencode_R2_peak_1857 chr3R 3366988 3367175 + 16 NA promoter-TSS (FBgn0015571) protein_coding-promoter-TSS (FBgn0015571) -42 FBgn0015571 FBgn0015571 FBtr0310527 alpha-Est3 protein_coding CG8478-S2-modencode_R2_peak_1417 chr3L 8088796 8089456 + 16 NA promoter-TSS (FBgn0262579) protein_coding-promoter-TSS (FBgn0262579) -4240 FBgn0035833 FBgn0035833 FBtr0076738 CG7565 protein_coding CG8478-S2-modencode_R2_peak_863 chr2R 11748790 11749524 + 16 NA promoter-TSS (FBgn0022160) protein_coding-promoter-TSS (FBgn0022160) -308 FBgn0022160 FBgn0022160 FBtr0112900 Gpo-1 protein_coding CG8478-S2-modencode_R2_peak_47 chr2L 1649912 1650180 + 16 NA Intergenic Intergenic -1212 FBgn0086758 FBgn0086758 FBtr0077878 chinmo protein_coding CG8478-S2-modencode_R2_peak_2395 chr3R 21943993 21944071 + 16 NA intron (FBgn0051324, intron 3 of 4) protein_coding-intron (FBgn0051324, intron 1 of 2) -8349 FBgn0039413 FBgn0039413 FBtr0273389 CG14556 protein_coding CG8478-S2-modencode_R2_peak_1514 chr3L 11279118 11279250 + 16 NA Intergenic Intergenic 9835 FBgn0036152 FBgn0036152 FBtr0076183 CG6175 protein_coding CG8478-S2-modencode_R2_peak_1093 chr2R 17270823 17270996 + 16 NA exon (FBgn0034626, exon 2 of 2) protein_coding-exon (FBgn0034626, exon 2 of 2) 937 FBgn0034626 FBgn0034626 FBtr0071609 CG10795 protein_coding CG8478-S2-modencode_R2_peak_1885 chr3R 4639765 4640168 + 16 NA promoter-TSS (FBgn0037635) protein_coding-promoter-TSS (FBgn0037635) -4433 FBgn0037635 FBgn0037635 FBtr0309099 CG9837 protein_coding CG8478-S2-modencode_R2_peak_862 chr2R 11735571 11735695 + 16 NA promoter-TSS (FBgn0034046) protein_coding-promoter-TSS (FBgn0034046) -478 FBgn0034046 FBgn0034046 FBtr0087287 tun protein_coding CG8478-S2-modencode_R2_peak_1158 chr2R 19640822 19640940 + 16 NA TTS (FBgn0034901) protein_coding-TTS (FBgn0034901) 617 FBgn0034902 FBgn0034902 FBtr0072091 CG5532 protein_coding CG8478-S2-modencode_R2_peak_1609 chr3L 16606285 16606495 + 16 NA TTS (FBgn0025558) protein_coding-TTS (FBgn0025558) 804 FBgn0025558 FBgn0025558 FBtr0075314 CG4101 protein_coding CG8478-S2-modencode_R2_peak_859 chr2R 11632996 11633270 + 16 NA intron (FBgn0050089, intron 3 of 6) protein_coding-intron (FBgn0050089, intron 3 of 6) 18230 FBgn0050089 FBgn0050089 FBtr0087285 CG30089 protein_coding CG8478-S2-modencode_R2_peak_705 chr2R 7072182 7072518 + 16 NA intron (FBgn0003396, intron 1 of 7) protein_coding-intron (FBgn0003396, intron 1 of 7) 11042 FBgn0003396 FBgn0003396 FBtr0088100 shn protein_coding CG8478-S2-modencode_R2_peak_3204 chrX 16316054 16316188 + 16 NA promoter-TSS (FBgn0026575) protein_coding-promoter-TSS (FBgn0026575) 154 FBgn0030749 FBgn0030749 FBtr0074303 Anxb11 protein_coding CG8478-S2-modencode_R2_peak_2418 chr3R 22937036 22937233 + 16 NA exon (FBgn0039487, exon 1 of 6) protein_coding-exon (FBgn0039487, exon 1 of 6) 843 FBgn0039487 FBgn0039487 FBtr0085132 gb protein_coding CG8478-S2-modencode_R2_peak_2135 chr3R 12278708 12279398 + 16 NA exon (FBgn0044826, exon 1 of 2) protein_coding-exon (FBgn0044826, exon 1 of 2) 497 FBgn0044826 FBgn0044826 FBtr0083312 Pak3 protein_coding CG8478-S2-modencode_R2_peak_285 chr2L 12521638 12521752 + 16 NA intron (FBgn0259176, intron 5 of 7) protein_coding-intron (FBgn0259176, intron 5 of 7) 13587 FBgn0263458 FBgn0263458 FBtr0309757 snoRNA:CG43051-a snoRNA CG8478-S2-modencode_R2_peak_3244 chrX 18409980 18410099 + 16 NA exon (FBgn0027087, exon 1 of 6) protein_coding-exon (FBgn0027087, exon 1 of 6) 578 FBgn0027087 FBgn0027087 FBtr0333806 Aats-his protein_coding CG8478-S2-modencode_R2_peak_1184 chr2R 20888150 20888277 + 16 NA intron (FBgn0005634, intron 4 of 13) protein_coding-intron (FBgn0005634, intron 4 of 13) 10783 FBgn0005634 FBgn0005634 FBtr0302574 zip protein_coding CG8478-S2-modencode_R2_peak_2675 chrX 1964310 1964865 + 16 NA promoter-TSS (FBgn0025628) protein_coding-promoter-TSS (FBgn0025628) -1859 FBgn0025630 FBgn0025630 FBtr0070330 CG4061 protein_coding CG8478-S2-modencode_R2_peak_1196 chr3L 342991 343128 + 16 NA promoter-TSS (FBgn0035132) protein_coding-promoter-TSS (FBgn0035132) -144 FBgn0035132 FBgn0035132 FBtr0072572 mthl10 protein_coding CG8478-S2-modencode_R2_peak_2405 chr3R 22084735 22085146 + 16 NA promoter-TSS (FBgn0000064) protein_coding-promoter-TSS (FBgn0000064) 2373 FBgn0000064 FBgn0000064 FBtr0085000 Ald protein_coding CG8478-S2-modencode_R2_peak_1041 chr2R 15307630 15307797 + 16 NA intron (FBgn0263391, intron 1 of 12) protein_coding-intron (FBgn0263391, intron 2 of 11) 4738 FBgn0263391 FBgn0263391 FBtr0309107 hts protein_coding CG8478-S2-modencode_R2_peak_1244 chr3L 1102909 1103163 + 16 NA Intergenic Intergenic -1947 FBgn0004870 FBgn0004870 FBtr0072643 bab1 protein_coding CG8478-S2-modencode_R2_peak_1883 chr3R 4638071 4638425 + 16 NA intron (FBgn0037635, intron 1 of 1) protein_coding-intron (FBgn0037635, intron 1 of 1) -2715 FBgn0037635 FBgn0037635 FBtr0309099 CG9837 protein_coding CG8478-S2-modencode_R2_peak_227 chr2L 9083007 9083087 + 16 NA Intergenic Intergenic -1060 FBgn0032095 FBgn0032095 FBtr0079768 Toll-4 protein_coding CG8478-S2-modencode_R2_peak_1192 chr3L 129307 129894 + 16 NA exon (FBgn0020386, exon 1 of 6) protein_coding-exon (FBgn0020386, exon 1 of 6) 150 FBgn0020386 FBgn0020386 FBtr0072471 Pdk1 protein_coding CG8478-S2-modencode_R2_peak_1010 chr2R 14692873 14693008 + 16 NA Intergenic Intergenic -3036 FBgn0010651 FBgn0010651 FBtr0086635 l(2)08717 protein_coding CG8478-S2-modencode_R2_peak_1901 chr3R 5008383 5008511 + 16 NA intron (FBgn0003165, intron 8 of 12) protein_coding-intron (FBgn0003165, intron 8 of 12) 5208 FBgn0037662 FBgn0037662 FBtr0081972 CG11997 protein_coding CG8478-S2-modencode_R2_peak_2855 chrX 6690161 6690482 + 16 NA promoter-TSS (FBgn0259228) protein_coding-promoter-TSS (FBgn0259228) 7258 FBgn0259228 FBgn0259228 FBtr0299795 C3G protein_coding CG8478-S2-modencode_R2_peak_2989 chrX 9770295 9770721 + 16 NA exon (FBgn0030156, exon 1 of 2) protein_coding-exon (FBgn0030156, exon 1 of 2) 197 FBgn0030156 FBgn0030156 FBtr0071397 CG15247 protein_coding CG8478-S2-modencode_R2_peak_3051 chrX 11030397 11030759 + 16 NA promoter-TSS (FBgn0030268) protein_coding-promoter-TSS (FBgn0030268) -122 FBgn0030268 FBgn0030268 FBtr0073476 Klp10A protein_coding CG8478-S2-modencode_R2_peak_2274 chr3R 18454414 18454614 + 16 NA promoter-TSS (FBgn0263452) ncRNA-promoter-TSS (FBgn0263452) -5 FBgn0263452 FBgn0263452 FBtr0309305 CR43475 ncRNA CG8478-S2-modencode_R2_peak_337 chr2L 16279744 16279923 + 16 NA intron (FBgn0001994, intron 1 of 2) protein_coding-intron (FBgn0001994, intron 1 of 2) 7895 FBgn0001994 FBgn0001994 FBtr0080854 crp protein_coding CG8478-S2-modencode_R2_peak_1938 chr3R 5422855 5423529 + 16 NA intron (FBgn0037720, intron 1 of 4) protein_coding-intron (FBgn0037720, intron 1 of 4) -6483 FBgn0037719 FBgn0037719 FBtr0100537 bocksbeutel protein_coding CG8478-S2-modencode_R2_peak_864 chr2R 11750509 11750680 + 16 NA promoter-TSS (FBgn0022160) protein_coding-promoter-TSS (FBgn0022160) -1745 FBgn0022160 FBgn0022160 FBtr0112900 Gpo-1 protein_coding CG8478-S2-modencode_R2_peak_2419 chr3R 22937530 22937884 + 16 NA promoter-TSS (FBgn0027574) protein_coding-promoter-TSS (FBgn0027574) 270 FBgn0039487 FBgn0039487 FBtr0085132 gb protein_coding CG8478-S2-modencode_R2_peak_359 chr2L 17449673 17449867 + 16 NA intron (FBgn0260632, intron 1 of 9) protein_coding-intron (FBgn0260632, intron 1 of 9) -1260 FBgn0260632 FBgn0260632 FBtr0081007 dl protein_coding CG8478-S2-modencode_R2_peak_2056 chr3R 10529215 10529883 + 16 NA intron (FBgn0262127, intron 1 of 8) protein_coding-intron (FBgn0262127, intron 1 of 8) -6492 FBgn0051314 FBgn0051314 FBtr0301499 Neu3 protein_coding CG8478-S2-modencode_R2_peak_750 chr2R 7528070 7528386 + 16 NA TTS (FBgn0033639) protein_coding-TTS (FBgn0033639) 190 FBgn0033638 FBgn0033638 FBtr0088089 CG9005 protein_coding CG8478-S2-modencode_R2_peak_440 chr2R 134971 135214 + 16 NA Intergenic Intergenic -4648 FBgn0262117 FBgn0262117 FBtr0111269 IntS3 protein_coding CG8478-S2-modencode_R2_peak_2116 chr3R 12073107 12073395 + 16 NA intron (FBgn0040071, intron 1 of 1) protein_coding-intron (FBgn0040071, intron 1 of 1) 4710 FBgn0040071 FBgn0040071 FBtr0083258 tara protein_coding CG8478-S2-modencode_R2_peak_1107 chr2R 17590320 17590499 + 16 NA promoter-TSS (FBgn0010228) protein_coding-promoter-TSS (FBgn0010228) 4 FBgn0010228 FBgn0010228 FBtr0071674 HmgZ protein_coding CG8478-S2-modencode_R2_peak_1836 chr3R 2729322 2729396 + 16 NA exon (FBgn0262897, exon 2 of 2) protein_coding-exon (FBgn0262897, exon 2 of 2) 1045 FBgn0262897 FBgn0262897 FBtr0306313 CG43252 protein_coding CG8478-S2-modencode_R2_peak_2441 chr3R 24865772 24865857 + 16 NA intron (FBgn0003093, intron 1 of 9) protein_coding-intron (FBgn0003093, intron 1 of 10) 918 FBgn0003093 FBgn0003093 FBtr0301516 Pkc98E protein_coding CG8478-S2-modencode_R2_peak_1409 chr3L 8048977 8049912 + 16 NA promoter-TSS (FBgn0026263) protein_coding-promoter-TSS (FBgn0026263) 31 FBgn0026263 FBgn0026263 FBtr0302329 bip1 protein_coding CG8478-S2-modencode_R2_peak_2912 chrX 8463212 8463562 + 16 NA TTS (FBgn0030050) protein_coding-TTS (FBgn0030050) 1594 FBgn0030050 FBgn0030050 FBtr0071232 CG12111 protein_coding CG8478-S2-modencode_R2_peak_3261 chrX 19052787 19053111 + 16 NA promoter-TSS (FBgn0261461) protein_coding-promoter-TSS (FBgn0261461) 10306 FBgn0263571 FBgn0263571 FBtr0309726 mir-4959 pre_miRNA CG8478-S2-modencode_R2_peak_1865 chr3R 3935727 3935888 + 16 NA intron (FBgn0243512, intron 2 of 3) protein_coding-intron (FBgn0243512, intron 2 of 3) 4750 FBgn0243512 FBgn0243512 FBtr0081792 puc protein_coding CG8478-S2-modencode_R2_peak_2715 chrX 2555855 2555940 + 16 NA intron (FBgn0003371, intron 1 of 8) protein_coding-intron (FBgn0003371, intron 2 of 9) 18847 FBgn0003371 FBgn0003371 FBtr0112828 sgg protein_coding CG8478-S2-modencode_R2_peak_919 chr2R 13157560 13157821 + 16 NA intron (FBgn0261642, intron 1 of 7) protein_coding-intron (FBgn0261642, intron 1 of 3) 7846 FBgn0261642 FBgn0261642 FBtr0086993 mbl protein_coding CG8478-S2-modencode_R2_peak_1345 chr3L 4240390 4240664 + 16 NA intron (FBgn0035515, intron 1 of 6) protein_coding-intron (FBgn0035515, intron 2 of 7) 219 FBgn0035515 FBgn0035515 FBtr0073226 CG14997 protein_coding CG8478-S2-modencode_R2_peak_2018 chr3R 8544994 8545149 + 16 NA intron (FBgn0002719, intron 1 of 2) protein_coding-intron (FBgn0002719, intron 2 of 3) 443 FBgn0002719 FBgn0002719 FBtr0330025 Men protein_coding CG8478-S2-modencode_R2_peak_2439 chr3R 24715622 24715746 + 16 NA promoter-TSS (FBgn0053203) protein_coding-promoter-TSS (FBgn0053203) -961 FBgn0053203 FBgn0053203 FBtr0301016 CG33203 protein_coding CG8478-S2-modencode_R2_peak_2724 chrX 3189512 3189678 + 16 NA intron (FBgn0000479, intron 5 of 15) protein_coding-intron (FBgn0000479, intron 4 of 14) 20840 FBgn0029656 FBgn0029656 FBtr0070536 CG10793 protein_coding CG8478-S2-modencode_R2_peak_1561 chr3L 14267115 14267338 + 16 NA promoter-TSS (FBgn0001085) protein_coding-promoter-TSS (FBgn0001085) -217 FBgn0001085 FBgn0001085 FBtr0075742 fz protein_coding CG8478-S2-modencode_R2_peak_650 chr2R 6453253 6453456 + 16 NA intron (FBgn0263102, intron 3 of 10) protein_coding-intron (FBgn0263102, intron 3 of 9) 7961 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding CG8478-S2-modencode_R2_peak_1988 chr3R 7393717 7393817 + 16 NA promoter-TSS (FBgn0037913) protein_coding-promoter-TSS (FBgn0037913) -996 FBgn0037913 FBgn0037913 FBtr0100321 fabp protein_coding CG8478-S2-modencode_R2_peak_1670 chr3L 17997664 17998106 + 16 NA intron (FBgn0000568, intron 3 of 7) protein_coding-intron (FBgn0000568, intron 1 of 5) -1707 FBgn0086081 FBgn0086081 FBtr0114357 snoRNA:Me28S-A30 snoRNA CG8478-S2-modencode_R2_peak_495 chr2R 2515954 2516503 + 16 NA intron (FBgn0262736, intron 2 of 3) protein_coding-intron (FBgn0262736, intron 2 of 3) 3658 FBgn0262736 FBgn0262736 FBtr0086153 Vha16-1 protein_coding CG8478-S2-modencode_R2_peak_19 chr2L 493573 493850 + 16 NA intron (FBgn0003963, intron 2 of 8) protein_coding-intron (FBgn0003963, intron 1 of 7) -14023 FBgn0043364 FBgn0043364 FBtr0310030 cbt protein_coding CG8478-S2-modencode_R2_peak_1758 chr3L 21872403 21872631 + 16 NA promoter-TSS (FBgn0262737) protein_coding-promoter-TSS (FBgn0262737) 7622 FBgn0264470 FBgn0264470 FBtr0332737 CR43878 ncRNA CG8478-S2-modencode_R2_peak_1366 chr3L 5746215 5746419 + 16 NA promoter-TSS (FBgn0016756) protein_coding-promoter-TSS (FBgn0016756) 244 FBgn0016756 FBgn0016756 FBtr0077096 Ubp64E protein_coding CG8478-S2-modencode_R2_peak_1983 chr3R 6688703 6688792 + 16 NA promoter-TSS (FBgn0037846) protein_coding-promoter-TSS (FBgn0037846) -37 FBgn0037846 FBgn0037846 FBtr0082297 CG6574 protein_coding CG8478-S2-modencode_R2_peak_1696 chr3L 18805175 18805719 + 16 NA intron (FBgn0036814, intron 2 of 5) protein_coding-intron (FBgn0036814, intron 2 of 5) 8328 FBgn0036814 FBgn0036814 FBtr0332801 CG14073 protein_coding CG8478-S2-modencode_R2_peak_1446 chr3L 9342401 9342477 + 16 NA promoter-TSS (FBgn0035977) protein_coding-promoter-TSS (FBgn0035977) -270 FBgn0035977 FBgn0035977 FBtr0076439 PGRP-LF protein_coding CG8478-S2-modencode_R2_peak_2472 chr3R 25608828 25609103 + 16 NA intron (FBgn0001297, intron 1 of 2) protein_coding-intron (FBgn0001297, intron 1 of 2) -2512 FBgn0039694 FBgn0039694 FBtr0085538 fig protein_coding CG8478-S2-modencode_R2_peak_1309 chr3L 3432931 3433026 + 16 NA intron (FBgn0026259, intron 7 of 8) protein_coding-intron (FBgn0026259, intron 7 of 8) -15051 FBgn0014388 FBgn0014388 FBtr0073146 sty protein_coding CG8478-S2-modencode_R2_peak_1488 chr3L 10706208 10706411 + 16 NA Intergenic Intergenic -16332 FBgn0036101 FBgn0036101 FBtr0089571 NijA protein_coding CG8478-S2-modencode_R2_peak_1666 chr3L 17987183 17987877 + 16 NA intron (FBgn0000568, intron 3 of 7) protein_coding-intron (FBgn0000568, intron 1 of 5) 8648 FBgn0086081 FBgn0086081 FBtr0114357 snoRNA:Me28S-A30 snoRNA CG8478-S2-modencode_R2_peak_2583 chrM 2856 2991 + 16 NA NA NA NA NA CG8478-S2-modencode_R2_peak_831 chr2R 10371204 10371595 + 16 NA intron (FBgn0001332, intron 1 of 3) protein_coding-intron (FBgn0001332, intron 1 of 3) 2683 FBgn0001332 FBgn0001332 FBtr0087492 L protein_coding CG8478-S2-modencode_R2_peak_2330 chr3R 20047211 20047423 + 16 NA promoter-TSS (FBgn0026257) protein_coding-promoter-TSS (FBgn0026257) 370 FBgn0011725 FBgn0011725 FBtr0084567 twin protein_coding CG8478-S2-modencode_R2_peak_869 chr2R 11887897 11888007 + 16 NA promoter-TSS (FBgn0034060) protein_coding-promoter-TSS (FBgn0034060) -163 FBgn0020236 FBgn0020236 FBtr0300598 ATPCL protein_coding CG8478-S2-modencode_R2_peak_711 chr2R 7085924 7086204 + 15 NA exon (FBgn0003396, exon 1 of 7) protein_coding-exon (FBgn0003396, exon 1 of 7) 20705 FBgn0033582 FBgn0033582 FBtr0330635 CG9084 protein_coding CG8478-S2-modencode_R2_peak_973 chr2R 14286859 14287590 + 15 NA promoter-TSS (FBgn0063497) protein_coding-promoter-TSS (FBgn0063497) 226 FBgn0063498 FBgn0063498 FBtr0086670 GstE2 protein_coding CG8478-S2-modencode_R2_peak_717 chr2R 7093997 7094118 + 15 NA intron (FBgn0003396, intron 1 of 6) protein_coding-intron (FBgn0003396, intron 2 of 7) 12712 FBgn0033582 FBgn0033582 FBtr0330635 CG9084 protein_coding CG8478-S2-modencode_R2_peak_2561 chr4 332932 333099 + 15 NA exon (FBgn0039902, exon 3 of 3) protein_coding-exon (FBgn0039902, exon 3 of 3) 1698 FBgn0039902 FBgn0039902 FBtr0089133 CG2177 protein_coding CG8478-S2-modencode_R2_peak_695 chr2R 6987712 6988267 + 15 NA intron (FBgn0040765, intron 1 of 4) protein_coding-intron (FBgn0040765, intron 1 of 4) 6332 FBgn0040765 FBgn0040765 FBtr0088210 luna protein_coding CG8478-S2-modencode_R2_peak_329 chr2L 15499398 15499567 + 15 NA intron (FBgn0002524, intron 1 of 3) protein_coding-intron (FBgn0002524, intron 1 of 3) 372 FBgn0002524 FBgn0002524 FBtr0080738 lace protein_coding CG8478-S2-modencode_R2_peak_3143 chrX 13641407 13641622 + 15 NA intron (FBgn0030520, intron 3 of 3) protein_coding-intron (FBgn0030520, intron 3 of 3) 2553 FBgn0262108 FBgn0262108 FBtr0304031 CR42861 ncRNA CG8478-S2-modencode_R2_peak_2378 chr3R 21834111 21834501 + 15 NA Intergenic Intergenic -2309 FBgn0002732 FBgn0002732 FBtr0084956 malpha protein_coding CG8478-S2-modencode_R2_peak_2310 chr3R 19427204 19427581 + 15 NA promoter-TSS (FBgn0051143) tRNA-promoter-TSS (FBgn0051143) -215 FBgn0051143 FBgn0051143 FBtr0084482 tRNA:CR31143 tRNA CG8478-S2-modencode_R2_peak_109 chr2L 4997368 4998155 + 15 NA promoter-TSS (FBgn0053113) protein_coding-promoter-TSS (FBgn0053113) 7167 FBgn0053113 FBgn0053113 FBtr0301538 Rtnl1 protein_coding CG8478-S2-modencode_R2_peak_2068 chr3R 10953850 10954590 + 15 NA intron (FBgn0261859, intron 1 of 9) protein_coding-intron (FBgn0261859, intron 1 of 9) 2294 FBgn0262315 FBgn0262315 FBtr0304477 mir-2493 pre_miRNA CG8478-S2-modencode_R2_peak_2796 chrX 4255655 4255798 + 15 NA intron (FBgn0262738, intron 15 of 15) protein_coding-intron (FBgn0262738, intron 14 of 14) 4190 FBgn0262339 FBgn0262339 FBtr0304529 mir-982 pre_miRNA CG8478-S2-modencode_R2_peak_1273 chr3L 2808144 2808462 + 15 NA intron (FBgn0263392, intron 5 of 10) protein_coding-intron (FBgn0263392, intron 4 of 9) 26048 FBgn0035375 FBgn0035375 FBtr0333442 pgant6 protein_coding CG8478-S2-modencode_R2_peak_1201 chr3L 531261 531350 + 15 NA intron (FBgn0001316, intron 1 of 16) protein_coding-intron (FBgn0001316, intron 1 of 18) 2966 FBgn0085298 FBgn0085298 FBtr0112464 CG34269 protein_coding CG8478-S2-modencode_R2_peak_510 chr2R 3137656 3137920 + 15 NA exon (FBgn0033153, exon 1 of 1) protein_coding-exon (FBgn0033153, exon 1 of 1) 1120 FBgn0033153 FBgn0033153 FBtr0089049 Gadd45 protein_coding CG8478-S2-modencode_R2_peak_1642 chr3L 17571981 17572053 + 15 NA intron (FBgn0000567, intron 5 of 7) protein_coding-intron (FBgn0000567, intron 5 of 7) -12755 FBgn0086080 FBgn0086080 FBtr0114356 snoRNA:Me28S-A576 snoRNA CG8478-S2-modencode_R2_peak_2409 chr3R 22359844 22359989 + 15 NA intron (FBgn0039431, intron 1 of 10) protein_coding-intron (FBgn0039431, intron 1 of 10) 1023 FBgn0039431 FBgn0039431 FBtr0302210 CG6490 protein_coding CG8478-S2-modencode_R2_peak_1476 chr3L 10376885 10377017 + 15 NA Intergenic Intergenic 18570 FBgn0262439 FBgn0262439 FBtr0304433 mir-276a pre_miRNA CG8478-S2-modencode_R2_peak_2093 chr3R 11820517 11820676 + 15 NA exon (FBgn0003507, exon 1 of 7) protein_coding-exon (FBgn0003507, exon 1 of 7) 8673 FBgn0003507 FBgn0003507 FBtr0083216 srp protein_coding CG8478-S2-modencode_R2_peak_320 chr2L 14021597 14022151 + 15 NA Intergenic Intergenic -1666 FBgn0001967 FBgn0001967 FBtr0290243 nimC3 protein_coding CG8478-S2-modencode_R2_peak_978 chr2R 14296685 14297281 + 15 NA TTS (FBgn0063492) protein_coding-TTS (FBgn0063492) 467 FBgn0063491 FBgn0063491 FBtr0086677 GstE9 protein_coding CG8478-S2-modencode_R2_peak_53 chr2L 1728390 1728463 + 15 NA promoter-TSS (FBgn0260648) protein_coding-promoter-TSS (FBgn0260648) -306 FBgn0260648 FBgn0260648 FBtr0077883 Rrp40 protein_coding CG8478-S2-modencode_R2_peak_1740 chr3L 21033009 21033113 + 15 NA intron (FBgn0026179, intron 1 of 5) protein_coding-intron (FBgn0026179, intron 1 of 5) -5758 FBgn0037046 FBgn0037046 FBtr0078326 CG10581 protein_coding CG8478-S2-modencode_R2_peak_385 chr2L 19138650 19138816 + 15 NA intron (FBgn0010300, intron 1 of 4) protein_coding-intron (FBgn0010300, intron 1 of 3) -3500 FBgn0086447 FBgn0086447 FBtr0081161 l(2)37Cg protein_coding CG8478-S2-modencode_R2_peak_3129 chrX 13025108 13025331 + 15 NA promoter-TSS (FBgn0030452) protein_coding-promoter-TSS (FBgn0030452) -352 FBgn0030452 FBgn0030452 FBtr0073724 MFS10 protein_coding CG8478-S2-modencode_R2_peak_232 chr2L 9238522 9238670 + 15 NA intron (FBgn0041092, intron 4 of 12) protein_coding-intron (FBgn0041092, intron 5 of 14) -2002 FBgn0051885 FBgn0051885 FBtr0079820 tRNA:CR31885 tRNA CG8478-S2-modencode_R2_peak_1956 chr3R 5914357 5914453 + 15 NA Intergenic Intergenic -2498 FBgn0262378 FBgn0262378 FBtr0304218 mir-317 pre_miRNA CG8478-S2-modencode_R2_peak_114 chr2L 5009444 5009678 + 15 NA TTS (FBgn0031668) protein_coding-TTS (FBgn0031668) 1273 FBgn0031668 FBgn0031668 FBtr0079037 CG31917 protein_coding CG8478-S2-modencode_R2_peak_751 chr2R 7544962 7545105 + 15 NA intron (FBgn0044020, intron 3 of 3) protein_coding-intron (FBgn0044020, intron 2 of 2) 2630 FBgn0033640 FBgn0033640 FBtr0088072 CG13198 protein_coding CG8478-S2-modencode_R2_peak_3054 chrX 11220221 11220301 + 15 NA promoter-TSS (FBgn0001491) protein_coding-promoter-TSS (FBgn0001491) 766 FBgn0030286 FBgn0030286 FBtr0073448 CG1657 protein_coding CG8478-S2-modencode_R2_peak_1171 chr2R 20193142 20193626 + 15 NA promoter-TSS (FBgn0003888) protein_coding-promoter-TSS (FBgn0003888) -21 FBgn0003888 FBgn0003888 FBtr0072270 betaTub60D protein_coding CG8478-S2-modencode_R2_peak_1937 chr3R 5418214 5418501 + 15 NA intron (FBgn0037720, intron 1 of 4) protein_coding-intron (FBgn0037720, intron 1 of 4) -1648 FBgn0037719 FBgn0037719 FBtr0100537 bocksbeutel protein_coding CG8478-S2-modencode_R2_peak_1653 chr3L 17906533 17906665 + 15 NA promoter-TSS (FBgn0036772) protein_coding-promoter-TSS (FBgn0036772) -934 FBgn0036772 FBgn0036772 FBtr0075152 CG5290 protein_coding CG8478-S2-modencode_R2_peak_3123 chrX 12688410 12688494 + 15 NA intron (FBgn0259171, intron 7 of 9) protein_coding-intron (FBgn0259171, intron 7 of 9) -7242 FBgn0030425 FBgn0030425 FBtr0305591 CG3775 protein_coding CG8478-S2-modencode_R2_peak_1748 chr3L 21272637 21273512 + 15 NA promoter-TSS (FBgn0012034) protein_coding-promoter-TSS (FBgn0012034) 7 FBgn0012034 FBgn0012034 FBtr0078414 AcCoAS protein_coding CG8478-S2-modencode_R2_peak_3282 chrX 19745302 19745594 + 15 NA promoter-TSS (FBgn0031078) protein_coding-promoter-TSS (FBgn0031078) -801 FBgn0031078 FBgn0031078 FBtr0074799 CG11943 protein_coding CG8478-S2-modencode_R2_peak_1018 chr2R 15033258 15033331 + 15 NA TTS (FBgn0263290) ncRNA-TTS (FBgn0263290) 1243 FBgn0263290 FBgn0263290 FBtr0308635 CR43399 ncRNA CG8478-S2-modencode_R2_peak_1520 chr3L 11486574 11486882 + 15 NA intron (FBgn0036165, intron 1 of 3) protein_coding-intron (FBgn0036165, intron 1 of 3) 6078 FBgn0036165 FBgn0036165 FBtr0076093 chrb protein_coding CG8478-S2-modencode_R2_peak_2243 chr3R 17098546 17098616 + 15 NA intron (FBgn0038877, intron 1 of 3) protein_coding-intron (FBgn0038877, intron 1 of 3) 956 FBgn0038877 FBgn0038877 FBtr0084102 CG3308 protein_coding CG8478-S2-modencode_R2_peak_576 chr2R 4541162 4541401 + 15 NA intron (FBgn0003892, intron 1 of 5) protein_coding-intron (FBgn0003892, intron 1 of 5) 4141 FBgn0003892 FBgn0003892 FBtr0089427 ptc protein_coding CG8478-S2-modencode_R2_peak_694 chr2R 6986435 6986607 + 15 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) 7800 FBgn0040765 FBgn0040765 FBtr0088210 luna protein_coding CG8478-S2-modencode_R2_peak_1249 chr3L 1367807 1368647 + 15 NA intron (FBgn0003138, intron 3 of 7) protein_coding-intron (FBgn0003138, intron 1 of 6) -2401 FBgn0003295 FBgn0003295 FBtr0072681 ru protein_coding CG8478-S2-modencode_R2_peak_630 chr2R 6402871 6403141 + 15 NA exon (FBgn0005630, exon 7 of 7) protein_coding-exon (FBgn0005630, exon 7 of 7) 19577 FBgn0005630 FBgn0005630 FBtr0089362 lola protein_coding CG8478-S2-modencode_R2_peak_918 chr2R 13157021 13157315 + 15 NA intron (FBgn0261642, intron 1 of 7) protein_coding-intron (FBgn0261642, intron 1 of 3) 7324 FBgn0261642 FBgn0261642 FBtr0086993 mbl protein_coding CG8478-S2-modencode_R2_peak_2465 chr3R 25589901 25589995 + 15 NA Intergenic Intergenic 15007 FBgn0260990 FBgn0260990 FBtr0085477 yata protein_coding CG8478-S2-modencode_R2_peak_180 chr2L 8100803 8101087 + 15 NA intron (FBgn0261822, intron 2 of 7) protein_coding-intron (FBgn0261822, intron 2 of 6) 12641 FBgn0261822 FBgn0261822 FBtr0079573 Bsg protein_coding CG8478-S2-modencode_R2_peak_2463 chr3R 25584548 25584773 + 15 NA Intergenic Intergenic 9719 FBgn0260990 FBgn0260990 FBtr0085477 yata protein_coding CG8478-S2-modencode_R2_peak_1848 chr3R 3013677 3013865 + 15 NA intron (FBgn0086372, intron 1 of 14) protein_coding-intron (FBgn0086372, intron 1 of 10) 1048 FBgn0086372 FBgn0086372 FBtr0305153 lap protein_coding CG8478-S2-modencode_R2_peak_1611 chr3L 16623653 16623952 + 15 NA intron (FBgn0000017, intron 1 of 8) protein_coding-intron (FBgn0000017, intron 1 of 7) -15230 FBgn0017572 FBgn0017572 FBtr0331560 Mo25 protein_coding CG8478-S2-modencode_R2_peak_989 chr2R 14499870 14500075 + 15 NA promoter-TSS (FBgn0034360) protein_coding-promoter-TSS (FBgn0034360) 263 FBgn0261587 FBgn0261587 FBtr0302904 CG42697 protein_coding CG8478-S2-modencode_R2_peak_1116 chr2R 17609235 17609441 + 15 NA intron (FBgn0034657, intron 1 of 1) protein_coding-intron (FBgn0034657, intron 3 of 3) 1076 FBgn0034657 FBgn0034657 FBtr0071713 LBR protein_coding CG8478-S2-modencode_R2_peak_1145 chr2R 18588061 18588523 + 15 NA promoter-TSS (FBgn0005631) protein_coding-promoter-TSS (FBgn0005631) -439 FBgn0005631 FBgn0005631 FBtr0071923 robo protein_coding CG8478-S2-modencode_R2_peak_2363 chr3R 21319574 21319722 + 15 NA TTS (FBgn0039341) protein_coding-TTS (FBgn0039341) 1235 FBgn0053494 FBgn0053494 FBtr0089607 CG33494 protein_coding CG8478-S2-modencode_R2_peak_2986 chrX 9747734 9747959 + 15 NA Intergenic Intergenic -11405 FBgn0019929 FBgn0019929 FBtr0071387 Ser7 protein_coding CG8478-S2-modencode_R2_peak_96 chr2L 3813200 3813541 + 15 NA promoter-TSS (FBgn0031573) protein_coding-promoter-TSS (FBgn0031573) 37 FBgn0031573 FBgn0031573 FBtr0077515 CG3407 protein_coding CG8478-S2-modencode_R2_peak_384 chr2L 19134956 19135124 + 15 NA exon (FBgn0086447, exon 1 of 2) protein_coding-exon (FBgn0086447, exon 1 of 2) 193 FBgn0086447 FBgn0086447 FBtr0081161 l(2)37Cg protein_coding CG8478-S2-modencode_R2_peak_1775 chr3L 22939442 22939839 + 15 NA exon (FBgn0037207, exon 2 of 3) protein_coding-exon (FBgn0037207, exon 2 of 3) 545 FBgn0037207 FBgn0037207 FBtr0078563 Mes2 protein_coding CG8478-S2-modencode_R2_peak_1556 chr3L 14104678 14104800 + 15 NA TTS (FBgn0042630) protein_coding-TTS (FBgn0042630) -3521 FBgn0036411 FBgn0036411 FBtr0330178 Sox21a protein_coding CG8478-S2-modencode_R2_peak_8 chr2L 171491 171663 + 15 NA intron (FBgn0016977, intron 3 of 13) protein_coding-intron (FBgn0016977, intron 2 of 10) -11243 FBgn0016977 FBgn0016977 FBtr0332337 spen protein_coding CG8478-S2-modencode_R2_peak_3267 chrX 19192430 19192848 + 15 NA promoter-TSS (FBgn0031011) protein_coding-promoter-TSS (FBgn0031011) 3267 FBgn0065084 FBgn0065084 FBtr0091699 snmRNA:763 ncRNA CG8478-S2-modencode_R2_peak_1324 chr3L 3543300 3543775 + 15 NA promoter-TSS (FBgn0005640) protein_coding-promoter-TSS (FBgn0005640) 27786 FBgn0005640 FBgn0005640 FBtr0110924 Eip63E protein_coding CG8478-S2-modencode_R2_peak_1890 chr3R 4727638 4727762 + 15 NA intron (FBgn0262614, intron 1 of 13) protein_coding-intron (FBgn0262614, intron 1 of 13) -33153 FBgn0003015 FBgn0003015 FBtr0081956 osk protein_coding CG8478-S2-modencode_R2_peak_600 chr2R 5763823 5763977 + 15 NA TTS (FBgn0033459) protein_coding-TTS (FBgn0033459) 1050 FBgn0033459 FBgn0033459 FBtr0088378 CG12744 protein_coding CG8478-S2-modencode_R2_peak_2875 chrX 7499637 7500067 + 15 NA Intergenic Intergenic -3329 FBgn0004198 FBgn0004198 FBtr0071069 ct protein_coding CG8478-S2-modencode_R2_peak_2736 chrX 3280827 3280979 + 15 NA TTS (FBgn0262656) protein_coding-TTS (FBgn0262656) 13711 FBgn0262656 FBgn0262656 FBtr0070525 dm protein_coding CG8478-S2-modencode_R2_peak_2114 chr3R 12053776 12053873 + 15 NA intron (FBgn0040071, intron 1 of 1) protein_coding-intron (FBgn0040071, intron 1 of 1) -14717 FBgn0040071 FBgn0040071 FBtr0083258 tara protein_coding CG8478-S2-modencode_R2_peak_559 chr2R 3956267 3956712 + 15 NA promoter-TSS (FBgn0020279) protein_coding-promoter-TSS (FBgn0020279) 1029 FBgn0020279 FBgn0020279 FBtr0100575 lig protein_coding CG8478-S2-modencode_R2_peak_1398 chr3L 7848226 7848412 + 15 NA exon (FBgn0016694, exon 1 of 5) protein_coding-exon (FBgn0016694, exon 1 of 5) 12150 FBgn0016694 FBgn0016694 FBtr0332080 Pdp1 protein_coding CG8478-S2-modencode_R2_peak_2003 chr3R 8070214 8070477 + 15 NA Intergenic Intergenic -5514 FBgn0038007 FBgn0038007 FBtr0082617 Cyp313a3 protein_coding CG8478-S2-modencode_R2_peak_974 chr2R 14288124 14288384 + 15 NA promoter-TSS (FBgn0063497) protein_coding-promoter-TSS (FBgn0063497) 32 FBgn0063497 FBgn0063497 FBtr0086671 GstE3 protein_coding CG8478-S2-modencode_R2_peak_3279 chrX 19681926 19682250 + 15 NA Intergenic Intergenic -4406 FBgn0259789 FBgn0259789 FBtr0307536 vfl protein_coding CG8478-S2-modencode_R2_peak_1438 chr3L 8705932 8706103 + 15 NA Intergenic Intergenic 7308 FBgn0011509 FBgn0011509 FBtr0076598 SrpRbeta protein_coding CG8478-S2-modencode_R2_peak_2295 chr3R 19158141 19158340 + 15 NA intron (FBgn0003118, intron 3 of 8) protein_coding-intron (FBgn0003118, intron 3 of 8) 13644 FBgn0003118 FBgn0003118 FBtr0089715 pnt protein_coding CG8478-S2-modencode_R2_peak_1884 chr3R 4639352 4639428 + 15 NA promoter-TSS (FBgn0037635) protein_coding-promoter-TSS (FBgn0037635) -3857 FBgn0037635 FBgn0037635 FBtr0309099 CG9837 protein_coding CG8478-S2-modencode_R2_peak_3214 chrX 16493619 16494160 + 15 NA promoter-TSS (FBgn0030761) protein_coding-promoter-TSS (FBgn0030761) 533 FBgn0061200 FBgn0061200 FBtr0299587 Nup153 protein_coding CG8478-S2-modencode_R2_peak_819 chr2R 9931754 9931882 + 15 NA intron (FBgn0002643, intron 3 of 5) protein_coding-intron (FBgn0002643, intron 4 of 6) 12634 FBgn0002643 FBgn0002643 FBtr0087598 mam protein_coding CG8478-S2-modencode_R2_peak_362 chr2L 17589875 17590045 + 15 NA promoter-TSS (FBgn0032651) protein_coding-promoter-TSS (FBgn0032651) -180 FBgn0032651 FBgn0032651 FBtr0303253 Oli protein_coding CG8478-S2-modencode_R2_peak_1851 chr3R 3299055 3299379 + 15 NA promoter-TSS (FBgn0043853) snoRNA-promoter-TSS (FBgn0043853) -273 FBgn0043853 FBgn0043853 FBtr0081560 snoRNA:MeU5-C46 snoRNA CG8478-S2-modencode_R2_peak_3241 chrX 18261533 18261686 + 15 NA intron (FBgn0014467, intron 2 of 5) protein_coding-intron (FBgn0014467, intron 1 of 5) 876 FBgn0014467 FBgn0014467 FBtr0300205 CrebB-17A protein_coding CG8478-S2-modencode_R2_peak_828 chr2R 10249322 10249442 + 15 NA promoter-TSS (FBgn0033928) protein_coding-promoter-TSS (FBgn0033928) -67 FBgn0033928 FBgn0033928 FBtr0087547 Arc2 protein_coding CG8478-S2-modencode_R2_peak_2701 chrX 2200519 2200783 + 15 NA intron (FBgn0003079, intron 2 of 5) protein_coding-intron (FBgn0003079, intron 2 of 5) 10734 FBgn0003079 FBgn0003079 FBtr0111025 phl protein_coding CG8478-S2-modencode_R2_peak_2031 chr3R 8847463 8847687 + 15 NA TTS (FBgn0020496) protein_coding-TTS (FBgn0020496) 8443 FBgn0038111 FBgn0038111 FBtr0113229 CG12360 protein_coding CG8478-S2-modencode_R2_peak_970 chr2R 14242817 14242941 + 15 NA intron (FBgn0010575, intron 1 of 10) protein_coding-intron (FBgn0010575, intron 1 of 11) 1922 FBgn0010575 FBgn0010575 FBtr0329996 sbb protein_coding CG8478-S2-modencode_R2_peak_2376 chr3R 21830517 21830685 + 15 NA TTS (FBgn0002733) protein_coding-TTS (FBgn0002733) 1144 FBgn0002733 FBgn0002733 FBtr0084982 HLHmbeta protein_coding CG8478-S2-modencode_R2_peak_1235 chr3L 769239 769605 + 15 NA promoter-TSS (FBgn0052480) tRNA-promoter-TSS (FBgn0052480) -81 FBgn0052480 FBgn0052480 FBtr0072579 tRNA:CR32480 tRNA CG8478-S2-modencode_R2_peak_1045 chr2R 15311548 15311862 + 15 NA promoter-TSS (FBgn0012051) protein_coding-promoter-TSS (FBgn0012051) 746 FBgn0263391 FBgn0263391 FBtr0309107 hts protein_coding CG8478-S2-modencode_R2_peak_280 chr2L 12507462 12507868 + 15 NA promoter-TSS (FBgn0261812) protein_coding-promoter-TSS (FBgn0261812) 53 FBgn0261812 FBgn0261812 FBtr0303298 CG42754 protein_coding CG8478-S2-modencode_R2_peak_2046 chr3R 9913989 9914748 + 15 NA promoter-TSS (FBgn0038198) protein_coding-promoter-TSS (FBgn0038198) -2128 FBgn0038198 FBgn0038198 FBtr0082889 Npc2b protein_coding CG8478-S2-modencode_R2_peak_1033 chr2R 15270986 15271166 + 15 NA exon (FBgn0034440, exon 7 of 11) protein_coding-exon (FBgn0034440, exon 7 of 11) -2352 FBgn0034441 FBgn0034441 FBtr0334007 CG10081 protein_coding CG8478-S2-modencode_R2_peak_1493 chr3L 10768785 10768964 + 15 NA Intergenic Intergenic 3782 FBgn0262890 FBgn0262890 FBtr0306304 CG43245 protein_coding CG8478-S2-modencode_R2_peak_2741 chrX 3307897 3308251 + 15 NA intron (FBgn0029657, intron 3 of 4) protein_coding-intron (FBgn0029657, intron 2 of 3) 13482 FBgn0052493 FBgn0052493 FBtr0070533 tRNA:CR32493 tRNA CG8478-S2-modencode_R2_peak_3202 chrX 16228358 16228797 + 15 NA intron (FBgn0011764, intron 2 of 6) protein_coding-intron (FBgn0011764, intron 2 of 6) -1150 FBgn0030743 FBgn0030743 FBtr0074235 CG9921 protein_coding CG8478-S2-modencode_R2_peak_1621 chr3L 16962766 16963261 + 15 NA promoter-TSS (FBgn0261547) protein_coding-promoter-TSS (FBgn0261547) -100 FBgn0261547 FBgn0261547 FBtr0302649 Exn protein_coding CG8478-S2-modencode_R2_peak_2940 chrX 9365560 9365676 + 15 NA intron (FBgn0261260, intron 2 of 2) protein_coding-intron (FBgn0261260, intron 2 of 14) 24603 FBgn0261260 FBgn0261260 FBtr0302154 mgl protein_coding CG8478-S2-modencode_R2_peak_1604 chr3L 16403335 16403735 + 15 NA intron (FBgn0014163, intron 1 of 4) protein_coding-intron (FBgn0014163, intron 1 of 4) -2272 FBgn0014163 FBgn0014163 FBtr0100477 fax protein_coding CG8478-S2-modencode_R2_peak_1292 chr3L 3308859 3309002 + 15 NA promoter-TSS (FBgn0035432) protein_coding-promoter-TSS (FBgn0035432) -863 FBgn0035432 FBgn0035432 FBtr0330104 ZnT63C protein_coding CG8478-S2-modencode_R2_peak_1601 chr3L 16171592 16171724 + 15 NA Intergenic Intergenic -7178 FBgn0053795 FBgn0053795 FBtr0091799 CG33795 protein_coding CG8478-S2-modencode_R2_peak_3182 chrX 15628478 15628794 + 15 NA promoter-TSS (FBgn0030676) protein_coding-promoter-TSS (FBgn0030676) 333 FBgn0026666 FBgn0026666 FBtr0332613 l(1)G0136 protein_coding CG8478-S2-modencode_R2_peak_141 chr2L 6455119 6455482 + 15 NA promoter-TSS (FBgn0031815) protein_coding-promoter-TSS (FBgn0031815) 634 FBgn0031814 FBgn0031814 FBtr0329951 retm protein_coding CG8478-S2-modencode_R2_peak_1429 chr3L 8673132 8673661 + 15 NA Intergenic Intergenic 4537 FBgn0001168 FBgn0001168 FBtr0076569 h protein_coding CG8478-S2-modencode_R2_peak_2820 chrX 5412172 5412380 + 15 NA exon (FBgn0029771, exon 3 of 3) protein_coding-exon (FBgn0029771, exon 3 of 3) 982 FBgn0029771 FBgn0029771 FBtr0070780 CG12730 protein_coding CG8478-S2-modencode_R2_peak_2869 chrX 7199917 7200139 + 15 NA intron (FBgn0029941, intron 2 of 6) protein_coding-intron (FBgn0029941, intron 2 of 6) -1946 FBgn0024250 FBgn0024250 FBtr0071048 brk protein_coding CG8478-S2-modencode_R2_peak_1771 chr3L 22887891 22888097 + 15 NA Intergenic Intergenic -3850 FBgn0037204 FBgn0037204 FBtr0078558 CG11131 protein_coding CG8478-S2-modencode_R2_peak_1332 chr3L 4105374 4105475 + 15 NA exon (FBgn0035498, exon 1 of 1) protein_coding-exon (FBgn0035498, exon 1 of 1) 1860 FBgn0035498 FBgn0035498 FBtr0073209 Fit1 protein_coding CG8478-S2-modencode_R2_peak_3232 chrX 17645923 17645993 + 15 NA TTS (FBgn0261570) protein_coding-TTS (FBgn0261570) -17458 FBgn0024184 FBgn0024184 FBtr0074460 unc-4 protein_coding CG8478-S2-modencode_R2_peak_789 chr2R 9222942 9223502 + 15 NA Intergenic Intergenic -6276 FBgn0262391 FBgn0262391 FBtr0304273 mir-184 pre_miRNA CG8478-S2-modencode_R2_peak_2371 chr3R 21708973 21709098 + 15 NA intron (FBgn0039381, intron 1 of 6) protein_coding-intron (FBgn0039381, intron 1 of 6) 1328 FBgn0039381 FBgn0039381 FBtr0084911 Sppl protein_coding CG8478-S2-modencode_R2_peak_3291 chrX 20067874 20068010 + 15 NA promoter-TSS (FBgn0000084) protein_coding-promoter-TSS (FBgn0000084) -436 FBgn0000084 FBgn0000084 FBtr0301931 AnnX protein_coding CG8478-S2-modencode_R2_peak_3199 chrX 16213249 16213650 + 15 NA intron (FBgn0004432, intron 1 of 1) protein_coding-intron (FBgn0004432, intron 1 of 1) 996 FBgn0004432 FBgn0004432 FBtr0074238 Cyp1 protein_coding CG8478-S2-modencode_R2_peak_633 chr2R 6415863 6416527 + 15 NA intron (FBgn0005630, intron 5 of 6) protein_coding-intron (FBgn0005630, intron 5 of 5) 6388 FBgn0005630 FBgn0005630 FBtr0089362 lola protein_coding CG8478-S2-modencode_R2_peak_247 chr2L 9915084 9915156 + 15 NA promoter-TSS (FBgn0040064) protein_coding-promoter-TSS (FBgn0040064) -133 FBgn0040064 FBgn0040064 FBtr0079876 yip2 protein_coding CG8478-S2-modencode_R2_peak_475 chr2R 2033769 2033975 + 15 NA intron (FBgn0000546, intron 4 of 7) protein_coding-intron (FBgn0000546, intron 3 of 6) -3923 FBgn0011891 FBgn0011891 FBtr0086017 tRNA:K2:42Ae tRNA CG8478-S2-modencode_R2_peak_1419 chr3L 8152537 8152664 + 15 NA promoter-TSS (FBgn0259916) protein_coding-promoter-TSS (FBgn0259916) 274 FBgn0264478 FBgn0264478 FBtr0332759 CG43886 protein_coding CG8478-S2-modencode_R2_peak_2052 chr3R 10480661 10480926 + 15 NA intron (FBgn0086686, intron 1 of 5) protein_coding-intron (FBgn0086686, intron 1 of 5) 119 FBgn0086686 FBgn0086686 FBtr0304678 l(3)L1231 protein_coding CG8478-S2-modencode_R2_peak_2344 chr3R 20394777 20394985 + 15 NA intron (FBgn0039209, intron 1 of 3) protein_coding-intron (FBgn0039209, intron 2 of 4) 8294 FBgn0039209 FBgn0039209 FBtr0084675 CG13624 protein_coding CG8478-S2-modencode_R2_peak_11 chr2L 246527 246643 + 15 NA intron (FBgn0086902, intron 1 of 16) protein_coding-intron (FBgn0086902, intron 1 of 17) -3509 FBgn0262252 FBgn0262252 FBtr0304344 mir-965 pre_miRNA CG8478-S2-modencode_R2_peak_1495 chr3L 10842934 10843347 + 15 NA Intergenic Intergenic -8364 FBgn0026160 FBgn0026160 FBtr0076268 tna protein_coding CG8478-S2-modencode_R2_peak_2471 chr3R 25607902 25608527 + 15 NA promoter-TSS (FBgn0001297) protein_coding-promoter-TSS (FBgn0001297) -1761 FBgn0039694 FBgn0039694 FBtr0085538 fig protein_coding CG8478-S2-modencode_R2_peak_3224 chrX 17024479 17024657 + 15 NA exon (FBgn0260748, exon 1 of 5) protein_coding-exon (FBgn0260748, exon 1 of 5) 112 FBgn0260748 FBgn0260748 FBtr0302377 CG5004 protein_coding CG8478-S2-modencode_R2_peak_3168 chrX 14920638 14921299 + 15 NA intron (FBgn0052594, intron 1 of 5) protein_coding-intron (FBgn0052594, intron 1 of 6) 2501 FBgn0052594 FBgn0052594 FBtr0310270 be protein_coding CG8478-S2-modencode_R2_peak_2826 chrX 5629272 5629947 + 15 NA intron (FBgn0052758, intron 1 of 5) protein_coding-intron (FBgn0052758, intron 1 of 5) 2825 FBgn0029795 FBgn0029795 FBtr0070806 CG15773 protein_coding CG8478-S2-modencode_R2_peak_3228 chrX 17188186 17188609 + 15 NA intron (FBgn0024238, intron 1 of 4) protein_coding-intron (FBgn0024238, intron 1 of 4) -2696 FBgn0024238 FBgn0024238 FBtr0074443 Fim protein_coding CG8478-S2-modencode_R2_peak_190 chr2L 8342516 8342627 + 15 NA promoter-TSS (FBgn0032024) protein_coding-promoter-TSS (FBgn0032024) -124 FBgn0032024 FBgn0032024 FBtr0079605 CG14273 protein_coding CG8478-S2-modencode_R2_peak_2846 chrX 6428166 6428343 + 15 NA promoter-TSS (FBgn0014026) protein_coding-promoter-TSS (FBgn0014026) 211 FBgn0000524 FBgn0000524 FBtr0070914 dx protein_coding CG8478-S2-modencode_R2_peak_1710 chr3L 19084463 19085086 + 15 NA promoter-TSS (FBgn0036846) protein_coding-promoter-TSS (FBgn0036846) -996 FBgn0036846 FBgn0036846 FBtr0330090 MESR6 protein_coding CG8478-S2-modencode_R2_peak_1705 chr3L 18988592 18988804 + 15 NA exon (FBgn0036837, exon 1 of 2) protein_coding-exon (FBgn0036837, exon 1 of 2) -2782 FBgn0036837 FBgn0036837 FBtr0332651 CG18135 protein_coding CG8478-S2-modencode_R2_peak_701 chr2R 6998233 6998630 + 15 NA Intergenic Intergenic -4110 FBgn0040765 FBgn0040765 FBtr0088210 luna protein_coding CG8478-S2-modencode_R2_peak_2150 chr3R 12904958 12905347 + 15 NA promoter-TSS (FBgn0038476) protein_coding-promoter-TSS (FBgn0038476) 513 FBgn0038475 FBgn0038475 FBtr0083423 Keap1 protein_coding CG8478-S2-modencode_R2_peak_1447 chr3L 9351516 9352013 + 15 NA promoter-TSS (FBgn0052039) protein_coding-promoter-TSS (FBgn0052039) -335 FBgn0052039 FBgn0052039 FBtr0076441 CG32039 protein_coding CG8478-S2-modencode_R2_peak_3073 chrX 11722853 11722944 + 15 NA intron (FBgn0262684, intron 7 of 7) protein_coding-intron (FBgn0262684, intron 7 of 7) -8768 FBgn0264509 FBgn0264509 FBtr0333014 CR43908 ncRNA CG8478-S2-modencode_R2_peak_1252 chr3L 1859858 1859952 + 15 NA TTS (FBgn0035283) protein_coding-TTS (FBgn0035283) 1911 FBgn0004636 FBgn0004636 FBtr0332671 R protein_coding CG8478-S2-modencode_R2_peak_2898 chrX 7855147 7855332 + 15 NA exon (FBgn0003656, exon 7 of 11) protein_coding-exon (FBgn0003656, exon 7 of 11) -2818 FBgn0003447 FBgn0003447 FBtr0301678 sn protein_coding CG8478-S2-modencode_R2_peak_3268 chrX 19199047 19199149 + 15 NA intron (FBgn0031012, intron 1 of 4) protein_coding-intron (FBgn0031012, intron 1 of 4) 2859 FBgn0031012 FBgn0031012 FBtr0074683 CG8051 protein_coding CG8478-S2-modencode_R2_peak_3255 chrX 19042926 19043187 + 15 NA intron (FBgn0261461, intron 2 of 5) protein_coding-intron (FBgn0261461, intron 1 of 4) -2279 FBgn0261461 FBgn0261461 FBtr0299625 RhoGAP18B protein_coding CG8478-S2-modencode_R2_peak_336 chr2L 16276811 16277102 + 15 NA intron (FBgn0001994, intron 2 of 2) protein_coding-intron (FBgn0001994, intron 2 of 2) 10772 FBgn0001994 FBgn0001994 FBtr0080854 crp protein_coding CG8478-S2-modencode_R2_peak_2264 chr3R 17700848 17700980 + 15 NA promoter-TSS (FBgn0038912) protein_coding-promoter-TSS (FBgn0038912) -101 FBgn0038912 FBgn0038912 FBtr0300077 CG6656 protein_coding CG8478-S2-modencode_R2_peak_2946 chrX 9390274 9390557 + 15 NA promoter-TSS (FBgn0261260) protein_coding-promoter-TSS (FBgn0261260) -194 FBgn0261260 FBgn0261260 FBtr0302154 mgl protein_coding CG8478-S2-modencode_R2_peak_2632 chrX 416626 416771 + 15 NA intron (FBgn0260400, intron 1 of 2) protein_coding-intron (FBgn0023535, intron 3 of 4) 561 FBgn0260400 FBgn0260400 FBtr0114366 elav protein_coding CG8478-S2-modencode_R2_peak_17 chr2L 431323 431720 + 15 NA exon (FBgn0004583, exon 1 of 6) protein_coding-exon (FBgn0004583, exon 1 of 6) 294 FBgn0004583 FBgn0004583 FBtr0329832 ex protein_coding CG8478-S2-modencode_R2_peak_2447 chr3R 25082842 25083060 + 15 NA Intergenic Intergenic -1449 FBgn0003525 FBgn0003525 FBtr0085397 stg protein_coding CG8478-S2-modencode_R2_peak_2053 chr3R 10513319 10513389 + 15 NA intron (FBgn0051314, intron 1 of 6) protein_coding-intron (FBgn0051314, intron 1 of 7) 9703 FBgn0051314 FBgn0051314 FBtr0301499 Neu3 protein_coding CG8478-S2-modencode_R2_peak_582 chr2R 5196071 5196348 + 15 NA promoter-TSS (FBgn0033402) protein_coding-promoter-TSS (FBgn0033402) 18 FBgn0033402 FBgn0033402 FBtr0088598 Myd88 protein_coding CG8478-S2-modencode_R2_peak_3167 chrX 14918855 14919135 + 15 NA intron (FBgn0052594, intron 1 of 5) protein_coding-intron (FBgn0052594, intron 1 of 6) 528 FBgn0052594 FBgn0052594 FBtr0310270 be protein_coding CG8478-S2-modencode_R2_peak_3263 chrX 19054565 19054744 + 15 NA intron (FBgn0261461, intron 2 of 5) protein_coding-intron (FBgn0261461, intron 1 of 4) 8601 FBgn0263571 FBgn0263571 FBtr0309726 mir-4959 pre_miRNA CG8478-S2-modencode_R2_peak_642 chr2R 6441539 6441688 + 15 NA Intergenic Intergenic -3780 FBgn0263102 FBgn0263102 FBtr0100606 psq protein_coding CG8478-S2-modencode_R2_peak_2340 chr3R 20369390 20369556 + 15 NA promoter-TSS (FBgn0039208) protein_coding-promoter-TSS (FBgn0039208) -326 FBgn0039207 FBgn0039207 FBtr0306025 CG5789 protein_coding CG8478-S2-modencode_R2_peak_1266 chr3L 2575777 2576132 + 15 NA intron (FBgn0010909, intron 3 of 17) protein_coding-intron (FBgn0010909, intron 3 of 18) 10586 FBgn0010909 FBgn0010909 FBtr0333362 msn protein_coding CG8478-S2-modencode_R2_peak_1917 chr3R 5177297 5177672 + 15 NA intron (FBgn0263749, intron 2 of 5) protein_coding-intron (FBgn0263749, intron 1 of 4) -2506 FBgn0086053 FBgn0086053 FBtr0114329 snoRNA:Me18S-G1358a snoRNA CG8478-S2-modencode_R2_peak_2755 chrX 3581922 3582068 + 15 NA promoter-TSS (FBgn0023215) protein_coding-promoter-TSS (FBgn0023215) -1403 FBgn0023215 FBgn0023215 FBtr0301825 Mnt protein_coding CG8478-S2-modencode_R2_peak_2308 chr3R 19186033 19186329 + 15 NA TTS (FBgn0002622) protein_coding-TTS (FBgn0002622) 1647 FBgn0002622 FBgn0002622 FBtr0084410 RpS3 protein_coding CG8478-S2-modencode_R2_peak_2223 chr3R 16655670 16655829 + 15 NA intron (FBgn0027493, intron 1 of 5) protein_coding-intron (FBgn0027493, intron 1 of 4) 588 FBgn0027493 FBgn0027493 FBtr0310504 CG17273 protein_coding CG8478-S2-modencode_R2_peak_3153 chrX 14719944 14720339 + 15 NA promoter-TSS (FBgn0003301) protein_coding-promoter-TSS (FBgn0003301) -203 FBgn0003301 FBgn0003301 FBtr0333655 rut protein_coding CG8478-S2-modencode_R2_peak_2181 chr3R 14282257 14282401 + 15 NA intron (FBgn0004652, intron 2 of 7) protein_coding-intron (FBgn0004652, intron 2 of 7) -44976 FBgn0038621 FBgn0038621 FBtr0083654 CG10864 protein_coding CG8478-S2-modencode_R2_peak_1627 chr3L 17044187 17044260 + 15 NA promoter-TSS (FBgn0036697) protein_coding-promoter-TSS (FBgn0036697) -154 FBgn0036697 FBgn0036697 FBtr0075283 rogdi protein_coding CG8478-S2-modencode_R2_peak_358 chr2L 17428058 17428276 + 15 NA promoter-TSS (FBgn0011274) protein_coding-promoter-TSS (FBgn0011274) 4994 FBgn0011274 FBgn0011274 FBtr0301577 Dif protein_coding CG8478-S2-modencode_R2_peak_2734 chrX 3271492 3271827 + 15 NA intron (FBgn0262656, intron 2 of 2) protein_coding-intron (FBgn0262656, intron 2 of 2) 4467 FBgn0262656 FBgn0262656 FBtr0070525 dm protein_coding CG8478-S2-modencode_R2_peak_2350 chr3R 20593649 20593937 + 15 NA Intergenic Intergenic -1283 FBgn0040600 FBgn0040600 FBtr0084693 CG13631 protein_coding CG8478-S2-modencode_R2_peak_524 chr2R 3474949 3475072 + 15 NA promoter-TSS (FBgn0004133) protein_coding-promoter-TSS (FBgn0004133) -429 FBgn0004133 FBgn0004133 FBtr0310050 blow protein_coding CG8478-S2-modencode_R2_peak_1842 chr3R 2895331 2895559 + 15 NA exon (FBgn0037466, exon 5 of 9) protein_coding-exon (FBgn0037466, exon 5 of 9) 2291 FBgn0037466 FBgn0037466 FBtr0305315 CG1965 protein_coding CG8478-S2-modencode_R2_peak_3211 chrX 16453685 16453779 + 15 NA TTS (FBgn0030758) protein_coding-TTS (FBgn0030758) 324 FBgn0011826 FBgn0011826 FBtr0074294 Pp2B-14D protein_coding CG8478-S2-modencode_R2_peak_1904 chr3R 5054739 5055408 + 15 NA intron (FBgn0003165, intron 3 of 12) protein_coding-intron (FBgn0003165, intron 3 of 12) 10916 FBgn0000412 FBgn0000412 FBtr0301524 D1 protein_coding CG8478-S2-modencode_R2_peak_2786 chrX 3774935 3775190 + 15 NA TTS (FBgn0028491) protein_coding-TTS (FBgn0028491) 285 FBgn0028665 FBgn0028665 FBtr0070611 VhaAC39-1 protein_coding CG8478-S2-modencode_R2_peak_2870 chrX 7200503 7200721 + 15 NA intron (FBgn0029941, intron 2 of 6) protein_coding-intron (FBgn0029941, intron 2 of 6) -1362 FBgn0024250 FBgn0024250 FBtr0071048 brk protein_coding CG8478-S2-modencode_R2_peak_2646 chrX 1168322 1168487 + 15 NA intron (FBgn0028550, intron 1 of 5) protein_coding-intron (FBgn0028550, intron 1 of 5) 278 FBgn0028550 FBgn0028550 FBtr0330391 Atf3 protein_coding CG8478-S2-modencode_R2_peak_1763 chr3L 22734431 22734589 + 15 NA promoter-TSS (FBgn0037188) protein_coding-promoter-TSS (FBgn0037188) -22 FBgn0010830 FBgn0010830 FBtr0078535 l(3)04053 protein_coding CG8478-S2-modencode_R2_peak_1806 chr3R 1193235 1193596 + 15 NA intron (FBgn0037315, intron 1 of 3) protein_coding-intron (FBgn0037315, intron 1 of 3) -1847 FBgn0051542 FBgn0051542 FBtr0078786 CG31542 protein_coding CG8478-S2-modencode_R2_peak_84 chr2L 3301846 3302264 + 15 NA intron (FBgn0031516, intron 1 of 7) protein_coding-intron (FBgn0031516, intron 1 of 7) 1074 FBgn0031516 FBgn0031516 FBtr0077604 CG9663 protein_coding CG8478-S2-modencode_R2_peak_3031 chrX 10436424 10436675 + 15 NA intron (FBgn0085443, intron 3 of 10) protein_coding-intron (FBgn0085443, intron 3 of 9) 24075 FBgn0030215 FBgn0030215 FBtr0310297 CG15296 protein_coding CG8478-S2-modencode_R2_peak_3247 chrX 18548305 18548779 + 15 NA intron (FBgn0030946, intron 4 of 5) protein_coding-intron (FBgn0030946, intron 5 of 6) -1418 FBgn0030945 FBgn0030945 FBtr0074614 Ing3 protein_coding CG8478-S2-modencode_R2_peak_3132 chrX 13196963 13197118 + 15 NA Intergenic Intergenic -2512 FBgn0030469 FBgn0030469 FBtr0073759 CG15745 protein_coding CG8478-S2-modencode_R2_peak_283 chr2L 12520341 12520602 + 15 NA intron (FBgn0259176, intron 5 of 7) protein_coding-intron (FBgn0259176, intron 5 of 7) 12363 FBgn0263458 FBgn0263458 FBtr0309757 snoRNA:CG43051-a snoRNA CG8478-S2-modencode_R2_peak_1921 chr3R 5217860 5218009 + 15 NA intron (FBgn0000723, intron 2 of 13) protein_coding-intron (FBgn0000723, intron 2 of 12) 2334 FBgn0000723 FBgn0000723 FBtr0082054 Fps85D protein_coding CG8478-S2-modencode_R2_peak_2825 chrX 5584501 5584760 + 15 NA exon (FBgn0000394, exon 2 of 5) protein_coding-exon (FBgn0000394, exon 2 of 5) 601 FBgn0000394 FBgn0000394 FBtr0070804 cv protein_coding CG8478-S2-modencode_R2_peak_2694 chrX 2189964 2190136 + 15 NA intron (FBgn0003079, intron 1 of 5) protein_coding-intron (FBgn0003079, intron 1 of 5) 133 FBgn0003079 FBgn0003079 FBtr0111025 phl protein_coding CG8478-S2-modencode_R2_peak_740 chr2R 7502520 7502834 + 15 NA intron (FBgn0033636, intron 1 of 16) protein_coding-intron (FBgn0033636, intron 1 of 16) -1023 FBgn0264508 FBgn0264508 FBtr0333069 CR43907 ncRNA CG8478-S2-modencode_R2_peak_2400 chr3R 22054814 22055564 + 15 NA promoter-TSS (FBgn0039419) protein_coding-promoter-TSS (FBgn0039419) -785 FBgn0039419 FBgn0039419 FBtr0084990 CG12290 protein_coding CG8478-S2-modencode_R2_peak_286 chr2L 12521951 12522177 + 15 NA intron (FBgn0259176, intron 5 of 7) protein_coding-intron (FBgn0259176, intron 5 of 7) 13956 FBgn0263458 FBgn0263458 FBtr0309757 snoRNA:CG43051-a snoRNA CG8478-S2-modencode_R2_peak_386 chr2L 19140812 19140956 + 15 NA intron (FBgn0010300, intron 1 of 4) protein_coding-intron (FBgn0010300, intron 1 of 3) -5651 FBgn0086447 FBgn0086447 FBtr0081161 l(2)37Cg protein_coding CG8478-S2-modencode_R2_peak_557 chr2R 3949462 3949563 + 15 NA intron (FBgn0033252, intron 1 of 4) protein_coding-intron (FBgn0033252, intron 1 of 4) -3456 FBgn0033252 FBgn0033252 FBtr0088828 CG12769 protein_coding CG8478-S2-modencode_R2_peak_93 chr2L 3657277 3657654 + 15 NA promoter-TSS (FBgn0000721) protein_coding-promoter-TSS (FBgn0000721) -5280 FBgn0085369 FBgn0085369 FBtr0302391 CG34340 protein_coding CG8478-S2-modencode_R2_peak_2967 chrX 9535063 9535427 + 15 NA promoter-TSS (FBgn0028341) protein_coding-promoter-TSS (FBgn0028341) -588 FBgn0028341 FBgn0028341 FBtr0303559 l(1)G0232 protein_coding CG8478-S2-modencode_R2_peak_2213 chr3R 16143218 16143418 + 15 NA promoter-TSS (FBgn0261550) protein_coding-promoter-TSS (FBgn0261550) -1239 FBgn0261550 FBgn0261550 FBtr0302666 CG42668 protein_coding CG8478-S2-modencode_R2_peak_3126 chrX 12983863 12984288 + 15 NA exon (FBgn0010303, exon 1 of 10) protein_coding-exon (FBgn0010303, exon 1 of 10) 391 FBgn0010303 FBgn0010303 FBtr0073748 hep protein_coding CG8478-S2-modencode_R2_peak_2169 chr3R 13994784 13995137 + 15 NA exon (FBgn0042693, exon 1 of 8) protein_coding-exon (FBgn0042693, exon 1 of 8) 797 FBgn0042693 FBgn0042693 FBtr0083555 PP2A-B' protein_coding CG8478-S2-modencode_R2_peak_1707 chr3L 19056024 19056223 + 15 NA promoter-TSS (FBgn0036843) protein_coding-promoter-TSS (FBgn0036843) -142 FBgn0036843 FBgn0036843 FBtr0075025 CG6812 protein_coding CG8478-S2-modencode_R2_peak_2879 chrX 7527696 7528200 + 15 NA intron (FBgn0004198, intron 2 of 7) protein_coding-intron (FBgn0004198, intron 1 of 6) 24767 FBgn0004198 FBgn0004198 FBtr0071069 ct protein_coding CG8478-S2-modencode_R2_peak_1099 chr2R 17394202 17394541 + 15 NA intron (FBgn0043070, intron 1 of 7) protein_coding-intron (FBgn0043070, intron 1 of 6) 4769 FBgn0043070 FBgn0043070 FBtr0089706 MESK2 protein_coding CG8478-S2-modencode_R2_peak_2275 chr3R 18982663 18983230 + 15 NA TTS (FBgn0039058) protein_coding-TTS (FBgn0039058) 646 FBgn0004395 FBgn0004395 FBtr0084403 unk protein_coding CG8478-S2-modencode_R2_peak_140 chr2L 6338958 6339612 + 15 NA promoter-TSS (FBgn0031799) protein_coding-promoter-TSS (FBgn0031799) -540 FBgn0015623 FBgn0015623 FBtr0079251 Cpr protein_coding CG8478-S2-modencode_R2_peak_1810 chr3R 1498587 1498733 + 15 NA intron (FBgn0037363, intron 1 of 4) protein_coding-intron (FBgn0037363, intron 1 of 4) 3225 FBgn0037363 FBgn0037363 FBtr0078716 CG1347 protein_coding CG8478-S2-modencode_R2_peak_894 chr2R 12468967 12469179 + 15 NA intron (FBgn0016131, intron 2 of 6) protein_coding-intron (FBgn0016131, intron 2 of 6) 1444 FBgn0016131 FBgn0016131 FBtr0087104 Cdk4 protein_coding CG8478-S2-modencode_R2_peak_490 chr2R 2211887 2212019 + 15 NA Intergenic Intergenic 78912 FBgn0033075 FBgn0033075 FBtr0114492 Pld protein_coding CG8478-S2-modencode_R2_peak_806 chr2R 9846448 9846654 + 15 NA promoter-TSS (FBgn0262739) protein_coding-promoter-TSS (FBgn0262739) -957 FBgn0262739 FBgn0262739 FBtr0087613 AGO1 protein_coding CG8478-S2-modencode_R2_peak_2623 chrUextra 10241472 10241652 + 15 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1355 chr3L 5165485 5165666 + 15 NA intron (FBgn0052423, intron 3 of 11) protein_coding-intron (FBgn0052423, intron 3 of 10) 12322 FBgn0052423 FBgn0052423 FBtr0301599 shep protein_coding CG8478-S2-modencode_R2_peak_489 chr2R 2154121 2154286 + 15 NA Intergenic Intergenic 21162 FBgn0033075 FBgn0033075 FBtr0114492 Pld protein_coding CG8478-S2-modencode_R2_peak_391 chr2L 19361681 19362151 + 15 NA intron (FBgn0024245, intron 1 of 3) protein_coding-intron (FBgn0024245, intron 1 of 3) 1308 FBgn0024245 FBgn0024245 FBtr0081224 dnt protein_coding CG8478-S2-modencode_R2_peak_379 chr2L 18839501 18839753 + 15 NA promoter-TSS (FBgn0032717) protein_coding-promoter-TSS (FBgn0032717) 52 FBgn0032717 FBgn0032717 FBtr0081120 CG10600 protein_coding CG8478-S2-modencode_R2_peak_1450 chr3L 9403323 9403764 + 15 NA promoter-TSS (FBgn0035987) protein_coding-promoter-TSS (FBgn0035987) 389 FBgn0035986 FBgn0035986 FBtr0076486 CG4022 protein_coding CG8478-S2-modencode_R2_peak_2678 chrX 1982803 1983008 + 15 NA promoter-TSS (FBgn0040395) protein_coding-promoter-TSS (FBgn0040395) -464 FBgn0040395 FBgn0040395 FBtr0333755 Unc-76 protein_coding CG8478-S2-modencode_R2_peak_444 chr2R 148417 148669 + 15 NA Intergenic Intergenic -18099 FBgn0262117 FBgn0262117 FBtr0111269 IntS3 protein_coding CG8478-S2-modencode_R2_peak_2234 chr3R 16921266 16921396 + 15 NA intron (FBgn0038853, intron 2 of 13) protein_coding-intron (FBgn0038853, intron 2 of 13) 2196 FBgn0038853 FBgn0038853 FBtr0084036 RhoGAP93B protein_coding CG8478-S2-modencode_R2_peak_2089 chr3R 11660894 11661016 + 15 NA promoter-TSS (FBgn0263022) protein_coding-promoter-TSS (FBgn0263022) 565 FBgn0038369 FBgn0038369 FBtr0300571 Arpc3A protein_coding CG8478-S2-modencode_R2_peak_3309 chrX 21238899 21239027 + 15 NA promoter-TSS (FBgn0024251) protein_coding-promoter-TSS (FBgn0024251) -678 FBgn0024251 FBgn0024251 FBtr0331744 bbx protein_coding CG8478-S2-modencode_R2_peak_1895 chr3R 4839505 4839600 + 15 NA promoter-TSS (FBgn0037655) protein_coding-promoter-TSS (FBgn0037655) 202 FBgn0037655 FBgn0037655 FBtr0300745 CG11984 protein_coding CG8478-S2-modencode_R2_peak_1251 chr3L 1578587 1578704 + 15 NA intron (FBgn0035237, intron 1 of 4) protein_coding-intron (FBgn0035237, intron 1 of 4) 1946 FBgn0035237 FBgn0035237 FBtr0303993 CG13917 protein_coding CG8478-S2-modencode_R2_peak_2113 chr3R 12050525 12050637 + 15 NA promoter-TSS (FBgn0040071) protein_coding-promoter-TSS (FBgn0040071) -17960 FBgn0040071 FBgn0040071 FBtr0083258 tara protein_coding CG8478-S2-modencode_R2_peak_1364 chr3L 5346884 5346989 + 15 NA intron (FBgn0016031, intron 1 of 5) protein_coding-intron (FBgn0016031, intron 1 of 4) 1510 FBgn0016031 FBgn0016031 FBtr0077161 lama protein_coding CG8478-S2-modencode_R2_peak_2353 chr3R 20740637 20740985 + 15 NA promoter-TSS (FBgn0051416) tRNA-promoter-TSS (FBgn0051416) 42 FBgn0051416 FBgn0051416 FBtr0084721 tRNA:CR31416 tRNA CG8478-S2-modencode_R2_peak_56 chr2L 1890471 1890589 + 15 NA intron (FBgn0031374, intron 1 of 17) protein_coding-intron (FBgn0031374, intron 1 of 18) 5908 FBgn0031374 FBgn0031374 FBtr0110882 CG7337 protein_coding CG8478-S2-modencode_R2_peak_898 chr2R 12547900 12548337 + 15 NA intron (FBgn0024315, intron 2 of 5) protein_coding-intron (FBgn0024315, intron 2 of 5) -1460 FBgn0024315 FBgn0024315 FBtr0087115 Picot protein_coding CG8478-S2-modencode_R2_peak_1308 chr3L 3430614 3430824 + 15 NA intron (FBgn0026259, intron 8 of 8) protein_coding-intron (FBgn0026259, intron 8 of 8) -12792 FBgn0014388 FBgn0014388 FBtr0073146 sty protein_coding CG8478-S2-modencode_R2_peak_2322 chr3R 19842207 19842513 + 15 NA intron (FBgn0020647, intron 2 of 10) protein_coding-intron (FBgn0020647, intron 2 of 11) -10610 FBgn0020647 FBgn0020647 FBtr0301419 KrT95D protein_coding CG8478-S2-modencode_R2_peak_1175 chr2R 20427643 20427915 + 15 NA exon (FBgn0035023, exon 1 of 3) protein_coding-exon (FBgn0035023, exon 1 of 3) -3438 FBgn0035023 FBgn0035023 FBtr0300187 itp protein_coding CG8478-S2-modencode_R2_peak_613 chr2R 5968264 5968396 + 15 NA promoter-TSS (FBgn0263201) snoRNA-promoter-TSS (FBgn0263201) 37 FBgn0263201 FBgn0263201 FBtr0309751 scaRNA:46E3 snoRNA CG8478-S2-modencode_R2_peak_465 chr2R 1909008 1909078 + 15 NA exon (FBgn0033051, exon 2 of 3) protein_coding-exon (FBgn0033051, exon 2 of 3) 1668 FBgn0033051 FBgn0033051 FBtr0086028 dream protein_coding CG8478-S2-modencode_R2_peak_2086 chr3R 11503846 11504053 + 15 NA intron (FBgn0053207, intron 2 of 4) protein_coding-intron (FBgn0053207, intron 2 of 4) 10249 FBgn0264431 FBgn0264431 FBtr0332551 CR43849 ncRNA CG8478-S2-modencode_R2_peak_1807 chr3R 1343273 1343390 + 15 NA exon (FBgn0010051, exon 1 of 19) protein_coding-exon (FBgn0010051, exon 1 of 19) 5453 FBgn0264427 FBgn0264427 FBtr0332547 CR43845 ncRNA CG8478-S2-modencode_R2_peak_2263 chr3R 17681333 17681403 + 15 NA exon (FBgn0015229, exon 1 of 2) protein_coding-exon (FBgn0015229, exon 1 of 2) 616 FBgn0015229 FBgn0015229 FBtr0084157 glec protein_coding CG8478-S2-modencode_R2_peak_3148 chrX 13884685 13884816 + 15 NA Intergenic Intergenic -4863 FBgn0263115 FBgn0263115 FBtr0112554 mamo protein_coding CG8478-S2-modencode_R2_peak_1458 chr3L 9684524 9684677 + 15 NA intron (FBgn0036030, intron 2 of 7) protein_coding-intron (FBgn0036030, intron 2 of 6) 5200 FBgn0036030 FBgn0036030 FBtr0333856 CG6767 protein_coding CG8478-S2-modencode_R2_peak_1606 chr3L 16596767 16596875 + 15 NA intron (FBgn0042177, intron 1 of 7) protein_coding-intron (FBgn0042177, intron 1 of 7) 668 FBgn0042177 FBgn0042177 FBtr0331559 CG32164 protein_coding CG8478-S2-modencode_R2_peak_2833 chrX 5793996 5794152 + 15 NA promoter-TSS (FBgn0000042) protein_coding-promoter-TSS (FBgn0000042) -820 FBgn0000042 FBgn0000042 FBtr0070823 Act5C protein_coding CG8478-S2-modencode_R2_peak_3131 chrX 13178685 13178910 + 15 NA intron (FBgn0041210, intron 1 of 12) protein_coding-intron (FBgn0041210, intron 1 of 13) 557 FBgn0041210 FBgn0041210 FBtr0073798 HDAC4 protein_coding CG8478-S2-modencode_R2_peak_2389 chr3R 21931457 21931670 + 15 NA Intergenic Intergenic -7130 FBgn0039411 FBgn0039411 FBtr0113293 dys protein_coding CG8478-S2-modencode_R2_peak_1051 chr2R 15348721 15349289 + 15 NA intron (FBgn0260934, intron 2 of 15) protein_coding-intron (FBgn0260934, intron 2 of 15) 5305 FBgn0002716 FBgn0002716 FBtr0086461 mei-W68 protein_coding CG8478-S2-modencode_R2_peak_2938 chrX 9360507 9360965 + 15 NA intron (FBgn0261260, intron 2 of 2) protein_coding-intron (FBgn0261260, intron 2 of 14) 29485 FBgn0261260 FBgn0261260 FBtr0302154 mgl protein_coding CG8478-S2-modencode_R2_peak_1864 chr3R 3934534 3934809 + 15 NA intron (FBgn0243512, intron 2 of 3) protein_coding-intron (FBgn0243512, intron 2 of 3) 3614 FBgn0243512 FBgn0243512 FBtr0081792 puc protein_coding CG8478-S2-modencode_R2_peak_2886 chrX 7598417 7600147 + 15 NA promoter-TSS (FBgn0029504) protein_coding-promoter-TSS (FBgn0029504) -2526 FBgn0262979 FBgn0262979 FBtr0306815 CG43287 protein_coding CG8478-S2-modencode_R2_peak_2207 chr3R 15690041 15690202 + 15 NA promoter-TSS (FBgn0038739) protein_coding-promoter-TSS (FBgn0038739) 21 FBgn0038738 FBgn0038738 FBtr0083861 CG4572 protein_coding CG8478-S2-modencode_R2_peak_2083 chr3R 11476659 11477055 + 15 NA Intergenic Intergenic 13967 FBgn0263041 FBgn0263041 FBtr0306930 CG43336 protein_coding CG8478-S2-modencode_R2_peak_1555 chr3L 14054290 14054547 + 15 NA intron (FBgn0052138, intron 1 of 9) protein_coding-intron (FBgn0052138, intron 1 of 8) 7622 FBgn0052138 FBgn0052138 FBtr0334053 CG32138 protein_coding CG8478-S2-modencode_R2_peak_1744 chr3L 21195991 21196260 + 15 NA promoter-TSS (FBgn0053056) protein_coding-promoter-TSS (FBgn0053056) -143 FBgn0053054 FBgn0053054 FBtr0078316 CG33054 protein_coding CG8478-S2-modencode_R2_peak_2849 chrX 6496308 6496379 + 15 NA promoter-TSS (FBgn0029881) protein_coding-promoter-TSS (FBgn0029881) -15 FBgn0029881 FBgn0029881 FBtr0308653 pigs protein_coding CG8478-S2-modencode_R2_peak_2105 chr3R 12028472 12028606 + 15 NA promoter-TSS (FBgn0051287) protein_coding-promoter-TSS (FBgn0051287) 263 FBgn0038407 FBgn0038407 FBtr0083278 CG6126 protein_coding CG8478-S2-modencode_R2_peak_2047 chr3R 10114564 10114700 + 15 NA promoter-TSS (FBgn0038220) protein_coding-promoter-TSS (FBgn0038220) -364 FBgn0038220 FBgn0038220 FBtr0309998 CG12207 protein_coding CG8478-S2-modencode_R2_peak_2985 chrX 9747285 9747373 + 15 NA Intergenic Intergenic -11922 FBgn0019929 FBgn0019929 FBtr0071387 Ser7 protein_coding CG8478-S2-modencode_R2_peak_2659 chrX 1472168 1472434 + 15 NA intron (FBgn0000210, intron 1 of 7) protein_coding-intron (FBgn0025390, intron 3 of 7) -19868 FBgn0065095 FBgn0065095 FBtr0091687 snmRNA:400 ncRNA CG8478-S2-modencode_R2_peak_1954 chr3R 5911708 5912264 + 15 NA Intergenic Intergenic -4917 FBgn0262378 FBgn0262378 FBtr0304218 mir-317 pre_miRNA CG8478-S2-modencode_R2_peak_1213 chr3L 614624 614712 + 15 NA TTS (FBgn0261636) protein_coding-TTS (FBgn0261636) 1978 FBgn0261636 FBgn0261636 FBtr0303002 CG42719 protein_coding CG8478-S2-modencode_R2_peak_1351 chr3L 4544388 4544564 + 15 NA intron (FBgn0035558, intron 2 of 3) protein_coding-intron (FBgn0035558, intron 2 of 3) 2425 FBgn0035558 FBgn0035558 FBtr0113142 CG11357 protein_coding CG8478-S2-modencode_R2_peak_2245 chr3R 17234257 17234497 + 15 NA promoter-TSS (FBgn0051438) protein_coding-promoter-TSS (FBgn0051438) -468 FBgn0051438 FBgn0051438 FBtr0084090 CheB93b protein_coding CG8478-S2-modencode_R2_peak_2103 chr3R 11924024 11924098 + 15 NA promoter-TSS (FBgn0010379) protein_coding-promoter-TSS (FBgn0010379) -877 FBgn0010379 FBgn0010379 FBtr0083228 Akt1 protein_coding CG8478-S2-modencode_R2_peak_2807 chrX 4601372 4601644 + 15 NA promoter-TSS (FBgn0029723) protein_coding-promoter-TSS (FBgn0029723) -443 FBgn0029723 FBgn0029723 FBtr0100552 Proc-R protein_coding CG8478-S2-modencode_R2_peak_762 chr2R 8512891 8513141 + 15 NA promoter-TSS (FBgn0033756) protein_coding-promoter-TSS (FBgn0033756) -297 FBgn0033756 FBgn0033756 FBtr0110824 CG17760 protein_coding CG8478-S2-modencode_R2_peak_585 chr2R 5328233 5328960 + 15 NA promoter-TSS (FBgn0029092) protein_coding-promoter-TSS (FBgn0029092) 470 FBgn0029092 FBgn0029092 FBtr0088550 ced-6 protein_coding CG8478-S2-modencode_R2_peak_732 chr2R 7481716 7481904 + 15 NA intron (FBgn0033636, intron 1 of 16) protein_coding-intron (FBgn0033636, intron 1 of 16) -2820 FBgn0086658 FBgn0086658 FBtr0091640 snoRNA:Psi28S-1180 snoRNA CG8478-S2-modencode_R2_peak_870 chr2R 11888434 11888676 + 15 NA promoter-TSS (FBgn0034060) protein_coding-promoter-TSS (FBgn0034060) -73 FBgn0034060 FBgn0034060 FBtr0087203 CG8370 protein_coding CG8478-S2-modencode_R2_peak_1428 chr3L 8672583 8672654 + 15 NA TTS (FBgn0001168) protein_coding-TTS (FBgn0001168) 3759 FBgn0001168 FBgn0001168 FBtr0076569 h protein_coding CG8478-S2-modencode_R2_peak_494 chr2R 2440564 2440798 + 15 NA intron (FBgn0086655, intron 1 of 6) protein_coding-intron (FBgn0086655, intron 1 of 6) -19581 FBgn0264506 FBgn0264506 FBtr0332951 CR43905 ncRNA CG8478-S2-modencode_R2_peak_1912 chr3R 5168273 5168410 + 15 NA exon (FBgn0263749, exon 2 of 6) protein_coding-exon (FBgn0263749, exon 2 of 6) 746 FBgn0263749 FBgn0263749 FBtr0310401 CG43674 protein_coding CG8478-S2-modencode_R2_peak_1121 chr2R 18021483 18021596 + 15 NA Intergenic Intergenic -2824 FBgn0085234 FBgn0085234 FBtr0112398 CG34205 protein_coding CG8478-S2-modencode_R2_peak_812 chr2R 9879270 9879462 + 15 NA intron (FBgn0002643, intron 1 of 6) protein_coding-intron (FBgn0002643, intron 1 of 6) -1151 FBgn0020620 FBgn0020620 FBtr0087604 RN-tre protein_coding CG8478-S2-modencode_R2_peak_1403 chr3L 7858376 7858754 + 15 NA intron (FBgn0016694, intron 1 of 5) protein_coding-intron (FBgn0016694, intron 1 of 4) 1904 FBgn0016694 FBgn0016694 FBtr0332080 Pdp1 protein_coding CG8478-S2-modencode_R2_peak_1584 chr3L 15526428 15526577 + 15 NA Intergenic Intergenic -1929 FBgn0262893 FBgn0262893 FBtr0306309 CG43248 protein_coding CG8478-S2-modencode_R2_peak_1136 chr2R 18449153 18449396 + 15 NA promoter-TSS (FBgn0034737) protein_coding-promoter-TSS (FBgn0034737) 296 FBgn0003175 FBgn0003175 FBtr0112821 px protein_coding CG8478-S2-modencode_R2_peak_2714 chrX 2546739 2546884 + 15 NA intron (FBgn0003371, intron 4 of 11) protein_coding-intron (FBgn0003371, intron 2 of 9) 9761 FBgn0003371 FBgn0003371 FBtr0112828 sgg protein_coding CG8478-S2-modencode_R2_peak_840 chr2R 10735680 10735937 + 15 NA promoter-TSS (FBgn0033971) protein_coding-promoter-TSS (FBgn0033971) 70 FBgn0033971 FBgn0033971 FBtr0329883 CG10209 protein_coding CG8478-S2-modencode_R2_peak_298 chr2L 12974097 12974356 + 15 NA promoter-TSS (FBgn0263598) protein_coding-promoter-TSS (FBgn0263598) -968 FBgn0263598 FBgn0263598 FBtr0305551 Vha68-2 protein_coding CG8478-S2-modencode_R2_peak_242 chr2L 9568210 9568754 + 15 NA promoter-TSS (FBgn0032130) protein_coding-promoter-TSS (FBgn0032130) -1835 FBgn0032130 FBgn0032130 FBtr0079835 CG3838 protein_coding CG8478-S2-modencode_R2_peak_3254 chrX 19040677 19041114 + 14 NA promoter-TSS (FBgn0261461) protein_coding-promoter-TSS (FBgn0261461) -118 FBgn0261461 FBgn0261461 FBtr0299625 RhoGAP18B protein_coding CG8478-S2-modencode_R2_peak_182 chr2L 8127604 8127697 + 14 NA promoter-TSS (FBgn0031987) protein_coding-promoter-TSS (FBgn0031987) 626 FBgn0031988 FBgn0031988 FBtr0079576 CG8668 protein_coding CG8478-S2-modencode_R2_peak_14 chr2L 249150 249384 + 14 NA intron (FBgn0086902, intron 1 of 16) protein_coding-intron (FBgn0086902, intron 1 of 17) 1556 FBgn0086902 FBgn0086902 FBtr0078145 kis protein_coding CG8478-S2-modencode_R2_peak_1922 chr3R 5219955 5220412 + 14 NA promoter-TSS (FBgn0000723) protein_coding-promoter-TSS (FBgn0000723) 85 FBgn0000723 FBgn0000723 FBtr0082054 Fps85D protein_coding CG8478-S2-modencode_R2_peak_3001 chrX 10213514 10213658 + 14 NA intron (FBgn0259170, intron 2 of 6) protein_coding-intron (FBgn0259170, intron 2 of 6) -6911 FBgn0030189 FBgn0030189 FBtr0071441 CG2909 protein_coding CG8478-S2-modencode_R2_peak_1636 chr3L 17559636 17559921 + 14 NA promoter-TSS (FBgn0086080) snoRNA-promoter-TSS (FBgn0086080) -516 FBgn0086080 FBgn0086080 FBtr0114356 snoRNA:Me28S-A576 snoRNA CG8478-S2-modencode_R2_peak_183 chr2L 8129438 8129565 + 14 NA intron (FBgn0031988, intron 1 of 3) protein_coding-intron (FBgn0031988, intron 1 of 3) 2477 FBgn0031988 FBgn0031988 FBtr0079576 CG8668 protein_coding CG8478-S2-modencode_R2_peak_1236 chr3L 774395 774829 + 14 NA Intergenic Intergenic 4249 FBgn0052481 FBgn0052481 FBtr0072580 tRNA:CR32481 tRNA CG8478-S2-modencode_R2_peak_1319 chr3L 3455866 3456178 + 14 NA intron (FBgn0026259, intron 4 of 8) protein_coding-intron (FBgn0026259, intron 4 of 8) 4955 FBgn0026259 FBgn0026259 FBtr0073144 eIF5B protein_coding CG8478-S2-modencode_R2_peak_2970 chrX 9544433 9544804 + 14 NA promoter-TSS (FBgn0028341) protein_coding-promoter-TSS (FBgn0028341) -9961 FBgn0028341 FBgn0028341 FBtr0303559 l(1)G0232 protein_coding CG8478-S2-modencode_R2_peak_1973 chr3R 6217642 6217980 + 14 NA intron (FBgn0259938, intron 1 of 2) protein_coding-intron (FBgn0259938, intron 1 of 3) 3826 FBgn0259938 FBgn0259938 FBtr0305152 cwo protein_coding CG8478-S2-modencode_R2_peak_791 chr2R 9302920 9303032 + 14 NA promoter-TSS (FBgn0260475) protein_coding-promoter-TSS (FBgn0260475) -857 FBgn0260475 FBgn0260475 FBtr0087715 CG30059 protein_coding CG8478-S2-modencode_R2_peak_2930 chrX 9149166 9149253 + 14 NA TTS (FBgn0030114) protein_coding-TTS (FBgn0030114) -1001 FBgn0028292 FBgn0028292 FBtr0071317 ric8a protein_coding CG8478-S2-modencode_R2_peak_1686 chr3L 18750123 18750378 + 14 NA intron (FBgn0001078, intron 1 of 7) protein_coding-intron (FBgn0001078, intron 3 of 9) 8463 FBgn0036813 FBgn0036813 FBtr0075055 Aut1 protein_coding CG8478-S2-modencode_R2_peak_956 chr2R 14179223 14179359 + 14 NA promoter-TSS (FBgn0034321) protein_coding-promoter-TSS (FBgn0034321) 2698 FBgn0034321 FBgn0034321 FBtr0086757 CG14502 protein_coding CG8478-S2-modencode_R2_peak_2380 chr3R 21845258 21845388 + 14 NA promoter-TSS (FBgn0263652) ncRNA-promoter-TSS (FBgn0263652) -292 FBgn0263652 FBgn0263652 FBtr0310085 CR43643 ncRNA CG8478-S2-modencode_R2_peak_3040 chrX 10677817 10679416 + 14 NA promoter-TSS (FBgn0003360) protein_coding-promoter-TSS (FBgn0003360) -125 FBgn0003360 FBgn0003360 FBtr0073423 sesB protein_coding CG8478-S2-modencode_R2_peak_332 chr2L 15911579 15912002 + 14 NA intron (FBgn0028645, intron 2 of 6) protein_coding-intron (FBgn0028645, intron 2 of 6) -5098 FBgn0032577 FBgn0032577 FBtr0080792 CG13244 protein_coding CG8478-S2-modencode_R2_peak_2096 chr3R 11847847 11848155 + 14 NA Intergenic Intergenic -12111 FBgn0003117 FBgn0003117 FBtr0083221 pnr protein_coding CG8478-S2-modencode_R2_peak_953 chr2R 14175570 14175937 + 14 NA promoter-TSS (FBgn0034321) protein_coding-promoter-TSS (FBgn0034321) -840 FBgn0034321 FBgn0034321 FBtr0086757 CG14502 protein_coding CG8478-S2-modencode_R2_peak_1141 chr2R 18568364 18568505 + 14 NA Intergenic Intergenic 8044 FBgn0020257 FBgn0020257 FBtr0330249 ppa protein_coding CG8478-S2-modencode_R2_peak_1574 chr3L 15092162 15092311 + 14 NA TTS (FBgn0264703) ncRNA-TTS (FBgn0264703) 366 FBgn0264704 FBgn0264704 FBtr0333938 CR43973 ncRNA CG8478-S2-modencode_R2_peak_1005 chr2R 14687163 14687455 + 14 NA intron (FBgn0010651, intron 1 of 3) protein_coding-intron (FBgn0010651, intron 2 of 4) 2595 FBgn0010651 FBgn0010651 FBtr0086635 l(2)08717 protein_coding CG8478-S2-modencode_R2_peak_1224 chr3L 644558 644724 + 14 NA TTS (FBgn0263039) ncRNA-TTS (FBgn0263039) 2382 FBgn0262451 FBgn0262451 FBtr0304469 ban pre_miRNA CG8478-S2-modencode_R2_peak_667 chr2R 6753984 6754277 + 14 NA intron (FBgn0050015, intron 1 of 7) protein_coding-intron (FBgn0050015, intron 1 of 7) 8767 FBgn0050016 FBgn0050016 FBtr0088241 CG30016 protein_coding CG8478-S2-modencode_R2_peak_2261 chr3R 17677525 17677866 + 14 NA intron (FBgn0015229, intron 1 of 1) protein_coding-intron (FBgn0015229, intron 1 of 1) 4289 FBgn0015229 FBgn0015229 FBtr0084157 glec protein_coding CG8478-S2-modencode_R2_peak_666 chr2R 6713665 6713791 + 14 NA exon (FBgn0033557, exon 7 of 10) protein_coding-exon (FBgn0033557, exon 7 of 10) 2623 FBgn0033557 FBgn0033557 FBtr0088227 CG12325 protein_coding CG8478-S2-modencode_R2_peak_2893 chrX 7817315 7817451 + 14 NA exon (FBgn0029979, exon 4 of 4) protein_coding-exon (FBgn0029979, exon 4 of 4) 2941 FBgn0260858 FBgn0260858 FBtr0071093 Ykt6 protein_coding CG8478-S2-modencode_R2_peak_2092 chr3R 11819614 11820199 + 14 NA promoter-TSS (FBgn0003507) protein_coding-promoter-TSS (FBgn0003507) 7983 FBgn0003507 FBgn0003507 FBtr0083216 srp protein_coding CG8478-S2-modencode_R2_peak_2489 chr3R 26141240 26141529 + 14 NA intron (FBgn0010113, intron 2 of 5) protein_coding-intron (FBgn0010113, intron 2 of 5) -9025 FBgn0085329 FBgn0085329 FBtr0305269 CG34300 protein_coding CG8478-S2-modencode_R2_peak_2239 chr3R 17012470 17012580 + 14 NA intron (FBgn0264357, intron 7 of 12) protein_coding-intron (FBgn0264357, intron 7 of 12) -18598 FBgn0260004 FBgn0260004 FBtr0084027 Snmp1 protein_coding CG8478-S2-modencode_R2_peak_2188 chr3R 14410394 14410492 + 14 NA intron (FBgn0023083, intron 1 of 1) protein_coding-intron (FBgn0038627, intron 2 of 3) -1219 FBgn0023083 FBgn0023083 FBtr0290210 fray protein_coding CG8478-S2-modencode_R2_peak_1767 chr3L 22816709 22817182 + 14 NA intron (FBgn0027339, intron 1 of 5) protein_coding-intron (FBgn0027339, intron 2 of 6) 9543 FBgn0027339 FBgn0027339 FBtr0100184 jim protein_coding CG8478-S2-modencode_R2_peak_3083 chrX 12535722 12535920 + 14 NA intron (FBgn0030412, intron 14 of 23) protein_coding-intron (FBgn0030412, intron 13 of 22) 5392 FBgn0262187 FBgn0262187 FBtr0304204 mir-970 pre_miRNA CG8478-S2-modencode_R2_peak_2069 chr3R 10955981 10956117 + 14 NA TTS (FBgn0262315) pre_miRNA-TTS (FBgn0262315) 465 FBgn0262315 FBgn0262315 FBtr0304477 mir-2493 pre_miRNA CG8478-S2-modencode_R2_peak_2497 chr3R 26213704 26214318 + 14 NA promoter-TSS (FBgn0015221) protein_coding-promoter-TSS (FBgn0015221) -541 FBgn0015221 FBgn0015221 FBtr0085624 Fer2LCH protein_coding CG8478-S2-modencode_R2_peak_922 chr2R 13256190 13256351 + 14 NA intron (FBgn0261642, intron 7 of 7) protein_coding-intron (FBgn0261642, intron 6 of 7) 23080 FBgn0050232 FBgn0050232 FBtr0086965 tRNA:CR30232 tRNA CG8478-S2-modencode_R2_peak_2178 chr3R 14272551 14273369 + 14 NA promoter-TSS (FBgn0004652) protein_coding-promoter-TSS (FBgn0004652) -35607 FBgn0038621 FBgn0038621 FBtr0083654 CG10864 protein_coding CG8478-S2-modencode_R2_peak_824 chr2R 10107069 10107196 + 14 NA promoter-TSS (FBgn0033913) protein_coding-promoter-TSS (FBgn0033913) -295 FBgn0033913 FBgn0033913 FBtr0087534 CG8468 protein_coding CG8478-S2-modencode_R2_peak_1118 chr2R 17967469 17968116 + 14 NA promoter-TSS (FBgn0034691) protein_coding-promoter-TSS (FBgn0034691) -398 FBgn0034691 FBgn0034691 FBtr0308239 synj protein_coding CG8478-S2-modencode_R2_peak_868 chr2R 11842525 11842623 + 14 NA promoter-TSS (FBgn0034054) protein_coding-promoter-TSS (FBgn0034054) 27 FBgn0034054 FBgn0034054 FBtr0087201 CG8366 protein_coding CG8478-S2-modencode_R2_peak_191 chr2L 8366158 8366608 + 14 NA TTS (FBgn0261437) protein_coding-TTS (FBgn0261437) 374 FBgn0260439 FBgn0260439 FBtr0100533 Pp2A-29B protein_coding CG8478-S2-modencode_R2_peak_1101 chr2R 17494465 17494613 + 14 NA promoter-TSS (FBgn0034638) protein_coding-promoter-TSS (FBgn0034638) -81 FBgn0034638 FBgn0034638 FBtr0071691 CG10433 protein_coding CG8478-S2-modencode_R2_peak_112 chr2L 5007234 5007324 + 14 NA promoter-TSS (FBgn0053113) protein_coding-promoter-TSS (FBgn0053113) -2351 FBgn0053113 FBgn0053113 FBtr0301538 Rtnl1 protein_coding CG8478-S2-modencode_R2_peak_2220 chr3R 16608342 16608863 + 14 NA promoter-TSS (FBgn0038826) protein_coding-promoter-TSS (FBgn0038826) -10279 FBgn0046689 FBgn0046689 FBtr0083996 Takl1 protein_coding CG8478-S2-modencode_R2_peak_1875 chr3R 4484598 4484669 + 14 NA intron (FBgn0263231, intron 1 of 3) protein_coding-intron (FBgn0263231, intron 1 of 3) 1850 FBgn0263231 FBgn0263231 FBtr0081888 bel protein_coding CG8478-S2-modencode_R2_peak_2082 chr3R 11475798 11475956 + 14 NA Intergenic Intergenic 12987 FBgn0263041 FBgn0263041 FBtr0306930 CG43336 protein_coding CG8478-S2-modencode_R2_peak_1861 chr3R 3737399 3737562 + 14 NA promoter-TSS (FBgn0004901) protein_coding-promoter-TSS (FBgn0004901) 21 FBgn0004901 FBgn0004901 FBtr0304705 Prat protein_coding CG8478-S2-modencode_R2_peak_2126 chr3R 12145903 12146436 + 14 NA promoter-TSS (FBgn0011858) tRNA-promoter-TSS (FBgn0011858) -956 FBgn0011858 FBgn0011858 FBtr0083267 tRNA:F2:89BC tRNA CG8478-S2-modencode_R2_peak_2351 chr3R 20597084 20597671 + 14 NA promoter-TSS (FBgn0259233) protein_coding-promoter-TSS (FBgn0259233) -2292 FBgn0259233 FBgn0259233 FBtr0299843 CG42331 protein_coding CG8478-S2-modencode_R2_peak_798 chr2R 9711546 9711664 + 14 NA promoter-TSS (FBgn0033871) protein_coding-promoter-TSS (FBgn0033871) 449 FBgn0000662 FBgn0000662 FBtr0304697 fl(2)d protein_coding CG8478-S2-modencode_R2_peak_1600 chr3L 16151116 16151189 + 14 NA intron (FBgn0036576, intron 1 of 4) protein_coding-intron (FBgn0036576, intron 1 of 4) 6649 FBgn0036576 FBgn0036576 FBtr0307519 CG5151 protein_coding CG8478-S2-modencode_R2_peak_700 chr2R 6994381 6994453 + 14 NA promoter-TSS (FBgn0040765) protein_coding-promoter-TSS (FBgn0040765) -96 FBgn0040765 FBgn0040765 FBtr0088210 luna protein_coding CG8478-S2-modencode_R2_peak_814 chr2R 9883785 9883973 + 14 NA intron (FBgn0002643, intron 2 of 6) protein_coding-intron (FBgn0002643, intron 2 of 6) -5664 FBgn0020620 FBgn0020620 FBtr0087604 RN-tre protein_coding CG8478-S2-modencode_R2_peak_852 chr2R 11268260 11268621 + 14 NA promoter-TSS (FBgn0026370) protein_coding-promoter-TSS (FBgn0026370) 25 FBgn0000996 FBgn0000996 FBtr0087387 dup protein_coding CG8478-S2-modencode_R2_peak_3262 chrX 19053850 19054015 + 14 NA intron (FBgn0261461, intron 2 of 5) protein_coding-intron (FBgn0261461, intron 1 of 4) 9323 FBgn0263571 FBgn0263571 FBtr0309726 mir-4959 pre_miRNA CG8478-S2-modencode_R2_peak_2225 chr3R 16716803 16717355 + 14 NA promoter-TSS (FBgn0051333) tRNA-promoter-TSS (FBgn0051333) 235 FBgn0051334 FBgn0051334 FBtr0083976 tRNA:CR31334 tRNA CG8478-S2-modencode_R2_peak_2615 chrUextra 2142018 2142132 + 14 NA NA NA NA NA CG8478-S2-modencode_R2_peak_621 chr2R 6098851 6098985 + 14 NA promoter-TSS (FBgn0000448) protein_coding-promoter-TSS (FBgn0000448) -11722 FBgn0085250 FBgn0085250 FBtr0299834 CG34221 protein_coding CG8478-S2-modencode_R2_peak_2118 chr3R 12098792 12099195 + 14 NA promoter-TSS (FBgn0261286) protein_coding-promoter-TSS (FBgn0261286) 817 FBgn0250823 FBgn0250823 FBtr0100332 gish protein_coding CG8478-S2-modencode_R2_peak_2907 chrX 8293140 8293240 + 14 NA promoter-TSS (FBgn0040928) protein_coding-promoter-TSS (FBgn0040928) 217 FBgn0030034 FBgn0030034 FBtr0071174 CG10555 protein_coding CG8478-S2-modencode_R2_peak_3272 chrX 19416722 19416973 + 14 NA intron (FBgn0261573, intron 1 of 6) protein_coding-intron (FBgn0261573, intron 1 of 6) -1004 FBgn0027291 FBgn0027291 FBtr0074780 l(1)G0156 protein_coding CG8478-S2-modencode_R2_peak_1177 chr2R 20631449 20631942 + 14 NA exon (FBgn0050421, exon 1 of 7) protein_coding-exon (FBgn0050421, exon 1 of 7) 360 FBgn0050421 FBgn0050421 FBtr0072369 CG30421 protein_coding CG8478-S2-modencode_R2_peak_2356 chr3R 20920448 20920656 + 14 NA promoter-TSS (FBgn0004898) protein_coding-promoter-TSS (FBgn0004898) -279 FBgn0004898 FBgn0004898 FBtr0084771 fd96Cb protein_coding CG8478-S2-modencode_R2_peak_42 chr2L 1158745 1158949 + 14 NA promoter-TSS (FBgn0261458) protein_coding-promoter-TSS (FBgn0261458) 186 FBgn0031312 FBgn0031312 FBtr0331287 Tango14 protein_coding CG8478-S2-modencode_R2_peak_940 chr2R 13680014 13680159 + 14 NA promoter-TSS (FBgn0028743) protein_coding-promoter-TSS (FBgn0028743) -301 FBgn0028743 FBgn0028743 FBtr0301142 CG5036 protein_coding CG8478-S2-modencode_R2_peak_417 chr2L 20829610 20830018 + 14 NA exon (FBgn0051673, exon 1 of 4) protein_coding-exon (FBgn0051673, exon 1 of 4) 206 FBgn0051673 FBgn0051673 FBtr0081422 CG31673 protein_coding CG8478-S2-modencode_R2_peak_943 chr2R 13758019 13759139 + 14 NA intron (FBgn0034282, intron 2 of 6) protein_coding-intron (FBgn0034282, intron 3 of 6) 936 FBgn0034282 FBgn0034282 FBtr0113091 Mapmodulin protein_coding CG8478-S2-modencode_R2_peak_274 chr2L 12475787 12476031 + 14 NA intron (FBgn0259176, intron 2 of 2) protein_coding-intron (FBgn0259176, intron 2 of 2) -15819 FBgn0262203 FBgn0262203 FBtr0304239 mir-967 pre_miRNA CG8478-S2-modencode_R2_peak_404 chr2L 20148453 20148604 + 14 NA Intergenic Intergenic -13605 FBgn0032853 FBgn0032853 FBtr0081378 CG10651 protein_coding CG8478-S2-modencode_R2_peak_1733 chr3L 20486905 20487010 + 14 NA promoter-TSS (FBgn0037000) protein_coding-promoter-TSS (FBgn0037000) -367 FBgn0037000 FBgn0037000 FBtr0078221 CG5130 protein_coding CG8478-S2-modencode_R2_peak_1159 chr2R 19757133 19757300 + 14 NA promoter-TSS (FBgn0011236) protein_coding-promoter-TSS (FBgn0011236) -580 FBgn0011236 FBgn0011236 FBtr0072129 ken protein_coding CG8478-S2-modencode_R2_peak_3290 chrX 20067341 20067544 + 14 NA promoter-TSS (FBgn0000084) protein_coding-promoter-TSS (FBgn0000084) 64 FBgn0000084 FBgn0000084 FBtr0301931 AnnX protein_coding CG8478-S2-modencode_R2_peak_984 chr2R 14417039 14417462 + 14 NA intron (FBgn0034356, intron 1 of 1) protein_coding-intron (FBgn0034356, intron 1 of 1) -2663 FBgn0034356 FBgn0034356 FBtr0113093 CG10924 protein_coding CG8478-S2-modencode_R2_peak_144 chr2L 6494418 6494493 + 14 NA promoter-TSS (FBgn0031824) protein_coding-promoter-TSS (FBgn0031824) 72 FBgn0031824 FBgn0031824 FBtr0079263 CG9547 protein_coding CG8478-S2-modencode_R2_peak_2277 chr3R 19001070 19001168 + 14 NA intron (FBgn0039061, intron 1 of 3) protein_coding-intron (FBgn0039061, intron 1 of 3) 1524 FBgn0039061 FBgn0039061 FBtr0301382 Ir protein_coding CG8478-S2-modencode_R2_peak_502 chr2R 2698839 2698926 + 14 NA promoter-TSS (FBgn0022224) protein_coding-promoter-TSS (FBgn0022224) 355 FBgn0028954 FBgn0028954 FBtr0086158 CG3287 protein_coding CG8478-S2-modencode_R2_peak_2036 chr3R 9470169 9470535 + 14 NA intron (FBgn0263396, intron 1 of 8) protein_coding-intron (FBgn0263396, intron 1 of 4) 1674 FBgn0263396 FBgn0263396 FBtr0082854 sqd protein_coding CG8478-S2-modencode_R2_peak_1148 chr2R 19519863 19520217 + 14 NA promoter-TSS (FBgn0004795) protein_coding-promoter-TSS (FBgn0004795) -95 FBgn0004795 FBgn0004795 FBtr0072073 retn protein_coding CG8478-S2-modencode_R2_peak_231 chr2L 9237848 9238039 + 14 NA intron (FBgn0041092, intron 4 of 12) protein_coding-intron (FBgn0041092, intron 5 of 14) -1349 FBgn0051885 FBgn0051885 FBtr0079820 tRNA:CR31885 tRNA CG8478-S2-modencode_R2_peak_2311 chr3R 19495493 19495723 + 14 NA promoter-TSS (FBgn0051145) protein_coding-promoter-TSS (FBgn0051145) -230 FBgn0051145 FBgn0051145 FBtr0290057 CG31145 protein_coding CG8478-S2-modencode_R2_peak_1578 chr3L 15142235 15142327 + 14 NA intron (FBgn0036485, intron 1 of 4) protein_coding-intron (FBgn0036485, intron 1 of 4) -1325 FBgn0036485 FBgn0036485 FBtr0331831 FucTA protein_coding CG8478-S2-modencode_R2_peak_718 chr2R 7110483 7110571 + 14 NA TTS (FBgn0037084) protein_coding-TTS (FBgn0037084) 151 FBgn0033584 FBgn0033584 FBtr0088105 CG7737 protein_coding CG8478-S2-modencode_R2_peak_3256 chrX 19043440 19043656 + 14 NA intron (FBgn0261461, intron 2 of 5) protein_coding-intron (FBgn0261461, intron 1 of 4) -2771 FBgn0261461 FBgn0261461 FBtr0299625 RhoGAP18B protein_coding CG8478-S2-modencode_R2_peak_811 chr2R 9877876 9878257 + 14 NA promoter-TSS (FBgn0002643) protein_coding-promoter-TSS (FBgn0002643) 149 FBgn0020620 FBgn0020620 FBtr0087604 RN-tre protein_coding CG8478-S2-modencode_R2_peak_636 chr2R 6418964 6419269 + 14 NA TTS (FBgn0005630) protein_coding-TTS (FBgn0005630) 3467 FBgn0005630 FBgn0005630 FBtr0089362 lola protein_coding CG8478-S2-modencode_R2_peak_2307 chr3R 19185268 19185469 + 14 NA exon (FBgn0002622, exon 2 of 2) protein_coding-exon (FBgn0002622, exon 2 of 2) 834 FBgn0002622 FBgn0002622 FBtr0084410 RpS3 protein_coding CG8478-S2-modencode_R2_peak_3257 chrX 19047201 19047521 + 14 NA exon (FBgn0261461, exon 2 of 8) protein_coding-exon (FBgn0261461, exon 2 of 8) -6584 FBgn0261461 FBgn0261461 FBtr0299625 RhoGAP18B protein_coding CG8478-S2-modencode_R2_peak_3192 chrX 15728495 15729077 + 14 NA promoter-TSS (FBgn0052582) protein_coding-promoter-TSS (FBgn0052582) 720 FBgn0000319 FBgn0000319 FBtr0074180 Chc protein_coding CG8478-S2-modencode_R2_peak_2021 chr3R 8548631 8548737 + 14 NA promoter-TSS (FBgn0002719) protein_coding-promoter-TSS (FBgn0002719) -3170 FBgn0002719 FBgn0002719 FBtr0330025 Men protein_coding CG8478-S2-modencode_R2_peak_1137 chr2R 18450074 18450257 + 14 NA promoter-TSS (FBgn0003175) protein_coding-promoter-TSS (FBgn0003175) 313 FBgn0034737 FBgn0034737 FBtr0071836 CG11362 protein_coding CG8478-S2-modencode_R2_peak_345 chr2L 16545824 16546171 + 14 NA intron (FBgn0259735, intron 1 of 4) protein_coding-intron (FBgn0259735, intron 1 of 2) 3451 FBgn0051816 FBgn0051816 FBtr0080868 CG31816 protein_coding CG8478-S2-modencode_R2_peak_166 chr2L 7914805 7914937 + 14 NA intron (FBgn0085450, intron 2 of 2) protein_coding-intron (FBgn0085450, intron 1 of 1) -24277 FBgn0053121 FBgn0053121 FBtr0079557 Spn28Db protein_coding CG8478-S2-modencode_R2_peak_33 chr2L 522163 522338 + 14 NA intron (FBgn0003963, intron 2 of 8) protein_coding-intron (FBgn0003963, intron 1 of 7) 20330 FBgn0010602 FBgn0010602 FBtr0310029 lwr protein_coding CG8478-S2-modencode_R2_peak_398 chr2L 19570236 19570660 + 14 NA promoter-TSS (FBgn0262377) pre_miRNA-promoter-TSS (FBgn0262377) -192 FBgn0262449 FBgn0262449 FBtr0309745 mir-2b-2 pre_miRNA CG8478-S2-modencode_R2_peak_118 chr2L 5290286 5290413 + 14 NA Intergenic Intergenic 11298 FBgn0031696 FBgn0031696 FBtr0079069 Bub1 protein_coding CG8478-S2-modencode_R2_peak_2278 chr3R 19016097 19016317 + 14 NA promoter-TSS (FBgn0262975) protein_coding-promoter-TSS (FBgn0262975) 13549 FBgn0011596 FBgn0011596 FBtr0084399 fzo protein_coding CG8478-S2-modencode_R2_peak_2393 chr3R 21934312 21934553 + 14 NA exon (FBgn0051324, exon 2 of 5) protein_coding-exon (FBgn0051324, exon 2 of 5) -9999 FBgn0039411 FBgn0039411 FBtr0113293 dys protein_coding CG8478-S2-modencode_R2_peak_1751 chr3L 21375409 21375534 + 14 NA promoter-TSS (FBgn0261258) protein_coding-promoter-TSS (FBgn0261258) -130 FBgn0261258 FBgn0261258 FBtr0333386 rgn protein_coding CG8478-S2-modencode_R2_peak_2708 chrX 2439587 2439938 + 14 NA promoter-TSS (FBgn0261451) protein_coding-promoter-TSS (FBgn0261451) -339 FBgn0261451 FBgn0261451 FBtr0305159 trol protein_coding CG8478-S2-modencode_R2_peak_2267 chr3R 17868352 17868456 + 14 NA intron (FBgn0264491, intron 1 of 8) protein_coding-intron (FBgn0264491, intron 1 of 8) 490 FBgn0264491 FBgn0264491 FBtr0084178 how protein_coding CG8478-S2-modencode_R2_peak_3014 chrX 10365935 10366268 + 14 NA exon (FBgn0261710, exon 2 of 6) protein_coding-exon (FBgn0261710, exon 2 of 6) 1519 FBgn0261710 FBgn0261710 FBtr0307488 nocte protein_coding CG8478-S2-modencode_R2_peak_2612 chrU 9151215 9151354 + 14 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1270 chr3L 2591311 2591459 + 14 NA exon (FBgn0016794, exon 2 of 8) protein_coding-exon (FBgn0016794, exon 2 of 8) 1971 FBgn0016794 FBgn0016794 FBtr0072927 dos protein_coding CG8478-S2-modencode_R2_peak_2966 chrX 9534681 9534794 + 14 NA promoter-TSS (FBgn0028341) protein_coding-promoter-TSS (FBgn0028341) -80 FBgn0028341 FBgn0028341 FBtr0303559 l(1)G0232 protein_coding CG8478-S2-modencode_R2_peak_588 chr2R 5453379 5453526 + 14 NA TTS (FBgn0085436) protein_coding-TTS (FBgn0085436) 4309 FBgn0033423 FBgn0033423 FBtr0088520 CG1809 protein_coding CG8478-S2-modencode_R2_peak_1863 chr3R 3789273 3789439 + 14 NA promoter-TSS (FBgn0000504) protein_coding-promoter-TSS (FBgn0000504) 3774 FBgn0000504 FBgn0000504 FBtr0081761 dsx protein_coding CG8478-S2-modencode_R2_peak_1306 chr3L 3419039 3419226 + 14 NA intron (FBgn0014388, intron 1 of 1) protein_coding-intron (FBgn0014388, intron 1 of 1) -1205 FBgn0014388 FBgn0014388 FBtr0073146 sty protein_coding CG8478-S2-modencode_R2_peak_1628 chr3L 17479053 17479213 + 14 NA intron (FBgn0036731, intron 1 of 2) protein_coding-intron (FBgn0036731, intron 1 of 2) 197 FBgn0036731 FBgn0036731 FBtr0075224 CG6333 protein_coding CG8478-S2-modencode_R2_peak_192 chr2L 8370750 8370841 + 14 NA TTS (FBgn0260439) protein_coding-TTS (FBgn0260439) -1289 FBgn0032029 FBgn0032029 FBtr0079649 CG17292 protein_coding CG8478-S2-modencode_R2_peak_2388 chr3R 21931065 21931259 + 14 NA Intergenic Intergenic -6729 FBgn0039411 FBgn0039411 FBtr0113293 dys protein_coding CG8478-S2-modencode_R2_peak_3038 chrX 10632953 10633137 + 14 NA intron (FBgn0052676, intron 1 of 3) protein_coding-intron (FBgn0052676, intron 1 of 3) -5490 FBgn0003204 FBgn0003204 FBtr0071496 ras protein_coding CG8478-S2-modencode_R2_peak_1223 chr3L 643231 643403 + 14 NA TTS (FBgn0263039) ncRNA-TTS (FBgn0263039) 1058 FBgn0262451 FBgn0262451 FBtr0304469 ban pre_miRNA CG8478-S2-modencode_R2_peak_967 chr2R 14238292 14238550 + 14 NA intron (FBgn0010575, intron 1 of 10) protein_coding-intron (FBgn0010575, intron 1 of 11) 6380 FBgn0010575 FBgn0010575 FBtr0329996 sbb protein_coding CG8478-S2-modencode_R2_peak_2576 chr4 1272441 1272550 + 14 NA intron (FBgn0053653, intron 21 of 22) protein_coding-intron (FBgn0053653, intron 22 of 23) 37932 FBgn0053653 FBgn0053653 FBtr0307334 Caps protein_coding CG8478-S2-modencode_R2_peak_1427 chr3L 8672132 8672280 + 14 NA exon (FBgn0001168, exon 3 of 3) protein_coding-exon (FBgn0001168, exon 3 of 3) 3347 FBgn0001168 FBgn0001168 FBtr0076569 h protein_coding CG8478-S2-modencode_R2_peak_1794 chr3R 485418 485678 + 14 NA exon (FBgn0263346, exon 1 of 8) protein_coding-exon (FBgn0263346, exon 1 of 8) 243 FBgn0263346 FBgn0263346 FBtr0308853 CG43427 protein_coding CG8478-S2-modencode_R2_peak_428 chr2L 21402571 21402695 + 14 NA Intergenic Intergenic -1482 FBgn0051616 FBgn0051616 FBtr0085889 His-Psi:CR31616 pseudogene CG8478-S2-modencode_R2_peak_1143 chr2R 18574313 18574456 + 14 NA exon (FBgn0020257, exon 1 of 1) protein_coding-exon (FBgn0020257, exon 1 of 1) 2094 FBgn0020257 FBgn0020257 FBtr0330249 ppa protein_coding CG8478-S2-modencode_R2_peak_1582 chr3L 15227871 15228184 + 14 NA promoter-TSS (FBgn0029114) protein_coding-promoter-TSS (FBgn0029114) -692 FBgn0029114 FBgn0029114 FBtr0075607 Tollo protein_coding CG8478-S2-modencode_R2_peak_2171 chr3R 14061630 14061920 + 14 NA promoter-TSS (FBgn0011701) protein_coding-promoter-TSS (FBgn0011701) -141 FBgn0011701 FBgn0011701 FBtr0083564 repo protein_coding CG8478-S2-modencode_R2_peak_1815 chr3R 2162247 2162653 + 14 NA intron (FBgn0037429, intron 3 of 3) protein_coding-intron (FBgn0037429, intron 3 of 3) 1364 FBgn0037429 FBgn0037429 FBtr0301493 Osi19 protein_coding CG8478-S2-modencode_R2_peak_1221 chr3L 638429 638872 + 14 NA promoter-TSS (FBgn0263342) ncRNA-promoter-TSS (FBgn0263342) -609 FBgn0263342 FBgn0263342 FBtr0308776 CR43423 ncRNA CG8478-S2-modencode_R2_peak_1513 chr3L 11277627 11277825 + 14 NA Intergenic Intergenic 11293 FBgn0036152 FBgn0036152 FBtr0076183 CG6175 protein_coding CG8478-S2-modencode_R2_peak_1267 chr3L 2576488 2576762 + 14 NA intron (FBgn0010909, intron 3 of 17) protein_coding-intron (FBgn0010909, intron 3 of 18) 9915 FBgn0010909 FBgn0010909 FBtr0333362 msn protein_coding CG8478-S2-modencode_R2_peak_1110 chr2R 17594989 17595092 + 14 NA Intergenic Intergenic 4074 FBgn0050403 FBgn0050403 FBtr0114523 CG30403 protein_coding CG8478-S2-modencode_R2_peak_2521 chr3R 26888182 26888316 + 14 NA Intergenic Intergenic -1646 FBgn0002413 FBgn0002413 FBtr0085744 dco protein_coding CG8478-S2-modencode_R2_peak_387 chr2L 19141297 19141621 + 14 NA intron (FBgn0010300, intron 1 of 4) protein_coding-intron (FBgn0010300, intron 1 of 3) -6226 FBgn0086447 FBgn0086447 FBtr0081161 l(2)37Cg protein_coding CG8478-S2-modencode_R2_peak_969 chr2R 14241995 14242484 + 14 NA intron (FBgn0010575, intron 1 of 10) protein_coding-intron (FBgn0010575, intron 1 of 11) 2562 FBgn0010575 FBgn0010575 FBtr0329996 sbb protein_coding CG8478-S2-modencode_R2_peak_2076 chr3R 11119522 11119778 + 14 NA intron (FBgn0003721, intron 1 of 7) protein_coding-intron (FBgn0003721, intron 3 of 9) 12378 FBgn0003721 FBgn0003721 FBtr0305656 Tm1 protein_coding CG8478-S2-modencode_R2_peak_136 chr2L 6084093 6084353 + 14 NA intron (FBgn0028420, intron 1 of 3) protein_coding-intron (FBgn0028420, intron 1 of 3) 5770 FBgn0031778 FBgn0031778 FBtr0308942 CR9162 ncRNA CG8478-S2-modencode_R2_peak_776 chr2R 8903181 8903492 + 14 NA Intergenic Intergenic 19330 FBgn0008654 FBgn0008654 FBtr0087793 Su(z)2 protein_coding CG8478-S2-modencode_R2_peak_928 chr2R 13331947 13332481 + 14 NA TTS (FBgn0034219) protein_coding-TTS (FBgn0034219) 229 FBgn0027506 FBgn0027506 FBtr0086959 EDTP protein_coding CG8478-S2-modencode_R2_peak_1822 chr3R 2221548 2221704 + 14 NA intron (FBgn0037443, intron 1 of 10) protein_coding-intron (FBgn0037443, intron 1 of 10) 9987 FBgn0037443 FBgn0037443 FBtr0300261 CG1021 protein_coding CG8478-S2-modencode_R2_peak_993 chr2R 14538772 14539109 + 14 NA intron (FBgn0034371, intron 1 of 5) protein_coding-intron (FBgn0034371, intron 1 of 6) 1339 FBgn0034371 FBgn0034371 FBtr0086658 SP2637 protein_coding CG8478-S2-modencode_R2_peak_1425 chr3L 8543782 8543908 + 14 NA intron (FBgn0260442, intron 1 of 17) protein_coding-intron (FBgn0260442, intron 1 of 16) 4070 FBgn0260442 FBgn0260442 FBtr0333106 rhea protein_coding CG8478-S2-modencode_R2_peak_2446 chr3R 25081689 25082132 + 14 NA promoter-TSS (FBgn0003525) protein_coding-promoter-TSS (FBgn0003525) -408 FBgn0003525 FBgn0003525 FBtr0085397 stg protein_coding CG8478-S2-modencode_R2_peak_3048 chrX 10710829 10711262 + 14 NA intron (FBgn0262735, intron 1 of 5) protein_coding-intron (FBgn0262735, intron 1 of 5) -2919 FBgn0262735 FBgn0262735 FBtr0073419 Imp protein_coding CG8478-S2-modencode_R2_peak_3110 chrX 12628081 12628153 + 14 NA intron (FBgn0263865, intron 2 of 10) protein_coding-intron (FBgn0263865, intron 1 of 9) 8360 FBgn0263865 FBgn0263865 FBtr0333766 Smr protein_coding CG8478-S2-modencode_R2_peak_861 chr2R 11668693 11668866 + 14 NA intron (FBgn0083919, intron 5 of 15) protein_coding-intron (FBgn0083919, intron 5 of 15) 33671 FBgn0083919 FBgn0083919 FBtr0329910 Zasp52 protein_coding CG8478-S2-modencode_R2_peak_731 chr2R 7481330 7481499 + 14 NA promoter-TSS (FBgn0033636) protein_coding-promoter-TSS (FBgn0033636) -2424 FBgn0086658 FBgn0086658 FBtr0091640 snoRNA:Psi28S-1180 snoRNA CG8478-S2-modencode_R2_peak_2974 chrX 9576844 9577051 + 14 NA exon (FBgn0261617, exon 2 of 14) protein_coding-exon (FBgn0261617, exon 2 of 14) 3744 FBgn0261617 FBgn0261617 FBtr0302722 nej protein_coding CG8478-S2-modencode_R2_peak_1138 chr2R 18457494 18457698 + 14 NA intron (FBgn0260866, intron 1 of 3) protein_coding-intron (FBgn0260866, intron 1 of 3) 7744 FBgn0034737 FBgn0034737 FBtr0071836 CG11362 protein_coding CG8478-S2-modencode_R2_peak_167 chr2L 7960565 7960758 + 14 NA intron (FBgn0085450, intron 1 of 1) protein_coding-intron (FBgn0085450, intron 1 of 1) 16404 FBgn0085450 FBgn0085450 FBtr0112720 Snoo protein_coding CG8478-S2-modencode_R2_peak_1069 chr2R 16475844 16476110 + 14 NA intron (FBgn0015907, intron 1 of 8) protein_coding-intron (FBgn0015907, intron 1 of 8) 967 FBgn0015907 FBgn0015907 FBtr0086222 bl protein_coding CG8478-S2-modencode_R2_peak_1437 chr3L 8698132 8698524 + 14 NA Intergenic Intergenic 14997 FBgn0011509 FBgn0011509 FBtr0076598 SrpRbeta protein_coding CG8478-S2-modencode_R2_peak_2813 chrX 4833701 4833869 + 14 NA intron (FBgn0004368, intron 1 of 11) protein_coding-intron (FBgn0004368, intron 1 of 11) 620 FBgn0004368 FBgn0004368 FBtr0301794 Ptp4E protein_coding CG8478-S2-modencode_R2_peak_2762 chrX 3616589 3616807 + 14 NA intron (FBgn0086899, intron 2 of 7) protein_coding-intron (FBgn0086899, intron 2 of 8) -3033 FBgn0015286 FBgn0015286 FBtr0070584 Rala protein_coding CG8478-S2-modencode_R2_peak_2684 chrX 2072812 2073003 + 14 NA promoter-TSS (FBgn0015036) protein_coding-promoter-TSS (FBgn0015036) -10 FBgn0015036 FBgn0015036 FBtr0070388 Cyp4ae1 protein_coding CG8478-S2-modencode_R2_peak_512 chr2R 3188319 3188409 + 14 NA TTS (FBgn0003174) protein_coding-TTS (FBgn0003174) -10549 FBgn0033158 FBgn0033158 FBtr0088963 CG12164 protein_coding CG8478-S2-modencode_R2_peak_2895 chrX 7831593 7832001 + 14 NA intron (FBgn0260970, intron 2 of 11) protein_coding-intron (FBgn0260970, intron 1 of 10) 1868 FBgn0260970 FBgn0260970 FBtr0331299 CG42593 protein_coding CG8478-S2-modencode_R2_peak_2470 chr3R 25602064 25602341 + 14 NA intron (FBgn0001297, intron 1 of 2) protein_coding-intron (FBgn0001297, intron 1 of 2) 4251 FBgn0039694 FBgn0039694 FBtr0085538 fig protein_coding CG8478-S2-modencode_R2_peak_2100 chr3R 11857719 11857827 + 14 NA intron (FBgn0003117, intron 1 of 3) protein_coding-intron (FBgn0003117, intron 1 of 3) -2339 FBgn0003117 FBgn0003117 FBtr0083221 pnr protein_coding CG8478-S2-modencode_R2_peak_2602 chrU 5508103 5508230 + 14 NA NA NA NA NA CG8478-S2-modencode_R2_peak_2374 chr3R 21809097 21809438 + 14 NA intron (FBgn0015269, intron 1 of 16) protein_coding-intron (FBgn0015269, intron 1 of 17) 532 FBgn0015269 FBgn0015269 FBtr0084952 Nf1 protein_coding CG8478-S2-modencode_R2_peak_2312 chr3R 19615141 19615311 + 14 NA intron (FBgn0015513, intron 1 of 14) protein_coding-intron (FBgn0015513, intron 1 of 13) 7738 FBgn0015513 FBgn0015513 FBtr0304729 mbc protein_coding CG8478-S2-modencode_R2_peak_26 chr2L 502181 502267 + 14 NA intron (FBgn0003963, intron 2 of 8) protein_coding-intron (FBgn0003963, intron 1 of 7) -22536 FBgn0043364 FBgn0043364 FBtr0310030 cbt protein_coding CG8478-S2-modencode_R2_peak_3220 chrX 16692340 16692478 + 14 NA exon (FBgn0030791, exon 3 of 3) protein_coding-exon (FBgn0030791, exon 3 of 3) 1705 FBgn0030791 FBgn0030791 FBtr0306801 CG9132 protein_coding CG8478-S2-modencode_R2_peak_2008 chr3R 8206791 8206975 + 14 NA TTS (FBgn0010044) protein_coding-TTS (FBgn0010044) 1138 FBgn0010044 FBgn0010044 FBtr0082575 GstD8 protein_coding CG8478-S2-modencode_R2_peak_3125 chrX 12981559 12981690 + 14 NA intron (FBgn0010303, intron 1 of 6) protein_coding-intron (FBgn0010303, intron 1 of 9) 2842 FBgn0010303 FBgn0010303 FBtr0073748 hep protein_coding CG8478-S2-modencode_R2_peak_1430 chr3L 8681623 8681988 + 14 NA Intergenic Intergenic 12946 FBgn0001168 FBgn0001168 FBtr0076569 h protein_coding CG8478-S2-modencode_R2_peak_2669 chrX 1793724 1793891 + 14 NA promoter-TSS (FBgn0000117) protein_coding-promoter-TSS (FBgn0000117) -250 FBgn0000117 FBgn0000117 FBtr0332583 arm protein_coding CG8478-S2-modencode_R2_peak_2131 chr3R 12257883 12258463 + 14 NA promoter-TSS (FBgn0038424) protein_coding-promoter-TSS (FBgn0038424) 511 FBgn0051282 FBgn0051282 FBtr0083285 tRNA:CR31282 tRNA CG8478-S2-modencode_R2_peak_1055 chr2R 15375354 15375563 + 14 NA exon (FBgn0034452, exon 7 of 9) protein_coding-exon (FBgn0034452, exon 7 of 9) -1116 FBgn0034451 FBgn0034451 FBtr0086502 CG11242 protein_coding CG8478-S2-modencode_R2_peak_1772 chr3L 22902359 22902915 + 14 NA promoter-TSS (FBgn0037206) protein_coding-promoter-TSS (FBgn0037206) -954 FBgn0037206 FBgn0037206 FBtr0331397 CG12768 protein_coding CG8478-S2-modencode_R2_peak_1625 chr3L 17002274 17002726 + 14 NA intron (FBgn0036684, intron 1 of 6) protein_coding-intron (FBgn0036684, intron 1 of 6) 6651 FBgn0036685 FBgn0036685 FBtr0332121 CG6664 protein_coding CG8478-S2-modencode_R2_peak_845 chr2R 11023065 11023389 + 14 NA intron (FBgn0015371, intron 1 of 5) protein_coding-intron (FBgn0015371, intron 1 of 4) 9797 FBgn0262954 FBgn0262954 FBtr0112379 Rpb12 protein_coding CG8478-S2-modencode_R2_peak_92 chr2L 3655852 3655973 + 14 NA intron (FBgn0000721, intron 1 of 9) protein_coding-intron (FBgn0000721, intron 1 of 9) -6833 FBgn0085369 FBgn0085369 FBtr0302391 CG34340 protein_coding CG8478-S2-modencode_R2_peak_2991 chrX 9983071 9983268 + 14 NA intron (FBgn0083940, intron 2 of 8) protein_coding-intron (FBgn0083940, intron 2 of 6) 2603 FBgn0083940 FBgn0083940 FBtr0110782 CG34104 protein_coding CG8478-S2-modencode_R2_peak_2932 chrX 9185470 9185568 + 14 NA intron (FBgn0002576, intron 3 of 4) protein_coding-intron (FBgn0002576, intron 3 of 5) 6837 FBgn0002576 FBgn0002576 FBtr0112814 lz protein_coding CG8478-S2-modencode_R2_peak_3281 chrX 19744719 19744954 + 14 NA promoter-TSS (FBgn0261811) protein_coding-promoter-TSS (FBgn0261811) -1413 FBgn0031078 FBgn0031078 FBtr0074799 CG11943 protein_coding CG8478-S2-modencode_R2_peak_716 chr2R 7092577 7092887 + 14 NA intron (FBgn0003396, intron 1 of 6) protein_coding-intron (FBgn0003396, intron 2 of 7) 14037 FBgn0033582 FBgn0033582 FBtr0330635 CG9084 protein_coding CG8478-S2-modencode_R2_peak_38 chr2L 740192 740330 + 14 NA intron (FBgn0026438, intron 4 of 7) protein_coding-intron (FBgn0026438, intron 4 of 7) 4134 FBgn0026438 FBgn0026438 FBtr0301316 Eaat2 protein_coding CG8478-S2-modencode_R2_peak_3136 chrX 13236048 13236194 + 14 NA Intergenic Intergenic 3734 FBgn0030474 FBgn0030474 FBtr0073766 CG15747 protein_coding CG8478-S2-modencode_R2_peak_2396 chr3R 21944445 21944636 + 14 NA intron (FBgn0051324, intron 3 of 4) protein_coding-intron (FBgn0051324, intron 1 of 2) -7841 FBgn0039413 FBgn0039413 FBtr0273389 CG14556 protein_coding CG8478-S2-modencode_R2_peak_24 chr2L 498098 498220 + 14 NA intron (FBgn0003963, intron 2 of 8) protein_coding-intron (FBgn0003963, intron 1 of 7) -18471 FBgn0043364 FBgn0043364 FBtr0310030 cbt protein_coding CG8478-S2-modencode_R2_peak_2859 chrX 6750304 6750448 + 14 NA Intergenic Intergenic -3705 FBgn0029915 FBgn0029915 FBtr0071040 CG14434 protein_coding CG8478-S2-modencode_R2_peak_476 chr2R 2034359 2034478 + 14 NA intron (FBgn0000546, intron 4 of 7) protein_coding-intron (FBgn0000546, intron 3 of 6) -4469 FBgn0011891 FBgn0011891 FBtr0086017 tRNA:K2:42Ae tRNA CG8478-S2-modencode_R2_peak_2420 chr3R 22977509 22977897 + 14 NA promoter-TSS (FBgn0039492) protein_coding-promoter-TSS (FBgn0039492) 340 FBgn0029155 FBgn0029155 FBtr0301707 Men-b protein_coding CG8478-S2-modencode_R2_peak_2498 chr3R 26275786 26276297 + 14 NA promoter-TSS (FBgn0028646) protein_coding-promoter-TSS (FBgn0028646) 87 FBgn0028646 FBgn0028646 FBtr0085695 aralar1 protein_coding CG8478-S2-modencode_R2_peak_296 chr2L 12822558 12822847 + 14 NA promoter-TSS (FBgn0015399) protein_coding-promoter-TSS (FBgn0015399) 85 FBgn0015399 FBgn0015399 FBtr0332210 kek1 protein_coding CG8478-S2-modencode_R2_peak_1114 chr2R 17601297 17601542 + 14 NA intron (FBgn0004362, intron 1 of 2) protein_coding-intron (FBgn0004362, intron 1 of 2) 583 FBgn0004362 FBgn0004362 FBtr0301410 HmgD protein_coding CG8478-S2-modencode_R2_peak_1170 chr2R 19957212 19957323 + 14 NA exon (FBgn0034971, exon 2 of 6) protein_coding-exon (FBgn0034971, exon 2 of 6) 834 FBgn0034971 FBgn0034971 FBtr0072179 CG3209 protein_coding CG8478-S2-modencode_R2_peak_2196 chr3R 14922317 14922549 + 14 NA promoter-TSS (FBgn0038679) protein_coding-promoter-TSS (FBgn0038679) 1719 FBgn0016120 FBgn0016120 FBtr0083728 ATPsyn-d protein_coding CG8478-S2-modencode_R2_peak_1283 chr3L 3198320 3198553 + 14 NA promoter-TSS (FBgn0035416) protein_coding-promoter-TSS (FBgn0035416) 611 FBgn0047135 FBgn0047135 FBtr0073107 CG32276 protein_coding CG8478-S2-modencode_R2_peak_1340 chr3L 4225799 4225944 + 14 NA promoter-TSS (FBgn0001257) protein_coding-promoter-TSS (FBgn0001257) 1431 FBgn0001257 FBgn0001257 FBtr0073250 ImpL2 protein_coding CG8478-S2-modencode_R2_peak_2455 chr3R 25304871 25305024 + 14 NA promoter-TSS (FBgn0004369) protein_coding-promoter-TSS (FBgn0004369) -473 FBgn0004369 FBgn0004369 FBtr0303454 Ptp99A protein_coding CG8478-S2-modencode_R2_peak_2810 chrX 4804681 4804838 + 14 NA intron (FBgn0052772, intron 1 of 5) protein_coding-intron (FBgn0052772, intron 1 of 5) 1578 FBgn0052772 FBgn0052772 FBtr0300997 CG32772 protein_coding CG8478-S2-modencode_R2_peak_2699 chrX 2198731 2199059 + 14 NA intron (FBgn0003079, intron 2 of 5) protein_coding-intron (FBgn0003079, intron 2 of 5) 8978 FBgn0003079 FBgn0003079 FBtr0111025 phl protein_coding CG8478-S2-modencode_R2_peak_1448 chr3L 9370521 9370673 + 14 NA promoter-TSS (FBgn0001225) protein_coding-promoter-TSS (FBgn0001225) -122 FBgn0001225 FBgn0001225 FBtr0076496 Hsp26 protein_coding CG8478-S2-modencode_R2_peak_3307 chrX 21237861 21238036 + 14 NA intron (FBgn0024251, intron 2 of 4) protein_coding-intron (FBgn0024182, intron 2 of 4) -1693 FBgn0024251 FBgn0024251 FBtr0331744 bbx protein_coding CG8478-S2-modencode_R2_peak_955 chr2R 14177689 14177872 + 14 NA intron (FBgn0010575, intron 1 of 10) protein_coding-intron (FBgn0034321, intron 1 of 3) 1187 FBgn0034321 FBgn0034321 FBtr0086757 CG14502 protein_coding CG8478-S2-modencode_R2_peak_1587 chr3L 15528972 15529124 + 14 NA exon (FBgn0004396, exon 1 of 6) protein_coding-exon (FBgn0004396, exon 1 of 6) 534 FBgn0004396 FBgn0004396 FBtr0075557 CrebA protein_coding CG8478-S2-modencode_R2_peak_2771 chrX 3645889 3646332 + 14 NA intron (FBgn0086899, intron 2 of 9) protein_coding-intron (FBgn0086899, intron 2 of 9) -20563 FBgn0086899 FBgn0086899 FBtr0070596 tlk protein_coding CG8478-S2-modencode_R2_peak_1449 chr3L 9376808 9377025 + 14 NA promoter-TSS (FBgn0001226) protein_coding-promoter-TSS (FBgn0001226) -247 FBgn0001226 FBgn0001226 FBtr0076454 Hsp27 protein_coding CG8478-S2-modencode_R2_peak_2258 chr3R 17674214 17674635 + 14 NA Intergenic Intergenic -2043 FBgn0045468 FBgn0045468 FBtr0084158 Gr93d protein_coding CG8478-S2-modencode_R2_peak_367 chr2L 18563369 18563450 + 14 NA promoter-TSS (FBgn0085370) protein_coding-promoter-TSS (FBgn0085370) 8239 FBgn0085370 FBgn0085370 FBtr0303162 Pde11 protein_coding CG8478-S2-modencode_R2_peak_747 chr2R 7524930 7525258 + 14 NA intron (FBgn0033638, intron 1 of 7) protein_coding-intron (FBgn0033638, intron 1 of 7) 3324 FBgn0033638 FBgn0033638 FBtr0088089 CG9005 protein_coding CG8478-S2-modencode_R2_peak_1765 chr3L 22815513 22815770 + 14 NA intron (FBgn0027339, intron 1 of 5) protein_coding-intron (FBgn0027339, intron 2 of 6) 10847 FBgn0027339 FBgn0027339 FBtr0100184 jim protein_coding CG8478-S2-modencode_R2_peak_1620 chr3L 16950255 16950363 + 14 NA promoter-TSS (FBgn0010352) protein_coding-promoter-TSS (FBgn0010352) 2274 FBgn0010352 FBgn0010352 FBtr0075269 Nc73EF protein_coding CG8478-S2-modencode_R2_peak_1768 chr3L 22817907 22818165 + 14 NA promoter-TSS (FBgn0027339) protein_coding-promoter-TSS (FBgn0027339) 8452 FBgn0027339 FBgn0027339 FBtr0100184 jim protein_coding CG8478-S2-modencode_R2_peak_2252 chr3R 17425503 17425818 + 14 NA intron (FBgn0013984, intron 2 of 12) protein_coding-intron (FBgn0013984, intron 2 of 12) 7588 FBgn0263662 FBgn0263662 FBtr0310107 CR43653 ncRNA CG8478-S2-modencode_R2_peak_1472 chr3L 10344252 10344437 + 14 NA Intergenic Intergenic -14037 FBgn0262439 FBgn0262439 FBtr0304433 mir-276a pre_miRNA CG8478-S2-modencode_R2_peak_1926 chr3R 5261696 5261802 + 14 NA promoter-TSS (FBgn0261552) protein_coding-promoter-TSS (FBgn0261552) 18085 FBgn0261552 FBgn0261552 FBtr0302691 ps protein_coding CG8478-S2-modencode_R2_peak_3170 chrX 14946185 14946360 + 14 NA TTS (FBgn0030603) protein_coding-TTS (FBgn0030603) 4743 FBgn0030603 FBgn0030603 FBtr0073959 CG5541 protein_coding CG8478-S2-modencode_R2_peak_3285 chrX 19778499 19778701 + 14 NA intron (FBgn0052529, intron 1 of 6) protein_coding-intron (FBgn0052529, intron 4 of 8) 5493 FBgn0086782 FBgn0086782 FBtr0074802 amn protein_coding CG8478-S2-modencode_R2_peak_560 chr2R 3970905 3971009 + 14 NA promoter-TSS (FBgn0025469) protein_coding-promoter-TSS (FBgn0025469) -415 FBgn0025469 FBgn0025469 FBtr0088824 slv protein_coding CG8478-S2-modencode_R2_peak_2206 chr3R 15673380 15673547 + 14 NA intron (FBgn0038735, intron 1 of 9) protein_coding-intron (FBgn0038735, intron 1 of 8) 418 FBgn0038735 FBgn0038735 FBtr0083813 CG4662 protein_coding CG8478-S2-modencode_R2_peak_3049 chrX 10759730 10759893 + 14 NA exon (FBgn0030243, exon 7 of 7) protein_coding-exon (FBgn0030243, exon 7 of 7) -3509 FBgn0030244 FBgn0030244 FBtr0073382 CG2157 protein_coding CG8478-S2-modencode_R2_peak_240 chr2L 9496337 9496484 + 14 NA intron (FBgn0032120, intron 2 of 15) protein_coding-intron (FBgn0032120, intron 1 of 14) 936 FBgn0032120 FBgn0032120 FBtr0301065 CG33298 protein_coding CG8478-S2-modencode_R2_peak_2945 chrX 9389307 9389421 + 14 NA intron (FBgn0261260, intron 1 of 2) protein_coding-intron (FBgn0261260, intron 1 of 14) 857 FBgn0261260 FBgn0261260 FBtr0302154 mgl protein_coding CG8478-S2-modencode_R2_peak_2343 chr3R 20391322 20391775 + 14 NA intron (FBgn0039209, intron 1 of 3) protein_coding-intron (FBgn0039209, intron 2 of 4) 8611 FBgn0004190 FBgn0004190 FBtr0084652 snRNA:U6:96Ac snRNA CG8478-S2-modencode_R2_peak_186 chr2L 8229435 8229563 + 14 NA intron (FBgn0032006, intron 2 of 16) protein_coding-intron (FBgn0032006, intron 2 of 17) -8758 FBgn0032005 FBgn0032005 FBtr0306170 Snx6 protein_coding CG8478-S2-modencode_R2_peak_797 chr2R 9711070 9711317 + 14 NA intron (FBgn0000662, intron 1 of 4) protein_coding-intron (FBgn0000662, intron 1 of 3) 861 FBgn0000662 FBgn0000662 FBtr0304697 fl(2)d protein_coding CG8478-S2-modencode_R2_peak_1970 chr3R 6091499 6091883 + 14 NA intron (FBgn0262617, intron 1 of 13) protein_coding-intron (FBgn0262617, intron 1 of 11) 3857 FBgn0040078 FBgn0040078 FBtr0082226 pont protein_coding CG8478-S2-modencode_R2_peak_102 chr2L 4336057 4336299 + 14 NA intron (FBgn0020762, intron 1 of 6) protein_coding-intron (FBgn0020762, intron 1 of 6) 2252 FBgn0020762 FBgn0020762 FBtr0112898 Atet protein_coding CG8478-S2-modencode_R2_peak_675 chr2R 6957685 6957851 + 14 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -15323 FBgn0262817 FBgn0262817 FBtr0306049 CG43188 protein_coding CG8478-S2-modencode_R2_peak_1247 chr3L 1348414 1348744 + 14 NA intron (FBgn0003138, intron 3 of 7) protein_coding-intron (FBgn0003138, intron 1 of 6) -2537 FBgn0029514 FBgn0029514 FBtr0310160 CG9166 protein_coding CG8478-S2-modencode_R2_peak_1025 chr2R 15116666 15116781 + 14 NA TTS (FBgn0034422) protein_coding-TTS (FBgn0034422) 153 FBgn0010434 FBgn0010434 FBtr0301279 cora protein_coding CG8478-S2-modencode_R2_peak_1817 chr3R 2163958 2164028 + 14 NA Intergenic Intergenic -1826 FBgn0037430 FBgn0037430 FBtr0081708 Osi20 protein_coding CG8478-S2-modencode_R2_peak_2575 chr4 1270666 1270915 + 14 NA intron (FBgn0053653, intron 21 of 22) protein_coding-intron (FBgn0053653, intron 22 of 23) 36227 FBgn0053653 FBgn0053653 FBtr0307334 Caps protein_coding CG8478-S2-modencode_R2_peak_2102 chr3R 11876472 11876585 + 14 NA promoter-TSS (FBgn0027948) protein_coding-promoter-TSS (FBgn0027948) -1072 FBgn0027948 FBgn0027948 FBtr0304803 msps protein_coding CG8478-S2-modencode_R2_peak_1862 chr3R 3745560 3745799 + 14 NA promoter-TSS (FBgn0002542) protein_coding-promoter-TSS (FBgn0002542) 342 FBgn0037531 FBgn0037531 FBtr0300685 CG10445 protein_coding CG8478-S2-modencode_R2_peak_1589 chr3L 15559180 15559641 + 14 NA TTS (FBgn0036510) protein_coding-TTS (FBgn0036510) 297 FBgn0036511 FBgn0036511 FBtr0332091 CG6498 protein_coding CG8478-S2-modencode_R2_peak_1738 chr3L 20750187 20750427 + 14 NA Intergenic Intergenic -1522 FBgn0053912 FBgn0053912 FBtr0091916 CG33912 protein_coding CG8478-S2-modencode_R2_peak_1339 chr3L 4223321 4223497 + 14 NA promoter-TSS (FBgn0052252) ncRNA-promoter-TSS (FBgn0052252) -675 FBgn0052252 FBgn0052252 FBtr0307363 CR32252 ncRNA CG8478-S2-modencode_R2_peak_1433 chr3L 8686081 8686164 + 14 NA Intergenic Intergenic 17263 FBgn0001168 FBgn0001168 FBtr0076569 h protein_coding CG8478-S2-modencode_R2_peak_564 chr2R 4125167 4125313 + 14 NA promoter-TSS (FBgn0013726) protein_coding-promoter-TSS (FBgn0013726) -124 FBgn0013726 FBgn0013726 FBtr0088793 pnut protein_coding CG8478-S2-modencode_R2_peak_848 chr2R 11196578 11196748 + 14 NA TTS (FBgn0034008) protein_coding-TTS (FBgn0034008) 1971 FBgn0034008 FBgn0034008 FBtr0087392 CG8152 protein_coding CG8478-S2-modencode_R2_peak_3305 chrX 21203337 21203596 + 14 NA TTS (FBgn0015558) protein_coding-TTS (FBgn0015558) 6581 FBgn0015558 FBgn0015558 FBtr0329900 tty protein_coding CG8478-S2-modencode_R2_peak_361 chr2L 17472729 17473007 + 14 NA promoter-TSS (FBgn0032640) protein_coding-promoter-TSS (FBgn0032640) 347 FBgn0000183 FBgn0000183 FBtr0305688 BicD protein_coding CG8478-S2-modencode_R2_peak_905 chr2R 12718309 12718573 + 14 NA promoter-TSS (FBgn0262432) pre_miRNA-promoter-TSS (FBgn0262432) 246 FBgn0263659 FBgn0263659 FBtr0310103 CR43650 ncRNA CG8478-S2-modencode_R2_peak_2563 chr4 522038 522535 + 14 NA promoter-TSS (FBgn0004607) protein_coding-promoter-TSS (FBgn0004607) -150 FBgn0004607 FBgn0004607 FBtr0332913 zfh2 protein_coding CG8478-S2-modencode_R2_peak_3080 chrX 12515599 12515798 + 14 NA TTS (FBgn0030408) protein_coding-TTS (FBgn0030408) -2627 FBgn0030409 FBgn0030409 FBtr0073674 CG15728 protein_coding CG8478-S2-modencode_R2_peak_2159 chr3R 13471939 13472384 + 14 NA promoter-TSS (FBgn0051579) tRNA-promoter-TSS (FBgn0051579) 71 FBgn0051579 FBgn0051579 FBtr0083474 tRNA:CR31579 tRNA CG8478-S2-modencode_R2_peak_271 chr2L 12461081 12461866 + 14 NA promoter-TSS (FBgn0259176) protein_coding-promoter-TSS (FBgn0259176) -1383 FBgn0262203 FBgn0262203 FBtr0304239 mir-967 pre_miRNA CG8478-S2-modencode_R2_peak_2124 chr3R 12127547 12127681 + 14 NA exon (FBgn0250823, exon 12 of 12) protein_coding-exon (FBgn0250823, exon 12 of 12) -3871 FBgn0038412 FBgn0038412 FBtr0083266 Zip3 protein_coding CG8478-S2-modencode_R2_peak_1241 chr3L 1008366 1008726 + 14 NA promoter-TSS (FBgn0024277) protein_coding-promoter-TSS (FBgn0024277) -771 FBgn0024277 FBgn0024277 FBtr0072649 trio protein_coding CG8478-S2-modencode_R2_peak_2189 chr3R 14484647 14484968 + 14 NA promoter-TSS (FBgn0027841) protein_coding-promoter-TSS (FBgn0027841) 156 FBgn0051224 FBgn0051224 FBtr0083691 CG31224 protein_coding CG8478-S2-modencode_R2_peak_2221 chr3R 16609440 16609684 + 14 NA intron (FBgn0038826, intron 1 of 10) protein_coding-intron (FBgn0038826, intron 2 of 11) -11239 FBgn0046689 FBgn0046689 FBtr0083996 Takl1 protein_coding CG8478-S2-modencode_R2_peak_1036 chr2R 15282609 15282746 + 14 NA intron (FBgn0261439, intron 2 of 4) protein_coding-intron (FBgn0261439, intron 2 of 4) 760 FBgn0261439 FBgn0261439 FBtr0086554 SdhA protein_coding CG8478-S2-modencode_R2_peak_2276 chr3R 18999450 18999520 + 14 NA promoter-TSS (FBgn0039061) protein_coding-promoter-TSS (FBgn0039061) -110 FBgn0039061 FBgn0039061 FBtr0301382 Ir protein_coding CG8478-S2-modencode_R2_peak_2099 chr3R 11855308 11855421 + 14 NA intron (FBgn0003117, intron 1 of 3) protein_coding-intron (FBgn0003117, intron 1 of 3) -4748 FBgn0003117 FBgn0003117 FBtr0083221 pnr protein_coding CG8478-S2-modencode_R2_peak_2982 chrX 9616139 9616211 + 14 NA Intergenic Intergenic 6346 FBgn0263509 FBgn0263509 FBtr0309530 CR43498 ncRNA CG8478-S2-modencode_R2_peak_1411 chr3L 8050744 8051092 + 14 NA intron (FBgn0026263, intron 2 of 3) protein_coding-intron (FBgn0026263, intron 2 of 3) -1443 FBgn0026263 FBgn0026263 FBtr0302329 bip1 protein_coding CG8478-S2-modencode_R2_peak_2924 chrX 9004224 9004731 + 14 NA promoter-TSS (FBgn0030089) protein_coding-promoter-TSS (FBgn0030089) 894 FBgn0030089 FBgn0030089 FBtr0309254 AP-1gamma protein_coding CG8478-S2-modencode_R2_peak_2195 chr3R 14919232 14919370 + 14 NA TTS (FBgn0038678) protein_coding-TTS (FBgn0038678) 775 FBgn0004876 FBgn0004876 FBtr0083716 cdi protein_coding CG8478-S2-modencode_R2_peak_2788 chrX 3844209 3844303 + 14 NA intron (FBgn0029687, intron 1 of 5) protein_coding-intron (FBgn0029687, intron 2 of 6) 1247 FBgn0029687 FBgn0029687 FBtr0070618 Vap-33-1 protein_coding CG8478-S2-modencode_R2_peak_1199 chr3L 505946 506345 + 14 NA exon (FBgn0001316, exon 4 of 19) protein_coding-exon (FBgn0001316, exon 4 of 19) 5180 FBgn0085297 FBgn0085297 FBtr0112463 CG34268 protein_coding CG8478-S2-modencode_R2_peak_1595 chr3L 16019326 16019606 + 14 NA intron (FBgn0044028, intron 1 of 3) protein_coding-intron (FBgn0044028, intron 1 of 3) 2886 FBgn0044028 FBgn0044028 FBtr0075435 Notum protein_coding CG8478-S2-modencode_R2_peak_2030 chr3R 8844365 8844560 + 14 NA promoter-TSS (FBgn0020496) protein_coding-promoter-TSS (FBgn0020496) 7074 FBgn0020496 FBgn0020496 FBtr0082702 CtBP protein_coding CG8478-S2-modencode_R2_peak_1014 chr2R 14745266 14745362 + 14 NA exon (FBgn0034405, exon 1 of 4) protein_coding-exon (FBgn0034405, exon 1 of 4) 129 FBgn0034405 FBgn0034405 FBtr0300593 Jheh2 protein_coding CG8478-S2-modencode_R2_peak_2852 chrX 6563150 6564051 + 14 NA Intergenic Intergenic 4402 FBgn0029887 FBgn0029887 FBtr0070991 CG3198 protein_coding CG8478-S2-modencode_R2_peak_1596 chr3L 16036728 16037126 + 14 NA intron (FBgn0260635, intron 1 of 2) protein_coding-intron (FBgn0260635, intron 1 of 1) -5408 FBgn0264602 FBgn0264602 FBtr0333615 CR43951 ncRNA CG8478-S2-modencode_R2_peak_1881 chr3R 4635162 4635460 + 14 NA exon (FBgn0037635, exon 2 of 2) protein_coding-exon (FBgn0037635, exon 2 of 2) 222 FBgn0037635 FBgn0037635 FBtr0309099 CG9837 protein_coding CG8478-S2-modencode_R2_peak_2844 chrX 6250858 6251113 + 14 NA intron (FBgn0261955, intron 1 of 2) protein_coding-intron (FBgn0261955, intron 1 of 2) 4671 FBgn0261955 FBgn0261955 FBtr0070907 kdn protein_coding CG8478-S2-modencode_R2_peak_2175 chr3R 14222709 14223027 + 14 NA promoter-TSS (FBgn0028670) protein_coding-promoter-TSS (FBgn0028670) -218 FBgn0028670 FBgn0028670 FBtr0083657 Vha100-2 protein_coding CG8478-S2-modencode_R2_peak_2037 chr3R 9471052 9471328 + 14 NA intron (FBgn0263396, intron 1 of 8) protein_coding-intron (FBgn0263396, intron 1 of 4) 836 FBgn0263396 FBgn0263396 FBtr0082854 sqd protein_coding CG8478-S2-modencode_R2_peak_1680 chr3L 18236813 18237179 + 14 NA Intergenic Intergenic -8192 FBgn0036783 FBgn0036783 FBtr0075129 CheA75a protein_coding CG8478-S2-modencode_R2_peak_1521 chr3L 11516602 11516672 + 14 NA promoter-TSS (FBgn0036170) protein_coding-promoter-TSS (FBgn0036170) -824 FBgn0036170 FBgn0036170 FBtr0331531 CG11714 protein_coding CG8478-S2-modencode_R2_peak_2232 chr3R 16886563 16886676 + 14 NA promoter-TSS (FBgn0011672) protein_coding-promoter-TSS (FBgn0011672) -102 FBgn0011672 FBgn0011672 FBtr0306350 Mvl protein_coding CG8478-S2-modencode_R2_peak_382 chr2L 18947287 18947590 + 14 NA TTS (FBgn0262095) protein_coding-TTS (FBgn0262095) 1133 FBgn0262095 FBgn0262095 FBtr0304012 CG42848 protein_coding CG8478-S2-modencode_R2_peak_568 chr2R 4284211 4284392 + 14 NA TTS (FBgn0261588) protein_coding-TTS (FBgn0261588) 14927 FBgn0033289 FBgn0033289 FBtr0088764 CG2121 protein_coding CG8478-S2-modencode_R2_peak_1829 chr3R 2594122 2594232 + 14 NA intron (FBgn0261638, intron 1 of 2) ncRNA-intron (FBgn0261638, intron 1 of 2) 1405 FBgn0261638 FBgn0261638 FBtr0309069 CR42721 ncRNA CG8478-S2-modencode_R2_peak_1139 chr2R 18561803 18561873 + 14 NA Intergenic Intergenic 3581 FBgn0034763 FBgn0034763 FBtr0071868 RYBP protein_coding CG8478-S2-modencode_R2_peak_1440 chr3L 8944556 8944911 + 14 NA intron (FBgn0264305, intron 1 of 10) protein_coding-intron (FBgn0264307, intron 1 of 4) 1601 FBgn0264307 FBgn0264307 FBtr0331511 orb2 protein_coding CG8478-S2-modencode_R2_peak_1016 chr2R 15015170 15015368 + 14 NA promoter-TSS (FBgn0034417) protein_coding-promoter-TSS (FBgn0034417) -545 FBgn0034417 FBgn0034417 FBtr0100129 CG15117 protein_coding CG8478-S2-modencode_R2_peak_3229 chrX 17194000 17194192 + 14 NA intron (FBgn0024238, intron 1 of 5) protein_coding-intron (FBgn0024238, intron 1 of 4) -2413 FBgn0030838 FBgn0030838 FBtr0074428 CG5445 protein_coding CG8478-S2-modencode_R2_peak_2462 chr3R 25582943 25583362 + 14 NA Intergenic Intergenic 8211 FBgn0260990 FBgn0260990 FBtr0085477 yata protein_coding CG8478-S2-modencode_R2_peak_1406 chr3L 7861142 7861409 + 14 NA promoter-TSS (FBgn0052365) protein_coding-promoter-TSS (FBgn0052365) -806 FBgn0016694 FBgn0016694 FBtr0332080 Pdp1 protein_coding CG8478-S2-modencode_R2_peak_1385 chr3L 7426760 7426848 + 14 NA TTS (FBgn0014011) protein_coding-TTS (FBgn0014011) 1486 FBgn0014011 FBgn0014011 FBtr0076867 Rac2 protein_coding CG8478-S2-modencode_R2_peak_2687 chrX 2162536 2162761 + 14 NA intron (FBgn0023528, intron 2 of 8) protein_coding-intron (FBgn0023528, intron 2 of 8) 2064 FBgn0023528 FBgn0023528 FBtr0300793 CG2924 protein_coding CG8478-S2-modencode_R2_peak_1987 chr3R 7392551 7392780 + 14 NA exon (FBgn0037913, exon 1 of 4) protein_coding-exon (FBgn0037913, exon 1 of 4) 106 FBgn0037913 FBgn0037913 FBtr0100321 fabp protein_coding CG8478-S2-modencode_R2_peak_375 chr2L 18694028 18694201 + 14 NA intron (FBgn0032699, intron 1 of 3) protein_coding-intron (FBgn0032699, intron 1 of 3) 1308 FBgn0032699 FBgn0032699 FBtr0089628 CG10383 protein_coding CG8478-S2-modencode_R2_peak_1261 chr3L 2490005 2490143 + 14 NA promoter-TSS (FBgn0035346) protein_coding-promoter-TSS (FBgn0035346) -146 FBgn0035346 FBgn0035346 FBtr0072923 CG1146 protein_coding CG8478-S2-modencode_R2_peak_799 chr2R 9711868 9712019 + 14 NA promoter-TSS (FBgn0033871) protein_coding-promoter-TSS (FBgn0033871) 111 FBgn0000662 FBgn0000662 FBtr0304697 fl(2)d protein_coding CG8478-S2-modencode_R2_peak_2758 chrX 3585668 3586498 + 14 NA intron (FBgn0023215, intron 1 of 7) protein_coding-intron (FBgn0023215, intron 1 of 7) 2685 FBgn0023215 FBgn0023215 FBtr0301825 Mnt protein_coding CG8478-S2-modencode_R2_peak_289 chr2L 12529732 12530015 + 14 NA intron (FBgn0259176, intron 5 of 7) protein_coding-intron (FBgn0259176, intron 5 of 7) -13303 FBgn0261709 FBgn0261709 FBtr0303215 CR42746 ncRNA CG8478-S2-modencode_R2_peak_2328 chr3R 20032845 20032964 + 14 NA intron (FBgn0011725, intron 5 of 7) protein_coding-intron (FBgn0011725, intron 5 of 7) 11536 FBgn0039167 FBgn0039167 FBtr0084572 CG17786 protein_coding CG8478-S2-modencode_R2_peak_342 chr2L 16532926 16533811 + 14 NA promoter-TSS (FBgn0032587) protein_coding-promoter-TSS (FBgn0032587) -4446 FBgn0086038 FBgn0086038 FBtr0114314 snoRNA:Me28S-C1237 snoRNA CG8478-S2-modencode_R2_peak_2775 chrX 3664506 3664576 + 14 NA intron (FBgn0086899, intron 3 of 9) protein_coding-intron (FBgn0086899, intron 3 of 9) -2132 FBgn0086899 FBgn0086899 FBtr0070596 tlk protein_coding CG8478-S2-modencode_R2_peak_1597 chr3L 16037480 16037659 + 14 NA intron (FBgn0260635, intron 1 of 2) protein_coding-intron (FBgn0260635, intron 1 of 1) -4766 FBgn0264602 FBgn0264602 FBtr0333615 CR43951 ncRNA CG8478-S2-modencode_R2_peak_2538 chr3R 27550570 27550704 + 14 NA promoter-TSS (FBgn0003870) protein_coding-promoter-TSS (FBgn0003870) -1487 FBgn0003870 FBgn0003870 FBtr0303228 ttk protein_coding CG8478-S2-modencode_R2_peak_3021 chrX 10389283 10390151 + 14 NA intron (FBgn0085443, intron 9 of 10) protein_coding-intron (FBgn0085443, intron 8 of 9) -9057 FBgn0052687 FBgn0052687 FBtr0071458 CG32687 protein_coding CG8478-S2-modencode_R2_peak_3253 chrX 19037547 19037662 + 14 NA exon (FBgn0261461, exon 5 of 5) protein_coding-exon (FBgn0261461, exon 5 of 5) 3173 FBgn0261461 FBgn0261461 FBtr0299625 RhoGAP18B protein_coding CG8478-S2-modencode_R2_peak_1759 chr3L 21873490 21873640 + 14 NA intron (FBgn0262737, intron 1 of 10) protein_coding-intron (FBgn0262737, intron 1 of 8) 6574 FBgn0264470 FBgn0264470 FBtr0332737 CR43878 ncRNA CG8478-S2-modencode_R2_peak_3016 chrX 10369544 10369617 + 14 NA promoter-TSS (FBgn0261710) protein_coding-promoter-TSS (FBgn0261710) 831 FBgn0030206 FBgn0030206 FBtr0307487 CG2889 protein_coding CG8478-S2-modencode_R2_peak_282 chr2L 12516790 12517024 + 14 NA exon (FBgn0259176, exon 6 of 8) protein_coding-exon (FBgn0259176, exon 6 of 8) 8799 FBgn0263458 FBgn0263458 FBtr0309757 snoRNA:CG43051-a snoRNA CG8478-S2-modencode_R2_peak_2573 chr4 1264062 1264447 + 14 NA intron (FBgn0053653, intron 18 of 22) protein_coding-intron (FBgn0053653, intron 18 of 23) 29691 FBgn0053653 FBgn0053653 FBtr0307334 Caps protein_coding CG8478-S2-modencode_R2_peak_1961 chr3R 5923354 5923656 + 14 NA exon (FBgn0263413, exon 1 of 1) ncRNA-exon (FBgn0263413, exon 1 of 1) -2297 FBgn0262419 FBgn0262419 FBtr0304362 mir-277 pre_miRNA CG8478-S2-modencode_R2_peak_2085 chr3R 11478682 11478813 + 14 NA Intergenic Intergenic -13158 FBgn0053207 FBgn0053207 FBtr0083162 pxb protein_coding CG8478-S2-modencode_R2_peak_455 chr2R 1598133 1598401 + 14 NA intron (FBgn0000099, intron 1 of 4) protein_coding-intron (FBgn0000099, intron 4 of 7) 6287 FBgn0000099 FBgn0000099 FBtr0300504 ap protein_coding CG8478-S2-modencode_R2_peak_2851 chrX 6526812 6527094 + 14 NA intron (FBgn0029881, intron 3 of 9) protein_coding-intron (FBgn0029881, intron 3 of 9) -1039 FBgn0029880 FBgn0029880 FBtr0308654 CG14443 protein_coding CG8478-S2-modencode_R2_peak_58 chr2L 1911415 1911667 + 14 NA promoter-TSS (FBgn0031374) protein_coding-promoter-TSS (FBgn0031374) 26618 FBgn0011859 FBgn0011859 FBtr0077872 tRNA:G3:22BCa tRNA CG8478-S2-modencode_R2_peak_910 chr2R 12895940 12896395 + 14 NA TTS (FBgn0034180) protein_coding-TTS (FBgn0034180) 3209 FBgn0034179 FBgn0034179 FBtr0306574 CG6805 protein_coding CG8478-S2-modencode_R2_peak_2043 chr3R 9850139 9850445 + 14 NA intron (FBgn0264493, intron 1 of 8) protein_coding-intron (FBgn0264493, intron 1 of 8) 1389 FBgn0264493 FBgn0264493 FBtr0301632 rdx protein_coding CG8478-S2-modencode_R2_peak_3033 chrX 10439547 10439687 + 14 NA intron (FBgn0085443, intron 1 of 9) protein_coding-intron (FBgn0085443, intron 3 of 9) 21007 FBgn0030215 FBgn0030215 FBtr0310297 CG15296 protein_coding CG8478-S2-modencode_R2_peak_3157 chrX 14812759 14812838 + 14 NA promoter-TSS (FBgn0030597) protein_coding-promoter-TSS (FBgn0030597) -21 FBgn0030597 FBgn0030597 FBtr0073975 Eo protein_coding CG8478-S2-modencode_R2_peak_2532 chr3R 27283789 27284121 + 14 NA TTS (FBgn0261988) protein_coding-TTS (FBgn0261988) 1636 FBgn0039848 FBgn0039848 FBtr0085810 lox protein_coding CG8478-S2-modencode_R2_peak_1086 chr2R 17183476 17183769 + 14 NA promoter-TSS (FBgn0034614) protein_coding-promoter-TSS (FBgn0034614) -530 FBgn0034614 FBgn0034614 FBtr0071616 CG9752 protein_coding CG8478-S2-modencode_R2_peak_1522 chr3L 11526408 11526518 + 14 NA intron (FBgn0259481, intron 1 of 4) protein_coding-intron (FBgn0259481, intron 1 of 3) 1115 FBgn0259481 FBgn0259481 FBtr0333217 Mob2 protein_coding CG8478-S2-modencode_R2_peak_3101 chrX 12613413 12613632 + 14 NA intron (FBgn0264678, intron 1 of 1) protein_coding-intron (FBgn0263865, intron 2 of 9) -1029 FBgn0264678 FBgn0264678 FBtr0333775 CR43963 ncRNA CG8478-S2-modencode_R2_peak_2865 chrX 6769230 6769394 + 14 NA promoter-TSS (FBgn0263993) protein_coding-promoter-TSS (FBgn0263993) 6771 FBgn0263993 FBgn0263993 FBtr0330263 CG43736 protein_coding CG8478-S2-modencode_R2_peak_1726 chr3L 20182530 20182727 + 14 NA exon (FBgn0036945, exon 3 of 3) protein_coding-exon (FBgn0036945, exon 3 of 3) 1006 FBgn0036945 FBgn0036945 FBtr0074821 CG6981 protein_coding CG8478-S2-modencode_R2_peak_27 chr2L 502507 502662 + 14 NA intron (FBgn0003963, intron 2 of 8) protein_coding-intron (FBgn0003963, intron 1 of 7) -22896 FBgn0043364 FBgn0043364 FBtr0310030 cbt protein_coding CG8478-S2-modencode_R2_peak_1855 chr3R 3317996 3318128 + 13 NA promoter-TSS (FBgn0015569) protein_coding-promoter-TSS (FBgn0015569) 931 FBgn0261508 FBgn0261508 FBtr0302437 CG42656 protein_coding CG8478-S2-modencode_R2_peak_2163 chr3R 13528821 13528960 + 13 NA intron (FBgn0261885, intron 4 of 15) protein_coding-intron (FBgn0261885, intron 4 of 15) 15169 FBgn0261885 FBgn0261885 FBtr0301487 osa protein_coding CG8478-S2-modencode_R2_peak_622 chr2R 6159004 6159098 + 13 NA promoter-TSS (FBgn0033504) protein_coding-promoter-TSS (FBgn0033504) 5475 FBgn0033502 FBgn0033502 FBtr0088337 CG12910 protein_coding CG8478-S2-modencode_R2_peak_207 chr2L 8672265 8672392 + 13 NA promoter-TSS (FBgn0001114) protein_coding-promoter-TSS (FBgn0001114) -824 FBgn0001114 FBgn0001114 FBtr0307091 Glt protein_coding CG8478-S2-modencode_R2_peak_1393 chr3L 7826936 7827099 + 13 NA promoter-TSS (FBgn0016694) protein_coding-promoter-TSS (FBgn0016694) -24092 FBgn0052369 FBgn0052369 FBtr0076783 CG32369 protein_coding CG8478-S2-modencode_R2_peak_111 chr2L 5002366 5002503 + 13 NA intron (FBgn0053113, intron 1 of 4) protein_coding-intron (FBgn0053113, intron 1 of 4) 2494 FBgn0053113 FBgn0053113 FBtr0301538 Rtnl1 protein_coding CG8478-S2-modencode_R2_peak_1528 chr3L 11677711 11677822 + 13 NA TTS (FBgn0015828) protein_coding-TTS (FBgn0015828) 682 FBgn0036191 FBgn0036191 FBtr0273363 Sug protein_coding CG8478-S2-modencode_R2_peak_2640 chrX 935811 936003 + 13 NA exon (FBgn0003638, exon 2 of 8) protein_coding-exon (FBgn0003638, exon 2 of 8) -4575 FBgn0259144 FBgn0259144 FBtr0305650 CG42259 protein_coding CG8478-S2-modencode_R2_peak_2273 chr3R 18453175 18453351 + 13 NA promoter-TSS (FBgn0020278) protein_coding-promoter-TSS (FBgn0020278) -1256 FBgn0263452 FBgn0263452 FBtr0309305 CR43475 ncRNA CG8478-S2-modencode_R2_peak_1042 chr2R 15308310 15308677 + 13 NA intron (FBgn0263391, intron 1 of 12) protein_coding-intron (FBgn0263391, intron 2 of 11) 3958 FBgn0263391 FBgn0263391 FBtr0309107 hts protein_coding CG8478-S2-modencode_R2_peak_2194 chr3R 14750050 14750174 + 13 NA intron (FBgn0261113, intron 1 of 2) protein_coding-intron (FBgn0261113, intron 3 of 4) 4284 FBgn0038662 FBgn0038662 FBtr0083723 CG14290 protein_coding CG8478-S2-modencode_R2_peak_2757 chrX 3584570 3584673 + 13 NA intron (FBgn0023215, intron 1 of 7) protein_coding-intron (FBgn0023215, intron 1 of 7) 1223 FBgn0023215 FBgn0023215 FBtr0301825 Mnt protein_coding CG8478-S2-modencode_R2_peak_3050 chrX 11002906 11003290 + 13 NA promoter-TSS (FBgn0015245) protein_coding-promoter-TSS (FBgn0015245) -738 FBgn0015245 FBgn0015245 FBtr0073435 Hsp60 protein_coding CG8478-S2-modencode_R2_peak_1173 chr2R 20289964 20290114 + 13 NA promoter-TSS (FBgn0002787) protein_coding-promoter-TSS (FBgn0002787) 164 FBgn0035001 FBgn0035001 FBtr0072363 slik protein_coding CG8478-S2-modencode_R2_peak_698 chr2R 6993122 6993736 + 13 NA exon (FBgn0040765, exon 1 of 5) protein_coding-exon (FBgn0040765, exon 1 of 5) 892 FBgn0040765 FBgn0040765 FBtr0088210 luna protein_coding CG8478-S2-modencode_R2_peak_1240 chr3L 1006004 1006123 + 13 NA intron (FBgn0024277, intron 4 of 12) protein_coding-intron (FBgn0024277, intron 8 of 16) 1712 FBgn0024277 FBgn0024277 FBtr0072649 trio protein_coding CG8478-S2-modencode_R2_peak_1530 chr3L 11780550 11780703 + 13 NA exon (FBgn0015278, exon 3 of 5) protein_coding-exon (FBgn0015278, exon 3 of 5) 2487 FBgn0015278 FBgn0015278 FBtr0332055 Pi3K68D protein_coding CG8478-S2-modencode_R2_peak_1300 chr3L 3405143 3405334 + 13 NA intron (FBgn0014388, intron 1 of 1) protein_coding-intron (FBgn0014388, intron 1 of 1) 6949 FBgn0262260 FBgn0262260 FBtr0304360 mir-2282 pre_miRNA CG8478-S2-modencode_R2_peak_3172 chrX 14980042 14980398 + 13 NA promoter-TSS (FBgn0030612) protein_coding-promoter-TSS (FBgn0030612) 49 FBgn0030612 FBgn0030612 FBtr0073964 CG5599 protein_coding CG8478-S2-modencode_R2_peak_2177 chr3R 14271384 14271515 + 13 NA intron (FBgn0004652, intron 2 of 7) protein_coding-intron (FBgn0004652, intron 2 of 7) -34096 FBgn0038621 FBgn0038621 FBtr0083654 CG10864 protein_coding CG8478-S2-modencode_R2_peak_2398 chr3R 21954233 21954526 + 13 NA promoter-TSS (FBgn0051324) protein_coding-promoter-TSS (FBgn0051324) -147 FBgn0051324 FBgn0051324 FBtr0333926 CG31324 protein_coding CG8478-S2-modencode_R2_peak_2582 chrM 1758 1953 + 13 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1639 chr3L 17566951 17567065 + 13 NA intron (FBgn0000567, intron 5 of 7) protein_coding-intron (FBgn0000567, intron 5 of 7) -7746 FBgn0086080 FBgn0086080 FBtr0114356 snoRNA:Me28S-A576 snoRNA CG8478-S2-modencode_R2_peak_353 chr2L 16724055 16724261 + 13 NA TTS (FBgn0262438) pre_miRNA-TTS (FBgn0262438) 659 FBgn0262438 FBgn0262438 FBtr0304428 mir-1006 pre_miRNA CG8478-S2-modencode_R2_peak_887 chr2R 12099624 12099825 + 13 NA intron (FBgn0034091, intron 1 of 5) protein_coding-intron (FBgn0034091, intron 1 of 5) -4513 FBgn0050237 FBgn0050237 FBtr0087198 tRNA:CR30237 tRNA CG8478-S2-modencode_R2_peak_1773 chr3L 22903758 22903879 + 13 NA promoter-TSS (FBgn0037206) protein_coding-promoter-TSS (FBgn0037206) 227 FBgn0037206 FBgn0037206 FBtr0331397 CG12768 protein_coding CG8478-S2-modencode_R2_peak_792 chr2R 9387821 9388040 + 13 NA intron (FBgn0004638, intron 1 of 4) protein_coding-intron (FBgn0004638, intron 2 of 5) -2150 FBgn0033845 FBgn0033845 FBtr0087668 mars protein_coding CG8478-S2-modencode_R2_peak_2157 chr3R 13445510 13445888 + 13 NA promoter-TSS (FBgn0011945) tRNA-promoter-TSS (FBgn0011945) 16 FBgn0011945 FBgn0011945 FBtr0083469 tRNA:P:90Cb tRNA CG8478-S2-modencode_R2_peak_2406 chr3R 22085920 22085997 + 13 NA promoter-TSS (FBgn0000064) protein_coding-promoter-TSS (FBgn0000064) 1355 FBgn0000064 FBgn0000064 FBtr0085000 Ald protein_coding CG8478-S2-modencode_R2_peak_709 chr2R 7083395 7083617 + 13 NA intron (FBgn0003396, intron 2 of 7) protein_coding-intron (FBgn0003396, intron 2 of 7) 22198 FBgn0003396 FBgn0003396 FBtr0088100 shn protein_coding CG8478-S2-modencode_R2_peak_1900 chr3R 4983695 4983798 + 13 NA promoter-TSS (FBgn0003165) protein_coding-promoter-TSS (FBgn0003165) -74 FBgn0003165 FBgn0003165 FBtr0305197 pum protein_coding CG8478-S2-modencode_R2_peak_2294 chr3R 19157525 19157807 + 13 NA intron (FBgn0003118, intron 3 of 8) protein_coding-intron (FBgn0003118, intron 3 of 8) 14218 FBgn0003118 FBgn0003118 FBtr0089715 pnt protein_coding CG8478-S2-modencode_R2_peak_188 chr2L 8231013 8231179 + 13 NA promoter-TSS (FBgn0032006) protein_coding-promoter-TSS (FBgn0032006) 8782 FBgn0032006 FBgn0032006 FBtr0303109 Pvr protein_coding CG8478-S2-modencode_R2_peak_1586 chr3L 15527964 15528202 + 13 NA promoter-TSS (FBgn0004396) protein_coding-promoter-TSS (FBgn0004396) -431 FBgn0004396 FBgn0004396 FBtr0075557 CrebA protein_coding CG8478-S2-modencode_R2_peak_2061 chr3R 10914627 10914833 + 13 NA intron (FBgn0038286, intron 1 of 4) protein_coding-intron (FBgn0038286, intron 1 of 4) 6603 FBgn0038286 FBgn0038286 FBtr0113236 CG6966 protein_coding CG8478-S2-modencode_R2_peak_1113 chr2R 17600713 17601032 + 13 NA promoter-TSS (FBgn0004362) protein_coding-promoter-TSS (FBgn0004362) 36 FBgn0004362 FBgn0004362 FBtr0301410 HmgD protein_coding CG8478-S2-modencode_R2_peak_2397 chr3R 21949953 21950109 + 13 NA intron (FBgn0051324, intron 3 of 4) protein_coding-intron (FBgn0051324, intron 1 of 2) -2350 FBgn0039413 FBgn0039413 FBtr0273389 CG14556 protein_coding CG8478-S2-modencode_R2_peak_199 chr2L 8423056 8423333 + 13 NA intron (FBgn0027932, intron 1 of 4) protein_coding-intron (FBgn0027932, intron 1 of 5) 7504 FBgn0027932 FBgn0027932 FBtr0079666 Akap200 protein_coding CG8478-S2-modencode_R2_peak_86 chr2L 3476660 3476883 + 13 NA promoter-TSS (FBgn0264549) ncRNA-promoter-TSS (FBgn0264549) -80 FBgn0264549 FBgn0264549 FBtr0333249 CR43928 ncRNA CG8478-S2-modencode_R2_peak_187 chr2L 8230527 8230716 + 13 NA promoter-TSS (FBgn0032006) protein_coding-promoter-TSS (FBgn0032006) 9257 FBgn0032006 FBgn0032006 FBtr0303109 Pvr protein_coding CG8478-S2-modencode_R2_peak_2496 chr3R 26212760 26212835 + 13 NA promoter-TSS (FBgn0015221) protein_coding-promoter-TSS (FBgn0015221) 544 FBgn0015222 FBgn0015222 FBtr0332170 Fer1HCH protein_coding CG8478-S2-modencode_R2_peak_1613 chr3L 16637777 16637968 + 13 NA intron (FBgn0000017, intron 1 of 8) protein_coding-intron (FBgn0000017, intron 1 of 7) 3110 FBgn0000017 FBgn0000017 FBtr0330136 Abl protein_coding CG8478-S2-modencode_R2_peak_577 chr2R 4558648 4558718 + 13 NA promoter-TSS (FBgn0263120) protein_coding-promoter-TSS (FBgn0263120) -4392 FBgn0263120 FBgn0263120 FBtr0100431 Acsl protein_coding CG8478-S2-modencode_R2_peak_1682 chr3L 18391538 18391608 + 13 NA promoter-TSS (FBgn0011706) protein_coding-promoter-TSS (FBgn0011706) -38 FBgn0011706 FBgn0011706 FBtr0075120 rpr protein_coding CG8478-S2-modencode_R2_peak_669 chr2R 6756589 6756817 + 13 NA intron (FBgn0050015, intron 1 of 7) protein_coding-intron (FBgn0050015, intron 1 of 7) 6194 FBgn0050016 FBgn0050016 FBtr0088241 CG30016 protein_coding CG8478-S2-modencode_R2_peak_2385 chr3R 21924842 21924950 + 13 NA promoter-TSS (FBgn0039411) protein_coding-promoter-TSS (FBgn0039411) -463 FBgn0039411 FBgn0039411 FBtr0113293 dys protein_coding CG8478-S2-modencode_R2_peak_122 chr2L 5297128 5297309 + 13 NA Intergenic Intergenic -8504 FBgn0016076 FBgn0016076 FBtr0300020 vri protein_coding CG8478-S2-modencode_R2_peak_2466 chr3R 25591070 25591419 + 13 NA Intergenic Intergenic 15209 FBgn0039694 FBgn0039694 FBtr0085538 fig protein_coding CG8478-S2-modencode_R2_peak_1338 chr3L 4221767 4222030 + 13 NA exon (FBgn0052252, exon 2 of 2) ncRNA-exon (FBgn0052252, exon 2 of 2) 836 FBgn0052252 FBgn0052252 FBtr0307363 CR32252 ncRNA CG8478-S2-modencode_R2_peak_1211 chr3L 611528 611959 + 13 NA Intergenic Intergenic 4903 FBgn0261636 FBgn0261636 FBtr0303002 CG42719 protein_coding CG8478-S2-modencode_R2_peak_127 chr2L 5340825 5341515 + 13 NA intron (FBgn0031703, intron 1 of 2) protein_coding-intron (FBgn0031703, intron 1 of 2) -1151 FBgn0016920 FBgn0016920 FBtr0079074 nompC protein_coding CG8478-S2-modencode_R2_peak_659 chr2R 6489966 6490739 + 13 NA intron (FBgn0263102, intron 1 of 6) protein_coding-intron (FBgn0263102, intron 3 of 9) -19356 FBgn0033538 FBgn0033538 FBtr0113063 CG11883 protein_coding CG8478-S2-modencode_R2_peak_3135 chrX 13217759 13217853 + 13 NA intron (FBgn0085388, intron 1 of 5) protein_coding-intron (FBgn0085388, intron 1 of 4) 2466 FBgn0085388 FBgn0085388 FBtr0112575 IP3K2 protein_coding CG8478-S2-modencode_R2_peak_1962 chr3R 5924014 5924526 + 13 NA exon (FBgn0263413, exon 1 of 1) ncRNA-exon (FBgn0263413, exon 1 of 1) -1532 FBgn0262419 FBgn0262419 FBtr0304362 mir-277 pre_miRNA CG8478-S2-modencode_R2_peak_1526 chr3L 11555056 11555277 + 13 NA promoter-TSS (FBgn0036173) protein_coding-promoter-TSS (FBgn0036173) 70 FBgn0036173 FBgn0036173 FBtr0290024 CG7394 protein_coding CG8478-S2-modencode_R2_peak_2280 chr3R 19026894 19027306 + 13 NA promoter-TSS (FBgn0262975) protein_coding-promoter-TSS (FBgn0262975) 2656 FBgn0011596 FBgn0011596 FBtr0084399 fzo protein_coding CG8478-S2-modencode_R2_peak_197 chr2L 8422026 8422144 + 13 NA intron (FBgn0027932, intron 1 of 4) protein_coding-intron (FBgn0027932, intron 1 of 5) 6395 FBgn0027932 FBgn0027932 FBtr0079666 Akap200 protein_coding CG8478-S2-modencode_R2_peak_1905 chr3R 5055791 5055984 + 13 NA intron (FBgn0003165, intron 3 of 12) protein_coding-intron (FBgn0003165, intron 3 of 12) 10102 FBgn0000412 FBgn0000412 FBtr0301524 D1 protein_coding CG8478-S2-modencode_R2_peak_128 chr2L 5342226 5342486 + 13 NA promoter-TSS (FBgn0031703) protein_coding-promoter-TSS (FBgn0031703) -7 FBgn0031703 FBgn0031703 FBtr0079077 CG12512 protein_coding CG8478-S2-modencode_R2_peak_1127 chr2R 18185415 18185533 + 13 NA TTS (FBgn0034718) protein_coding-TTS (FBgn0034718) 4552 FBgn0034717 FBgn0034717 FBtr0071812 CG5819 protein_coding CG8478-S2-modencode_R2_peak_1662 chr3L 17961667 17961954 + 13 NA intron (FBgn0000568, intron 5 of 7) protein_coding-intron (FBgn0000568, intron 3 of 5) 34368 FBgn0086081 FBgn0086081 FBtr0114357 snoRNA:Me28S-A30 snoRNA CG8478-S2-modencode_R2_peak_958 chr2R 14194518 14194652 + 13 NA intron (FBgn0010575, intron 1 of 10) protein_coding-intron (FBgn0010575, intron 1 of 11) -3103 FBgn0034327 FBgn0034327 FBtr0307186 CG14505 protein_coding CG8478-S2-modencode_R2_peak_901 chr2R 12715044 12715122 + 13 NA TTS (FBgn0085488) protein_coding-TTS (FBgn0085488) 706 FBgn0085489 FBgn0085489 FBtr0112766 CG34460 protein_coding CG8478-S2-modencode_R2_peak_1496 chr3L 10844795 10844946 + 13 NA Intergenic Intergenic -6634 FBgn0026160 FBgn0026160 FBtr0076268 tna protein_coding CG8478-S2-modencode_R2_peak_501 chr2R 2675498 2675714 + 13 NA intron (FBgn0085421, intron 4 of 19) protein_coding-intron (FBgn0085421, intron 1 of 16) -6610 FBgn0000473 FBgn0000473 FBtr0086133 Cyp6a2 protein_coding CG8478-S2-modencode_R2_peak_1013 chr2R 14716483 14716657 + 13 NA intron (FBgn0034396, intron 1 of 5) protein_coding-intron (FBgn0034396, intron 1 of 5) 634 FBgn0034396 FBgn0034396 FBtr0086630 CG15097 protein_coding CG8478-S2-modencode_R2_peak_483 chr2R 2101749 2101899 + 13 NA promoter-TSS (FBgn0263144) protein_coding-promoter-TSS (FBgn0263144) -201 FBgn0021847 FBgn0021847 FBtr0305967 l(2)k14710 protein_coding CG8478-S2-modencode_R2_peak_3017 chrX 10369979 10370413 + 13 NA intron (FBgn0030206, intron 3 of 4) protein_coding-intron (FBgn0030206, intron 4 of 5) 1447 FBgn0030206 FBgn0030206 FBtr0307487 CG2889 protein_coding CG8478-S2-modencode_R2_peak_278 chr2L 12490810 12490936 + 13 NA intron (FBgn0259176, intron 5 of 6) protein_coding-intron (FBgn0259176, intron 1 of 2) 6460 FBgn0051858 FBgn0051858 FBtr0080381 t-cup protein_coding CG8478-S2-modencode_R2_peak_2417 chr3R 22895797 22896230 + 13 NA promoter-TSS (FBgn0003495) protein_coding-promoter-TSS (FBgn0003495) -221 FBgn0003495 FBgn0003495 FBtr0085146 spz protein_coding CG8478-S2-modencode_R2_peak_602 chr2R 5830383 5830506 + 13 NA exon (FBgn0011656, exon 1 of 11) protein_coding-exon (FBgn0011656, exon 1 of 11) 15906 FBgn0011656 FBgn0011656 FBtr0088446 Mef2 protein_coding CG8478-S2-modencode_R2_peak_331 chr2L 15745668 15745839 + 13 NA intron (FBgn0010382, intron 1 of 6) protein_coding-intron (FBgn0010382, intron 1 of 5) 856 FBgn0010382 FBgn0010382 FBtr0080777 CycE protein_coding CG8478-S2-modencode_R2_peak_1920 chr3R 5184584 5184670 + 13 NA exon (FBgn0263749, exon 5 of 5) protein_coding-exon (FBgn0263749, exon 5 of 5) 2949 FBgn0263750 FBgn0263750 FBtr0310402 CG43675 protein_coding CG8478-S2-modencode_R2_peak_304 chr2L 13205914 13206120 + 13 NA intron (FBgn0032482, intron 1 of 6) protein_coding-intron (FBgn0032482, intron 1 of 6) -2722 FBgn0032481 FBgn0032481 FBtr0080488 CG16972 protein_coding CG8478-S2-modencode_R2_peak_1228 chr3L 650201 650617 + 13 NA exon (FBgn0035147, exon 3 of 4) protein_coding-exon (FBgn0035147, exon 3 of 4) 1635 FBgn0035147 FBgn0035147 FBtr0306917 Gale protein_coding CG8478-S2-modencode_R2_peak_3295 chrX 20341791 20341868 + 13 NA exon (FBgn0031118, exon 14 of 14) protein_coding-exon (FBgn0031118, exon 14 of 14) 3122 FBgn0031117 FBgn0031117 FBtr0077310 CG1702 protein_coding CG8478-S2-modencode_R2_peak_3258 chrX 19047759 19048230 + 13 NA promoter-TSS (FBgn0261461) protein_coding-promoter-TSS (FBgn0261461) -7217 FBgn0261461 FBgn0261461 FBtr0299625 RhoGAP18B protein_coding CG8478-S2-modencode_R2_peak_1167 chr2R 19945552 19945730 + 13 NA promoter-TSS (FBgn0034965) protein_coding-promoter-TSS (FBgn0034965) 294 FBgn0034967 FBgn0034967 FBtr0072173 eIF-5A protein_coding CG8478-S2-modencode_R2_peak_1760 chr3L 22360009 22360283 + 13 NA intron (FBgn0004449, intron 1 of 11) protein_coding-intron (FBgn0004449, intron 1 of 8) 37268 FBgn0052450 FBgn0052450 FBtr0078501 CG32450 protein_coding CG8478-S2-modencode_R2_peak_766 chr2R 8759497 8759618 + 13 NA promoter-TSS (FBgn0263446) ncRNA-promoter-TSS (FBgn0263446) -704 FBgn0263446 FBgn0263446 FBtr0309292 CR43469 ncRNA CG8478-S2-modencode_R2_peak_2412 chr3R 22696975 22697167 + 13 NA TTS (FBgn0004903) protein_coding-TTS (FBgn0004903) 667 FBgn0026562 FBgn0026562 FBtr0085094 BM-40-SPARC protein_coding CG8478-S2-modencode_R2_peak_972 chr2R 14285984 14286151 + 13 NA promoter-TSS (FBgn0063498) protein_coding-promoter-TSS (FBgn0063498) 169 FBgn0034335 FBgn0034335 FBtr0086669 GstE1 protein_coding CG8478-S2-modencode_R2_peak_1499 chr3L 10848376 10848700 + 13 NA Intergenic Intergenic -2966 FBgn0026160 FBgn0026160 FBtr0076268 tna protein_coding CG8478-S2-modencode_R2_peak_1668 chr3L 17992747 17992952 + 13 NA promoter-TSS (FBgn0000568) protein_coding-promoter-TSS (FBgn0000568) 3329 FBgn0086081 FBgn0086081 FBtr0114357 snoRNA:Me28S-A30 snoRNA CG8478-S2-modencode_R2_peak_2067 chr3R 10951586 10951779 + 13 NA intron (FBgn0261859, intron 1 of 9) protein_coding-intron (FBgn0261859, intron 1 of 9) 4832 FBgn0262315 FBgn0262315 FBtr0304477 mir-2493 pre_miRNA CG8478-S2-modencode_R2_peak_2477 chr3R 25925080 25925208 + 13 NA intron (FBgn0015542, intron 7 of 7) protein_coding-intron (FBgn0015542, intron 7 of 11) 23841 FBgn0040625 FBgn0040625 FBtr0302312 CG18682 protein_coding CG8478-S2-modencode_R2_peak_236 chr2L 9449232 9449436 + 13 NA promoter-TSS (FBgn0002973) protein_coding-promoter-TSS (FBgn0002973) -496 FBgn0002973 FBgn0002973 FBtr0079822 numb protein_coding CG8478-S2-modencode_R2_peak_1588 chr3L 15529500 15529593 + 13 NA exon (FBgn0004396, exon 1 of 6) protein_coding-exon (FBgn0004396, exon 1 of 6) 1032 FBgn0004396 FBgn0004396 FBtr0075557 CrebA protein_coding CG8478-S2-modencode_R2_peak_2756 chrX 3583168 3583266 + 13 NA promoter-TSS (FBgn0023215) protein_coding-promoter-TSS (FBgn0023215) -181 FBgn0023215 FBgn0023215 FBtr0301825 Mnt protein_coding CG8478-S2-modencode_R2_peak_2795 chrX 4219012 4219159 + 13 NA intron (FBgn0262738, intron 1 of 14) protein_coding-intron (FBgn0262738, intron 1 of 14) 2426 FBgn0262738 FBgn0262738 FBtr0100670 norpA protein_coding CG8478-S2-modencode_R2_peak_1916 chr3R 5176547 5177081 + 13 NA intron (FBgn0263749, intron 2 of 5) protein_coding-intron (FBgn0263749, intron 1 of 4) -3176 FBgn0086053 FBgn0086053 FBtr0114329 snoRNA:Me18S-G1358a snoRNA CG8478-S2-modencode_R2_peak_2284 chr3R 19119967 19120095 + 13 NA exon (FBgn0003118, exon 1 of 4) protein_coding-exon (FBgn0003118, exon 1 of 4) -4120 FBgn0039071 FBgn0039071 FBtr0084382 CG4434 protein_coding CG8478-S2-modencode_R2_peak_2716 chrX 2659479 2659746 + 13 NA intron (FBgn0028369, intron 2 of 11) protein_coding-intron (FBgn0028369, intron 2 of 12) -14163 FBgn0263505 FBgn0263505 FBtr0309525 CR43494 ncRNA CG8478-S2-modencode_R2_peak_3029 chrX 10430959 10431260 + 13 NA intron (FBgn0085443, intron 3 of 10) protein_coding-intron (FBgn0085443, intron 3 of 9) 29515 FBgn0030215 FBgn0030215 FBtr0310297 CG15296 protein_coding CG8478-S2-modencode_R2_peak_566 chr2R 4130163 4130298 + 13 NA Intergenic Intergenic 4866 FBgn0013726 FBgn0013726 FBtr0088793 pnut protein_coding CG8478-S2-modencode_R2_peak_809 chr2R 9851819 9852055 + 13 NA promoter-TSS (FBgn0013770) protein_coding-promoter-TSS (FBgn0013770) -236 FBgn0261975 FBgn0261975 FBtr0304022 CG42806 protein_coding CG8478-S2-modencode_R2_peak_880 chr2R 12050088 12050208 + 13 NA intron (FBgn0034083, intron 1 of 8) protein_coding-intron (FBgn0034083, intron 1 of 8) -3849 FBgn0034082 FBgn0034082 FBtr0087250 CG10734 protein_coding CG8478-S2-modencode_R2_peak_1510 chr3L 11235067 11235183 + 13 NA Intergenic Intergenic -6087 FBgn0036150 FBgn0036150 FBtr0076185 Ir68a protein_coding CG8478-S2-modencode_R2_peak_1163 chr2R 19868758 19868934 + 13 NA intron (FBgn0005612, intron 1 of 1) protein_coding-intron (FBgn0005612, intron 1 of 1) 1428 FBgn0005612 FBgn0005612 FBtr0072158 Sox14 protein_coding CG8478-S2-modencode_R2_peak_948 chr2R 14014355 14014567 + 13 NA exon (FBgn0028983, exon 1 of 2) protein_coding-exon (FBgn0028983, exon 1 of 2) 651 FBgn0028983 FBgn0028983 FBtr0086733 Spn6 protein_coding CG8478-S2-modencode_R2_peak_1571 chr3L 14759176 14759376 + 13 NA exon (FBgn0036446, exon 4 of 4) protein_coding-exon (FBgn0036446, exon 4 of 4) 3107 FBgn0036447 FBgn0036447 FBtr0075701 CG17173 protein_coding CG8478-S2-modencode_R2_peak_581 chr2R 5191051 5191175 + 13 NA TTS (FBgn0033402) protein_coding-TTS (FBgn0033402) 5114 FBgn0033402 FBgn0033402 FBtr0088598 Myd88 protein_coding CG8478-S2-modencode_R2_peak_2362 chr3R 21299011 21299146 + 13 NA promoter-TSS (FBgn0039335) protein_coding-promoter-TSS (FBgn0039335) -160 FBgn0039335 FBgn0039335 FBtr0084835 Vps33B protein_coding CG8478-S2-modencode_R2_peak_1509 chr3L 11234426 11234596 + 13 NA Intergenic Intergenic -5473 FBgn0036150 FBgn0036150 FBtr0076185 Ir68a protein_coding CG8478-S2-modencode_R2_peak_1880 chr3R 4631826 4632238 + 13 NA promoter-TSS (FBgn0037634) protein_coding-promoter-TSS (FBgn0037634) -14 FBgn0037634 FBgn0037634 FBtr0081919 CG8359 protein_coding CG8478-S2-modencode_R2_peak_843 chr2R 10852065 10852456 + 13 NA promoter-TSS (FBgn0033987) protein_coding-promoter-TSS (FBgn0033987) -925 FBgn0033987 FBgn0033987 FBtr0087411 ckn protein_coding CG8478-S2-modencode_R2_peak_116 chr2L 5043737 5043871 + 13 NA promoter-TSS (FBgn0031673) protein_coding-promoter-TSS (FBgn0031673) 534 FBgn0031674 FBgn0031674 FBtr0079008 CG31919 protein_coding CG8478-S2-modencode_R2_peak_2058 chr3R 10557555 10557813 + 13 NA promoter-TSS (FBgn0038256) protein_coding-promoter-TSS (FBgn0038256) -2884 FBgn0038256 FBgn0038256 FBtr0333277 CG7530 protein_coding CG8478-S2-modencode_R2_peak_1386 chr3L 7427212 7427476 + 13 NA exon (FBgn0014011, exon 1 of 1) protein_coding-exon (FBgn0014011, exon 1 of 1) 946 FBgn0014011 FBgn0014011 FBtr0076867 Rac2 protein_coding CG8478-S2-modencode_R2_peak_303 chr2L 13098542 13098688 + 13 NA Intergenic Intergenic -8256 FBgn0032470 FBgn0032470 FBtr0301366 CG5142 protein_coding CG8478-S2-modencode_R2_peak_2603 chrU 5509964 5510065 + 13 NA NA NA NA NA CG8478-S2-modencode_R2_peak_2809 chrX 4803804 4804195 + 13 NA intron (FBgn0052772, intron 1 of 5) protein_coding-intron (FBgn0052772, intron 1 of 5) 818 FBgn0052772 FBgn0052772 FBtr0300997 CG32772 protein_coding CG8478-S2-modencode_R2_peak_2490 chr3R 26142916 26143069 + 13 NA intron (FBgn0010113, intron 2 of 5) protein_coding-intron (FBgn0010113, intron 2 of 5) -10633 FBgn0085329 FBgn0085329 FBtr0305269 CG34300 protein_coding CG8478-S2-modencode_R2_peak_1585 chr3L 15526808 15526967 + 13 NA Intergenic Intergenic -1627 FBgn0004396 FBgn0004396 FBtr0075557 CrebA protein_coding CG8478-S2-modencode_R2_peak_1237 chr3L 841061 841396 + 13 NA promoter-TSS (FBgn0035167) protein_coding-promoter-TSS (FBgn0035167) 132 FBgn0035166 FBgn0035166 FBtr0331402 CG13902 protein_coding CG8478-S2-modencode_R2_peak_2214 chr3R 16370957 16371138 + 13 NA intron (FBgn0016917, intron 1 of 8) protein_coding-intron (FBgn0016917, intron 1 of 7) 5805 FBgn0016917 FBgn0016917 FBtr0100457 Stat92E protein_coding CG8478-S2-modencode_R2_peak_1711 chr3L 19133666 19133873 + 13 NA TTS (FBgn0016797) protein_coding-TTS (FBgn0016797) -1694 FBgn0036851 FBgn0036851 FBtr0330092 CG14082 protein_coding CG8478-S2-modencode_R2_peak_185 chr2L 8227469 8227643 + 13 NA intron (FBgn0032006, intron 4 of 17) protein_coding-intron (FBgn0032006, intron 4 of 17) -6815 FBgn0032005 FBgn0032005 FBtr0306170 Snx6 protein_coding CG8478-S2-modencode_R2_peak_2134 chr3R 12275122 12275631 + 13 NA intron (FBgn0044826, intron 1 of 1) protein_coding-intron (FBgn0044826, intron 1 of 1) 4174 FBgn0044826 FBgn0044826 FBtr0083312 Pak3 protein_coding CG8478-S2-modencode_R2_peak_456 chr2R 1598804 1599065 + 13 NA intron (FBgn0000099, intron 1 of 4) protein_coding-intron (FBgn0000099, intron 4 of 7) 5620 FBgn0000099 FBgn0000099 FBtr0300504 ap protein_coding CG8478-S2-modencode_R2_peak_3222 chrX 16861699 16861851 + 13 NA exon (FBgn0030809, exon 2 of 11) protein_coding-exon (FBgn0030809, exon 2 of 11) 907 FBgn0030809 FBgn0030809 FBtr0308839 CG9086 protein_coding CG8478-S2-modencode_R2_peak_2486 chr3R 26123370 26123564 + 13 NA intron (FBgn0010113, intron 1 of 5) protein_coding-intron (FBgn0010113, intron 1 of 5) 8892 FBgn0085329 FBgn0085329 FBtr0305269 CG34300 protein_coding CG8478-S2-modencode_R2_peak_2200 chr3R 15394595 15394824 + 13 NA promoter-TSS (FBgn0260003) protein_coding-promoter-TSS (FBgn0260003) -17209 FBgn0065080 FBgn0065080 FBtr0091611 snoRNA:Me18S-A1374 snoRNA CG8478-S2-modencode_R2_peak_1169 chr2R 19956314 19956530 + 13 NA promoter-TSS (FBgn0034971) protein_coding-promoter-TSS (FBgn0034971) -11 FBgn0034971 FBgn0034971 FBtr0072179 CG3209 protein_coding CG8478-S2-modencode_R2_peak_435 chr2L 22148874 22149202 + 13 NA intron (FBgn0261802, intron 5 of 6) protein_coding-intron (FBgn0261802, intron 5 of 7) -2716 FBgn0083973 FBgn0083973 FBtr0303249 CG34137 protein_coding CG8478-S2-modencode_R2_peak_1769 chr3L 22827995 22828198 + 13 NA intron (FBgn0027339, intron 1 of 6) protein_coding-intron (FBgn0027339, intron 1 of 6) -1608 FBgn0027339 FBgn0027339 FBtr0100184 jim protein_coding CG8478-S2-modencode_R2_peak_1945 chr3R 5860995 5861147 + 13 NA intron (FBgn0053208, intron 2 of 22) protein_coding-intron (FBgn0053208, intron 3 of 7) 7546 FBgn0053208 FBgn0053208 FBtr0273185 Mical protein_coding CG8478-S2-modencode_R2_peak_1047 chr2R 15312954 15313282 + 13 NA promoter-TSS (FBgn0263391) protein_coding-promoter-TSS (FBgn0263391) 540 FBgn0012051 FBgn0012051 FBtr0086530 CalpA protein_coding CG8478-S2-modencode_R2_peak_2607 chrU 6291443 6291565 + 13 NA NA NA NA NA CG8478-S2-modencode_R2_peak_350 chr2L 16637269 16637552 + 13 NA intron (FBgn0259735, intron 3 of 5) protein_coding-intron (FBgn0259735, intron 2 of 4) -19705 FBgn0259735 FBgn0259735 FBtr0300005 CG42389 protein_coding CG8478-S2-modencode_R2_peak_217 chr2L 8718156 8718516 + 13 NA intron (FBgn0003209, intron 1 of 8) protein_coding-intron (FBgn0003209, intron 1 of 8) 12764 FBgn0032061 FBgn0032061 FBtr0079731 CG9314 protein_coding CG8478-S2-modencode_R2_peak_1180 chr2R 20772237 20772529 + 13 NA TTS (FBgn0085442) protein_coding-TTS (FBgn0085442) 2229 FBgn0085442 FBgn0085442 FBtr0305056 NKAIN protein_coding CG8478-S2-modencode_R2_peak_1850 chr3R 3015878 3015996 + 13 NA exon (FBgn0086372, exon 2 of 11) protein_coding-exon (FBgn0086372, exon 2 of 11) 3214 FBgn0086372 FBgn0086372 FBtr0305153 lap protein_coding CG8478-S2-modencode_R2_peak_2768 chrX 3641916 3642137 + 13 NA intron (FBgn0086899, intron 1 of 9) protein_coding-intron (FBgn0086899, intron 1 of 9) -24647 FBgn0086899 FBgn0086899 FBtr0070596 tlk protein_coding CG8478-S2-modencode_R2_peak_860 chr2R 11641452 11641562 + 13 NA intron (FBgn0050089, intron 3 of 6) protein_coding-intron (FBgn0050089, intron 3 of 6) 26604 FBgn0050089 FBgn0050089 FBtr0087285 CG30089 protein_coding CG8478-S2-modencode_R2_peak_627 chr2R 6326414 6326541 + 13 NA promoter-TSS (FBgn0001122) protein_coding-promoter-TSS (FBgn0001122) -1584 FBgn0033523 FBgn0033523 FBtr0088314 CG12895 protein_coding CG8478-S2-modencode_R2_peak_592 chr2R 5570958 5571270 + 13 NA exon (FBgn0033438, exon 1 of 8) protein_coding-exon (FBgn0033438, exon 1 of 8) 242 FBgn0033438 FBgn0033438 FBtr0088501 Mmp2 protein_coding CG8478-S2-modencode_R2_peak_82 chr2L 3159385 3159557 + 13 NA promoter-TSS (FBgn0260817) protein_coding-promoter-TSS (FBgn0260817) -479 FBgn0260817 FBgn0260817 FBtr0077574 gkt protein_coding CG8478-S2-modencode_R2_peak_2562 chr4 452362 452575 + 13 NA Intergenic Intergenic 5775 FBgn0263385 FBgn0263385 FBtr0309072 CR43437 ncRNA CG8478-S2-modencode_R2_peak_1889 chr3R 4716239 4716317 + 13 NA intron (FBgn0262614, intron 1 of 13) protein_coding-intron (FBgn0262614, intron 1 of 13) 27623 FBgn0053551 FBgn0053551 FBtr0091521 tRNA:R:85Cb tRNA CG8478-S2-modencode_R2_peak_134 chr2L 5546743 5546816 + 13 NA promoter-TSS (FBgn0031717) protein_coding-promoter-TSS (FBgn0031717) -424 FBgn0031717 FBgn0031717 FBtr0307064 Oscillin protein_coding CG8478-S2-modencode_R2_peak_1451 chr3L 9444922 9445203 + 13 NA promoter-TSS (FBgn0052038) protein_coding-promoter-TSS (FBgn0052038) 86 FBgn0052038 FBgn0052038 FBtr0076462 CG32038 protein_coding CG8478-S2-modencode_R2_peak_2557 chr4 103764 104173 + 13 NA intron (FBgn0085432, intron 5 of 11) protein_coding-intron (FBgn0085432, intron 6 of 12) 13681 FBgn0085432 FBgn0085432 FBtr0112657 pan protein_coding CG8478-S2-modencode_R2_peak_911 chr2R 12901219 12901526 + 13 NA exon (FBgn0034180, exon 3 of 14) protein_coding-exon (FBgn0034180, exon 3 of 14) 2019 FBgn0034180 FBgn0034180 FBtr0114629 Ehbp1 protein_coding CG8478-S2-modencode_R2_peak_500 chr2R 2650951 2651125 + 13 NA exon (FBgn0085421, exon 15 of 17) protein_coding-exon (FBgn0085421, exon 15 of 17) -4634 FBgn0033101 FBgn0033101 FBtr0086134 CG9436 protein_coding CG8478-S2-modencode_R2_peak_3053 chrX 11093437 11093539 + 13 NA Intergenic Intergenic -2814 FBgn0030280 FBgn0030280 FBtr0073446 CG11106 protein_coding CG8478-S2-modencode_R2_peak_704 chr2R 7063553 7063677 + 13 NA intron (FBgn0003396, intron 1 of 7) protein_coding-intron (FBgn0003396, intron 1 of 7) 2307 FBgn0003396 FBgn0003396 FBtr0088100 shn protein_coding CG8478-S2-modencode_R2_peak_1048 chr2R 15337845 15337965 + 13 NA promoter-TSS (FBgn0003887) protein_coding-promoter-TSS (FBgn0003887) -829 FBgn0003887 FBgn0003887 FBtr0086537 betaTub56D protein_coding CG8478-S2-modencode_R2_peak_1157 chr2R 19603575 19603761 + 13 NA intron (FBgn0034897, intron 2 of 9) protein_coding-intron (FBgn0034897, intron 2 of 9) 2243 FBgn0034897 FBgn0034897 FBtr0113114 Sesn protein_coding CG8478-S2-modencode_R2_peak_2166 chr3R 13544622 13544710 + 13 NA promoter-TSS (FBgn0261987) protein_coding-promoter-TSS (FBgn0261987) -508 FBgn0261987 FBgn0261987 FBtr0083508 Pxt protein_coding CG8478-S2-modencode_R2_peak_3032 chrX 10437021 10437219 + 13 NA intron (FBgn0085443, intron 3 of 10) protein_coding-intron (FBgn0085443, intron 3 of 9) 23504 FBgn0030215 FBgn0030215 FBtr0310297 CG15296 protein_coding CG8478-S2-modencode_R2_peak_674 chr2R 6957020 6957155 + 13 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -16004 FBgn0262817 FBgn0262817 FBtr0306049 CG43188 protein_coding CG8478-S2-modencode_R2_peak_637 chr2R 6419470 6419911 + 13 NA exon (FBgn0005630, exon 4 of 6) protein_coding-exon (FBgn0005630, exon 4 of 6) 2893 FBgn0005630 FBgn0005630 FBtr0089362 lola protein_coding CG8478-S2-modencode_R2_peak_1022 chr2R 15052021 15052429 + 13 NA intron (FBgn0034420, intron 1 of 14) protein_coding-intron (FBgn0034420, intron 1 of 14) -5420 FBgn0034420 FBgn0034420 FBtr0290318 CG10737 protein_coding CG8478-S2-modencode_R2_peak_2619 chrUextra 3204765 3204872 + 13 NA NA NA NA NA CG8478-S2-modencode_R2_peak_966 chr2R 14237684 14237820 + 13 NA intron (FBgn0010575, intron 1 of 10) protein_coding-intron (FBgn0010575, intron 1 of 11) 7049 FBgn0010575 FBgn0010575 FBtr0329996 sbb protein_coding CG8478-S2-modencode_R2_peak_2133 chr3R 12274654 12274809 + 13 NA intron (FBgn0044826, intron 1 of 1) protein_coding-intron (FBgn0044826, intron 1 of 1) 4819 FBgn0044826 FBgn0044826 FBtr0083312 Pak3 protein_coding CG8478-S2-modencode_R2_peak_1725 chr3L 20122268 20122346 + 13 NA promoter-TSS (FBgn0005198) protein_coding-promoter-TSS (FBgn0005198) 26 FBgn0005198 FBgn0005198 FBtr0332690 gig protein_coding CG8478-S2-modencode_R2_peak_1866 chr3R 3945037 3945191 + 13 NA intron (FBgn0243512, intron 3 of 3) protein_coding-intron (FBgn0243512, intron 3 of 3) -3307 FBgn0037549 FBgn0037549 FBtr0113205 CG7878 protein_coding CG8478-S2-modencode_R2_peak_3039 chrX 10633852 10634014 + 13 NA intron (FBgn0052676, intron 1 of 3) protein_coding-intron (FBgn0052676, intron 1 of 3) -4602 FBgn0003204 FBgn0003204 FBtr0071496 ras protein_coding CG8478-S2-modencode_R2_peak_522 chr2R 3453945 3454313 + 13 NA promoter-TSS (FBgn0033194) protein_coding-promoter-TSS (FBgn0033194) 111 FBgn0004132 FBgn0004132 FBtr0088953 boca protein_coding CG8478-S2-modencode_R2_peak_994 chr2R 14539398 14539907 + 13 NA intron (FBgn0034371, intron 1 of 5) protein_coding-intron (FBgn0034371, intron 1 of 6) 627 FBgn0034371 FBgn0034371 FBtr0086658 SP2637 protein_coding CG8478-S2-modencode_R2_peak_697 chr2R 6992638 6992784 + 13 NA intron (FBgn0040765, intron 1 of 4) protein_coding-intron (FBgn0040765, intron 1 of 4) 1610 FBgn0040765 FBgn0040765 FBtr0088210 luna protein_coding CG8478-S2-modencode_R2_peak_275 chr2L 12482984 12483164 + 13 NA exon (FBgn0259176, exon 1 of 3) protein_coding-exon (FBgn0259176, exon 1 of 3) 14259 FBgn0051858 FBgn0051858 FBtr0080381 t-cup protein_coding CG8478-S2-modencode_R2_peak_508 chr2R 2901849 2902063 + 13 NA intron (FBgn0029506, intron 2 of 4) protein_coding-intron (FBgn0029506, intron 2 of 4) 2195 FBgn0029506 FBgn0029506 FBtr0086180 Tsp42Ee protein_coding CG8478-S2-modencode_R2_peak_1194 chr3L 199306 199438 + 13 NA promoter-TSS (FBgn0035107) protein_coding-promoter-TSS (FBgn0035107) 390 FBgn0035106 FBgn0035106 FBtr0305548 rno protein_coding CG8478-S2-modencode_R2_peak_1544 chr3L 12797334 12797580 + 13 NA exon (FBgn0260945, exon 1 of 12) protein_coding-exon (FBgn0260945, exon 1 of 12) 759 FBgn0260945 FBgn0260945 FBtr0300561 Atg1 protein_coding CG8478-S2-modencode_R2_peak_529 chr2R 3509200 3509325 + 13 NA Intergenic Intergenic -1046 FBgn0033196 FBgn0033196 FBtr0088950 CG1358 protein_coding CG8478-S2-modencode_R2_peak_318 chr2L 14012156 14012498 + 13 NA Intergenic Intergenic -1420 FBgn0027348 FBgn0027348 FBtr0080590 bgm protein_coding CG8478-S2-modencode_R2_peak_1755 chr3L 21762962 21763068 + 13 NA promoter-TSS (FBgn0037133) protein_coding-promoter-TSS (FBgn0037133) 100 FBgn0037133 FBgn0037133 FBtr0078436 CG7370 protein_coding CG8478-S2-modencode_R2_peak_2642 chrX 957424 957574 + 13 NA Intergenic Intergenic 11942 FBgn0040398 FBgn0040398 FBtr0070179 CG14629 protein_coding CG8478-S2-modencode_R2_peak_2386 chr3R 21927351 21927516 + 13 NA Intergenic Intergenic -3000 FBgn0039411 FBgn0039411 FBtr0113293 dys protein_coding CG8478-S2-modencode_R2_peak_935 chr2R 13566862 13566991 + 13 NA promoter-TSS (FBgn0016059) protein_coding-promoter-TSS (FBgn0016059) -179 FBgn0016059 FBgn0016059 FBtr0302161 Sema-1b protein_coding CG8478-S2-modencode_R2_peak_1153 chr2R 19546490 19546897 + 13 NA promoter-TSS (FBgn0034886) protein_coding-promoter-TSS (FBgn0034886) 1599 FBgn0034886 FBgn0034886 FBtr0072078 Pde8 protein_coding CG8478-S2-modencode_R2_peak_2228 chr3R 16783140 16783318 + 13 NA promoter-TSS (FBgn0002921) protein_coding-promoter-TSS (FBgn0002921) 8793 FBgn0002921 FBgn0002921 FBtr0089516 Atpalpha protein_coding CG8478-S2-modencode_R2_peak_449 chr2R 483700 483929 + 13 NA intron (FBgn0260799, intron 1 of 3) protein_coding-intron (FBgn0260799, intron 1 of 4) 1016 FBgn0260799 FBgn0260799 FBtr0111114 p120ctn protein_coding CG8478-S2-modencode_R2_peak_499 chr2R 2646901 2647012 + 13 NA promoter-TSS (FBgn0033101) protein_coding-promoter-TSS (FBgn0033101) -552 FBgn0033101 FBgn0033101 FBtr0086134 CG9436 protein_coding CG8478-S2-modencode_R2_peak_123 chr2L 5303714 5303908 + 13 NA intron (FBgn0016076, intron 1 of 2) protein_coding-intron (FBgn0016076, intron 1 of 2) -1911 FBgn0016076 FBgn0016076 FBtr0300020 vri protein_coding CG8478-S2-modencode_R2_peak_2908 chrX 8298330 8298431 + 13 NA TTS (FBgn0030034) protein_coding-TTS (FBgn0030034) 2916 FBgn0030035 FBgn0030035 FBtr0071175 CG11190 protein_coding CG8478-S2-modencode_R2_peak_2528 chr3R 27231479 27231921 + 13 NA promoter-TSS (FBgn0039846) protein_coding-promoter-TSS (FBgn0039846) 729 FBgn0261988 FBgn0261988 FBtr0085788 Gprk2 protein_coding CG8478-S2-modencode_R2_peak_1330 chr3L 3942267 3942565 + 13 NA promoter-TSS (FBgn0035477) protein_coding-promoter-TSS (FBgn0035477) 49 FBgn0027552 FBgn0027552 FBtr0073171 CG10863 protein_coding CG8478-S2-modencode_R2_peak_2318 chr3R 19818969 19819290 + 13 NA promoter-TSS (FBgn0039137) protein_coding-promoter-TSS (FBgn0039137) -326 FBgn0015795 FBgn0015795 FBtr0308612 Rab7 protein_coding CG8478-S2-modencode_R2_peak_3303 chrX 21153300 21153575 + 13 NA Intergenic Intergenic -1257 FBgn0052521 FBgn0052521 FBtr0310654 CG32521 protein_coding CG8478-S2-modencode_R2_peak_1999 chr3R 7713751 7713894 + 13 NA promoter-TSS (FBgn0037960) protein_coding-promoter-TSS (FBgn0037960) -935 FBgn0037960 FBgn0037960 FBtr0082515 mthl5 protein_coding CG8478-S2-modencode_R2_peak_300 chr2L 13067437 13067520 + 13 NA Intergenic Intergenic -7363 FBgn0262160 FBgn0262160 FBtr0089956 CG9932 protein_coding CG8478-S2-modencode_R2_peak_684 chr2R 6974865 6975169 + 13 NA promoter-TSS (FBgn0262818) protein_coding-promoter-TSS (FBgn0262818) -873 FBgn0262818 FBgn0262818 FBtr0306050 CG43189 protein_coding CG8478-S2-modencode_R2_peak_2861 chrX 6754564 6754959 + 13 NA Intergenic Intergenic -7780 FBgn0263993 FBgn0263993 FBtr0330263 CG43736 protein_coding CG8478-S2-modencode_R2_peak_2087 chr3R 11504881 11505135 + 13 NA intron (FBgn0053207, intron 3 of 4) protein_coding-intron (FBgn0053207, intron 3 of 4) 11308 FBgn0264431 FBgn0264431 FBtr0332551 CR43849 ncRNA CG8478-S2-modencode_R2_peak_2570 chr4 1041737 1041951 + 13 NA intron (FBgn0025741, intron 1 of 8) protein_coding-intron (FBgn0025741, intron 2 of 9) 5876 FBgn0025741 FBgn0025741 FBtr0100296 plexA protein_coding CG8478-S2-modencode_R2_peak_1259 chr3L 2488065 2488157 + 13 NA promoter-TSS (FBgn0035346) protein_coding-promoter-TSS (FBgn0035346) -2109 FBgn0035346 FBgn0035346 FBtr0072923 CG1146 protein_coding CG8478-S2-modencode_R2_peak_826 chr2R 10244596 10244788 + 13 NA promoter-TSS (FBgn0033925) protein_coding-promoter-TSS (FBgn0033925) 97 FBgn0033925 FBgn0033925 FBtr0087561 CG8617 protein_coding CG8478-S2-modencode_R2_peak_2523 chr3R 26953151 26953408 + 13 NA TTS (FBgn0039820) protein_coding-TTS (FBgn0039820) 1406 FBgn0039820 FBgn0039820 FBtr0085736 CG15554 protein_coding CG8478-S2-modencode_R2_peak_2837 chrX 5895364 5895525 + 13 NA promoter-TSS (FBgn0027546) protein_coding-promoter-TSS (FBgn0027546) -614 FBgn0027546 FBgn0027546 FBtr0070891 CG4766 protein_coding CG8478-S2-modencode_R2_peak_50 chr2L 1665427 1665617 + 13 NA intron (FBgn0086758, intron 2 of 6) protein_coding-intron (FBgn0086758, intron 2 of 6) 14264 FBgn0086758 FBgn0086758 FBtr0077878 chinmo protein_coding CG8478-S2-modencode_R2_peak_328 chr2L 15445025 15445208 + 13 NA Intergenic Intergenic 11754 FBgn0028892 FBgn0028892 FBtr0080735 CG4161 protein_coding CG8478-S2-modencode_R2_peak_3095 chrX 12573999 12574187 + 13 NA TTS (FBgn0011837) protein_coding-TTS (FBgn0011837) 20598 FBgn0053963 FBgn0053963 FBtr0100004 CR33963 ncRNA CG8478-S2-modencode_R2_peak_1816 chr3R 2162909 2163118 + 13 NA TTS (FBgn0037429) protein_coding-TTS (FBgn0037429) 1927 FBgn0037429 FBgn0037429 FBtr0301493 Osi19 protein_coding CG8478-S2-modencode_R2_peak_523 chr2R 3474515 3474732 + 13 NA promoter-TSS (FBgn0004133) protein_coding-promoter-TSS (FBgn0004133) -42 FBgn0004133 FBgn0004133 FBtr0310050 blow protein_coding CG8478-S2-modencode_R2_peak_1791 chr3R 92703 92917 + 13 NA exon (FBgn0037228, exon 1 of 2) protein_coding-exon (FBgn0037228, exon 1 of 2) 116 FBgn0037228 FBgn0037228 FBtr0111222 CG1092 protein_coding CG8478-S2-modencode_R2_peak_2555 chr4 90131 90578 + 13 NA promoter-TSS (FBgn0085432) protein_coding-promoter-TSS (FBgn0085432) 67 FBgn0085432 FBgn0085432 FBtr0112657 pan protein_coding CG8478-S2-modencode_R2_peak_3276 chrX 19591182 19591259 + 13 NA promoter-TSS (FBgn0010341) protein_coding-promoter-TSS (FBgn0010341) -285 FBgn0010341 FBgn0010341 FBtr0074752 Cdc42 protein_coding CG8478-S2-modencode_R2_peak_820 chr2R 9971022 9971207 + 13 NA intron (FBgn0040752, intron 3 of 11) protein_coding-intron (FBgn0040752, intron 3 of 11) -6716 FBgn0259183 FBgn0259183 FBtr0299667 CG42287 protein_coding CG8478-S2-modencode_R2_peak_834 chr2R 10460561 10460728 + 13 NA intron (FBgn0010397, intron 1 of 3) protein_coding-intron (FBgn0020245, intron 5 of 9) 2632 FBgn0010397 FBgn0010397 FBtr0333166 LamC protein_coding CG8478-S2-modencode_R2_peak_2145 chr3R 12822201 12822356 + 13 NA promoter-TSS (FBgn0038462) protein_coding-promoter-TSS (FBgn0038462) 104 FBgn0038463 FBgn0038463 FBtr0083370 CG3534 protein_coding CG8478-S2-modencode_R2_peak_2759 chrX 3591010 3591080 + 13 NA intron (FBgn0023215, intron 2 of 7) protein_coding-intron (FBgn0023215, intron 2 of 7) 7647 FBgn0023215 FBgn0023215 FBtr0301825 Mnt protein_coding CG8478-S2-modencode_R2_peak_2663 chrX 1516617 1516713 + 13 NA promoter-TSS (FBgn0000210) protein_coding-promoter-TSS (FBgn0000210) -4477 FBgn0025390 FBgn0025390 FBtr0070284 Mur2B protein_coding CG8478-S2-modencode_R2_peak_2533 chr3R 27423000 27423158 + 13 NA exon (FBgn0039858, exon 6 of 6) protein_coding-exon (FBgn0039858, exon 6 of 6) -1153 FBgn0039857 FBgn0039857 FBtr0085805 RpL6 protein_coding CG8478-S2-modencode_R2_peak_1567 chr3L 14544272 14544357 + 13 NA promoter-TSS (FBgn0036428) protein_coding-promoter-TSS (FBgn0036428) -239 FBgn0036428 FBgn0036428 FBtr0075723 CG9238 protein_coding CG8478-S2-modencode_R2_peak_800 chr2R 9741380 9741526 + 13 NA TTS (FBgn0050485) protein_coding-TTS (FBgn0050485) 383 FBgn0033879 FBgn0033879 FBtr0087644 CG6543 protein_coding CG8478-S2-modencode_R2_peak_2943 chrX 9387044 9387587 + 13 NA intron (FBgn0261260, intron 1 of 2) protein_coding-intron (FBgn0261260, intron 1 of 14) 2906 FBgn0261260 FBgn0261260 FBtr0302154 mgl protein_coding CG8478-S2-modencode_R2_peak_2681 chrX 2035691 2035912 + 13 NA promoter-TSS (FBgn0023507) protein_coding-promoter-TSS (FBgn0023507) -919 FBgn0023507 FBgn0023507 FBtr0070383 CG3835 protein_coding CG8478-S2-modencode_R2_peak_835 chr2R 10509302 10509503 + 13 NA promoter-TSS (FBgn0033948) protein_coding-promoter-TSS (FBgn0033948) 115 FBgn0082951 FBgn0082951 FBtr0113501 snoRNA:Me18S-C1366 snoRNA CG8478-S2-modencode_R2_peak_2226 chr3R 16734490 16734621 + 13 NA TTS (FBgn0038840) protein_coding-TTS (FBgn0038840) -3315 FBgn0044810 FBgn0044810 FBtr0083985 TotX protein_coding CG8478-S2-modencode_R2_peak_2537 chr3R 27539460 27539613 + 13 NA promoter-TSS (FBgn0003870) protein_coding-promoter-TSS (FBgn0003870) 4539 FBgn0054046 FBgn0054046 FBtr0308935 CR34046 ncRNA CG8478-S2-modencode_R2_peak_1907 chr3R 5061046 5061281 + 13 NA intron (FBgn0003165, intron 1 of 12) protein_coding-intron (FBgn0003165, intron 1 of 12) 4826 FBgn0000412 FBgn0000412 FBtr0301524 D1 protein_coding CG8478-S2-modencode_R2_peak_1250 chr3L 1413424 1413523 + 13 NA TTS (FBgn0035216) protein_coding-TTS (FBgn0035216) 2385 FBgn0035216 FBgn0035216 FBtr0072692 CG9168 protein_coding CG8478-S2-modencode_R2_peak_2929 chrX 9140181 9140251 + 13 NA TTS (FBgn0260771) protein_coding-TTS (FBgn0260771) 942 FBgn0000077 FBgn0000077 FBtr0307281 amx protein_coding CG8478-S2-modencode_R2_peak_796 chr2R 9710001 9710223 + 13 NA intron (FBgn0000662, intron 1 of 4) protein_coding-intron (FBgn0000662, intron 1 of 3) 1942 FBgn0000662 FBgn0000662 FBtr0304697 fl(2)d protein_coding CG8478-S2-modencode_R2_peak_687 chr2R 6977653 6978916 + 13 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -4140 FBgn0262818 FBgn0262818 FBtr0306050 CG43189 protein_coding CG8478-S2-modencode_R2_peak_3008 chrX 10242120 10242538 + 13 NA TTS (FBgn0065046) snoRNA-TTS (FBgn0065046) 126 FBgn0065046 FBgn0065046 FBtr0091641 snoRNA:U3:9B snoRNA CG8478-S2-modencode_R2_peak_2367 chr3R 21433196 21433660 + 13 NA exon (FBgn0011666, exon 7 of 7) protein_coding-exon (FBgn0011666, exon 7 of 7) 1421 FBgn0261287 FBgn0261287 FBtr0084895 ymp protein_coding CG8478-S2-modencode_R2_peak_679 chr2R 6961869 6962193 + 13 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -11060 FBgn0262817 FBgn0262817 FBtr0306049 CG43188 protein_coding CG8478-S2-modencode_R2_peak_3060 chrX 11574841 11574929 + 13 NA exon (FBgn0014133, exon 2 of 6) protein_coding-exon (FBgn0014133, exon 2 of 6) 1857 FBgn0014133 FBgn0014133 FBtr0073526 bif protein_coding CG8478-S2-modencode_R2_peak_1721 chr3L 19854735 19854884 + 13 NA TTS (FBgn0020389) protein_coding-TTS (FBgn0020389) 9369 FBgn0262518 FBgn0262518 FBtr0308832 Rab8 protein_coding CG8478-S2-modencode_R2_peak_40 chr2L 1077523 1077693 + 13 NA promoter-TSS (FBgn0015905) protein_coding-promoter-TSS (FBgn0015905) 203 FBgn0003310 FBgn0003310 FBtr0077994 S protein_coding CG8478-S2-modencode_R2_peak_3158 chrX 14840765 14840894 + 13 NA intron (FBgn0027601, intron 3 of 6) protein_coding-intron (FBgn0027601, intron 1 of 4) 4998 FBgn0027601 FBgn0027601 FBtr0073972 pdgy protein_coding CG8478-S2-modencode_R2_peak_1186 chr2R 20949191 20949457 + 13 NA promoter-TSS (FBgn0001148) protein_coding-promoter-TSS (FBgn0001148) -178 FBgn0001148 FBgn0001148 FBtr0072444 gsb protein_coding CG8478-S2-modencode_R2_peak_866 chr2R 11818719 11819140 + 13 NA TTS (FBgn0015247) protein_coding-TTS (FBgn0015247) 505 FBgn0034049 FBgn0034049 FBtr0087299 bdg protein_coding CG8478-S2-modencode_R2_peak_1358 chr3L 5173404 5173522 + 13 NA intron (FBgn0052423, intron 3 of 11) protein_coding-intron (FBgn0052423, intron 3 of 10) 4434 FBgn0052423 FBgn0052423 FBtr0301599 shep protein_coding CG8478-S2-modencode_R2_peak_2408 chr3R 22287097 22287167 + 13 NA promoter-TSS (FBgn0039430) protein_coding-promoter-TSS (FBgn0039430) 3057 FBgn0039429 FBgn0039429 FBtr0085014 CG14238 protein_coding CG8478-S2-modencode_R2_peak_563 chr2R 4124622 4124799 + 13 NA promoter-TSS (FBgn0013726) protein_coding-promoter-TSS (FBgn0013726) -654 FBgn0013726 FBgn0013726 FBtr0088793 pnut protein_coding CG8478-S2-modencode_R2_peak_410 chr2L 20674260 20674389 + 13 NA intron (FBgn0051678, intron 2 of 5) protein_coding-intron (FBgn0051678, intron 2 of 5) -1910 FBgn0086657 FBgn0086657 FBtr0081390 ik2 protein_coding CG8478-S2-modencode_R2_peak_816 chr2R 9894296 9894892 + 13 NA intron (FBgn0002643, intron 2 of 6) protein_coding-intron (FBgn0002643, intron 2 of 6) -1108 FBgn0263539 FBgn0263539 FBtr0309641 mir-4978 pre_miRNA CG8478-S2-modencode_R2_peak_1370 chr3L 5915680 5915838 + 13 NA exon (FBgn0052407, exon 1 of 3) protein_coding-exon (FBgn0052407, exon 1 of 3) 183 FBgn0052407 FBgn0052407 FBtr0330118 CG32407 protein_coding CG8478-S2-modencode_R2_peak_1040 chr2R 15306347 15306956 + 13 NA intron (FBgn0263391, intron 1 of 12) protein_coding-intron (FBgn0263391, intron 2 of 11) 3875 FBgn0050326 FBgn0050326 FBtr0086528 tRNA:CR30326 tRNA CG8478-S2-modencode_R2_peak_288 chr2L 12528036 12528106 + 13 NA intron (FBgn0259176, intron 5 of 7) protein_coding-intron (FBgn0259176, intron 5 of 7) -15105 FBgn0261709 FBgn0261709 FBtr0303215 CR42746 ncRNA CG8478-S2-modencode_R2_peak_266 chr2L 12027746 12027984 + 13 NA intron (FBgn0010497, intron 1 of 4) protein_coding-intron (FBgn0010497, intron 1 of 4) 425 FBgn0010497 FBgn0010497 FBtr0080292 dmGlut protein_coding CG8478-S2-modencode_R2_peak_3025 chrX 10417649 10418090 + 13 NA intron (FBgn0085443, intron 3 of 10) protein_coding-intron (FBgn0085443, intron 3 of 9) -37209 FBgn0052687 FBgn0052687 FBtr0071458 CG32687 protein_coding CG8478-S2-modencode_R2_peak_921 chr2R 13215849 13216038 + 13 NA intron (FBgn0261642, intron 2 of 7) protein_coding-intron (FBgn0261642, intron 2 of 3) -21136 FBgn0263709 FBgn0263709 FBtr0310348 CR43661 ncRNA CG8478-S2-modencode_R2_peak_150 chr2L 6785861 6785990 + 13 NA intron (FBgn0015776, intron 1 of 3) protein_coding-intron (FBgn0015776, intron 1 of 3) 936 FBgn0015776 FBgn0015776 FBtr0332370 nrv1 protein_coding CG8478-S2-modencode_R2_peak_1757 chr3L 21763903 21763988 + 13 NA promoter-TSS (FBgn0037130) protein_coding-promoter-TSS (FBgn0037130) -311 FBgn0037130 FBgn0037130 FBtr0333893 Syn1 protein_coding CG8478-S2-modencode_R2_peak_48 chr2L 1656601 1656798 + 13 NA intron (FBgn0086758, intron 2 of 6) protein_coding-intron (FBgn0086758, intron 2 of 6) 5441 FBgn0086758 FBgn0086758 FBtr0077878 chinmo protein_coding CG8478-S2-modencode_R2_peak_1372 chr3L 6182215 6182285 + 13 NA promoter-TSS (FBgn0035691) protein_coding-promoter-TSS (FBgn0035691) -27 FBgn0022935 FBgn0022935 FBtr0077016 D19A protein_coding CG8478-S2-modencode_R2_peak_722 chr2R 7252108 7252234 + 13 NA Intergenic Intergenic 2766 FBgn0041241 FBgn0041241 FBtr0088127 Gr47b protein_coding CG8478-S2-modencode_R2_peak_2358 chr3R 21154663 21154881 + 13 NA TTS (FBgn0039328) protein_coding-TTS (FBgn0039328) 252 FBgn0045761 FBgn0045761 FBtr0113350 CHKov1 protein_coding CG8478-S2-modencode_R2_peak_3114 chrX 12635923 12636400 + 13 NA promoter-TSS (FBgn0263865) protein_coding-promoter-TSS (FBgn0263865) 316 FBgn0263865 FBgn0263865 FBtr0333766 Smr protein_coding CG8478-S2-modencode_R2_peak_195 chr2L 8418218 8418338 + 13 NA intron (FBgn0027932, intron 1 of 4) protein_coding-intron (FBgn0027932, intron 1 of 5) 2588 FBgn0027932 FBgn0027932 FBtr0079666 Akap200 protein_coding CG8478-S2-modencode_R2_peak_1410 chr3L 8050273 8050546 + 13 NA promoter-TSS (FBgn0026263) protein_coding-promoter-TSS (FBgn0026263) -934 FBgn0026263 FBgn0026263 FBtr0302329 bip1 protein_coding CG8478-S2-modencode_R2_peak_2257 chr3R 17655380 17655474 + 13 NA Intergenic Intergenic -2798 FBgn0041229 FBgn0041229 FBtr0084133 Gr93a protein_coding CG8478-S2-modencode_R2_peak_1185 chr2R 20889795 20889965 + 13 NA exon (FBgn0005634, exon 4 of 14) protein_coding-exon (FBgn0005634, exon 4 of 14) 9116 FBgn0005634 FBgn0005634 FBtr0302574 zip protein_coding CG8478-S2-modencode_R2_peak_1024 chr2R 15068836 15068914 + 13 NA intron (FBgn0263395, intron 2 of 14) protein_coding-intron (FBgn0263395, intron 2 of 14) 2616 FBgn0263395 FBgn0263395 FBtr0086504 hppy protein_coding CG8478-S2-modencode_R2_peak_3018 chrX 10380791 10380977 + 13 NA promoter-TSS (FBgn0052687) protein_coding-promoter-TSS (FBgn0052687) -224 FBgn0052687 FBgn0052687 FBtr0071458 CG32687 protein_coding CG8478-S2-modencode_R2_peak_1337 chr3L 4221211 4221469 + 13 NA TTS (FBgn0052252) ncRNA-TTS (FBgn0052252) 1394 FBgn0052252 FBgn0052252 FBtr0307363 CR32252 ncRNA CG8478-S2-modencode_R2_peak_1615 chr3L 16691256 16691415 + 13 NA intron (FBgn0264605, intron 1 of 5) protein_coding-intron (FBgn0063485, intron 1 of 6) -6738 FBgn0036654 FBgn0036654 FBtr0075317 CG9692 protein_coding CG8478-S2-modencode_R2_peak_1860 chr3R 3711642 3712066 + 13 NA promoter-TSS (FBgn0037526) protein_coding-promoter-TSS (FBgn0037526) 601 FBgn0037525 FBgn0037525 FBtr0300826 CG17816 protein_coding CG8478-S2-modencode_R2_peak_3217 chrX 16530918 16531405 + 13 NA promoter-TSS (FBgn0010412) protein_coding-promoter-TSS (FBgn0010412) 291 FBgn0026181 FBgn0026181 FBtr0074286 rok protein_coding CG8478-S2-modencode_R2_peak_765 chr2R 8756167 8756301 + 13 NA intron (FBgn0033777, intron 2 of 4) protein_coding-intron (FBgn0033777, intron 2 of 4) 694 FBgn0033777 FBgn0033777 FBtr0306581 CG17574 protein_coding CG8478-S2-modencode_R2_peak_226 chr2L 9070179 9070308 + 13 NA intron (FBgn0051708, intron 1 of 9) protein_coding-intron (FBgn0051708, intron 1 of 9) 919 FBgn0051708 FBgn0051708 FBtr0303881 CG31708 protein_coding CG8478-S2-modencode_R2_peak_1992 chr3R 7476322 7476450 + 13 NA promoter-TSS (FBgn0037926) protein_coding-promoter-TSS (FBgn0037926) -324 FBgn0037926 FBgn0037926 FBtr0082420 Elp1 protein_coding CG8478-S2-modencode_R2_peak_1234 chr3L 764811 765044 + 13 NA Intergenic Intergenic -4576 FBgn0052480 FBgn0052480 FBtr0072579 tRNA:CR32480 tRNA CG8478-S2-modencode_R2_peak_1517 chr3L 11285421 11285654 + 13 NA intron (FBgn0036152, intron 1 of 3) protein_coding-intron (FBgn0036152, intron 1 of 2) 3482 FBgn0036152 FBgn0036152 FBtr0076183 CG6175 protein_coding CG8478-S2-modencode_R2_peak_2542 chr3R 27814157 27814283 + 13 NA intron (FBgn0039886, intron 1 of 3) protein_coding-intron (FBgn0039886, intron 1 of 3) 1649 FBgn0039886 FBgn0039886 FBtr0085871 CG2003 protein_coding CG8478-S2-modencode_R2_peak_1008 chr2R 14689165 14689468 + 13 NA intron (FBgn0010651, intron 1 of 3) protein_coding-intron (FBgn0010651, intron 2 of 4) 588 FBgn0010651 FBgn0010651 FBtr0086635 l(2)08717 protein_coding CG8478-S2-modencode_R2_peak_2854 chrX 6689425 6689657 + 13 NA promoter-TSS (FBgn0259228) protein_coding-promoter-TSS (FBgn0259228) 8038 FBgn0259228 FBgn0259228 FBtr0299795 C3G protein_coding CG8478-S2-modencode_R2_peak_808 chr2R 9850371 9850490 + 13 NA intron (FBgn0013770, intron 2 of 3) protein_coding-intron (FBgn0013770, intron 2 of 3) -1743 FBgn0261975 FBgn0261975 FBtr0304022 CG42806 protein_coding CG8478-S2-modencode_R2_peak_78 chr2L 2925372 2925595 + 13 NA intron (FBgn0041111, intron 2 of 11) protein_coding-intron (FBgn0041111, intron 2 of 12) -31428 FBgn0010263 FBgn0010263 FBtr0077640 Rbp9 protein_coding CG8478-S2-modencode_R2_peak_517 chr2R 3340800 3340921 + 13 NA Intergenic Intergenic -1804 FBgn0050502 FBgn0050502 FBtr0300959 fa2h protein_coding CG8478-S2-modencode_R2_peak_1314 chr3L 3438188 3438580 + 13 NA intron (FBgn0026259, intron 7 of 8) protein_coding-intron (FBgn0026259, intron 7 of 8) -20457 FBgn0014388 FBgn0014388 FBtr0073146 sty protein_coding CG8478-S2-modencode_R2_peak_270 chr2L 12457173 12457698 + 13 NA exon (FBgn0259176, exon 3 of 3) protein_coding-exon (FBgn0259176, exon 3 of 3) 2655 FBgn0262203 FBgn0262203 FBtr0304239 mir-967 pre_miRNA CG8478-S2-modencode_R2_peak_149 chr2L 6724249 6724468 + 13 NA promoter-TSS (FBgn0025777) protein_coding-promoter-TSS (FBgn0025777) 455 FBgn0046704 FBgn0046704 FBtr0329943 Liprin-alpha protein_coding CG8478-S2-modencode_R2_peak_2204 chr3R 15660775 15660900 + 13 NA intron (FBgn0014135, intron 1 of 4) protein_coding-intron (FBgn0014135, intron 1 of 4) 1702 FBgn0014135 FBgn0014135 FBtr0300123 bnl protein_coding CG8478-S2-modencode_R2_peak_3177 chrX 15487706 15487926 + 13 NA Intergenic Intergenic -2855 FBgn0030662 FBgn0030662 FBtr0074064 CG9220 protein_coding CG8478-S2-modencode_R2_peak_2992 chrX 10101529 10101615 + 13 NA exon (FBgn0030183, exon 3 of 3) protein_coding-exon (FBgn0030183, exon 3 of 3) 2341 FBgn0030183 FBgn0030183 FBtr0112974 CG15309 protein_coding CG8478-S2-modencode_R2_peak_2110 chr3R 12035051 12035386 + 13 NA Intergenic Intergenic -4245 FBgn0010438 FBgn0010438 FBtr0083277 mtSSB protein_coding CG8478-S2-modencode_R2_peak_1068 chr2R 16207821 16207914 + 13 NA promoter-TSS (FBgn0027529) protein_coding-promoter-TSS (FBgn0027529) -632 FBgn0027529 FBgn0027529 FBtr0309253 CG8920 protein_coding CG8478-S2-modencode_R2_peak_561 chr2R 4010025 4010311 + 13 NA promoter-TSS (FBgn0033264) protein_coding-promoter-TSS (FBgn0033264) 188 FBgn0050372 FBgn0050372 FBtr0100140 Asap1 protein_coding CG8478-S2-modencode_R2_peak_2034 chr3R 9190524 9190774 + 13 NA promoter-TSS (FBgn0027610) protein_coding-promoter-TSS (FBgn0027610) -339 FBgn0086371 FBgn0086371 FBtr0082772 poly protein_coding CG8478-S2-modencode_R2_peak_663 chr2R 6507987 6508107 + 13 NA intron (FBgn0033538, intron 2 of 9) protein_coding-intron (FBgn0033538, intron 2 of 8) -1661 FBgn0033538 FBgn0033538 FBtr0113063 CG11883 protein_coding CG8478-S2-modencode_R2_peak_2499 chr3R 26286465 26286574 + 13 NA exon (FBgn0039774, exon 1 of 6) protein_coding-intron (FBgn0039774, intron 1 of 5) 1276 FBgn0039774 FBgn0039774 FBtr0085649 CDase protein_coding CG8478-S2-modencode_R2_peak_987 chr2R 14498111 14498483 + 13 NA TTS (FBgn0261587) protein_coding-TTS (FBgn0261587) 963 FBgn0050115 FBgn0050115 FBtr0310055 GEFmeso protein_coding CG8478-S2-modencode_R2_peak_424 chr2L 21108865 21109072 + 13 NA intron (FBgn0040297, intron 1 of 20) protein_coding-intron (FBgn0040297, intron 1 of 19) 1009 FBgn0040297 FBgn0040297 FBtr0299911 Nhe2 protein_coding CG8478-S2-modencode_R2_peak_1948 chr3R 5906236 5906363 + 13 NA Intergenic Intergenic -5204 FBgn0037786 FBgn0037786 FBtr0309853 CG5361 protein_coding CG8478-S2-modencode_R2_peak_3019 chrX 10386527 10386757 + 13 NA exon (FBgn0085443, exon 1 of 3) protein_coding-exon (FBgn0085443, exon 1 of 3) -5982 FBgn0052687 FBgn0052687 FBtr0071458 CG32687 protein_coding CG8478-S2-modencode_R2_peak_1391 chr3L 7802964 7803252 + 13 NA promoter-TSS (FBgn0052369) protein_coding-promoter-TSS (FBgn0052369) -183 FBgn0052369 FBgn0052369 FBtr0076783 CG32369 protein_coding CG8478-S2-modencode_R2_peak_2544 chr3R 27887132 27887382 + 13 NA intron (FBgn0002645, intron 1 of 2) protein_coding-intron (FBgn0002645, intron 1 of 1) 6905 FBgn0002645 FBgn0002645 FBtr0085876 Map205 protein_coding CG8478-S2-modencode_R2_peak_2023 chr3R 8549986 8550081 + 13 NA Intergenic Intergenic -4519 FBgn0002719 FBgn0002719 FBtr0330025 Men protein_coding CG8478-S2-modencode_R2_peak_3094 chrX 12564684 12565045 + 13 NA intron (FBgn0011837, intron 2 of 3) protein_coding-intron (FBgn0011837, intron 2 of 3) 11369 FBgn0053963 FBgn0053963 FBtr0100004 CR33963 ncRNA CG8478-S2-modencode_R2_peak_451 chr2R 602113 602503 + 13 NA intron (FBgn0026401, intron 10 of 23) protein_coding-intron (FBgn0026401, intron 9 of 22) 14207 FBgn0026401 FBgn0026401 FBtr0111118 Nipped-B protein_coding CG8478-S2-modencode_R2_peak_1894 chr3R 4764530 4764796 + 13 NA TTS (FBgn0003015) protein_coding-TTS (FBgn0003015) 199 FBgn0037643 FBgn0037643 FBtr0303526 skap protein_coding CG8478-S2-modencode_R2_peak_36 chr2L 552841 553156 + 13 NA promoter-TSS (FBgn0005660) protein_coding-promoter-TSS (FBgn0005660) -3636 FBgn0005660 FBgn0005660 FBtr0112854 Ets21C protein_coding CG8478-S2-modencode_R2_peak_670 chr2R 6758588 6758715 + 13 NA intron (FBgn0050015, intron 1 of 7) protein_coding-intron (FBgn0050015, intron 1 of 7) 4246 FBgn0050016 FBgn0050016 FBtr0088241 CG30016 protein_coding CG8478-S2-modencode_R2_peak_2482 chr3R 26102731 26102920 + 13 NA promoter-TSS (FBgn0010113) protein_coding-promoter-TSS (FBgn0010113) -831 FBgn0010113 FBgn0010113 FBtr0085620 hdc protein_coding CG8478-S2-modencode_R2_peak_1652 chr3L 17872036 17872362 + 13 NA promoter-TSS (FBgn0036765) protein_coding-promoter-TSS (FBgn0036765) 3 FBgn0036765 FBgn0036765 FBtr0300282 CG7408 protein_coding CG8478-S2-modencode_R2_peak_371 chr2L 18630737 18631213 + 13 NA intron (FBgn0032694, intron 1 of 2) protein_coding-intron (FBgn0032694, intron 1 of 3) 13718 FBgn0032694 FBgn0032694 FBtr0329972 MESR3 protein_coding CG8478-S2-modencode_R2_peak_2787 chrX 3830326 3830486 + 13 NA promoter-TSS (FBgn0029686) protein_coding-promoter-TSS (FBgn0029686) 30 FBgn0029685 FBgn0029685 FBtr0070627 CG2938 protein_coding CG8478-S2-modencode_R2_peak_343 chr2L 16534061 16534193 + 13 NA Intergenic Intergenic -5205 FBgn0086038 FBgn0086038 FBtr0114314 snoRNA:Me28S-C1237 snoRNA CG8478-S2-modencode_R2_peak_1344 chr3L 4239629 4239966 + 13 NA promoter-TSS (FBgn0035515) protein_coding-promoter-TSS (FBgn0035515) -511 FBgn0035515 FBgn0035515 FBtr0073226 CG14997 protein_coding CG8478-S2-modencode_R2_peak_2401 chr3R 22055796 22056076 + 13 NA promoter-TSS (FBgn0039419) protein_coding-promoter-TSS (FBgn0039419) -38 FBgn0039419 FBgn0039419 FBtr0084990 CG12290 protein_coding CG8478-S2-modencode_R2_peak_1684 chr3L 18396128 18396218 + 13 NA Intergenic Intergenic -4638 FBgn0011706 FBgn0011706 FBtr0075120 rpr protein_coding CG8478-S2-modencode_R2_peak_1728 chr3L 20190378 20190823 + 13 NA exon (FBgn0261556, exon 1 of 15) protein_coding-exon (FBgn0261556, exon 1 of 15) -2593 FBgn0262022 FBgn0262022 FBtr0303852 CG42833 protein_coding CG8478-S2-modencode_R2_peak_1407 chr3L 7941102 7941185 + 13 NA promoter-TSS (FBgn0041156) protein_coding-promoter-TSS (FBgn0041156) -143 FBgn0041156 FBgn0041156 FBtr0076751 exex protein_coding CG8478-S2-modencode_R2_peak_2560 chr4 252217 252433 + 12 NA promoter-TSS (FBgn0039897) protein_coding-promoter-TSS (FBgn0039897) 273 FBgn0039897 FBgn0039897 FBtr0300797 CG1674 protein_coding CG8478-S2-modencode_R2_peak_628 chr2R 6351278 6351370 + 12 NA TTS (FBgn0001122) protein_coding-TTS (FBgn0001122) 4656 FBgn0001122 FBgn0001122 FBtr0333064 G-oalpha47A protein_coding CG8478-S2-modencode_R2_peak_1580 chr3L 15223511 15223783 + 12 NA Intergenic Intergenic -5072 FBgn0029114 FBgn0029114 FBtr0075607 Tollo protein_coding CG8478-S2-modencode_R2_peak_1435 chr3L 8692063 8692174 + 12 NA Intergenic Intergenic 21207 FBgn0011509 FBgn0011509 FBtr0076598 SrpRbeta protein_coding CG8478-S2-modencode_R2_peak_216 chr2L 8717382 8717506 + 12 NA intron (FBgn0003209, intron 1 of 8) protein_coding-intron (FBgn0003209, intron 1 of 8) 11872 FBgn0032061 FBgn0032061 FBtr0079731 CG9314 protein_coding CG8478-S2-modencode_R2_peak_22 chr2L 496898 497022 + 12 NA intron (FBgn0003963, intron 2 of 8) protein_coding-intron (FBgn0003963, intron 1 of 7) -17272 FBgn0043364 FBgn0043364 FBtr0310030 cbt protein_coding CG8478-S2-modencode_R2_peak_2487 chr3R 26127795 26127985 + 12 NA intron (FBgn0010113, intron 1 of 5) protein_coding-intron (FBgn0010113, intron 1 of 5) 4469 FBgn0085329 FBgn0085329 FBtr0305269 CG34300 protein_coding CG8478-S2-modencode_R2_peak_2836 chrX 5803839 5803943 + 12 NA intron (FBgn0029822, intron 3 of 4) protein_coding-intron (FBgn0029822, intron 3 of 4) 1733 FBgn0029822 FBgn0029822 FBtr0070826 CG12236 protein_coding CG8478-S2-modencode_R2_peak_2793 chrX 4014304 4014450 + 12 NA exon (FBgn0026083, exon 4 of 8) protein_coding-exon (FBgn0026083, exon 4 of 8) 152 FBgn0026083 FBgn0026083 FBtr0305185 tyf protein_coding CG8478-S2-modencode_R2_peak_2968 chrX 9535866 9536221 + 12 NA intron (FBgn0028341, intron 3 of 7) protein_coding-intron (FBgn0028341, intron 3 of 7) -1386 FBgn0028341 FBgn0028341 FBtr0303559 l(1)G0232 protein_coding CG8478-S2-modencode_R2_peak_1560 chr3L 14266079 14266583 + 12 NA Intergenic Intergenic -1112 FBgn0001085 FBgn0001085 FBtr0075742 fz protein_coding CG8478-S2-modencode_R2_peak_2335 chr3R 20096043 20096390 + 12 NA intron (FBgn0011225, intron 1 of 16) protein_coding-intron (FBgn0011225, intron 1 of 16) 737 FBgn0011225 FBgn0011225 FBtr0301369 jar protein_coding CG8478-S2-modencode_R2_peak_368 chr2L 18572411 18572545 + 12 NA promoter-TSS (FBgn0085370) protein_coding-promoter-TSS (FBgn0085370) -830 FBgn0085370 FBgn0085370 FBtr0303162 Pde11 protein_coding CG8478-S2-modencode_R2_peak_2474 chr3R 25693360 25693461 + 12 NA promoter-TSS (FBgn0039714) protein_coding-promoter-TSS (FBgn0039714) 1208 FBgn0039714 FBgn0039714 FBtr0089920 CG7816 protein_coding CG8478-S2-modencode_R2_peak_1981 chr3R 6503403 6503489 + 12 NA promoter-TSS (FBgn0037818) protein_coding-promoter-TSS (FBgn0037818) -554 FBgn0037818 FBgn0037818 FBtr0082323 CG6465 protein_coding CG8478-S2-modencode_R2_peak_3314 chrX 21883005 21883298 + 12 NA intron (FBgn0031190, intron 1 of 3) protein_coding-intron (FBgn0031190, intron 1 of 3) -1336 FBgn0031191 FBgn0031191 FBtr0310475 Cp110 protein_coding CG8478-S2-modencode_R2_peak_3169 chrX 14937251 14937369 + 12 NA promoter-TSS (FBgn0030603) protein_coding-promoter-TSS (FBgn0030603) -4219 FBgn0030603 FBgn0030603 FBtr0073959 CG5541 protein_coding CG8478-S2-modencode_R2_peak_3248 chrX 18668927 18669066 + 12 NA promoter-TSS (FBgn0030955) protein_coding-promoter-TSS (FBgn0030955) -732 FBgn0030954 FBgn0030954 FBtr0113003 CCKLR-17D3 protein_coding CG8478-S2-modencode_R2_peak_212 chr2L 8708461 8708643 + 12 NA exon (FBgn0004914, exon 1 of 8) protein_coding-exon (FBgn0004914, exon 1 of 8) 2980 FBgn0032061 FBgn0032061 FBtr0079731 CG9314 protein_coding CG8478-S2-modencode_R2_peak_5 chr2L 136839 136954 + 12 NA intron (FBgn0031228, intron 1 of 2) protein_coding-intron (FBgn0031228, intron 1 of 2) 4096 FBgn0051976 FBgn0051976 FBtr0302194 CG31976 protein_coding CG8478-S2-modencode_R2_peak_2125 chr3R 12137595 12137679 + 12 NA exon (FBgn0040271, exon 7 of 10) protein_coding-exon (FBgn0040271, exon 7 of 10) 6152 FBgn0038412 FBgn0038412 FBtr0083266 Zip3 protein_coding CG8478-S2-modencode_R2_peak_2478 chr3R 25926431 25926626 + 12 NA intron (FBgn0015542, intron 7 of 7) protein_coding-intron (FBgn0015542, intron 7 of 11) 22457 FBgn0040625 FBgn0040625 FBtr0302312 CG18682 protein_coding CG8478-S2-modencode_R2_peak_1592 chr3L 15820801 15820984 + 12 NA intron (FBgn0040230, intron 1 of 6) protein_coding-intron (FBgn0040230, intron 1 of 5) 904 FBgn0040230 FBgn0040230 FBtr0332133 dbo protein_coding CG8478-S2-modencode_R2_peak_957 chr2R 14193141 14193254 + 12 NA intron (FBgn0010575, intron 1 of 10) protein_coding-intron (FBgn0010575, intron 1 of 11) -1715 FBgn0034327 FBgn0034327 FBtr0307186 CG14505 protein_coding CG8478-S2-modencode_R2_peak_1329 chr3L 3797574 3797738 + 12 NA intron (FBgn0052264, intron 2 of 10) protein_coding-intron (FBgn0052264, intron 1 of 10) 3632 FBgn0052264 FBgn0052264 FBtr0073188 CG32264 protein_coding CG8478-S2-modencode_R2_peak_2864 chrX 6760063 6760262 + 12 NA Intergenic Intergenic -2379 FBgn0263993 FBgn0263993 FBtr0330263 CG43736 protein_coding CG8478-S2-modencode_R2_peak_2364 chr3R 21319989 21320150 + 12 NA exon (FBgn0053494, exon 2 of 3) protein_coding-exon (FBgn0053494, exon 2 of 3) 814 FBgn0053494 FBgn0053494 FBtr0089607 CG33494 protein_coding CG8478-S2-modencode_R2_peak_1612 chr3L 16636791 16636861 + 12 NA intron (FBgn0000017, intron 1 of 8) protein_coding-intron (FBgn0000017, intron 1 of 7) 4156 FBgn0000017 FBgn0000017 FBtr0330136 Abl protein_coding CG8478-S2-modencode_R2_peak_1762 chr3L 22717339 22717506 + 12 NA promoter-TSS (FBgn0016034) protein_coding-promoter-TSS (FBgn0016034) 89 FBgn0016034 FBgn0016034 FBtr0089633 mael protein_coding CG8478-S2-modencode_R2_peak_719 chr2R 7176049 7176257 + 12 NA intron (FBgn0033609, intron 1 of 8) protein_coding-intron (FBgn0033609, intron 1 of 8) 1100 FBgn0033609 FBgn0033609 FBtr0088178 fbl6 protein_coding CG8478-S2-modencode_R2_peak_2624 chrUextra 12442409 12442598 + 12 NA NA NA NA NA CG8478-S2-modencode_R2_peak_3007 chrX 10239121 10239323 + 12 NA intron (FBgn0263997, intron 3 of 3) protein_coding-intron (FBgn0263997, intron 3 of 3) -2981 FBgn0065046 FBgn0065046 FBtr0091641 snoRNA:U3:9B snoRNA CG8478-S2-modencode_R2_peak_1085 chr2R 17171248 17171365 + 12 NA exon (FBgn0034611, exon 4 of 7) protein_coding-exon (FBgn0034611, exon 4 of 7) 1401 FBgn0034611 FBgn0034611 FBtr0071591 MFS16 protein_coding CG8478-S2-modencode_R2_peak_2203 chr3R 15514327 15514518 + 12 NA intron (FBgn0051216, intron 3 of 6) protein_coding-intron (FBgn0051216, intron 3 of 6) -16351 FBgn0012003 FBgn0012003 FBtr0083799 tRNA:V3b:92Ba tRNA CG8478-S2-modencode_R2_peak_930 chr2R 13347599 13347824 + 12 NA promoter-TSS (FBgn0028953) protein_coding-promoter-TSS (FBgn0028953) -392 FBgn0028953 FBgn0028953 FBtr0086922 CG14478 protein_coding CG8478-S2-modencode_R2_peak_1046 chr2R 15312085 15312229 + 12 NA promoter-TSS (FBgn0012051) protein_coding-promoter-TSS (FBgn0012051) 294 FBgn0263391 FBgn0263391 FBtr0309107 hts protein_coding CG8478-S2-modencode_R2_peak_2827 chrX 5631458 5631790 + 12 NA exon (FBgn0052758, exon 1 of 6) protein_coding-exon (FBgn0052758, exon 1 of 6) 4840 FBgn0029795 FBgn0029795 FBtr0070806 CG15773 protein_coding CG8478-S2-modencode_R2_peak_641 chr2R 6432825 6433112 + 12 NA Intergenic Intergenic -8193 FBgn0263483 FBgn0263483 FBtr0309782 snoRNA:lola-d snoRNA CG8478-S2-modencode_R2_peak_3030 chrX 10435849 10436026 + 12 NA intron (FBgn0085443, intron 3 of 10) protein_coding-intron (FBgn0085443, intron 3 of 9) 24687 FBgn0030215 FBgn0030215 FBtr0310297 CG15296 protein_coding CG8478-S2-modencode_R2_peak_2777 chrX 3667737 3667936 + 12 NA intron (FBgn0086899, intron 1 of 7) protein_coding-intron (FBgn0086899, intron 3 of 9) 1163 FBgn0086899 FBgn0086899 FBtr0070596 tlk protein_coding CG8478-S2-modencode_R2_peak_1551 chr3L 14023374 14023484 + 12 NA exon (FBgn0061515, exon 3 of 3) protein_coding-exon (FBgn0061515, exon 3 of 3) -1208 FBgn0052133 FBgn0052133 FBtr0075784 ptip protein_coding CG8478-S2-modencode_R2_peak_1360 chr3L 5180544 5180712 + 12 NA intron (FBgn0052423, intron 3 of 11) protein_coding-intron (FBgn0052423, intron 3 of 10) -2731 FBgn0052423 FBgn0052423 FBtr0301599 shep protein_coding CG8478-S2-modencode_R2_peak_2292 chr3R 19154101 19154229 + 12 NA intron (FBgn0003118, intron 3 of 8) protein_coding-intron (FBgn0003118, intron 3 of 8) 17719 FBgn0003118 FBgn0003118 FBtr0089715 pnt protein_coding CG8478-S2-modencode_R2_peak_2504 chr3R 26392986 26393104 + 12 NA intron (FBgn0082582, intron 1 of 6) protein_coding-intron (FBgn0082582, intron 2 of 7) -7124 FBgn0083991 FBgn0083991 FBtr0111047 CG34155 protein_coding CG8478-S2-modencode_R2_peak_1378 chr3L 6969783 6969940 + 12 NA exon (FBgn0047205, exon 1 of 3) ncRNA-exon (FBgn0047205, exon 1 of 3) 439 FBgn0047205 FBgn0047205 FBtr0076899 CR32385 ncRNA CG8478-S2-modencode_R2_peak_2080 chr3R 11235575 11235703 + 12 NA intron (FBgn0041188, intron 1 of 3) protein_coding-intron (FBgn0041188, intron 1 of 4) 466 FBgn0041188 FBgn0041188 FBtr0083101 Atx2 protein_coding CG8478-S2-modencode_R2_peak_2522 chr3R 26912116 26912265 + 12 NA Intergenic Intergenic 10850 FBgn0039816 FBgn0039816 FBtr0085741 CG11317 protein_coding CG8478-S2-modencode_R2_peak_164 chr2L 7452137 7452274 + 12 NA TTS (FBgn0041247) protein_coding-TTS (FBgn0041247) -1038 FBgn0025697 FBgn0025697 FBtr0079464 santa-maria protein_coding CG8478-S2-modencode_R2_peak_3278 chrX 19645015 19645276 + 12 NA TTS (FBgn0031068) protein_coding-TTS (FBgn0031068) 312 FBgn0031069 FBgn0031069 FBtr0074795 Pmp70 protein_coding CG8478-S2-modencode_R2_peak_1646 chr3L 17601593 17601727 + 12 NA intron (FBgn0000567, intron 1 of 7) protein_coding-intron (FBgn0000567, intron 1 of 7) 10765 FBgn0000567 FBgn0000567 FBtr0075204 Eip74EF protein_coding CG8478-S2-modencode_R2_peak_2054 chr3R 10514194 10514405 + 12 NA intron (FBgn0051314, intron 1 of 6) protein_coding-intron (FBgn0051314, intron 1 of 7) 8758 FBgn0051314 FBgn0051314 FBtr0301499 Neu3 protein_coding CG8478-S2-modencode_R2_peak_1043 chr2R 15309722 15309989 + 12 NA intron (FBgn0263391, intron 1 of 12) protein_coding-intron (FBgn0263391, intron 2 of 11) 2596 FBgn0263391 FBgn0263391 FBtr0309107 hts protein_coding CG8478-S2-modencode_R2_peak_1181 chr2R 20830235 20830395 + 12 NA promoter-TSS (FBgn0035083) protein_coding-promoter-TSS (FBgn0035083) -683 FBgn0035083 FBgn0035083 FBtr0100389 Tina-1 protein_coding CG8478-S2-modencode_R2_peak_91 chr2L 3632962 3633032 + 12 NA promoter-TSS (FBgn0000721) protein_coding-promoter-TSS (FBgn0000721) -860 FBgn0000721 FBgn0000721 FBtr0100363 for protein_coding CG8478-S2-modencode_R2_peak_1154 chr2R 19554526 19554667 + 12 NA promoter-TSS (FBgn0034886) protein_coding-promoter-TSS (FBgn0034886) -5389 FBgn0250870 FBgn0250870 FBtr0290304 CG42241 protein_coding CG8478-S2-modencode_R2_peak_312 chr2L 13571895 13572145 + 12 NA intron (FBgn0259984, intron 3 of 11) protein_coding-intron (FBgn0259984, intron 3 of 12) 21856 FBgn0259984 FBgn0259984 FBtr0301412 kuz protein_coding CG8478-S2-modencode_R2_peak_505 chr2R 2847715 2847848 + 12 NA intron (FBgn0066292, intron 2 of 4) protein_coding-intron (FBgn0053558, intron 2 of 15) 9891 FBgn0053349 FBgn0053349 FBtr0086169 ppk25 protein_coding CG8478-S2-modencode_R2_peak_1206 chr3L 550954 551029 + 12 NA intron (FBgn0035142, intron 2 of 10) protein_coding-intron (FBgn0035142, intron 2 of 10) -8060 FBgn0035141 FBgn0035141 FBtr0072564 Cypl protein_coding CG8478-S2-modencode_R2_peak_172 chr2L 7998301 7998372 + 12 NA promoter-TSS (FBgn0031971) protein_coding-promoter-TSS (FBgn0031971) -598 FBgn0031971 FBgn0031971 FBtr0079532 CG7224 protein_coding CG8478-S2-modencode_R2_peak_10 chr2L 202616 202773 + 12 NA exon (FBgn0016977, exon 11 of 11) protein_coding-exon (FBgn0016977, exon 11 of 11) -1085 FBgn0031231 FBgn0031231 FBtr0078124 mRpL10 protein_coding CG8478-S2-modencode_R2_peak_2084 chr3R 11477633 11477777 + 12 NA Intergenic Intergenic -14200 FBgn0053207 FBgn0053207 FBtr0083162 pxb protein_coding CG8478-S2-modencode_R2_peak_2414 chr3R 22721994 22722568 + 12 NA intron (FBgn0004359, intron 2 of 2) protein_coding-intron (FBgn0004359, intron 2 of 2) 14825 FBgn0004359 FBgn0004359 FBtr0085065 T48 protein_coding CG8478-S2-modencode_R2_peak_699 chr2R 6993961 6994152 + 12 NA exon (FBgn0040765, exon 1 of 5) protein_coding-exon (FBgn0040765, exon 1 of 5) 265 FBgn0040765 FBgn0040765 FBtr0088210 luna protein_coding CG8478-S2-modencode_R2_peak_2645 chrX 1148632 1148760 + 12 NA intron (FBgn0028550, intron 1 of 4) protein_coding-intron (FBgn0028550, intron 2 of 5) -14779 FBgn0026876 FBgn0026876 FBtr0070245 CG11403 protein_coding CG8478-S2-modencode_R2_peak_69 chr2L 2174613 2174758 + 12 NA intron (FBgn0000097, intron 1 of 4) protein_coding-intron (FBgn0000097, intron 1 of 3) 4064 FBgn0000097 FBgn0000097 FBtr0330660 aop protein_coding CG8478-S2-modencode_R2_peak_2543 chr3R 27875547 27875727 + 12 NA intron (FBgn0040206, intron 1 of 1) protein_coding-intron (FBgn0040206, intron 1 of 1) 2074 FBgn0040206 FBgn0040206 FBtr0305268 krz protein_coding CG8478-S2-modencode_R2_peak_3152 chrX 14719411 14719623 + 12 NA intron (FBgn0003301, intron 1 of 16) protein_coding-intron (FBgn0003301, intron 1 of 17) 421 FBgn0003301 FBgn0003301 FBtr0333655 rut protein_coding CG8478-S2-modencode_R2_peak_3210 chrX 16353320 16353450 + 12 NA exon (FBgn0264255, exon 31 of 31) protein_coding-exon (FBgn0264255, exon 31 of 31) 10675 FBgn0262734 FBgn0262734 FBtr0074281 Rbp2 protein_coding CG8478-S2-modencode_R2_peak_1039 chr2R 15302988 15303150 + 12 NA TTS (FBgn0028981) tRNA-TTS (FBgn0028981) 293 FBgn0050326 FBgn0050326 FBtr0086528 tRNA:CR30326 tRNA CG8478-S2-modencode_R2_peak_2510 chr3R 26607976 26608141 + 12 NA promoter-TSS (FBgn0004606) protein_coding-promoter-TSS (FBgn0004606) 9322 FBgn0262444 FBgn0262444 FBtr0304453 mir-1013 pre_miRNA CG8478-S2-modencode_R2_peak_2739 chrX 3299782 3299951 + 12 NA intron (FBgn0029657, intron 3 of 4) protein_coding-intron (FBgn0029657, intron 2 of 3) 21690 FBgn0052493 FBgn0052493 FBtr0070533 tRNA:CR32493 tRNA CG8478-S2-modencode_R2_peak_1482 chr3L 10638005 10638164 + 12 NA TTS (FBgn0036094) protein_coding-TTS (FBgn0036094) 1456 FBgn0036094 FBgn0036094 FBtr0076259 CG14153 protein_coding CG8478-S2-modencode_R2_peak_1774 chr3L 22938131 22938785 + 12 NA promoter-TSS (FBgn0037207) protein_coding-promoter-TSS (FBgn0037207) -637 FBgn0037207 FBgn0037207 FBtr0078563 Mes2 protein_coding CG8478-S2-modencode_R2_peak_1401 chr3L 7855344 7855675 + 12 NA intron (FBgn0016694, intron 1 of 5) protein_coding-intron (FBgn0016694, intron 1 of 4) 4960 FBgn0016694 FBgn0016694 FBtr0332080 Pdp1 protein_coding CG8478-S2-modencode_R2_peak_3109 chrX 12626725 12626846 + 12 NA intron (FBgn0263865, intron 2 of 10) protein_coding-intron (FBgn0263865, intron 1 of 9) 9692 FBgn0263865 FBgn0263865 FBtr0333766 Smr protein_coding CG8478-S2-modencode_R2_peak_961 chr2R 14227278 14227406 + 12 NA intron (FBgn0010575, intron 1 of 10) protein_coding-intron (FBgn0010575, intron 1 of 11) 17459 FBgn0010575 FBgn0010575 FBtr0329996 sbb protein_coding CG8478-S2-modencode_R2_peak_2959 chrX 9476326 9476430 + 12 NA Intergenic Intergenic -2370 FBgn0052699 FBgn0052699 FBtr0071369 CG32699 protein_coding CG8478-S2-modencode_R2_peak_1599 chr3L 16050569 16050647 + 12 NA intron (FBgn0005536, intron 2 of 17) protein_coding-intron (FBgn0005536, intron 2 of 15) 5549 FBgn0005536 FBgn0005536 FBtr0075441 Mbs protein_coding CG8478-S2-modencode_R2_peak_2272 chr3R 18353496 18353622 + 12 NA intron (FBgn0038981, intron 1 of 5) protein_coding-intron (FBgn0038981, intron 1 of 5) 824 FBgn0038981 FBgn0038981 FBtr0084289 CG5346 protein_coding CG8478-S2-modencode_R2_peak_2302 chr3R 19164048 19164240 + 12 NA intron (FBgn0003118, intron 2 of 8) protein_coding-intron (FBgn0003118, intron 2 of 8) 7740 FBgn0003118 FBgn0003118 FBtr0089715 pnt protein_coding CG8478-S2-modencode_R2_peak_239 chr2L 9494567 9494813 + 12 NA promoter-TSS (FBgn0032120) protein_coding-promoter-TSS (FBgn0032120) 106 FBgn0004868 FBgn0004868 FBtr0079862 Gdi protein_coding CG8478-S2-modencode_R2_peak_1477 chr3L 10501187 10501257 + 12 NA intron (FBgn0052062, intron 2 of 13) protein_coding-intron (FBgn0052062, intron 2 of 16) -7881 FBgn0052062 FBgn0052062 FBtr0305094 A2bp1 protein_coding CG8478-S2-modencode_R2_peak_1984 chr3R 6701651 6701783 + 12 NA promoter-TSS (FBgn0022359) protein_coding-promoter-TSS (FBgn0022359) -389 FBgn0022359 FBgn0022359 FBtr0082324 Sodh-2 protein_coding CG8478-S2-modencode_R2_peak_2897 chrX 7853286 7853705 + 12 NA promoter-TSS (FBgn0003656) protein_coding-promoter-TSS (FBgn0003656) 3398 FBgn0029987 FBgn0029987 FBtr0071099 CG15330 protein_coding CG8478-S2-modencode_R2_peak_1230 chr3L 656158 656333 + 12 NA intron (FBgn0035150, intron 3 of 6) protein_coding-intron (FBgn0035150, intron 3 of 6) 1882 FBgn0035150 FBgn0035150 FBtr0072557 Rev1 protein_coding CG8478-S2-modencode_R2_peak_572 chr2R 4535193 4535442 + 12 NA Intergenic Intergenic -1823 FBgn0003892 FBgn0003892 FBtr0089427 ptc protein_coding CG8478-S2-modencode_R2_peak_3259 chrX 19048982 19049055 + 12 NA exon (FBgn0261461, exon 2 of 8) protein_coding-exon (FBgn0261461, exon 2 of 8) -8241 FBgn0261461 FBgn0261461 FBtr0299625 RhoGAP18B protein_coding CG8478-S2-modencode_R2_peak_1238 chr3L 841638 841868 + 12 NA promoter-TSS (FBgn0035166) protein_coding-promoter-TSS (FBgn0035166) 302 FBgn0035167 FBgn0035167 FBtr0331401 Gr61a protein_coding CG8478-S2-modencode_R2_peak_3175 chrX 15347461 15347643 + 12 NA promoter-TSS (FBgn0030638) protein_coding-promoter-TSS (FBgn0030638) 48 FBgn0030638 FBgn0030638 FBtr0074031 CG11655 protein_coding CG8478-S2-modencode_R2_peak_2733 chrX 3266870 3267413 + 12 NA promoter-TSS (FBgn0262656) protein_coding-promoter-TSS (FBgn0262656) -51 FBgn0262656 FBgn0262656 FBtr0070525 dm protein_coding CG8478-S2-modencode_R2_peak_2452 chr3R 25113893 25113980 + 12 NA Intergenic Intergenic 9015 FBgn0039659 FBgn0039659 FBtr0085439 CG14506 protein_coding CG8478-S2-modencode_R2_peak_3249 chrX 18671033 18671205 + 12 NA intron (FBgn0030955, intron 1 of 2) protein_coding-intron (FBgn0030955, intron 1 of 2) -2616 FBgn0030955 FBgn0030955 FBtr0074632 CG6891 protein_coding CG8478-S2-modencode_R2_peak_979 chr2R 14299483 14300273 + 12 NA promoter-TSS (FBgn0027835) protein_coding-promoter-TSS (FBgn0027835) 367 FBgn0027835 FBgn0027835 FBtr0086681 Dp1 protein_coding CG8478-S2-modencode_R2_peak_1356 chr3L 5166796 5166970 + 12 NA intron (FBgn0052423, intron 3 of 11) protein_coding-intron (FBgn0052423, intron 3 of 10) 11014 FBgn0052423 FBgn0052423 FBtr0301599 shep protein_coding CG8478-S2-modencode_R2_peak_2492 chr3R 26160173 26160498 + 12 NA intron (FBgn0010113, intron 2 of 5) protein_coding-intron (FBgn0010113, intron 2 of 5) -27976 FBgn0085329 FBgn0085329 FBtr0305269 CG34300 protein_coding CG8478-S2-modencode_R2_peak_1730 chr3L 20336952 20337079 + 12 NA exon (FBgn0036970, exon 5 of 5) protein_coding-exon (FBgn0036970, exon 5 of 5) 1281 FBgn0036970 FBgn0036970 FBtr0331816 Spn77Bc protein_coding CG8478-S2-modencode_R2_peak_2156 chr3R 13444893 13445049 + 12 NA promoter-TSS (FBgn0051570) tRNA-promoter-TSS (FBgn0051570) 147 FBgn0038528 FBgn0038528 FBtr0083467 CG14326 protein_coding CG8478-S2-modencode_R2_peak_982 chr2R 14390965 14391324 + 12 NA promoter-TSS (FBgn0034354) protein_coding-promoter-TSS (FBgn0034354) 29 FBgn0034354 FBgn0034354 FBtr0086697 CG5224 protein_coding CG8478-S2-modencode_R2_peak_2077 chr3R 11135859 11135988 + 12 NA promoter-TSS (FBgn0004117) protein_coding-promoter-TSS (FBgn0004117) -476 FBgn0004117 FBgn0004117 FBtr0333919 Tm2 protein_coding CG8478-S2-modencode_R2_peak_2129 chr3R 12249135 12249409 + 12 NA Intergenic Intergenic 1510 FBgn0051497 FBgn0051497 FBtr0083317 tRNA:CR31497 tRNA CG8478-S2-modencode_R2_peak_2476 chr3R 25840234 25840363 + 12 NA TTS (FBgn0039738) protein_coding-TTS (FBgn0039738) 788 FBgn0039737 FBgn0039737 FBtr0085603 CG7920 protein_coding CG8478-S2-modencode_R2_peak_744 chr2R 7519181 7519367 + 12 NA intron (FBgn0033638, intron 1 of 7) protein_coding-intron (FBgn0033638, intron 1 of 7) 9144 FBgn0033638 FBgn0033638 FBtr0088089 CG9005 protein_coding CG8478-S2-modencode_R2_peak_1140 chr2R 18565978 18566253 + 12 NA Intergenic Intergenic 7858 FBgn0034763 FBgn0034763 FBtr0071868 RYBP protein_coding CG8478-S2-modencode_R2_peak_162 chr2L 7434305 7434531 + 12 NA promoter-TSS (FBgn0031913) protein_coding-promoter-TSS (FBgn0031913) -902 FBgn0031913 FBgn0031913 FBtr0079466 CG5958 protein_coding CG8478-S2-modencode_R2_peak_2012 chr3R 8267335 8267547 + 12 NA promoter-TSS (FBgn0086687) protein_coding-promoter-TSS (FBgn0086687) -2322 FBgn0086687 FBgn0086687 FBtr0082630 desat1 protein_coding CG8478-S2-modencode_R2_peak_2596 chrU 4016211 4016322 + 12 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1915 chr3R 5173067 5173264 + 12 NA intron (FBgn0263749, intron 2 of 5) protein_coding-intron (FBgn0263749, intron 1 of 4) 5570 FBgn0263749 FBgn0263749 FBtr0310401 CG43674 protein_coding CG8478-S2-modencode_R2_peak_2360 chr3R 21251169 21251292 + 12 NA intron (FBgn0004509, intron 1 of 9) protein_coding-intron (FBgn0004509, intron 2 of 11) -24863 FBgn0051439 FBgn0051439 FBtr0084845 Muc96D protein_coding CG8478-S2-modencode_R2_peak_2155 chr3R 13429468 13429705 + 12 NA Intergenic Intergenic -2238 FBgn0038524 FBgn0038524 FBtr0305308 sll protein_coding CG8478-S2-modencode_R2_peak_1082 chr2R 17022018 17022236 + 12 NA intron (FBgn0034590, intron 2 of 5) protein_coding-intron (FBgn0034590, intron 2 of 5) 6043 FBgn0002736 FBgn0002736 FBtr0071569 mago protein_coding CG8478-S2-modencode_R2_peak_1844 chr3R 2935589 2935756 + 12 NA intron (FBgn0261238, intron 5 of 9) protein_coding-intron (FBgn0261238, intron 5 of 9) -1533 FBgn0261238 FBgn0261238 FBtr0081614 Alh protein_coding CG8478-S2-modencode_R2_peak_2242 chr3R 17029560 17029916 + 12 NA promoter-TSS (FBgn0264357) protein_coding-promoter-TSS (FBgn0264357) -11063 FBgn0038868 FBgn0038868 FBtr0084049 CG5862 protein_coding CG8478-S2-modencode_R2_peak_605 chr2R 5845741 5845958 + 12 NA TTS (FBgn0033467) protein_coding-TTS (FBgn0033467) 501 FBgn0011656 FBgn0011656 FBtr0088446 Mef2 protein_coding CG8478-S2-modencode_R2_peak_1990 chr3R 7474660 7474902 + 12 NA intron (FBgn0262081, intron 1 of 8) protein_coding-intron (FBgn0262081, intron 1 of 8) -1929 FBgn0037926 FBgn0037926 FBtr0082420 Elp1 protein_coding CG8478-S2-modencode_R2_peak_3230 chrX 17467170 17467264 + 12 NA exon (FBgn0028343, exon 7 of 10) protein_coding-exon (FBgn0028343, exon 7 of 10) 2917 FBgn0028343 FBgn0028343 FBtr0301415 l(1)G0222 protein_coding CG8478-S2-modencode_R2_peak_2168 chr3R 13994250 13994504 + 12 NA promoter-TSS (FBgn0042693) protein_coding-promoter-TSS (FBgn0042693) 214 FBgn0042693 FBgn0042693 FBtr0083555 PP2A-B' protein_coding CG8478-S2-modencode_R2_peak_2939 chrX 9363944 9364668 + 12 NA intron (FBgn0261260, intron 2 of 2) protein_coding-intron (FBgn0261260, intron 2 of 14) 25915 FBgn0261260 FBgn0261260 FBtr0302154 mgl protein_coding CG8478-S2-modencode_R2_peak_1579 chr3L 15156179 15156301 + 12 NA TTS (FBgn0036488) protein_coding-TTS (FBgn0036488) 488 FBgn0036489 FBgn0036489 FBtr0075645 CG7011 protein_coding CG8478-S2-modencode_R2_peak_1202 chr3L 544387 544737 + 12 NA intron (FBgn0035142, intron 1 of 10) protein_coding-intron (FBgn0035142, intron 1 of 10) -1631 FBgn0035141 FBgn0035141 FBtr0072564 Cypl protein_coding CG8478-S2-modencode_R2_peak_746 chr2R 7523711 7523808 + 12 NA intron (FBgn0033638, intron 1 of 7) protein_coding-intron (FBgn0033638, intron 1 of 7) 4659 FBgn0033638 FBgn0033638 FBtr0088089 CG9005 protein_coding CG8478-S2-modencode_R2_peak_2839 chrX 6118511 6119106 + 12 NA promoter-TSS (FBgn0262730) protein_coding-promoter-TSS (FBgn0262730) 388 FBgn0003514 FBgn0003514 FBtr0070877 sqh protein_coding CG8478-S2-modencode_R2_peak_297 chr2L 12824145 12824262 + 12 NA Intergenic Intergenic -1416 FBgn0015399 FBgn0015399 FBtr0332210 kek1 protein_coding CG8478-S2-modencode_R2_peak_2749 chrX 3566963 3567099 + 12 NA intron (FBgn0023215, intron 1 of 8) protein_coding-intron (FBgn0023215, intron 1 of 8) -1496 FBgn0023216 FBgn0023216 FBtr0307279 Parg protein_coding CG8478-S2-modencode_R2_peak_355 chr2L 17378591 17378700 + 12 NA intron (FBgn0032633, intron 1 of 7) protein_coding-intron (FBgn0032633, intron 1 of 6) 5502 FBgn0032633 FBgn0032633 FBtr0080969 Lrch protein_coding CG8478-S2-modencode_R2_peak_2224 chr3R 16659961 16660119 + 12 NA intron (FBgn0053094, intron 1 of 9) protein_coding-intron (FBgn0053094, intron 1 of 9) 1533 FBgn0053094 FBgn0053094 FBtr0083966 Synd protein_coding CG8478-S2-modencode_R2_peak_785 chr2R 9119624 9119758 + 12 NA TTS (FBgn0033813) protein_coding-TTS (FBgn0033813) 1603 FBgn0033813 FBgn0033813 FBtr0087742 fsd protein_coding CG8478-S2-modencode_R2_peak_179 chr2L 8094553 8094750 + 12 NA intron (FBgn0261822, intron 2 of 7) protein_coding-intron (FBgn0261822, intron 2 of 6) 6347 FBgn0261822 FBgn0261822 FBtr0079573 Bsg protein_coding CG8478-S2-modencode_R2_peak_595 chr2R 5640850 5640977 + 12 NA promoter-TSS (FBgn0005614) protein_coding-promoter-TSS (FBgn0005614) -289 FBgn0005614 FBgn0005614 FBtr0088473 trpl protein_coding CG8478-S2-modencode_R2_peak_1566 chr3L 14541400 14541501 + 12 NA intron (FBgn0036428, intron 1 of 4) protein_coding-intron (FBgn0036428, intron 1 of 4) 2625 FBgn0036428 FBgn0036428 FBtr0075723 CG9238 protein_coding CG8478-S2-modencode_R2_peak_1452 chr3L 9456078 9456148 + 12 NA promoter-TSS (FBgn0052043) protein_coding-promoter-TSS (FBgn0052043) -305 FBgn0052043 FBgn0052043 FBtr0333854 CG32043 protein_coding CG8478-S2-modencode_R2_peak_2650 chrX 1180115 1180478 + 12 NA Intergenic Intergenic -1027 FBgn0025642 FBgn0025642 FBtr0070206 CG32812 protein_coding CG8478-S2-modencode_R2_peak_104 chr2L 4372888 4372958 + 12 NA intron (FBgn0026319, intron 3 of 3) protein_coding-intron (FBgn0026319, intron 1 of 1) -5617 FBgn0026319 FBgn0026319 FBtr0290244 Traf4 protein_coding CG8478-S2-modencode_R2_peak_885 chr2R 12093457 12093583 + 12 NA promoter-TSS (FBgn0034091) protein_coding-promoter-TSS (FBgn0034091) 1691 FBgn0050237 FBgn0050237 FBtr0087198 tRNA:CR30237 tRNA CG8478-S2-modencode_R2_peak_951 chr2R 14058651 14058833 + 12 NA exon (FBgn0027836, exon 2 of 5) protein_coding-exon (FBgn0027836, exon 2 of 5) 233 FBgn0027836 FBgn0027836 FBtr0086773 Dgp-1 protein_coding CG8478-S2-modencode_R2_peak_124 chr2L 5305086 5305365 + 12 NA promoter-TSS (FBgn0016076) protein_coding-promoter-TSS (FBgn0016076) -497 FBgn0016076 FBgn0016076 FBtr0300020 vri protein_coding CG8478-S2-modencode_R2_peak_2998 chrX 10160875 10161049 + 12 NA Intergenic Intergenic -1666 FBgn0040942 FBgn0040942 FBtr0071481 CG12643 protein_coding CG8478-S2-modencode_R2_peak_1091 chr2R 17263794 17264049 + 12 NA intron (FBgn0000395, intron 1 of 6) protein_coding-intron (FBgn0000395, intron 1 of 6) 3046 FBgn0000395 FBgn0000395 FBtr0071610 cv-2 protein_coding CG8478-S2-modencode_R2_peak_235 chr2L 9393341 9393491 + 12 NA intron (FBgn0085395, intron 2 of 10) protein_coding-intron (FBgn0085395, intron 2 of 11) 4572 FBgn0032115 FBgn0032115 FBtr0079813 CG4438 protein_coding CG8478-S2-modencode_R2_peak_315 chr2L 13904044 13904255 + 12 NA intron (FBgn0019890, intron 1 of 5) protein_coding-intron (FBgn0019890, intron 1 of 5) 210 FBgn0019890 FBgn0019890 FBtr0080562 Smg5 protein_coding CG8478-S2-modencode_R2_peak_2098 chr3R 11852963 11853092 + 12 NA intron (FBgn0003117, intron 1 of 3) protein_coding-intron (FBgn0003117, intron 1 of 3) -7085 FBgn0003117 FBgn0003117 FBtr0083221 pnr protein_coding CG8478-S2-modencode_R2_peak_301 chr2L 13068378 13068665 + 12 NA Intergenic Intergenic -8406 FBgn0262160 FBgn0262160 FBtr0089956 CG9932 protein_coding CG8478-S2-modencode_R2_peak_1527 chr3L 11616532 11616670 + 12 NA intron (FBgn0086254, intron 2 of 5) protein_coding-intron (FBgn0086254, intron 2 of 6) 214 FBgn0086254 FBgn0086254 FBtr0331547 CG6084 protein_coding CG8478-S2-modencode_R2_peak_2691 chrX 2186852 2186988 + 12 NA exon (FBgn0023526, exon 1 of 2) protein_coding-exon (FBgn0023526, exon 1 of 2) 524 FBgn0023526 FBgn0023526 FBtr0070408 CG2865 protein_coding CG8478-S2-modencode_R2_peak_1166 chr2R 19935490 19935631 + 12 NA intron (FBgn0028552, intron 4 of 6) protein_coding-intron (FBgn0028552, intron 4 of 6) 852 FBgn0028552 FBgn0028552 FBtr0072187 gammaSnap protein_coding CG8478-S2-modencode_R2_peak_1515 chr3L 11283618 11283700 + 12 NA intron (FBgn0036152, intron 3 of 3) protein_coding-intron (FBgn0036152, intron 2 of 2) 5360 FBgn0036152 FBgn0036152 FBtr0076183 CG6175 protein_coding CG8478-S2-modencode_R2_peak_3174 chrX 15227201 15227645 + 12 NA promoter-TSS (FBgn0026428) protein_coding-promoter-TSS (FBgn0026428) 80 FBgn0026428 FBgn0026428 FBtr0301774 HDAC6 protein_coding CG8478-S2-modencode_R2_peak_2109 chr3R 12034167 12034670 + 12 NA Intergenic Intergenic -3445 FBgn0010438 FBgn0010438 FBtr0083277 mtSSB protein_coding CG8478-S2-modencode_R2_peak_2331 chr3R 20051734 20051858 + 12 NA promoter-TSS (FBgn0039170) protein_coding-promoter-TSS (FBgn0039170) 860 FBgn0039169 FBgn0039169 FBtr0330382 Spps protein_coding CG8478-S2-modencode_R2_peak_547 chr2R 3800301 3800434 + 12 NA intron (FBgn0050377, intron 4 of 4) protein_coding-intron (FBgn0050377, intron 4 of 4) 3601 FBgn0033232 FBgn0033232 FBtr0088888 CG12159 protein_coding CG8478-S2-modencode_R2_peak_2655 chrX 1373040 1373147 + 12 NA TTS (FBgn0260986) protein_coding-TTS (FBgn0260986) 508 FBgn0025381 FBgn0025381 FBtr0070259 rush protein_coding CG8478-S2-modencode_R2_peak_3013 chrX 10358055 10358304 + 12 NA exon (FBgn0261710, exon 6 of 6) protein_coding-exon (FBgn0261710, exon 6 of 6) 3410 FBgn0083167 FBgn0083167 FBtr0071449 Neb-cGP protein_coding CG8478-S2-modencode_R2_peak_2857 chrX 6699038 6699168 + 12 NA promoter-TSS (FBgn0029903) protein_coding-promoter-TSS (FBgn0029903) 1366 FBgn0029903 FBgn0029903 FBtr0070968 pod1 protein_coding CG8478-S2-modencode_R2_peak_2815 chrX 4970022 4970253 + 12 NA TTS (FBgn0052767) protein_coding-TTS (FBgn0052767) 6921 FBgn0052767 FBgn0052767 FBtr0300994 CG32767 protein_coding CG8478-S2-modencode_R2_peak_1664 chr3L 17983014 17983316 + 12 NA intron (FBgn0000568, intron 4 of 7) protein_coding-intron (FBgn0000568, intron 2 of 5) 13013 FBgn0086081 FBgn0086081 FBtr0114357 snoRNA:Me28S-A30 snoRNA CG8478-S2-modencode_R2_peak_2842 chrX 6173329 6173662 + 12 NA promoter-TSS (FBgn0086558) protein_coding-promoter-TSS (FBgn0086558) -190 FBgn0086558 FBgn0086558 FBtr0070933 Ubi-p5E protein_coding CG8478-S2-modencode_R2_peak_3188 chrX 15647953 15648149 + 12 NA intron (FBgn0030685, intron 9 of 12) protein_coding-intron (FBgn0030685, intron 9 of 12) -2350 FBgn0030684 FBgn0030684 FBtr0074088 CG8260 protein_coding CG8478-S2-modencode_R2_peak_888 chr2R 12108415 12108929 + 12 NA promoter-TSS (FBgn0264496) ncRNA-promoter-TSS (FBgn0264496) -469 FBgn0264496 FBgn0264496 FBtr0332854 CR43898 ncRNA CG8478-S2-modencode_R2_peak_1746 chr3L 21262300 21262453 + 12 NA promoter-TSS (FBgn0037063) protein_coding-promoter-TSS (FBgn0037063) -941 FBgn0037063 FBgn0037063 FBtr0078417 CG9391 protein_coding CG8478-S2-modencode_R2_peak_1819 chr3R 2177337 2177477 + 12 NA intron (FBgn0014001, intron 1 of 7) protein_coding-intron (FBgn0014001, intron 1 of 7) 779 FBgn0014001 FBgn0014001 FBtr0081716 Pak protein_coding CG8478-S2-modencode_R2_peak_1598 chr3L 16048927 16049046 + 12 NA intron (FBgn0005536, intron 2 of 17) protein_coding-intron (FBgn0005536, intron 2 of 15) 3927 FBgn0005536 FBgn0005536 FBtr0075441 Mbs protein_coding CG8478-S2-modencode_R2_peak_2108 chr3R 12032679 12032852 + 12 NA Intergenic Intergenic -1792 FBgn0010438 FBgn0010438 FBtr0083277 mtSSB protein_coding CG8478-S2-modencode_R2_peak_1853 chr3R 3315803 3316008 + 12 NA intron (FBgn0015569, intron 1 of 3) protein_coding-intron (FBgn0015569, intron 1 of 3) -1432 FBgn0015569 FBgn0015569 FBtr0305911 alpha-Est10 protein_coding CG8478-S2-modencode_R2_peak_108 chr2L 4891931 4892001 + 12 NA promoter-TSS (FBgn0031645) protein_coding-promoter-TSS (FBgn0031645) -149 FBgn0031645 FBgn0031645 FBtr0077391 CG3036 protein_coding CG8478-S2-modencode_R2_peak_3100 chrX 12612807 12613158 + 12 NA promoter-TSS (FBgn0264678) ncRNA-promoter-TSS (FBgn0264678) -489 FBgn0264678 FBgn0264678 FBtr0333775 CR43963 ncRNA CG8478-S2-modencode_R2_peak_1944 chr3R 5758249 5758428 + 12 NA intron (FBgn0263097, intron 2 of 6) protein_coding-intron (FBgn0263097, intron 2 of 6) 53444 FBgn0037770 FBgn0037770 FBtr0082150 Art4 protein_coding CG8478-S2-modencode_R2_peak_996 chr2R 14541138 14541331 + 12 NA promoter-TSS (FBgn0034371) protein_coding-promoter-TSS (FBgn0034371) -955 FBgn0034371 FBgn0034371 FBtr0086658 SP2637 protein_coding CG8478-S2-modencode_R2_peak_965 chr2R 14231309 14231426 + 12 NA intron (FBgn0010575, intron 1 of 10) protein_coding-intron (FBgn0010575, intron 1 of 11) 13434 FBgn0010575 FBgn0010575 FBtr0329996 sbb protein_coding CG8478-S2-modencode_R2_peak_2670 chrX 1803716 1803793 + 12 NA promoter-TSS (FBgn0023511) protein_coding-promoter-TSS (FBgn0023511) 797 FBgn0023510 FBgn0023510 FBtr0070316 Rbcn-3B protein_coding CG8478-S2-modencode_R2_peak_3216 chrX 16504723 16504838 + 12 NA promoter-TSS (FBgn0025743) protein_coding-promoter-TSS (FBgn0025743) 43 FBgn0025743 FBgn0025743 FBtr0074285 mbt protein_coding CG8478-S2-modencode_R2_peak_2010 chr3R 8226311 8226573 + 12 NA exon (FBgn0038035, exon 2 of 4) protein_coding-exon (FBgn0038035, exon 2 of 4) 1119 FBgn0038035 FBgn0038035 FBtr0082600 lig3 protein_coding CG8478-S2-modencode_R2_peak_2892 chrX 7816997 7817106 + 12 NA exon (FBgn0029979, exon 4 of 4) protein_coding-exon (FBgn0029979, exon 4 of 4) 2609 FBgn0260858 FBgn0260858 FBtr0071093 Ykt6 protein_coding CG8478-S2-modencode_R2_peak_681 chr2R 6967828 6968076 + 12 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -5139 FBgn0262817 FBgn0262817 FBtr0306049 CG43188 protein_coding CG8478-S2-modencode_R2_peak_1365 chr3L 5347655 5347848 + 12 NA exon (FBgn0016031, exon 1 of 5) protein_coding-exon (FBgn0016031, exon 1 of 5) 695 FBgn0016031 FBgn0016031 FBtr0077161 lama protein_coding CG8478-S2-modencode_R2_peak_775 chr2R 8893231 8893311 + 12 NA exon (FBgn0008654, exon 6 of 6) protein_coding-exon (FBgn0008654, exon 6 of 6) 9265 FBgn0008654 FBgn0008654 FBtr0087793 Su(z)2 protein_coding CG8478-S2-modencode_R2_peak_2072 chr3R 11021137 11021221 + 12 NA intron (FBgn0038296, intron 2 of 10) protein_coding-intron (FBgn0038296, intron 2 of 10) 598 FBgn0038296 FBgn0038296 FBtr0306246 CG6752 protein_coding CG8478-S2-modencode_R2_peak_1031 chr2R 15244595 15245106 + 12 NA promoter-TSS (FBgn0034436) protein_coding-promoter-TSS (FBgn0034436) -820 FBgn0050127 FBgn0050127 FBtr0332919 CG30127 protein_coding CG8478-S2-modencode_R2_peak_1793 chr3R 356757 356920 + 12 NA intron (FBgn0085386, intron 4 of 14) protein_coding-intron (FBgn0085386, intron 4 of 13) -2179 FBgn0051526 FBgn0051526 FBtr0303865 CG31526 protein_coding CG8478-S2-modencode_R2_peak_1280 chr3L 3091611 3091985 + 12 NA TTS (FBgn0003938) snRNA-TTS (FBgn0003938) 997 FBgn0003938 FBgn0003938 FBtr0073017 snRNA:U5:63BC snRNA CG8478-S2-modencode_R2_peak_531 chr2R 3553510 3553731 + 12 NA TTS (FBgn0033204) protein_coding-TTS (FBgn0033204) 282 FBgn0033205 FBgn0033205 FBtr0088923 CG2064 protein_coding CG8478-S2-modencode_R2_peak_248 chr2L 10203034 10203271 + 12 NA intron (FBgn0085188, intron 2 of 2) protein_coding-intron (FBgn0085188, intron 2 of 2) 1168 FBgn0085188 FBgn0085188 FBtr0112350 CG34159 protein_coding CG8478-S2-modencode_R2_peak_2633 chrX 516854 516993 + 12 NA promoter-TSS (FBgn0025640) protein_coding-promoter-TSS (FBgn0025640) -577 FBgn0025640 FBgn0025640 FBtr0070115 CG13369 protein_coding CG8478-S2-modencode_R2_peak_1993 chr3R 7495433 7495672 + 12 NA exon (FBgn0259227, exon 2 of 5) protein_coding-exon (FBgn0259227, exon 2 of 5) -4389 FBgn0037930 FBgn0037930 FBtr0082423 CG14715 protein_coding CG8478-S2-modencode_R2_peak_1415 chr3L 8083723 8083937 + 12 NA exon (FBgn0035833, exon 2 of 8) protein_coding-exon (FBgn0035833, exon 2 of 8) 1056 FBgn0035833 FBgn0035833 FBtr0076738 CG7565 protein_coding CG8478-S2-modencode_R2_peak_1590 chr3L 15589541 15590055 + 12 NA intron (FBgn0036518, intron 1 of 4) protein_coding-intron (FBgn0036518, intron 1 of 5) 7838 FBgn0036518 FBgn0036518 FBtr0075568 RhoGAP71E protein_coding CG8478-S2-modencode_R2_peak_3300 chrX 21046048 21046284 + 12 NA Intergenic Intergenic -18114 FBgn0031163 FBgn0031163 FBtr0077256 CG14579 protein_coding CG8478-S2-modencode_R2_peak_3219 chrX 16686715 16687326 + 12 NA intron (FBgn0030790, intron 1 of 4) protein_coding-intron (FBgn0030790, intron 1 of 4) 866 FBgn0030790 FBgn0030790 FBtr0074332 CG4768 protein_coding CG8478-S2-modencode_R2_peak_1165 chr2R 19933005 19933218 + 12 NA intron (FBgn0011726, intron 1 of 3) protein_coding-intron (FBgn0011726, intron 1 of 3) 1248 FBgn0011726 FBgn0011726 FBtr0072188 tsr protein_coding CG8478-S2-modencode_R2_peak_507 chr2R 2882520 2882654 + 12 NA TTS (FBgn0050159) protein_coding-TTS (FBgn0050159) 2396 FBgn0050159 FBgn0050159 FBtr0089760 CG30159 protein_coding CG8478-S2-modencode_R2_peak_2050 chr3R 10450177 10450367 + 12 NA intron (FBgn0003169, intron 1 of 5) protein_coding-intron (FBgn0003169, intron 1 of 5) 1153 FBgn0003169 FBgn0003169 FBtr0330227 put protein_coding CG8478-S2-modencode_R2_peak_498 chr2R 2637111 2637472 + 12 NA TTS (FBgn0042083) protein_coding-TTS (FBgn0042083) -1879 FBgn0027066 FBgn0027066 FBtr0086130 Eb1 protein_coding CG8478-S2-modencode_R2_peak_2790 chrX 3999835 3999958 + 12 NA promoter-TSS (FBgn0026084) protein_coding-promoter-TSS (FBgn0026084) 1519 FBgn0000221 FBgn0000221 FBtr0070638 brn protein_coding CG8478-S2-modencode_R2_peak_2255 chr3R 17481158 17481268 + 12 NA intron (FBgn0011766, intron 1 of 7) protein_coding-intron (FBgn0011766, intron 1 of 7) 7467 FBgn0038893 FBgn0038893 FBtr0084116 CG6353 protein_coding CG8478-S2-modencode_R2_peak_154 chr2L 7029227 7029297 + 12 NA TTS (FBgn0031881) protein_coding-TTS (FBgn0031881) 1668 FBgn0031881 FBgn0031881 FBtr0079389 CG3476 protein_coding CG8478-S2-modencode_R2_peak_2453 chr3R 25116517 25116599 + 12 NA Intergenic Intergenic 6393 FBgn0039659 FBgn0039659 FBtr0085439 CG14506 protein_coding CG8478-S2-modencode_R2_peak_1200 chr3L 530480 530585 + 12 NA intron (FBgn0001316, intron 1 of 16) protein_coding-intron (FBgn0001316, intron 1 of 18) 2193 FBgn0085298 FBgn0085298 FBtr0112464 CG34269 protein_coding CG8478-S2-modencode_R2_peak_314 chr2L 13640845 13641176 + 12 NA intron (FBgn0028546, intron 3 of 4) protein_coding-intron (FBgn0028546, intron 3 of 4) 1350 FBgn0028546 FBgn0028546 FBtr0080511 ics protein_coding CG8478-S2-modencode_R2_peak_2341 chr3R 20382751 20382850 + 12 NA promoter-TSS (FBgn0004190) snRNA-promoter-TSS (FBgn0004190) -137 FBgn0004190 FBgn0004190 FBtr0084652 snRNA:U6:96Ac snRNA CG8478-S2-modencode_R2_peak_3042 chrX 10695094 10695249 + 12 NA intron (FBgn0262735, intron 1 of 5) protein_coding-intron (FBgn0262735, intron 2 of 5) 12955 FBgn0262735 FBgn0262735 FBtr0073419 Imp protein_coding CG8478-S2-modencode_R2_peak_3144 chrX 13708891 13709069 + 12 NA intron (FBgn0030529, intron 1 of 3) protein_coding-intron (FBgn0030529, intron 1 of 3) 1921 FBgn0030529 FBgn0030529 FBtr0073835 Clic protein_coding CG8478-S2-modencode_R2_peak_2237 chr3R 16975893 16976198 + 12 NA intron (FBgn0264357, intron 1 of 12) protein_coding-intron (FBgn0264357, intron 1 of 12) -6039 FBgn0264357 FBgn0264357 FBtr0110937 SNF4Agamma protein_coding CG8478-S2-modencode_R2_peak_927 chr2R 13331551 13331731 + 12 NA intron (FBgn0027506, intron 1 of 5) protein_coding-intron (FBgn0027506, intron 1 of 5) 802 FBgn0027506 FBgn0027506 FBtr0086959 EDTP protein_coding CG8478-S2-modencode_R2_peak_1747 chr3L 21270110 21270293 + 12 NA promoter-TSS (FBgn0012034) protein_coding-promoter-TSS (FBgn0012034) 2880 FBgn0012034 FBgn0012034 FBtr0078414 AcCoAS protein_coding CG8478-S2-modencode_R2_peak_1702 chr3L 18860779 18861008 + 12 NA promoter-TSS (FBgn0036819) protein_coding-promoter-TSS (FBgn0036819) 22 FBgn0036819 FBgn0036819 FBtr0333708 dysb protein_coding CG8478-S2-modencode_R2_peak_281 chr2L 12511607 12511752 + 12 NA intron (FBgn0259176, intron 5 of 6) protein_coding-intron (FBgn0259176, intron 6 of 7) 3571 FBgn0263458 FBgn0263458 FBtr0309757 snoRNA:CG43051-a snoRNA CG8478-S2-modencode_R2_peak_459 chr2R 1610661 1610814 + 12 NA intron (FBgn0000099, intron 1 of 7) protein_coding-intron (FBgn0000099, intron 1 of 7) -6183 FBgn0000099 FBgn0000099 FBtr0300504 ap protein_coding CG8478-S2-modencode_R2_peak_2743 chrX 3324368 3324510 + 12 NA intron (FBgn0029657, intron 1 of 3) protein_coding-intron (FBgn0029657, intron 1 of 3) -2883 FBgn0052493 FBgn0052493 FBtr0070533 tRNA:CR32493 tRNA CG8478-S2-modencode_R2_peak_1689 chr3L 18774980 18775111 + 12 NA intron (FBgn0001078, intron 2 of 9) protein_coding-intron (FBgn0001078, intron 2 of 9) -16201 FBgn0001078 FBgn0001078 FBtr0075087 ftz-f1 protein_coding CG8478-S2-modencode_R2_peak_55 chr2L 1885161 1885316 + 12 NA exon (FBgn0031374, exon 1 of 19) protein_coding-exon (FBgn0031374, exon 1 of 19) 616 FBgn0031374 FBgn0031374 FBtr0110882 CG7337 protein_coding CG8478-S2-modencode_R2_peak_1717 chr3L 19782582 19782752 + 12 NA intron (FBgn0261688, intron 2 of 17) protein_coding-intron (FBgn0261360, intron 2 of 17) 4002 FBgn0261688 FBgn0261688 FBtr0302280 Gyc76C protein_coding CG8478-S2-modencode_R2_peak_2165 chr3R 13540518 13540622 + 12 NA intron (FBgn0261885, intron 2 of 15) protein_coding-intron (FBgn0261885, intron 2 of 15) 3489 FBgn0261885 FBgn0261885 FBtr0301487 osa protein_coding CG8478-S2-modencode_R2_peak_2201 chr3R 15467912 15468031 + 12 NA exon (FBgn0038721, exon 1 of 14) protein_coding-exon (FBgn0038721, exon 1 of 14) 489 FBgn0038721 FBgn0038721 FBtr0083806 CG16718 protein_coding CG8478-S2-modencode_R2_peak_2173 chr3R 14071579 14071701 + 12 NA intron (FBgn0020238, intron 1 of 3) protein_coding-intron (FBgn0020238, intron 1 of 3) 3387 FBgn0020238 FBgn0020238 FBtr0083567 14-3-3epsilon protein_coding CG8478-S2-modencode_R2_peak_1529 chr3L 11701133 11701277 + 12 NA promoter-TSS (FBgn0036196) protein_coding-promoter-TSS (FBgn0036196) 448 FBgn0036196 FBgn0036196 FBtr0076125 CG11658 protein_coding CG8478-S2-modencode_R2_peak_220 chr2L 8740425 8740546 + 12 NA exon (FBgn0003209, exon 1 of 9) protein_coding-exon (FBgn0003209, exon 1 of 9) 175 FBgn0003209 FBgn0003209 FBtr0079746 raw protein_coding CG8478-S2-modencode_R2_peak_2026 chr3R 8836661 8836931 + 12 NA promoter-TSS (FBgn0020496) protein_coding-promoter-TSS (FBgn0020496) 214 FBgn0038110 FBgn0038110 FBtr0082719 CG8031 protein_coding CG8478-S2-modencode_R2_peak_1691 chr3L 18780125 18780253 + 12 NA intron (FBgn0001078, intron 2 of 9) protein_coding-intron (FBgn0001078, intron 2 of 9) -21345 FBgn0001078 FBgn0001078 FBtr0075087 ftz-f1 protein_coding CG8478-S2-modencode_R2_peak_1303 chr3L 3414714 3414887 + 12 NA intron (FBgn0014388, intron 1 of 1) protein_coding-intron (FBgn0014388, intron 1 of 1) -2613 FBgn0262260 FBgn0262260 FBtr0304360 mir-2282 pre_miRNA CG8478-S2-modencode_R2_peak_430 chr2L 21676923 21677151 + 12 NA promoter-TSS (FBgn0032957) protein_coding-promoter-TSS (FBgn0032957) 493 FBgn0032957 FBgn0032957 FBtr0085917 CG2225 protein_coding CG8478-S2-modencode_R2_peak_484 chr2R 2108027 2108188 + 12 NA promoter-TSS (FBgn0263144) protein_coding-promoter-TSS (FBgn0263144) -437 FBgn0263144 FBgn0263144 FBtr0085993 bin3 protein_coding CG8478-S2-modencode_R2_peak_3037 chrX 10615498 10615622 + 12 NA intron (FBgn0052676, intron 2 of 3) protein_coding-intron (FBgn0052676, intron 2 of 3) -22975 FBgn0003204 FBgn0003204 FBtr0071496 ras protein_coding CG8478-S2-modencode_R2_peak_2383 chr3R 21847347 21847496 + 12 NA promoter-TSS (FBgn0002609) protein_coding-promoter-TSS (FBgn0002609) -16 FBgn0002609 FBgn0002609 FBtr0084958 HLHm3 protein_coding CG8478-S2-modencode_R2_peak_392 chr2L 19398489 19398621 + 12 NA promoter-TSS (FBgn0032775) protein_coding-promoter-TSS (FBgn0032775) -63 FBgn0032775 FBgn0032775 FBtr0300822 CG17544 protein_coding CG8478-S2-modencode_R2_peak_1095 chr2R 17366937 17367011 + 12 NA intron (FBgn0010415, intron 2 of 6) protein_coding-intron (FBgn0010415, intron 2 of 5) -2460 FBgn0026369 FBgn0026369 FBtr0071642 Sara protein_coding CG8478-S2-modencode_R2_peak_2941 chrX 9367666 9367794 + 12 NA intron (FBgn0261260, intron 1 of 2) protein_coding-intron (FBgn0261260, intron 1 of 14) 22491 FBgn0261260 FBgn0261260 FBtr0302154 mgl protein_coding CG8478-S2-modencode_R2_peak_2305 chr3R 19172018 19172391 + 12 NA promoter-TSS (FBgn0003118) protein_coding-promoter-TSS (FBgn0003118) -320 FBgn0003118 FBgn0003118 FBtr0089715 pnt protein_coding CG8478-S2-modencode_R2_peak_1506 chr3L 11085361 11085530 + 12 NA promoter-TSS (FBgn0020412) protein_coding-promoter-TSS (FBgn0020412) 848 FBgn0020412 FBgn0020412 FBtr0076236 JIL-1 protein_coding CG8478-S2-modencode_R2_peak_1494 chr3L 10831351 10831941 + 12 NA Intergenic Intergenic -19858 FBgn0026160 FBgn0026160 FBtr0076268 tna protein_coding CG8478-S2-modencode_R2_peak_867 chr2R 11822234 11822671 + 12 NA promoter-TSS (FBgn0034050) protein_coding-promoter-TSS (FBgn0034050) 79 FBgn0034050 FBgn0034050 FBtr0087290 CG8297 protein_coding CG8478-S2-modencode_R2_peak_1928 chr3R 5263585 5263845 + 12 NA intron (FBgn0261552, intron 1 of 4) protein_coding-intron (FBgn0261552, intron 1 of 4) 18553 FBgn0037696 FBgn0037696 FBtr0082044 CG9362 protein_coding CG8478-S2-modencode_R2_peak_173 chr2L 7999401 7999561 + 12 NA TTS (FBgn0031972) protein_coding-TTS (FBgn0031972) 547 FBgn0031971 FBgn0031971 FBtr0079532 CG7224 protein_coding CG8478-S2-modencode_R2_peak_373 chr2L 18653962 18654067 + 12 NA intron (FBgn0032694, intron 2 of 2) protein_coding-intron (FBgn0032694, intron 3 of 3) -1015 FBgn0032693 FBgn0032693 FBtr0081077 Cyp310a1 protein_coding CG8478-S2-modencode_R2_peak_2430 chr3R 24165131 24165588 + 12 NA promoter-TSS (FBgn0039581) protein_coding-promoter-TSS (FBgn0039581) 131 FBgn0039580 FBgn0039580 FBtr0085297 Gfat2 protein_coding CG8478-S2-modencode_R2_peak_550 chr2R 3877024 3877153 + 12 NA exon (FBgn0033247, exon 1 of 4) protein_coding-exon (FBgn0033247, exon 1 of 4) 916 FBgn0033247 FBgn0033247 FBtr0088862 Nup44A protein_coding CG8478-S2-modencode_R2_peak_1243 chr3L 1102238 1102333 + 12 NA Intergenic Intergenic -1196 FBgn0004870 FBgn0004870 FBtr0072643 bab1 protein_coding CG8478-S2-modencode_R2_peak_3252 chrX 19000937 19001045 + 12 NA Intergenic Intergenic 17430 FBgn0030983 FBgn0030983 FBtr0074703 CG15882 protein_coding CG8478-S2-modencode_R2_peak_3265 chrX 19056310 19056623 + 12 NA intron (FBgn0261461, intron 2 of 5) protein_coding-intron (FBgn0261461, intron 1 of 4) 6789 FBgn0263571 FBgn0263571 FBtr0309726 mir-4959 pre_miRNA CG8478-S2-modencode_R2_peak_1674 chr3L 18022629 18022874 + 12 NA intron (FBgn0000568, intron 3 of 7) protein_coding-intron (FBgn0000568, intron 1 of 5) -10666 FBgn0052192 FBgn0052192 FBtr0300047 CG32192 protein_coding CG8478-S2-modencode_R2_peak_906 chr2R 12737985 12738091 + 12 NA promoter-TSS (FBgn0025830) protein_coding-promoter-TSS (FBgn0025830) 75 FBgn0025830 FBgn0025830 FBtr0087036 IntS8 protein_coding CG8478-S2-modencode_R2_peak_1512 chr3L 11248921 11249155 + 12 NA TTS (FBgn0041094) protein_coding-TTS (FBgn0041094) 3628 FBgn0041094 FBgn0041094 FBtr0076168 scyl protein_coding CG8478-S2-modencode_R2_peak_79 chr2L 3059528 3059613 + 12 NA intron (FBgn0027571, intron 1 of 5) protein_coding-intron (FBgn0027571, intron 1 of 5) 1108 FBgn0027571 FBgn0027571 FBtr0290093 CG3523 protein_coding CG8478-S2-modencode_R2_peak_2934 chrX 9250035 9250235 + 12 NA promoter-TSS (FBgn0026149) protein_coding-promoter-TSS (FBgn0026149) 125 FBgn0085478 FBgn0085478 FBtr0112755 CG34449 protein_coding CG8478-S2-modencode_R2_peak_2935 chrX 9274462 9274662 + 12 NA intron (FBgn0261260, intron 4 of 14) protein_coding-intron (FBgn0261260, intron 4 of 14) 23895 FBgn0026149 FBgn0026149 FBtr0071358 BCL7-like protein_coding CG8478-S2-modencode_R2_peak_223 chr2L 8951199 8951321 + 12 NA promoter-TSS (FBgn0032078) protein_coding-promoter-TSS (FBgn0032078) 4547 FBgn0032079 FBgn0032079 FBtr0303885 CG31886 protein_coding CG8478-S2-modencode_R2_peak_1023 chr2R 15060264 15060580 + 12 NA exon (FBgn0034420, exon 6 of 14) protein_coding-exon (FBgn0034420, exon 6 of 14) 2777 FBgn0034420 FBgn0034420 FBtr0290318 CG10737 protein_coding CG8478-S2-modencode_R2_peak_1624 chr3L 16996891 16997184 + 12 NA intron (FBgn0036684, intron 1 of 6) protein_coding-intron (FBgn0036684, intron 1 of 6) -1577 FBgn0036684 FBgn0036684 FBtr0332122 CG3764 protein_coding CG8478-S2-modencode_R2_peak_2709 chrX 2483443 2483601 + 12 NA exon (FBgn0001404, exon 1 of 3) protein_coding-exon (FBgn0001404, exon 1 of 3) -2634 FBgn0001404 FBgn0001404 FBtr0070440 egh protein_coding CG8478-S2-modencode_R2_peak_678 chr2R 6960454 6960855 + 12 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -12437 FBgn0262817 FBgn0262817 FBtr0306049 CG43188 protein_coding CG8478-S2-modencode_R2_peak_2843 chrX 6241506 6241625 + 12 NA exon (FBgn0029867, exon 1 of 1) protein_coding-exon (FBgn0029867, exon 1 of 1) 429 FBgn0029867 FBgn0029867 FBtr0070905 CG3847 protein_coding CG8478-S2-modencode_R2_peak_2847 chrX 6431831 6431949 + 12 NA exon (FBgn0000524, exon 4 of 4) protein_coding-exon (FBgn0000524, exon 4 of 4) 3847 FBgn0000524 FBgn0000524 FBtr0070914 dx protein_coding CG8478-S2-modencode_R2_peak_466 chr2R 1910760 1911086 + 12 NA promoter-TSS (FBgn0033051) protein_coding-promoter-TSS (FBgn0033051) -212 FBgn0033051 FBgn0033051 FBtr0086028 dream protein_coding CG8478-S2-modencode_R2_peak_76 chr2L 2767054 2767230 + 12 NA promoter-TSS (FBgn0028398) protein_coding-promoter-TSS (FBgn0028398) -760 FBgn0028398 FBgn0028398 FBtr0077717 Taf10 protein_coding CG8478-S2-modencode_R2_peak_408 chr2L 20447224 20447463 + 12 NA TTS (FBgn0051683) protein_coding-TTS (FBgn0051683) 2621 FBgn0051683 FBgn0051683 FBtr0330662 CG31683 protein_coding CG8478-S2-modencode_R2_peak_1909 chr3R 5065535 5065785 + 12 NA TTS (FBgn0260935) protein_coding-TTS (FBgn0260935) 329 FBgn0000412 FBgn0000412 FBtr0301524 D1 protein_coding CG8478-S2-modencode_R2_peak_1035 chr2R 15277568 15277684 + 12 NA promoter-TSS (FBgn0034442) protein_coding-promoter-TSS (FBgn0034442) -7 FBgn0034442 FBgn0034442 FBtr0086525 CG11257 protein_coding CG8478-S2-modencode_R2_peak_2514 chr3R 26629708 26629833 + 12 NA intron (FBgn0011739, intron 1 of 7) protein_coding-intron (FBgn0011739, intron 1 of 7) 2571 FBgn0011739 FBgn0011739 FBtr0085720 wts protein_coding CG8478-S2-modencode_R2_peak_324 chr2L 14654379 14654508 + 12 NA intron (FBgn0003016, intron 1 of 11) protein_coding-intron (FBgn0003016, intron 1 of 10) 34882 FBgn0003016 FBgn0003016 FBtr0301496 osp protein_coding CG8478-S2-modencode_R2_peak_1632 chr3L 17526040 17526229 + 12 NA promoter-TSS (FBgn0259174) protein_coding-promoter-TSS (FBgn0259174) 2953 FBgn0259174 FBgn0259174 FBtr0299642 Nedd4 protein_coding CG8478-S2-modencode_R2_peak_1150 chr2R 19541589 19541733 + 12 NA exon (FBgn0004795, exon 12 of 12) protein_coding-exon (FBgn0004795, exon 12 of 12) -3433 FBgn0034886 FBgn0034886 FBtr0072078 Pde8 protein_coding CG8478-S2-modencode_R2_peak_1291 chr3L 3303683 3304192 + 12 NA promoter-TSS (FBgn0035431) protein_coding-promoter-TSS (FBgn0035431) -2969 FBgn0035431 FBgn0035431 FBtr0073090 CG14968 protein_coding CG8478-S2-modencode_R2_peak_471 chr2R 2026358 2026600 + 12 NA TTS (FBgn0033063) protein_coding-TTS (FBgn0033063) 1671 FBgn0033063 FBgn0033063 FBtr0332948 CG14589 protein_coding CG8478-S2-modencode_R2_peak_3068 chrX 11686827 11686949 + 12 NA promoter-TSS (FBgn0000259) protein_coding-promoter-TSS (FBgn0000259) -24 FBgn0000259 FBgn0000259 FBtr0299569 CkIIbeta protein_coding CG8478-S2-modencode_R2_peak_2964 chrX 9480530 9480837 + 12 NA exon (FBgn0001186, exon 1 of 1) protein_coding-exon (FBgn0001186, exon 1 of 1) 760 FBgn0001186 FBgn0001186 FBtr0071362 Hex-A protein_coding CG8478-S2-modencode_R2_peak_914 chr2R 12947566 12947674 + 12 NA TTS (FBgn0026721) protein_coding-TTS (FBgn0026721) 2519 FBgn0034186 FBgn0034186 FBtr0087013 CG8950 protein_coding CG8478-S2-modencode_R2_peak_525 chr2R 3495392 3495617 + 12 NA intron (FBgn0033196, intron 2 of 10) protein_coding-intron (FBgn0033196, intron 2 of 10) 12712 FBgn0033196 FBgn0033196 FBtr0088950 CG1358 protein_coding CG8478-S2-modencode_R2_peak_2079 chr3R 11182911 11183002 + 12 NA promoter-TSS (FBgn0038326) protein_coding-promoter-TSS (FBgn0038326) -11 FBgn0038326 FBgn0038326 FBtr0083091 CG5044 protein_coding CG8478-S2-modencode_R2_peak_464 chr2R 1900948 1901311 + 12 NA promoter-TSS (FBgn0033050) protein_coding-promoter-TSS (FBgn0033050) 2061 FBgn0000043 FBgn0000043 FBtr0086029 Act42A protein_coding CG8478-S2-modencode_R2_peak_754 chr2R 7567236 7567359 + 12 NA promoter-TSS (FBgn0044020) protein_coding-promoter-TSS (FBgn0044020) 319 FBgn0040491 FBgn0040491 FBtr0088077 Buffy protein_coding CG8478-S2-modencode_R2_peak_2421 chr3R 22979003 22979230 + 12 NA intron (FBgn0029155, intron 1 of 6) protein_coding-intron (FBgn0029155, intron 1 of 6) 1753 FBgn0029155 FBgn0029155 FBtr0301707 Men-b protein_coding CG8478-S2-modencode_R2_peak_72 chr2L 2203426 2203529 + 12 NA TTS (FBgn0051668) protein_coding-TTS (FBgn0051668) 2689 FBgn0051668 FBgn0051668 FBtr0307523 CG31668 protein_coding CG8478-S2-modencode_R2_peak_1787 chr3LHet 2446495 2446698 + 12 NA NA NA NA NA CG8478-S2-modencode_R2_peak_3045 chrX 10699712 10699920 + 12 NA intron (FBgn0262735, intron 1 of 5) protein_coding-intron (FBgn0262735, intron 2 of 5) 8310 FBgn0262735 FBgn0262735 FBtr0073419 Imp protein_coding CG8478-S2-modencode_R2_peak_370 chr2L 18627050 18627325 + 12 NA intron (FBgn0032694, intron 1 of 2) protein_coding-intron (FBgn0032694, intron 1 of 3) 9930 FBgn0032694 FBgn0032694 FBtr0329972 MESR3 protein_coding CG8478-S2-modencode_R2_peak_2831 chrX 5792689 5792843 + 12 NA Intergenic Intergenic -2128 FBgn0000042 FBgn0000042 FBtr0070823 Act5C protein_coding CG8478-S2-modencode_R2_peak_2556 chr4 90827 91064 + 12 NA promoter-TSS (FBgn0085432) protein_coding-promoter-TSS (FBgn0085432) 658 FBgn0085432 FBgn0085432 FBtr0112657 pan protein_coding CG8478-S2-modencode_R2_peak_2508 chr3R 26599250 26599443 + 12 NA exon (FBgn0004606, exon 2 of 5) protein_coding-exon (FBgn0004606, exon 2 of 5) 7698 FBgn0004606 FBgn0004606 FBtr0085702 zfh1 protein_coding CG8478-S2-modencode_R2_peak_2403 chr3R 22061050 22061581 + 12 NA exon (FBgn0261708, exon 1 of 3) ncRNA-exon (FBgn0261708, exon 1 of 3) 268 FBgn0261708 FBgn0261708 FBtr0303214 CR42745 ncRNA CG8478-S2-modencode_R2_peak_2073 chr3R 11022201 11022307 + 12 NA promoter-TSS (FBgn0038296) protein_coding-promoter-TSS (FBgn0038296) -477 FBgn0038296 FBgn0038296 FBtr0306246 CG6752 protein_coding CG8478-S2-modencode_R2_peak_1986 chr3R 7388623 7388885 + 12 NA promoter-TSS (FBgn0037912) protein_coding-promoter-TSS (FBgn0037912) 257 FBgn0037912 FBgn0037912 FBtr0100462 sea protein_coding CG8478-S2-modencode_R2_peak_1361 chr3L 5269852 5270213 + 12 NA intron (FBgn0052423, intron 1 of 11) protein_coding-intron (FBgn0052423, intron 1 of 10) 42449 FBgn0035598 FBgn0035598 FBtr0077171 CG4669 protein_coding CG8478-S2-modencode_R2_peak_211 chr2L 8697927 8698160 + 12 NA intron (FBgn0004914, intron 2 of 7) protein_coding-intron (FBgn0004914, intron 2 of 7) 1257 FBgn0004914 FBgn0004914 FBtr0079749 Hnf4 protein_coding CG8478-S2-modencode_R2_peak_2770 chrX 3644576 3644656 + 12 NA intron (FBgn0086899, intron 2 of 9) protein_coding-intron (FBgn0086899, intron 2 of 9) -22057 FBgn0086899 FBgn0086899 FBtr0070596 tlk protein_coding CG8478-S2-modencode_R2_peak_3004 chrX 10218638 10218761 + 12 NA intron (FBgn0259170, intron 1 of 6) protein_coding-intron (FBgn0259170, intron 1 of 6) -1798 FBgn0030189 FBgn0030189 FBtr0071441 CG2909 protein_coding CG8478-S2-modencode_R2_peak_857 chr2R 11627528 11627672 + 12 NA intron (FBgn0050089, intron 3 of 6) protein_coding-intron (FBgn0050089, intron 3 of 6) 12697 FBgn0050089 FBgn0050089 FBtr0087285 CG30089 protein_coding CG8478-S2-modencode_R2_peak_1129 chr2R 18314435 18314829 + 12 NA promoter-TSS (FBgn0034730) protein_coding-promoter-TSS (FBgn0034730) -173 FBgn0034729 FBgn0034729 FBtr0071841 CG10344 protein_coding CG8478-S2-modencode_R2_peak_2732 chrX 3266073 3266260 + 12 NA Intergenic Intergenic -1026 FBgn0262656 FBgn0262656 FBtr0070525 dm protein_coding CG8478-S2-modencode_R2_peak_3147 chrX 13787453 13787635 + 12 NA intron (FBgn0263115, intron 3 of 7) protein_coding-intron (FBgn0263115, intron 2 of 4) -36387 FBgn0030532 FBgn0030532 FBtr0073829 CG11071 protein_coding CG8478-S2-modencode_R2_peak_437 chr2L 22250615 22250743 + 12 NA exon (FBgn0032988, exon 2 of 6) protein_coding-exon (FBgn0032988, exon 2 of 6) 801 FBgn0032988 FBgn0032988 FBtr0331294 Tif-IA protein_coding CG8478-S2-modencode_R2_peak_1703 chr3L 18884050 18884254 + 12 NA promoter-TSS (FBgn0036821) protein_coding-promoter-TSS (FBgn0036821) -1331 FBgn0036822 FBgn0036822 FBtr0075065 CG11637 protein_coding CG8478-S2-modencode_R2_peak_3011 chrX 10280601 10280769 + 12 NA intron (FBgn0000711, intron 1 of 4) protein_coding-intron (FBgn0000711, intron 1 of 5) 692 FBgn0000711 FBgn0000711 FBtr0071447 flw protein_coding CG8478-S2-modencode_R2_peak_357 chr2L 17427556 17427675 + 12 NA intron (FBgn0011274, intron 1 of 6) protein_coding-intron (FBgn0011274, intron 2 of 7) 5546 FBgn0011274 FBgn0011274 FBtr0301577 Dif protein_coding CG8478-S2-modencode_R2_peak_1000 chr2R 14559403 14559588 + 12 NA intron (FBgn0023214, intron 1 of 1) protein_coding-intron (FBgn0023214, intron 1 of 1) 1542 FBgn0023214 FBgn0023214 FBtr0086652 edl protein_coding CG8478-S2-modencode_R2_peak_537 chr2R 3623516 3623641 + 12 NA promoter-TSS (FBgn0042135) protein_coding-promoter-TSS (FBgn0042135) -454 FBgn0042135 FBgn0042135 FBtr0330328 CG18812 protein_coding CG8478-S2-modencode_R2_peak_326 chr2L 15060778 15060890 + 12 NA promoter-TSS (FBgn0010422) protein_coding-promoter-TSS (FBgn0010422) -77 FBgn0010422 FBgn0010422 FBtr0080722 TfIIS protein_coding CG8478-S2-modencode_R2_peak_2540 chr3R 27635726 27635871 + 12 NA TTS (FBgn0024891) protein_coding-TTS (FBgn0024891) 109 FBgn0039882 FBgn0039882 FBtr0085852 CG11576 protein_coding CG8478-S2-modencode_R2_peak_1190 chr3L 128269 128449 + 12 NA Intergenic Intergenic -1091 FBgn0020386 FBgn0020386 FBtr0072471 Pdk1 protein_coding CG8478-S2-modencode_R2_peak_1720 chr3L 19838363 19838461 + 12 NA promoter-TSS (FBgn0020389) protein_coding-promoter-TSS (FBgn0020389) -1997 FBgn0020389 FBgn0020389 FBtr0074889 Papss protein_coding CG8478-S2-modencode_R2_peak_1903 chr3R 5053269 5053369 + 12 NA promoter-TSS (FBgn0003165) protein_coding-promoter-TSS (FBgn0003165) 12670 FBgn0000412 FBgn0000412 FBtr0301524 D1 protein_coding CG8478-S2-modencode_R2_peak_1164 chr2R 19877112 19877317 + 12 NA exon (FBgn0034950, exon 2 of 3) protein_coding-exon (FBgn0034950, exon 2 of 3) 974 FBgn0034950 FBgn0034950 FBtr0072160 Pask protein_coding CG8478-S2-modencode_R2_peak_1719 chr3L 19786032 19786139 + 12 NA promoter-TSS (FBgn0261283) protein_coding-promoter-TSS (FBgn0261283) 584 FBgn0261688 FBgn0261688 FBtr0302280 Gyc76C protein_coding CG8478-S2-modencode_R2_peak_90 chr2L 3632251 3632562 + 12 NA promoter-TSS (FBgn0000721) protein_coding-promoter-TSS (FBgn0000721) -269 FBgn0000721 FBgn0000721 FBtr0100363 for protein_coding CG8478-S2-modencode_R2_peak_365 chr2L 18561774 18561885 + 12 NA intron (FBgn0085370, intron 1 of 17) protein_coding-intron (FBgn0085370, intron 1 of 16) 9819 FBgn0085370 FBgn0085370 FBtr0303162 Pde11 protein_coding CG8478-S2-modencode_R2_peak_3023 chrX 10395104 10395309 + 12 NA intron (FBgn0085443, intron 6 of 10) protein_coding-intron (FBgn0085443, intron 1 of 3) -14546 FBgn0052687 FBgn0052687 FBtr0071458 CG32687 protein_coding CG8478-S2-modencode_R2_peak_664 chr2R 6533079 6533318 + 12 NA promoter-TSS (FBgn0033540) protein_coding-promoter-TSS (FBgn0033540) -32 FBgn0033540 FBgn0033540 FBtr0088212 Elp2 protein_coding CG8478-S2-modencode_R2_peak_313 chr2L 13573561 13573761 + 12 NA intron (FBgn0259984, intron 3 of 11) protein_coding-intron (FBgn0259984, intron 3 of 12) 23497 FBgn0259984 FBgn0259984 FBtr0301412 kuz protein_coding CG8478-S2-modencode_R2_peak_447 chr2R 159374 159600 + 12 NA Intergenic Intergenic -29043 FBgn0262117 FBgn0262117 FBtr0111269 IntS3 protein_coding CG8478-S2-modencode_R2_peak_396 chr2L 19493221 19493455 + 12 NA promoter-TSS (FBgn0002044) protein_coding-promoter-TSS (FBgn0002044) -85 FBgn0032793 FBgn0032793 FBtr0081284 CG10189 protein_coding CG8478-S2-modencode_R2_peak_2507 chr3R 26595485 26595631 + 12 NA intron (FBgn0004606, intron 1 of 4) protein_coding-intron (FBgn0004606, intron 1 of 4) 3910 FBgn0004606 FBgn0004606 FBtr0085702 zfh1 protein_coding CG8478-S2-modencode_R2_peak_2698 chrX 2197658 2197810 + 12 NA intron (FBgn0003079, intron 2 of 5) protein_coding-intron (FBgn0003079, intron 2 of 5) 7817 FBgn0003079 FBgn0003079 FBtr0111025 phl protein_coding CG8478-S2-modencode_R2_peak_1227 chr3L 648796 649185 + 12 NA exon (FBgn0035147, exon 1 of 4) protein_coding-exon (FBgn0035147, exon 1 of 4) 216 FBgn0035147 FBgn0035147 FBtr0306917 Gale protein_coding CG8478-S2-modencode_R2_peak_2449 chr3R 25106280 25106411 + 12 NA Intergenic Intergenic 16606 FBgn0039659 FBgn0039659 FBtr0085439 CG14506 protein_coding CG8478-S2-modencode_R2_peak_119 chr2L 5291419 5291617 + 12 NA Intergenic Intergenic 12467 FBgn0031696 FBgn0031696 FBtr0079069 Bub1 protein_coding CG8478-S2-modencode_R2_peak_2685 chrX 2081532 2081660 + 12 NA promoter-TSS (FBgn0024984) protein_coding-promoter-TSS (FBgn0024984) -257 FBgn0024984 FBgn0024984 FBtr0070392 CG3457 protein_coding CG8478-S2-modencode_R2_peak_2526 chr3R 27048838 27049070 + 12 NA intron (FBgn0039831, intron 2 of 5) protein_coding-intron (FBgn0039831, intron 2 of 5) 2528 FBgn0039831 FBgn0039831 FBtr0113312 CG12054 protein_coding CG8478-S2-modencode_R2_peak_1974 chr3R 6218670 6218785 + 12 NA intron (FBgn0259938, intron 1 of 2) protein_coding-intron (FBgn0259938, intron 1 of 3) 4742 FBgn0259938 FBgn0259938 FBtr0305152 cwo protein_coding CG8478-S2-modencode_R2_peak_1195 chr3L 311849 312091 + 12 NA promoter-TSS (FBgn0004373) protein_coding-promoter-TSS (FBgn0004373) -5114 FBgn0085293 FBgn0085293 FBtr0299835 CG34264 protein_coding CG8478-S2-modencode_R2_peak_3189 chrX 15652895 15653003 + 12 NA promoter-TSS (FBgn0030685) protein_coding-promoter-TSS (FBgn0030685) -43 FBgn0030685 FBgn0030685 FBtr0074199 Graf protein_coding CG8478-S2-modencode_R2_peak_486 chr2R 2110194 2110314 + 12 NA intron (FBgn0263144, intron 1 of 6) protein_coding-intron (FBgn0263144, intron 1 of 6) 1710 FBgn0263144 FBgn0263144 FBtr0085993 bin3 protein_coding CG8478-S2-modencode_R2_peak_1779 chr3L 23731202 23731309 + 12 NA exon (FBgn0040056, exon 1 of 6) protein_coding-exon (FBgn0040056, exon 1 of 6) 195 FBgn0040056 FBgn0040056 FBtr0333914 CG17698 protein_coding CG8478-S2-modencode_R2_peak_448 chr2R 208662 208799 + 12 NA Intergenic Intergenic -78286 FBgn0262117 FBgn0262117 FBtr0111269 IntS3 protein_coding CG8478-S2-modencode_R2_peak_1911 chr3R 5167052 5167154 + 12 NA promoter-TSS (FBgn0263749) protein_coding-promoter-TSS (FBgn0263749) -492 FBgn0263749 FBgn0263749 FBtr0310401 CG43674 protein_coding CG8478-S2-modencode_R2_peak_604 chr2R 5845339 5845541 + 12 NA intron (FBgn0011656, intron 1 of 9) protein_coding-intron (FBgn0011656, intron 1 of 9) 910 FBgn0011656 FBgn0011656 FBtr0088446 Mef2 protein_coding CG8478-S2-modencode_R2_peak_1336 chr3L 4219884 4220013 + 12 NA intron (FBgn0263110, intron 22 of 23) protein_coding-intron (FBgn0263110, intron 24 of 25) 2786 FBgn0052252 FBgn0052252 FBtr0307363 CR32252 ncRNA CG8478-S2-modencode_R2_peak_2942 chrX 9373073 9373187 + 12 NA intron (FBgn0261260, intron 1 of 2) protein_coding-intron (FBgn0261260, intron 1 of 14) 17091 FBgn0261260 FBgn0261260 FBtr0302154 mgl protein_coding CG8478-S2-modencode_R2_peak_193 chr2L 8411100 8411182 + 12 NA exon (FBgn0014417, exon 2 of 2) protein_coding-exon (FBgn0014417, exon 2 of 2) 467 FBgn0014417 FBgn0014417 FBtr0079711 CG13397 protein_coding CG8478-S2-modencode_R2_peak_423 chr2L 21108445 21108655 + 12 NA intron (FBgn0040297, intron 1 of 20) protein_coding-intron (FBgn0040297, intron 1 of 19) 591 FBgn0040297 FBgn0040297 FBtr0299911 Nhe2 protein_coding CG8478-S2-modencode_R2_peak_1930 chr3R 5270968 5271080 + 12 NA exon (FBgn0261552, exon 4 of 5) protein_coding-exon (FBgn0261552, exon 4 of 5) 11244 FBgn0037696 FBgn0037696 FBtr0082044 CG9362 protein_coding CG8478-S2-modencode_R2_peak_3099 chrX 12611115 12611275 + 12 NA TTS (FBgn0264678) ncRNA-TTS (FBgn0264678) 1298 FBgn0264678 FBgn0264678 FBtr0333775 CR43963 ncRNA CG8478-S2-modencode_R2_peak_2182 chr3R 14299126 14299374 + 12 NA intron (FBgn0004652, intron 2 of 8) protein_coding-intron (FBgn0004652, intron 2 of 7) -61897 FBgn0038621 FBgn0038621 FBtr0083654 CG10864 protein_coding CG8478-S2-modencode_R2_peak_200 chr2L 8423569 8424269 + 12 NA intron (FBgn0027932, intron 1 of 4) protein_coding-intron (FBgn0027932, intron 1 of 5) 8229 FBgn0027932 FBgn0027932 FBtr0079666 Akap200 protein_coding CG8478-S2-modencode_R2_peak_3 chr2L 122262 122432 + 12 NA promoter-TSS (FBgn0031220) protein_coding-promoter-TSS (FBgn0031220) -1605 FBgn0031220 FBgn0031220 FBtr0330646 CG4822 protein_coding CG8478-S2-modencode_R2_peak_1325 chr3L 3556883 3557141 + 12 NA intron (FBgn0005640, intron 2 of 10) protein_coding-intron (FBgn0005640, intron 2 of 10) -36811 FBgn0053504 FBgn0053504 FBtr0100848 snRNA:U7 snRNA CG8478-S2-modencode_R2_peak_2152 chr3R 13227027 13227171 + 12 NA promoter-TSS (FBgn0038504) protein_coding-promoter-TSS (FBgn0038504) 77 FBgn0038504 FBgn0038504 FBtr0333933 Sur-8 protein_coding CG8478-S2-modencode_R2_peak_981 chr2R 14374329 14374457 + 12 NA intron (FBgn0028496, intron 2 of 18) protein_coding-intron (FBgn0028496, intron 2 of 18) 11103 FBgn0028496 FBgn0028496 FBtr0086720 CG30116 protein_coding CG8478-S2-modencode_R2_peak_302 chr2L 13075006 13075130 + 12 NA Intergenic Intergenic -14953 FBgn0262160 FBgn0262160 FBtr0089956 CG9932 protein_coding CG8478-S2-modencode_R2_peak_2693 chrX 2188746 2189161 + 12 NA promoter-TSS (FBgn0003079) protein_coding-promoter-TSS (FBgn0003079) -964 FBgn0003079 FBgn0003079 FBtr0111025 phl protein_coding CG8478-S2-modencode_R2_peak_2111 chr3R 12036074 12036373 + 12 NA Intergenic Intergenic -5250 FBgn0010438 FBgn0010438 FBtr0083277 mtSSB protein_coding CG8478-S2-modencode_R2_peak_2282 chr3R 19053124 19053295 + 12 NA promoter-TSS (FBgn0262975) protein_coding-promoter-TSS (FBgn0262975) -5526 FBgn0262975 FBgn0262975 FBtr0308227 cnc protein_coding CG8478-S2-modencode_R2_peak_802 chr2R 9818177 9818343 + 12 NA intron (FBgn0013733, intron 2 of 31) protein_coding-intron (FBgn0013733, intron 2 of 30) 12622 FBgn0033885 FBgn0033885 FBtr0087615 DJ-1alpha protein_coding CG8478-S2-modencode_R2_peak_2936 chrX 9355192 9355307 + 12 NA intron (FBgn0261260, intron 2 of 2) protein_coding-intron (FBgn0261260, intron 2 of 14) 34972 FBgn0261260 FBgn0261260 FBtr0302154 mgl protein_coding CG8478-S2-modencode_R2_peak_3057 chrX 11423726 11423879 + 11 NA intron (FBgn0052666, intron 2 of 5) protein_coding-intron (FBgn0052666, intron 2 of 6) -17699 FBgn0262335 FBgn0262335 FBtr0304519 mir-2492 pre_miRNA CG8478-S2-modencode_R2_peak_224 chr2L 8957613 8957800 + 11 NA exon (FBgn0032079, exon 1 of 2) protein_coding-exon (FBgn0032079, exon 1 of 2) -1899 FBgn0032079 FBgn0032079 FBtr0303885 CG31886 protein_coding CG8478-S2-modencode_R2_peak_1379 chr3L 6970332 6970529 + 11 NA exon (FBgn0047205, exon 2 of 3) ncRNA-exon (FBgn0047205, exon 2 of 3) 1008 FBgn0047205 FBgn0047205 FBtr0076899 CR32385 ncRNA CG8478-S2-modencode_R2_peak_129 chr2L 5348105 5348300 + 11 NA intron (FBgn0016920, intron 2 of 16) protein_coding-intron (FBgn0016920, intron 1 of 12) -5853 FBgn0031703 FBgn0031703 FBtr0079077 CG12512 protein_coding CG8478-S2-modencode_R2_peak_1214 chr3L 615822 616010 + 11 NA exon (FBgn0261636, exon 2 of 2) protein_coding-exon (FBgn0261636, exon 2 of 2) 730 FBgn0261636 FBgn0261636 FBtr0303002 CG42719 protein_coding CG8478-S2-modencode_R2_peak_2511 chr3R 26622130 26622238 + 11 NA intron (FBgn0011739, intron 2 of 7) protein_coding-intron (FBgn0011739, intron 2 of 7) -4804 FBgn0262444 FBgn0262444 FBtr0304453 mir-1013 pre_miRNA CG8478-S2-modencode_R2_peak_305 chr2L 13296332 13296434 + 11 NA promoter-TSS (FBgn0051729) protein_coding-promoter-TSS (FBgn0051729) 34 FBgn0051729 FBgn0051729 FBtr0080462 CG31729 protein_coding CG8478-S2-modencode_R2_peak_2996 chrX 10141770 10141853 + 11 NA intron (FBgn0263220, intron 7 of 12) protein_coding-intron (FBgn0263220, intron 7 of 12) -3198 FBgn0263220 FBgn0263220 FBtr0331338 Hk protein_coding CG8478-S2-modencode_R2_peak_1289 chr3L 3250296 3250632 + 11 NA promoter-TSS (FBgn0262368) pre_miRNA-promoter-TSS (FBgn0262368) -574 FBgn0262368 FBgn0262368 FBtr0304175 mir-282 pre_miRNA CG8478-S2-modencode_R2_peak_1436 chr3L 8693018 8693244 + 11 NA Intergenic Intergenic 20194 FBgn0011509 FBgn0011509 FBtr0076598 SrpRbeta protein_coding CG8478-S2-modencode_R2_peak_2359 chr3R 21158198 21158342 + 11 NA exon (FBgn0039329, exon 5 of 6) protein_coding-exon (FBgn0039329, exon 5 of 6) -1346 FBgn0039328 FBgn0039328 FBtr0084849 CHKov2 protein_coding CG8478-S2-modencode_R2_peak_2979 chrX 9584583 9584812 + 11 NA Intergenic Intergenic 2475 FBgn0261522 FBgn0261522 FBtr0302457 CG42657 protein_coding CG8478-S2-modencode_R2_peak_1935 chr3R 5395580 5395766 + 11 NA TTS (FBgn0037712) protein_coding-TTS (FBgn0037712) 263 FBgn0037713 FBgn0037713 FBtr0332807 CG16790 protein_coding CG8478-S2-modencode_R2_peak_1558 chr3L 14170655 14170945 + 11 NA promoter-TSS (FBgn0000411) protein_coding-promoter-TSS (FBgn0000411) 920 FBgn0000411 FBgn0000411 FBtr0333034 D protein_coding CG8478-S2-modencode_R2_peak_23 chr2L 497589 497748 + 11 NA intron (FBgn0003963, intron 2 of 8) protein_coding-intron (FBgn0003963, intron 1 of 7) -17980 FBgn0043364 FBgn0043364 FBtr0310030 cbt protein_coding CG8478-S2-modencode_R2_peak_462 chr2R 1668399 1668472 + 11 NA intron (FBgn0025693, intron 1 of 9) protein_coding-intron (FBgn0025693, intron 1 of 9) 1925 FBgn0025693 FBgn0025693 FBtr0086056 CG11163 protein_coding CG8478-S2-modencode_R2_peak_640 chr2R 6431404 6431606 + 11 NA promoter-TSS (FBgn0005630) protein_coding-promoter-TSS (FBgn0005630) -6730 FBgn0263483 FBgn0263483 FBtr0309782 snoRNA:lola-d snoRNA CG8478-S2-modencode_R2_peak_2960 chrX 9476674 9476832 + 11 NA Intergenic Intergenic -2745 FBgn0052699 FBgn0052699 FBtr0071369 CG32699 protein_coding CG8478-S2-modencode_R2_peak_2319 chr3R 19820436 19820639 + 11 NA promoter-TSS (FBgn0053108) protein_coding-promoter-TSS (FBgn0053108) -855 FBgn0053108 FBgn0053108 FBtr0084504 CG33108 protein_coding CG8478-S2-modencode_R2_peak_691 chr2R 6983227 6983360 + 11 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -9149 FBgn0262818 FBgn0262818 FBtr0306050 CG43189 protein_coding CG8478-S2-modencode_R2_peak_543 chr2R 3665874 3666116 + 11 NA exon (FBgn0050497, exon 2 of 3) protein_coding-exon (FBgn0050497, exon 2 of 3) 6716 FBgn0000337 FBgn0000337 FBtr0088931 cn protein_coding CG8478-S2-modencode_R2_peak_441 chr2R 137977 138090 + 11 NA Intergenic Intergenic -7589 FBgn0262117 FBgn0262117 FBtr0111269 IntS3 protein_coding CG8478-S2-modencode_R2_peak_1677 chr3L 18055273 18055482 + 11 NA promoter-TSS (FBgn0000568) protein_coding-promoter-TSS (FBgn0000568) 2419 FBgn0000568 FBgn0000568 FBtr0075151 Eip75B protein_coding CG8478-S2-modencode_R2_peak_2638 chrX 839939 840045 + 11 NA promoter-TSS (FBgn0040348) protein_coding-promoter-TSS (FBgn0040348) -187 FBgn0040348 FBgn0040348 FBtr0070187 CG3703 protein_coding CG8478-S2-modencode_R2_peak_2605 chrU 5768166 5768394 + 11 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1971 chr3R 6204230 6204374 + 11 NA promoter-TSS (FBgn0020379) protein_coding-promoter-TSS (FBgn0020379) -512 FBgn0020379 FBgn0020379 FBtr0305997 Rfx protein_coding CG8478-S2-modencode_R2_peak_3059 chrX 11516349 11516620 + 11 NA intron (FBgn0004370, intron 2 of 12) protein_coding-intron (FBgn0004370, intron 1 of 12) 436 FBgn0004370 FBgn0004370 FBtr0330392 Ptp10D protein_coding CG8478-S2-modencode_R2_peak_15 chr2L 251786 251865 + 11 NA TTS (FBgn0031238) protein_coding-TTS (FBgn0031238) 541 FBgn0022246 FBgn0022246 FBtr0078143 Rpp30 protein_coding CG8478-S2-modencode_R2_peak_960 chr2R 14221097 14221296 + 11 NA intron (FBgn0010575, intron 1 of 10) protein_coding-intron (FBgn0010575, intron 1 of 11) 21869 FBgn0040737 FBgn0040737 FBtr0086763 Tango8 protein_coding CG8478-S2-modencode_R2_peak_1564 chr3L 14420382 14420692 + 11 NA promoter-TSS (FBgn0087007) protein_coding-promoter-TSS (FBgn0087007) 16811 FBgn0036423 FBgn0036423 FBtr0333040 CG3919 protein_coding CG8478-S2-modencode_R2_peak_1603 chr3L 16401555 16401962 + 11 NA promoter-TSS (FBgn0014163) protein_coding-promoter-TSS (FBgn0014163) -495 FBgn0014163 FBgn0014163 FBtr0100477 fax protein_coding CG8478-S2-modencode_R2_peak_3165 chrX 14917760 14917994 + 11 NA promoter-TSS (FBgn0052594) protein_coding-promoter-TSS (FBgn0052594) -590 FBgn0052594 FBgn0052594 FBtr0310270 be protein_coding CG8478-S2-modencode_R2_peak_631 chr2R 6403435 6403525 + 11 NA exon (FBgn0005630, exon 6 of 7) protein_coding-exon (FBgn0005630, exon 6 of 7) 19103 FBgn0005630 FBgn0005630 FBtr0089362 lola protein_coding CG8478-S2-modencode_R2_peak_515 chr2R 3269313 3269562 + 11 NA promoter-TSS (FBgn0033159) protein_coding-promoter-TSS (FBgn0033159) -63 FBgn0033159 FBgn0033159 FBtr0306787 Dscam protein_coding CG8478-S2-modencode_R2_peak_1381 chr3L 7341726 7341846 + 11 NA promoter-TSS (FBgn0015298) protein_coding-promoter-TSS (FBgn0015298) 373 FBgn0019662 FBgn0019662 FBtr0332729 qm protein_coding CG8478-S2-modencode_R2_peak_671 chr2R 6952899 6953186 + 11 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -20049 FBgn0262817 FBgn0262817 FBtr0306049 CG43188 protein_coding CG8478-S2-modencode_R2_peak_1781 chr3LHet 562357 562438 + 11 NA NA NA NA NA CG8478-S2-modencode_R2_peak_638 chr2R 6420587 6420719 + 11 NA exon (FBgn0005630, exon 3 of 6) protein_coding-exon (FBgn0005630, exon 3 of 6) 1930 FBgn0005630 FBgn0005630 FBtr0089362 lola protein_coding CG8478-S2-modencode_R2_peak_488 chr2R 2129378 2129501 + 11 NA promoter-TSS (FBgn0033075) protein_coding-promoter-TSS (FBgn0033075) -3602 FBgn0033075 FBgn0033075 FBtr0114492 Pld protein_coding CG8478-S2-modencode_R2_peak_3077 chrX 12478003 12478127 + 11 NA promoter-TSS (FBgn0030400) protein_coding-promoter-TSS (FBgn0030400) -839 FBgn0030400 FBgn0030400 FBtr0273245 CG11138 protein_coding CG8478-S2-modencode_R2_peak_1820 chr3R 2199331 2199662 + 11 NA promoter-TSS (FBgn0037440) protein_coding-promoter-TSS (FBgn0037440) -200 FBgn0037440 FBgn0037440 FBtr0110774 CG1041 protein_coding CG8478-S2-modencode_R2_peak_855 chr2R 11623379 11623626 + 11 NA exon (FBgn0050089, exon 3 of 7) protein_coding-exon (FBgn0050089, exon 3 of 7) 8599 FBgn0050089 FBgn0050089 FBtr0087285 CG30089 protein_coding CG8478-S2-modencode_R2_peak_251 chr2L 10341163 10341315 + 11 NA promoter-TSS (FBgn0051715) protein_coding-promoter-TSS (FBgn0051715) -377 FBgn0051715 FBgn0051715 FBtr0310098 CG31715 protein_coding CG8478-S2-modencode_R2_peak_579 chr2R 5017260 5017468 + 11 NA intron (FBgn0027561, intron 2 of 5) protein_coding-intron (FBgn0027561, intron 2 of 9) 1960 FBgn0027561 FBgn0027561 FBtr0306382 CG18659 protein_coding CG8478-S2-modencode_R2_peak_856 chr2R 11626425 11626633 + 11 NA intron (FBgn0050089, intron 3 of 6) protein_coding-intron (FBgn0050089, intron 3 of 6) 11626 FBgn0050089 FBgn0050089 FBtr0087285 CG30089 protein_coding CG8478-S2-modencode_R2_peak_1074 chr2R 16793181 16793395 + 11 NA Intergenic Intergenic -2388 FBgn0015524 FBgn0015524 FBtr0110772 otp protein_coding CG8478-S2-modencode_R2_peak_157 chr2L 7203905 7204057 + 11 NA TTS (FBgn0031897) protein_coding-TTS (FBgn0031897) 283 FBgn0031896 FBgn0031896 FBtr0079417 CG4502 protein_coding CG8478-S2-modencode_R2_peak_1594 chr3L 15981478 15981655 + 11 NA promoter-TSS (FBgn0263600) protein_coding-promoter-TSS (FBgn0263600) 230 FBgn0259824 FBgn0259824 FBtr0330161 Hip14 protein_coding CG8478-S2-modencode_R2_peak_376 chr2L 18732446 18732559 + 11 NA Intergenic Intergenic -1083 FBgn0032707 FBgn0032707 FBtr0301647 CG10348 protein_coding CG8478-S2-modencode_R2_peak_1524 chr3L 11528366 11528537 + 11 NA promoter-TSS (FBgn0259481) protein_coding-promoter-TSS (FBgn0259481) -873 FBgn0259481 FBgn0259481 FBtr0333217 Mob2 protein_coding CG8478-S2-modencode_R2_peak_292 chr2L 12544571 12544812 + 11 NA TTS (FBgn0261709) ncRNA-TTS (FBgn0261709) 1515 FBgn0261709 FBgn0261709 FBtr0303215 CR42746 ncRNA CG8478-S2-modencode_R2_peak_2495 chr3R 26166591 26166875 + 11 NA intron (FBgn0010113, intron 2 of 5) protein_coding-intron (FBgn0010113, intron 2 of 5) -34374 FBgn0085329 FBgn0085329 FBtr0305269 CG34300 protein_coding CG8478-S2-modencode_R2_peak_3185 chrX 15641647 15641717 + 11 NA exon (FBgn0027329, exon 2 of 2) protein_coding-exon (FBgn0027329, exon 2 of 2) 1023 FBgn0027329 FBgn0027329 FBtr0074086 Tcp-1zeta protein_coding CG8478-S2-modencode_R2_peak_1193 chr3L 133140 133272 + 11 NA intron (FBgn0020386, intron 1 of 5) protein_coding-intron (FBgn0020386, intron 1 of 5) 3756 FBgn0020386 FBgn0020386 FBtr0072471 Pdk1 protein_coding CG8478-S2-modencode_R2_peak_997 chr2R 14549156 14549348 + 11 NA promoter-TSS (FBgn0034372) protein_coding-promoter-TSS (FBgn0034372) -975 FBgn0259202 FBgn0259202 FBtr0299689 CG42306 protein_coding CG8478-S2-modencode_R2_peak_253 chr2L 10841047 10841187 + 11 NA promoter-TSS (FBgn0263560) pre_miRNA-promoter-TSS (FBgn0263560) -724 FBgn0263560 FBgn0263560 FBtr0309698 mir-4987 pre_miRNA CG8478-S2-modencode_R2_peak_1067 chr2R 16158748 16159039 + 11 NA TTS (FBgn0034494) protein_coding-TTS (FBgn0034494) 3137 FBgn0034494 FBgn0034494 FBtr0086305 CG10444 protein_coding CG8478-S2-modencode_R2_peak_1065 chr2R 15998068 15998236 + 11 NA promoter-TSS (FBgn0004364) protein_coding-promoter-TSS (FBgn0004364) -864 FBgn0004364 FBgn0004364 FBtr0086309 18w protein_coding CG8478-S2-modencode_R2_peak_1104 chr2R 17523805 17524002 + 11 NA exon (FBgn0034643, exon 2 of 2) protein_coding-exon (FBgn0034643, exon 2 of 2) 1730 FBgn0034643 FBgn0034643 FBtr0330228 CG10321 protein_coding CG8478-S2-modencode_R2_peak_2559 chr4 202258 202423 + 11 NA Intergenic Intergenic -2325 FBgn0039889 FBgn0039889 FBtr0333677 CG2219 protein_coding CG8478-S2-modencode_R2_peak_2806 chrX 4584939 4585177 + 11 NA intron (FBgn0011760, intron 1 of 2) protein_coding-intron (FBgn0011760, intron 1 of 2) 2819 FBgn0011760 FBgn0011760 FBtr0070707 ctp protein_coding CG8478-S2-modencode_R2_peak_655 chr2R 6482491 6482605 + 11 NA intron (FBgn0263102, intron 1 of 6) protein_coding-intron (FBgn0263102, intron 3 of 9) -27160 FBgn0033538 FBgn0033538 FBtr0113063 CG11883 protein_coding CG8478-S2-modencode_R2_peak_322 chr2L 14045776 14045974 + 11 NA intron (FBgn0028875, intron 2 of 13) protein_coding-intron (FBgn0028875, intron 2 of 13) -1707 FBgn0260011 FBgn0260011 FBtr0080592 nimC4 protein_coding CG8478-S2-modencode_R2_peak_2728 chrX 3250396 3250553 + 11 NA Intergenic Intergenic -16718 FBgn0262656 FBgn0262656 FBtr0070525 dm protein_coding CG8478-S2-modencode_R2_peak_2850 chrX 6497180 6497412 + 11 NA intron (FBgn0029881, intron 1 of 9) protein_coding-intron (FBgn0029881, intron 1 of 9) 938 FBgn0029881 FBgn0029881 FBtr0308653 pigs protein_coding CG8478-S2-modencode_R2_peak_2988 chrX 9767944 9768077 + 11 NA promoter-TSS (FBgn0052695) protein_coding-promoter-TSS (FBgn0052695) 12 FBgn0052695 FBgn0052695 FBtr0071398 CG32695 protein_coding CG8478-S2-modencode_R2_peak_1439 chr3L 8756637 8756764 + 11 NA intron (FBgn0261259, intron 4 of 18) protein_coding-intron (FBgn0261259, intron 2 of 16) 7611 FBgn0035924 FBgn0035924 FBtr0076576 CG6576 protein_coding CG8478-S2-modencode_R2_peak_287 chr2L 12524243 12524370 + 11 NA intron (FBgn0259176, intron 5 of 7) protein_coding-intron (FBgn0259176, intron 5 of 7) 16198 FBgn0263458 FBgn0263458 FBtr0309757 snoRNA:CG43051-a snoRNA CG8478-S2-modencode_R2_peak_936 chr2R 13573508 13573644 + 11 NA promoter-TSS (FBgn0034261) protein_coding-promoter-TSS (FBgn0034261) 228 FBgn0260764 FBgn0260764 FBtr0301266 CG42562 protein_coding CG8478-S2-modencode_R2_peak_2028 chr3R 8839320 8839544 + 11 NA intron (FBgn0020496, intron 1 of 5) protein_coding-intron (FBgn0020496, intron 1 of 5) 2044 FBgn0020496 FBgn0020496 FBtr0082702 CtBP protein_coding CG8478-S2-modencode_R2_peak_3187 chrX 15646731 15646903 + 11 NA exon (FBgn0030685, exon 11 of 13) protein_coding-exon (FBgn0030685, exon 11 of 13) -3584 FBgn0030684 FBgn0030684 FBtr0074088 CG8260 protein_coding CG8478-S2-modencode_R2_peak_178 chr2L 8086576 8086845 + 11 NA intron (FBgn0261822, intron 1 of 6) protein_coding-intron (FBgn0261822, intron 1 of 6) -1594 FBgn0261822 FBgn0261822 FBtr0079573 Bsg protein_coding CG8478-S2-modencode_R2_peak_2900 chrX 7941002 7941109 + 11 NA intron (FBgn0004656, intron 6 of 10) protein_coding-intron (FBgn0004656, intron 6 of 10) -9505 FBgn0029990 FBgn0029990 FBtr0333311 CG2233 protein_coding CG8478-S2-modencode_R2_peak_3160 chrX 14913931 14914027 + 11 NA intron (FBgn0030600, intron 13 of 22) protein_coding-intron (FBgn0030600, intron 13 of 22) -4488 FBgn0052594 FBgn0052594 FBtr0310270 be protein_coding CG8478-S2-modencode_R2_peak_263 chr2L 11804839 11804943 + 11 NA intron (FBgn0020309, intron 1 of 6) protein_coding-intron (FBgn0020309, intron 2 of 7) 4081 FBgn0020309 FBgn0020309 FBtr0305262 crol protein_coding CG8478-S2-modencode_R2_peak_909 chr2R 12894316 12894436 + 11 NA exon (FBgn0034179, exon 2 of 2) protein_coding-exon (FBgn0034179, exon 2 of 2) 1418 FBgn0034179 FBgn0034179 FBtr0306574 CG6805 protein_coding CG8478-S2-modencode_R2_peak_609 chr2R 5963990 5964229 + 11 NA promoter-TSS (FBgn0033482) protein_coding-promoter-TSS (FBgn0033482) -962 FBgn0033482 FBgn0033482 FBtr0088428 CG1371 protein_coding CG8478-S2-modencode_R2_peak_589 chr2R 5461190 5461395 + 11 NA exon (FBgn0085436, exon 5 of 10) protein_coding-exon (FBgn0085436, exon 5 of 10) 5220 FBgn0085436 FBgn0085436 FBtr0302122 Not1 protein_coding CG8478-S2-modencode_R2_peak_959 chr2R 14197096 14197193 + 11 NA intron (FBgn0010575, intron 1 of 10) protein_coding-intron (FBgn0010575, intron 1 of 11) -2183 FBgn0040737 FBgn0040737 FBtr0086763 Tango8 protein_coding CG8478-S2-modencode_R2_peak_1783 chr3LHet 697433 697526 + 11 NA NA NA NA NA CG8478-S2-modencode_R2_peak_1318 chr3L 3455043 3455297 + 11 NA intron (FBgn0026259, intron 4 of 8) protein_coding-intron (FBgn0026259, intron 4 of 8) 5807 FBgn0026259 FBgn0026259 FBtr0073144 eIF5B protein_coding CG8478-S2-modencode_R2_peak_171 chr2L 7993806 7994054 + 11 NA TTS (FBgn0031970) protein_coding-TTS (FBgn0031970) -2350 FBgn0031969 FBgn0031969 FBtr0331673 pes protein_coding CG8478-S2-modencode_R2_peak_3250 chrX 18671620 18671756 + 11 NA intron (FBgn0030955, intron 1 of 2) protein_coding-intron (FBgn0030955, intron 1 of 2) -2047 FBgn0030955 FBgn0030955 FBtr0074632 CG6891 protein_coding CG8478-S2-modencode_R2_peak_2952 chrX 9397680 9397964 + 11 NA exon (FBgn0263508, exon 2 of 2) ncRNA-exon (FBgn0263508, exon 2 of 2) 2711 FBgn0263508 FBgn0263508 FBtr0309529 CR43497 ncRNA CG8478-S2-modencode_R2_peak_2677 chrX 1982000 1982123 + 11 NA intron (FBgn0040395, intron 1 of 4) protein_coding-intron (FBgn0040395, intron 1 of 4) -1308 FBgn0040395 FBgn0040395 FBtr0333755 Unc-76 protein_coding CG8478-S2-modencode_R2_peak_2379 chr3R 21835431 21835584 + 11 NA Intergenic Intergenic -1108 FBgn0002732 FBgn0002732 FBtr0084956 malpha protein_coding CG8478-S2-modencode_R2_peak_1727 chr3L 20183931 20184049 + 11 NA exon (FBgn0261556, exon 2 of 15) protein_coding-exon (FBgn0261556, exon 2 of 15) 2368 FBgn0036945 FBgn0036945 FBtr0074821 CG6981 protein_coding CG8478-S2-modencode_R2_peak_3076 chrX 12468940 12469171 + 11 NA intron (FBgn0030400, intron 1 of 3) protein_coding-intron (FBgn0030400, intron 1 of 3) 8171 FBgn0030400 FBgn0030400 FBtr0273245 CG11138 protein_coding CG8478-S2-modencode_R2_peak_1320 chr3L 3456662 3456929 + 11 NA intron (FBgn0026259, intron 4 of 8) protein_coding-intron (FBgn0026259, intron 4 of 8) 4182 FBgn0026259 FBgn0026259 FBtr0073144 eIF5B protein_coding CG8478-S2-modencode_R2_peak_2697 chrX 2196286 2196651 + 11 NA intron (FBgn0003079, intron 2 of 5) protein_coding-intron (FBgn0003079, intron 2 of 5) 6551 FBgn0003079 FBgn0003079 FBtr0111025 phl protein_coding CG8478-S2-modencode_R2_peak_2078 chr3R 11166284 11166393 + 11 NA promoter-TSS (FBgn0021750) protein_coding-promoter-TSS (FBgn0021750) -69 FBgn0021750 FBgn0021750 FBtr0083086 Aats-ser protein_coding CG8478-S2-modencode_R2_peak_2303 chr3R 19167499 19167762 + 11 NA intron (FBgn0003118, intron 1 of 8) protein_coding-intron (FBgn0003118, intron 1 of 8) 4254 FBgn0003118 FBgn0003118 FBtr0089715 pnt protein_coding CG8478-S2-modencode_R2_peak_1335 chr3L 4219046 4219213 + 11 NA exon (FBgn0263110, exon 24 of 26) protein_coding-exon (FBgn0263110, exon 24 of 26) 3605 FBgn0052252 FBgn0052252 FBtr0307363 CR32252 ncRNA CG8478-S2-modencode_R2_peak_2873 chrX 7214871 7215031 + 11 NA intron (FBgn0029943, intron 5 of 5) protein_coding-intron (FBgn0029943, intron 5 of 5) 2847 FBgn0029943 FBgn0029943 FBtr0071065 Atg5 protein_coding CG8478-S2-modencode_R2_peak_2016 chr3R 8540835 8541054 + 11 NA intron (FBgn0002719, intron 1 of 2) protein_coding-intron (FBgn0002719, intron 2 of 3) -2923 FBgn0002905 FBgn0002905 FBtr0082662 mus308 protein_coding CG8478-S2-modencode_R2_peak_142 chr2L 6455711 6455816 + 11 NA promoter-TSS (FBgn0031815) protein_coding-promoter-TSS (FBgn0031815) 171 FBgn0031814 FBgn0031814 FBtr0329951 retm protein_coding CG8478-S2-modencode_R2_peak_1133 chr2R 18437598 18437751 + 11 NA promoter-TSS (FBgn0034736) protein_coding-promoter-TSS (FBgn0034736) 75 FBgn0034736 FBgn0034736 FBtr0071835 CG6018 protein_coding CG8478-S2-modencode_R2_peak_2666 chrX 1774515 1774623 + 11 NA promoter-TSS (FBgn0026088) protein_coding-promoter-TSS (FBgn0026088) 5 FBgn0029594 FBgn0029594 FBtr0331384 CG14806 protein_coding CG8478-S2-modencode_R2_peak_1284 chr3L 3198772 3198863 + 11 NA promoter-TSS (FBgn0035416) protein_coding-promoter-TSS (FBgn0035416) 230 FBgn0047135 FBgn0047135 FBtr0073107 CG32276 protein_coding CG8478-S2-modencode_R2_peak_402 chr2L 20068270 20068403 + 11 NA intron (FBgn0045064, intron 1 of 4) protein_coding-intron (FBgn0045064, intron 1 of 3) 1966 FBgn0045064 FBgn0045064 FBtr0331184 bwa protein_coding CG8478-S2-modencode_R2_peak_346 chr2L 16587957 16588070 + 11 NA intron (FBgn0259735, intron 2 of 4) protein_coding-intron (FBgn0259735, intron 2 of 2) -17932 FBgn0051815 FBgn0051815 FBtr0080870 CG31815 protein_coding CG8478-S2-modencode_R2_peak_952 chr2R 14175116 14175272 + 11 NA exon (FBgn0010575, exon 3 of 3) protein_coding-exon (FBgn0010575, exon 3 of 3) -1399 FBgn0034321 FBgn0034321 FBtr0086757 CG14502 protein_coding CG8478-S2-modencode_R2_peak_1384 chr3L 7374664 7374849 + 11 NA promoter-TSS (FBgn0016983) protein_coding-promoter-TSS (FBgn0016983) 42 FBgn0016983 FBgn0016983 FBtr0331850 smid protein_coding CG8478-S2-modencode_R2_peak_1543 chr3L 12783446 12783643 + 11 NA promoter-TSS (FBgn0261674) protein_coding-promoter-TSS (FBgn0261674) 252 FBgn0261674 FBgn0261674 FBtr0302981 CG42709 protein_coding CG8478-S2-modencode_R2_peak_685 chr2R 6975394 6975466 + 11 NA exon (FBgn0262817, exon 2 of 2) protein_coding-exon (FBgn0262817, exon 2 of 2) -1286 FBgn0262818 FBgn0262818 FBtr0306050 CG43189 protein_coding CG8478-S2-modencode_R2_peak_374 chr2L 18693167 18693329 + 11 NA exon (FBgn0032699, exon 2 of 4) protein_coding-exon (FBgn0032699, exon 2 of 4) 2174 FBgn0032699 FBgn0032699 FBtr0089628 CG10383 protein_coding CG8478-S2-modencode_R2_peak_2375 chr3R 21822042 21822183 + 11 NA TTS (FBgn0015269) protein_coding-TTS (FBgn0015269) 606 FBgn0262576 FBgn0262576 FBtr0305046 CG43116 protein_coding CG8478-S2-modencode_R2_peak_1106 chr2R 17552037 17552227 + 11 NA exon (FBgn0259708, exon 1 of 2) protein_coding-exon (FBgn0259708, exon 1 of 2) 194 FBgn0259709 FBgn0259709 FBtr0299962 CG42363 protein_coding CG8478-S2-modencode_R2_peak_632 chr2R 6410664 6410803 + 11 NA TTS (FBgn0005630) protein_coding-TTS (FBgn0005630) 11850 FBgn0005630 FBgn0005630 FBtr0089362 lola protein_coding CG8478-S2-modencode_R2_peak_268 chr2L 12403572 12403697 + 11 NA exon (FBgn0043841, exon 6 of 6) protein_coding-exon (FBgn0043841, exon 6 of 6) 5360 FBgn0041195 FBgn0041195 FBtr0080365 Pkd2 protein_coding CG8478-S2-modencode_R2_peak_673 chr2R 6955128 6955349 + 11 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -17853 FBgn0262817 FBgn0262817 FBtr0306049 CG43188 protein_coding CG8478-S2-modencode_R2_peak_954 chr2R 14176349 14176508 + 11 NA promoter-TSS (FBgn0034321) protein_coding-promoter-TSS (FBgn0034321) -165 FBgn0034321 FBgn0034321 FBtr0086757 CG14502 protein_coding CG8478-S2-modencode_R2_peak_1377 chr3L 6957789 6957911 + 11 NA promoter-TSS (FBgn0261445) protein_coding-promoter-TSS (FBgn0261445) 8 FBgn0261445 FBgn0261445 FBtr0076938 sgl protein_coding CG8478-S2-modencode_R2_peak_933 chr2R 13435663 13435972 + 11 NA promoter-TSS (FBgn0034240) protein_coding-promoter-TSS (FBgn0034240) 488 FBgn0034240 FBgn0034240 FBtr0086946 MESR4 protein_coding CG8478-S2-modencode_R2_peak_30 chr2L 518383 518566 + 11 NA intron (FBgn0003963, intron 2 of 8) protein_coding-intron (FBgn0003963, intron 1 of 7) 24106 FBgn0010602 FBgn0010602 FBtr0310029 lwr protein_coding CG8478-S2-modencode_R2_peak_2748 chrX 3384824 3384944 + 11 NA TTS (FBgn0029667) protein_coding-TTS (FBgn0029667) 5201 FBgn0029666 FBgn0029666 FBtr0331611 CG10803 protein_coding CG8478-S2-modencode_R2_peak_2024 chr3R 8786048 8786331 + 11 NA intron (FBgn0040493, intron 1 of 5) protein_coding-intron (FBgn0040493, intron 1 of 5) -1285 FBgn0087021 FBgn0087021 FBtr0082690 Spc25 protein_coding CG8478-S2-modencode_R2_peak_2250 chr3R 17406529 17406705 + 11 NA intron (FBgn0013984, intron 2 of 11) protein_coding-intron (FBgn0013984, intron 3 of 12) 9296 FBgn0013984 FBgn0013984 FBtr0290232 InR protein_coding CG8478-S2-modencode_R2_peak_3269 chrX 19199391 19199584 + 11 NA intron (FBgn0031012, intron 1 of 4) protein_coding-intron (FBgn0031012, intron 1 of 4) 2470 FBgn0031012 FBgn0031012 FBtr0074683 CG8051 protein_coding CG8478-S2-modencode_R2_peak_1130 chr2R 18424105 18424266 + 11 NA exon (FBgn0003175, exon 8 of 14) protein_coding-exon (FBgn0003175, exon 8 of 14) -13414 FBgn0034736 FBgn0034736 FBtr0071835 CG6018 protein_coding CG8478-S2-modencode_R2_peak_2014 chr3R 8526904 8527067 + 11 NA intron (FBgn0016693, intron 1 of 2) protein_coding-intron (FBgn0016693, intron 2 of 3) 3432 FBgn0016693 FBgn0016693 FBtr0082655 Past1 protein_coding CG8478-S2-modencode_R2_peak_847 chr2R 11178404 11178506 + 11 NA exon (FBgn0083959, exon 1 of 25) protein_coding-exon (FBgn0083959, exon 1 of 25) 1931 FBgn0083959 FBgn0083959 FBtr0110831 trpm protein_coding CG8478-S2-modencode_R2_peak_3239 chrX 18214079 18214197 + 11 NA intron (FBgn0030912, intron 1 of 3) protein_coding-intron (FBgn0030912, intron 1 of 3) -3956 FBgn0030912 FBgn0030912 FBtr0074580 CG6023 protein_coding CG8478-S2-modencode_R2_peak_2253 chr3R 17459675 17459801 + 11 NA promoter-TSS (FBgn0011766) protein_coding-promoter-TSS (FBgn0011766) -994 FBgn0011766 FBgn0011766 FBtr0084119 E2f protein_coding CG8478-S2-modencode_R2_peak_2271 chr3R 18247803 18247923 + 11 NA intron (FBgn0038965, intron 2 of 2) protein_coding-intron (FBgn0038965, intron 2 of 2) 986 FBgn0038965 FBgn0038965 FBtr0084229 mats protein_coding CG8478-S2-modencode_R2_peak_990 chr2R 14502771 14502960 + 11 NA promoter-TSS (FBgn0034363) protein_coding-promoter-TSS (FBgn0034363) 278 FBgn0034362 FBgn0034362 FBtr0086706 CG5323 protein_coding CG8478-S2-modencode_R2_peak_1296 chr3L 3389951 3390108 + 11 NA Intergenic Intergenic 11761 FBgn0035445 FBgn0035445 FBtr0073077 CG12014 protein_coding CG8478-S2-modencode_R2_peak_1868 chr3R 3946255 3946624 + 11 NA exon (FBgn0243512, exon 4 of 4) protein_coding-exon (FBgn0243512, exon 4 of 4) -1982 FBgn0037549 FBgn0037549 FBtr0113205 CG7878 protein_coding CG8478-S2-modencode_R2_peak_519 chr2R 3380152 3380251 + 11 NA promoter-TSS (FBgn0263240) protein_coding-promoter-TSS (FBgn0263240) 332 FBgn0263967 FBgn0263967 FBtr0329875 CR43723 ncRNA CG8478-S2-modencode_R2_peak_672 chr2R 6954087 6954173 + 11 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -18961 FBgn0262817 FBgn0262817 FBtr0306049 CG43188 protein_coding CG8478-S2-modencode_R2_peak_1084 chr2R 17087397 17087571 + 11 NA promoter-TSS (FBgn0034603) protein_coding-promoter-TSS (FBgn0034603) -504 FBgn0034603 FBgn0034603 FBtr0308066 Glycogenin protein_coding CG8478-S2-modencode_R2_peak_3183 chrX 15629848 15629956 + 11 NA TTS (FBgn0026666) protein_coding-TTS (FBgn0026666) 1251 FBgn0011741 FBgn0011741 FBtr0074203 Actr13E protein_coding CG8478-S2-modencode_R2_peak_2913 chrX 8468825 8469148 + 11 NA intron (FBgn0030052, intron 1 of 6) protein_coding-intron (FBgn0030052, intron 1 of 9) 649 FBgn0030052 FBgn0030052 FBtr0300751 CG12065 protein_coding CG8478-S2-modencode_R2_peak_764 chr2R 8625881 8626064 + 11 NA exon (FBgn0261545, exon 4 of 9) protein_coding-exon (FBgn0261545, exon 4 of 9) 14469 FBgn0033773 FBgn0033773 FBtr0087865 mos protein_coding CG8478-S2-modencode_R2_peak_2260 chr3R 17676943 17677061 + 11 NA exon (FBgn0015229, exon 2 of 2) protein_coding-exon (FBgn0015229, exon 2 of 2) -4621 FBgn0045468 FBgn0045468 FBtr0084158 Gr93d protein_coding CG8478-S2-modencode_R2_peak_2566 chr4 865245 865388 + 11 NA promoter-TSS (FBgn0039937) protein_coding-promoter-TSS (FBgn0039937) -184 FBgn0039937 FBgn0039937 FBtr0089251 fd102C protein_coding CG8478-S2-modencode_R2_peak_1878 chr3R 4573826 4574380 + 11 NA promoter-TSS (FBgn0037623) protein_coding-promoter-TSS (FBgn0037623) 575 FBgn0037624 FBgn0037624 FBtr0081915 CG8223 protein_coding CG8478-S2-modencode_R2_peak_434 chr2L 22120951 22121066 + 11 NA promoter-TSS (FBgn0032974) protein_coding-promoter-TSS (FBgn0032974) -832 FBgn0032974 FBgn0032974 FBtr0331656 CG3651 protein_coding CG8478-S2-modencode_R2_peak_3180 chrX 15626799 15626928 + 11 NA TTS (FBgn0030676) protein_coding-TTS (FBgn0030676) 652 FBgn0030675 FBgn0030675 FBtr0074083 CG8191 protein_coding CG8478-S2-modencode_R2_peak_629 chr2R 6363968 6364174 + 11 NA intron (FBgn0261862, intron 1 of 8) protein_coding-intron (FBgn0261862, intron 1 of 8) -1088 FBgn0261862 FBgn0261862 FBtr0301282 whd protein_coding CG8478-S2-modencode_R2_peak_2609 chrU 6292758 6293030 + 11 NA NA NA NA NA CG8478-S2-modencode_R2_peak_3096 chrX 12575566 12575661 + 11 NA exon (FBgn0011837, exon 4 of 4) protein_coding-exon (FBgn0011837, exon 4 of 4) 22118 FBgn0053963 FBgn0053963 FBtr0100004 CR33963 ncRNA CG8478-S2-modencode_R2_peak_3078 chrX 12485761 12485992 + 11 NA TTS (FBgn0030403) protein_coding-TTS (FBgn0030403) -2495 FBgn0041203 FBgn0041203 FBtr0301830 LIMK1 protein_coding CG8478-S2-modencode_R2_peak_395 chr2L 19426091 19426256 + 11 NA promoter-TSS (FBgn0032780) protein_coding-promoter-TSS (FBgn0032780) -149 FBgn0032780 FBgn0032780 FBtr0081203 CG13085 protein_coding CG8478-S2-modencode_R2_peak_683 chr2R 6972162 6972276 + 11 NA promoter-TSS (FBgn0262817) protein_coding-promoter-TSS (FBgn0262817) -872 FBgn0262817 FBgn0262817 FBtr0306049 CG43188 protein_coding CG8478-S2-modencode_R2_peak_372 chr2L 18646056 18646174 + 11 NA intron (FBgn0032694, intron 2 of 3) protein_coding-intron (FBgn0032694, intron 2 of 3) 6884 FBgn0032693 FBgn0032693 FBtr0081077 Cyp310a1 protein_coding CG8478-S2-modencode_R2_peak_2448 chr3R 25103139 25103458 + 11 NA Intergenic Intergenic 19653 FBgn0039659 FBgn0039659 FBtr0085439 CG14506 protein_coding CG8478-S2-modencode_R2_peak_1020 chr2R 15042320 15042568 + 11 NA promoter-TSS (FBgn0000578) protein_coding-promoter-TSS (FBgn0000578) -257 FBgn0000578 FBgn0000578 FBtr0114623 ena protein_coding CG8478-S2-modencode_R2_peak_2081 chr3R 11263880 11263977 + 11 NA Intergenic Intergenic -1782 FBgn0000047 FBgn0000047 FBtr0083143 Act88F protein_coding CG8478-S2-modencode_R2_peak_1302 chr3L 3407214 3407444 + 11 NA intron (FBgn0014388, intron 1 of 1) protein_coding-intron (FBgn0014388, intron 1 of 1) 4858 FBgn0262260 FBgn0262260 FBtr0304360 mir-2282 pre_miRNA CG8478-S2-modencode_R2_peak_513 chr2R 3260102 3260227 + 11 NA intron (FBgn0033159, intron 2 of 23) protein_coding-intron (FBgn0033159, intron 2 of 23) 9210 FBgn0033159 FBgn0033159 FBtr0306787 Dscam protein_coding CG8478-S2-modencode_R2_peak_453 chr2R 1564056 1564161 + 11 NA TTS (FBgn0033033) protein_coding-TTS (FBgn0033033) 4831 FBgn0033032 FBgn0033032 FBtr0086037 kune protein_coding CG8478-S2-modencode_R2_peak_3133 chrX 13198124 13198247 + 11 NA promoter-TSS (FBgn0030469) protein_coding-promoter-TSS (FBgn0030469) -1367 FBgn0030469 FBgn0030469 FBtr0073759 CG15745 protein_coding CG8478-S2-modencode_R2_peak_503 chr2R 2757468 2757752 + 11 NA intron (FBgn0033109, intron 1 of 6) protein_coding-intron (FBgn0033109, intron 1 of 6) 2664 FBgn0033109 FBgn0033109 FBtr0086208 coro protein_coding CG8478-S2-modencode_R2_peak_1891 chr3R 4756797 4756904 + 11 NA exon (FBgn0262614, exon 1 of 14) protein_coding-exon (FBgn0262614, exon 1 of 14) -4003 FBgn0003015 FBgn0003015 FBtr0081956 osk protein_coding CG8478-S2-modencode_R2_peak_1750 chr3L 21297502 21297697 + 11 NA promoter-TSS (FBgn0037071) protein_coding-promoter-TSS (FBgn0037071) -198 FBgn0037071 FBgn0037071 FBtr0321281 CG7632 protein_coding CG8478-S2-modencode_R2_peak_1724 chr3L 20000061 20000197 + 11 NA intron (FBgn0261574, intron 1 of 21) protein_coding-intron (FBgn0261574, intron 1 of 20) 445 FBgn0261574 FBgn0261574 FBtr0332722 kug protein_coding CG8478-S2-modencode_R2_peak_461 chr2R 1649249 1649463 + 11 NA exon (FBgn0033039, exon 2 of 19) protein_coding-exon (FBgn0033039, exon 2 of 19) 983 FBgn0033039 FBgn0033039 FBtr0086044 gp210 protein_coding CG8478-S2-modencode_R2_peak_3088 chrX 12555055 12555181 + 11 NA TTS (FBgn0053963) ncRNA-TTS (FBgn0053963) 1623 FBgn0053963 FBgn0053963 FBtr0100004 CR33963 ncRNA CG8478-S2-modencode_R2_peak_1034 chr2R 15276145 15276302 + 11 NA exon (FBgn0034441, exon 10 of 11) protein_coding-exon (FBgn0034441, exon 10 of 11) -1410 FBgn0034442 FBgn0034442 FBtr0086525 CG11257 protein_coding CG8478-S2-modencode_R2_peak_1078 chr2R 16954279 16954394 + 11 NA exon (FBgn0022700, exon 2 of 5) protein_coding-exon (FBgn0022700, exon 2 of 5) 256 FBgn0022700 FBgn0022700 FBtr0071543 Cht4 protein_coding CG8478-S2-modencode_R2_peak_1463 chr3L 9707585 9707730 + 11 NA promoter-TSS (FBgn0040475) protein_coding-promoter-TSS (FBgn0040475) 233 FBgn0045823 FBgn0045823 FBtr0330097 vsg protein_coding CG8478-S2-modencode_R2_peak_3065 chrX 11581630 11581985 + 11 NA intron (FBgn0014133, intron 4 of 6) protein_coding-intron (FBgn0014133, intron 4 of 5) -7338 FBgn0011754 FBgn0011754 FBtr0301500 PhKgamma protein_coding CG8478-S2-modencode_R2_peak_1975 chr3R 6221076 6221223 + 11 NA intron (FBgn0259938, intron 1 of 2) protein_coding-intron (FBgn0259938, intron 1 of 3) -5605 FBgn0045443 FBgn0045443 FBtr0332553 mthl11 protein_coding CG8478-S2-modencode_R2_peak_237 chr2L 9488382 9488571 + 11 NA Intergenic Intergenic 6320 FBgn0004868 FBgn0004868 FBtr0079862 Gdi protein_coding CG8478-S2-modencode_R2_peak_3002 chrX 10216157 10216292 + 11 NA intron (FBgn0259170, intron 2 of 6) protein_coding-intron (FBgn0259170, intron 2 of 6) -4273 FBgn0030189 FBgn0030189 FBtr0071441 CG2909 protein_coding CG8478-S2-modencode_R2_peak_1630 chr3L 17506432 17506581 + 11 NA promoter-TSS (FBgn0036734) protein_coding-promoter-TSS (FBgn0036734) 506 FBgn0036733 FBgn0036733 FBtr0075209 U4-U6-60K protein_coding CG8478-S2-modencode_R2_peak_1312 chr3L 3435399 3435544 + 11 NA intron (FBgn0026259, intron 7 of 8) protein_coding-intron (FBgn0026259, intron 7 of 8) -17544 FBgn0014388 FBgn0014388 FBtr0073146 sty protein_coding CG8478-S2-modencode_R2_peak_733 chr2R 7487875 7487969 + 11 NA intron (FBgn0033636, intron 1 of 15) protein_coding-intron (FBgn0033636, intron 1 of 16) 4519 FBgn0033636 FBgn0033636 FBtr0088094 tou protein_coding CG8478-S2-modencode_R2_peak_1229 chr3L 651885 652022 + 11 NA TTS (FBgn0035147) protein_coding-TTS (FBgn0035147) 928 FBgn0035148 FBgn0035148 FBtr0072559 CG3402 protein_coding CG8478-S2-modencode_R2_peak_1764 chr3L 22767597 22767739 + 11 NA intron (FBgn0052451, intron 1 of 4) protein_coding-intron (FBgn0052451, intron 1 of 3) -13871 FBgn0037191 FBgn0037191 FBtr0078534 CG14448 protein_coding CG8478-S2-modencode_R2_peak_1297 chr3L 3398610 3398778 + 11 NA Intergenic Intergenic 13493 FBgn0262260 FBgn0262260 FBtr0304360 mir-2282 pre_miRNA CG8478-S2-modencode_R2_peak_3163 chrX 14916271 14916374 + 11 NA intron (FBgn0030600, intron 13 of 22) protein_coding-intron (FBgn0030600, intron 13 of 22) -2145 FBgn0052594 FBgn0052594 FBtr0310270 be protein_coding CG8478-S2-modencode_R2_peak_1402 chr3L 7856695 7856920 + 11 NA intron (FBgn0016694, intron 1 of 5) protein_coding-intron (FBgn0016694, intron 1 of 4) 3662 FBgn0016694 FBgn0016694 FBtr0332080 Pdp1 protein_coding CG8478-S2-modencode_R2_peak_174 chr2L 8002014 8002142 + 11 NA intron (FBgn0031972, intron 3 of 5) protein_coding-intron (FBgn0031972, intron 3 of 5) 2235 FBgn0031972 FBgn0031972 FBtr0079550 Wwox protein_coding CG8478-S2-modencode_R2_peak_1021 chr2R 15046214 15046333 + 11 NA exon (FBgn0000578, exon 3 of 10) protein_coding-exon (FBgn0000578, exon 3 of 10) 3572 FBgn0000578 FBgn0000578 FBtr0114623 ena protein_coding CG8478-S2-modencode_R2_peak_1622 chr3L 16970433 16970607 + 11 NA intron (FBgn0261547, intron 1 of 8) protein_coding-intron (FBgn0261547, intron 1 of 8) 7407 FBgn0261547 FBgn0261547 FBtr0302649 Exn protein_coding CG8478-S2-modencode_R2_peak_2132 chr3R 12269374 12269607 + 11 NA promoter-TSS (FBgn0038428) protein_coding-promoter-TSS (FBgn0038428) 524 FBgn0038429 FBgn0038429 FBtr0083289 CG14882 protein_coding CG8478-S2-modencode_R2_peak_962 chr2R 14227667 14227737 + 11 NA intron (FBgn0010575, intron 1 of 10) protein_coding-intron (FBgn0010575, intron 1 of 11) 17099 FBgn0010575 FBgn0010575 FBtr0329996 sbb protein_coding CG8478-S2-modencode_R2_peak_899 chr2R 12678766 12678877 + 11 NA exon (FBgn0034158, exon 8 of 8) protein_coding-exon (FBgn0034158, exon 8 of 8) -1341 FBgn0040743 FBgn0040743 FBtr0087032 CG15919 protein_coding CG8478-S2-modencode_R2_peak_532 chr2R 3579290 3579499 + 11 NA intron (FBgn0033212, intron 1 of 18) protein_coding-intron (FBgn0033212, intron 1 of 18) 7013 FBgn0033212 FBgn0033212 FBtr0088940 CG1399 protein_coding CG8478-S2-modencode_R2_peak_1254 chr3L 1970258 1970455 + 11 NA promoter-TSS (FBgn0027547) protein_coding-promoter-TSS (FBgn0027547) 844 FBgn0035299 FBgn0035299 FBtr0072852 CG11815 protein_coding CG8478-S2-modencode_R2_peak_2329 chr3R 20038054 20038180 + 11 NA intron (FBgn0011725, intron 5 of 7) protein_coding-intron (FBgn0011725, intron 5 of 7) 6323 FBgn0039167 FBgn0039167 FBtr0084572 CG17786 protein_coding CG8478-S2-modencode_R2_peak_351 chr2L 16641900 16642019 + 11 NA intron (FBgn0259735, intron 3 of 5) protein_coding-intron (FBgn0259735, intron 2 of 4) -15156 FBgn0259735 FBgn0259735 FBtr0300005 CG42389 protein_coding CG8478-S2-modencode_R2_peak_414 chr2L 20822173 20822390 + 11 NA Intergenic Intergenic -1414 FBgn0032888 FBgn0032888 FBtr0301291 CheB38c protein_coding CG8478-S2-modencode_R2_peak_492 chr2R 2357970 2358076 + 11 NA Intergenic Intergenic 63077 FBgn0264506 FBgn0264506 FBtr0332951 CR43905 ncRNA CG8478-S2-modencode_R2_peak_617 chr2R 6012182 6012350 + 11 NA exon (FBgn0050011, exon 1 of 12) protein_coding-exon (FBgn0050011, exon 1 of 12) 473 FBgn0050011 FBgn0050011 FBtr0300943 gem protein_coding CG8478-S2-modencode_R2_peak_1681 chr3L 18237736 18237928 + 11 NA Intergenic Intergenic -7356 FBgn0036783 FBgn0036783 FBtr0075129 CheA75a protein_coding CG8478-S2-modencode_R2_peak_413 chr2L 20803861 20804108 + 11 NA intron (FBgn0032886, intron 1 of 2) protein_coding-intron (FBgn0032886, intron 1 of 2) -6074 FBgn0032886 FBgn0032886 FBtr0081416 CG9328 protein_coding CG8478-S2-modencode_R2_peak_3115 chrX 12641146 12641305 + 11 NA exon (FBgn0030418, exon 2 of 2) protein_coding-exon (FBgn0030418, exon 2 of 2) 875 FBgn0030418 FBgn0030418 FBtr0333722 CG4004 protein_coding CG8478-S2-modencode_R2_peak_721 chr2R 7189777 7190045 + 11 NA exon (FBgn0033615, exon 2 of 10) protein_coding-exon (FBgn0033615, exon 2 of 10) 581 FBgn0033614 FBgn0033614 FBtr0088171 Obp47b protein_coding CG8478-S2-modencode_R2_peak_2215 chr3R 16372513 16372667 + 11 NA intron (FBgn0016917, intron 1 of 8) protein_coding-intron (FBgn0016917, intron 1 of 7) 4262 FBgn0016917 FBgn0016917 FBtr0100457 Stat92E protein_coding CG8478-S2-modencode_R2_peak_1949 chr3R 5906758 5906928 + 11 NA Intergenic Intergenic -5748 FBgn0037786 FBgn0037786 FBtr0309853 CG5361 protein_coding CG8478-S2-modencode_R2_peak_1989 chr3R 7396023 7396191 + 11 NA intron (FBgn0263316, intron 1 of 7) protein_coding-intron (FBgn0263316, intron 1 of 7) 1135 FBgn0263316 FBgn0263316 FBtr0302027 Mrp4 protein_coding CG8478-S2-modencode_R2_peak_67 chr2L 2163616 2163768 + 11 NA intron (FBgn0000097, intron 1 of 3) protein_coding-intron (FBgn0000097, intron 1 of 3) 7932 FBgn0031393 FBgn0031393 FBtr0077832 CG15382 protein_coding CG8478-S2-modencode_R2_peak_3070 chrX 11694112 11694274 + 11 NA exon (FBgn0000259, exon 7 of 7) protein_coding-exon (FBgn0000259, exon 7 of 7) 5200 FBgn0001218 FBgn0001218 FBtr0073611 Hsc70-3 protein_coding CG8478-S2-modencode_R2_peak_1388 chr3L 7712228 7712364 + 11 NA promoter-TSS (FBgn0035811) protein_coding-promoter-TSS (FBgn0035811) -165 FBgn0035811 FBgn0035811 FBtr0076808 CG12262 protein_coding CG8478-S2-modencode_R2_peak_2858 chrX 6749825 6749943 + 11 NA Intergenic Intergenic -3213 FBgn0029915 FBgn0029915 FBtr0071040 CG14434 protein_coding CG8478-S2-modencode_R2_peak_1996 chr3R 7605534 7605608 + 11 NA promoter-TSS (FBgn0086910) protein_coding-promoter-TSS (FBgn0086910) -1500 FBgn0086910 FBgn0086910 FBtr0082533 l(3)neo38 protein_coding CG8478-S2-modencode_R2_peak_416 chr2L 20825317 20825575 + 11 NA promoter-TSS (FBgn0032889) protein_coding-promoter-TSS (FBgn0032889) 1010 FBgn0032889 FBgn0032889 FBtr0081418 CG9331 protein_coding CG8478-S2-modencode_R2_peak_3000 chrX 10191399 10191524 + 11 NA intron (FBgn0259170, intron 2 of 6) protein_coding-intron (FBgn0259170, intron 2 of 6) -7354 FBgn0259170 FBgn0259170 FBtr0300511 alpha-Man-I protein_coding CG8478-S2-modencode_R2_peak_54 chr2L 1884718 1884854 + 11 NA promoter-TSS (FBgn0031373) protein_coding-promoter-TSS (FBgn0031373) 164 FBgn0031374 FBgn0031374 FBtr0110882 CG7337 protein_coding CG8478-S2-modencode_R2_peak_2554 chr4 86621 86748 + 11 NA promoter-TSS (FBgn0263851) snoRNA-promoter-TSS (FBgn0263851) -413 FBgn0263851 FBgn0263851 FBtr0321323 snoRNA:CD-24 snoRNA CG8478-S2-modencode_R2_peak_2965 chrX 9516441 9516837 + 11 NA TTS (FBgn0261931) protein_coding-TTS (FBgn0261931) 6548 FBgn0261931 FBgn0261931 FBtr0303709 CG42797 protein_coding CG8478-S2-modencode_R2_peak_2348 chr3R 20451590 20451844 + 11 NA promoter-TSS (FBgn0039212) protein_coding-promoter-TSS (FBgn0039212) -415 FBgn0039212 FBgn0039212 FBtr0084670 Syx18 protein_coding CG8478-S2-modencode_R2_peak_1713 chr3L 19624990 19625156 + 11 NA intron (FBgn0036896, intron 2 of 7) protein_coding-intron (FBgn0036896, intron 2 of 7) 1123 FBgn0036896 FBgn0036896 FBtr0302513 wnd protein_coding CG8478-S2-modencode_R2_peak_2320 chr3R 19827524 19827641 + 11 NA intron (FBgn0020647, intron 6 of 10) protein_coding-intron (FBgn0020647, intron 7 of 11) 4168 FBgn0020647 FBgn0020647 FBtr0301419 KrT95D protein_coding CG8478-S2-modencode_R2_peak_2651 chrX 1183078 1183209 + 11 NA TTS (FBgn0025642) protein_coding-TTS (FBgn0025642) 1820 FBgn0025642 FBgn0025642 FBtr0070206 CG32812 protein_coding CG8478-S2-modencode_R2_peak_1313 chr3L 3437471 3437839 + 11 NA intron (FBgn0026259, intron 7 of 8) protein_coding-intron (FBgn0026259, intron 7 of 8) -19728 FBgn0014388 FBgn0014388 FBtr0073146 sty protein_coding CG8478-S2-modencode_R2_peak_597 chr2R 5744831 5744998 + 11 NA promoter-TSS (FBgn0027580) protein_coding-promoter-TSS (FBgn0027580) -6242 FBgn0050010 FBgn0050010 FBtr0088374 CG30010 protein_coding CG8478-S2-modencode_R2_peak_366 chr2L 18562518 18562618 + 11 NA intron (FBgn0085370, intron 1 of 17) protein_coding-intron (FBgn0085370, intron 1 of 16) 9080 FBgn0085370 FBgn0085370 FBtr0303162 Pde11 protein_coding CG8478-S2-modencode_R2_peak_1735 chr3L 20501841 20501934 + 11 NA promoter-TSS (FBgn0052425) protein_coding-promoter-TSS (FBgn0052425) 2755 FBgn0037005 FBgn0037005 FBtr0078208 CG5078 protein_coding CG8478-S2-modencode_R2_peak_2509 chr3R 26607059 26607192 + 11 NA intron (FBgn0004606, intron 3 of 4) protein_coding-intron (FBgn0004606, intron 3 of 4) 10255 FBgn0262444 FBgn0262444 FBtr0304453 mir-1013 pre_miRNA CG8478-S2-modencode_R2_peak_1931 chr3R 5329538 5329626 + 11 NA promoter-TSS (FBgn0037700) protein_coding-promoter-TSS (FBgn0037700) -801 FBgn0037700 FBgn0037700 FBtr0082061 CG8149 protein_coding CG8478-S2-modencode_R2_peak_1204 chr3L 546652 546764 + 11 NA intron (FBgn0035142, intron 1 of 10) protein_coding-intron (FBgn0035142, intron 1 of 10) -3777 FBgn0035141 FBgn0035141 FBtr0072564 Cypl protein_coding CG8478-S2-modencode_R2_peak_2304 chr3R 19169576 19169772 + 11 NA intron (FBgn0003118, intron 1 of 8) protein_coding-intron (FBgn0003118, intron 1 of 8) 2210 FBgn0003118 FBgn0003118 FBtr0089715 pnt protein_coding CG8478-S2-modencode_R2_peak_1293 chr3L 3385092 3385223 + 11 NA Intergenic Intergenic 6889 FBgn0035445 FBgn0035445 FBtr0073077 CG12014 protein_coding CG8478-S2-modencode_R2_peak_1032 chr2R 15245761 15245921 + 11 NA promoter-TSS (FBgn0034436) protein_coding-promoter-TSS (FBgn0034436) 20 FBgn0034436 FBgn0034436 FBtr0086520 CG11961 protein_coding CG8478-S2-modencode_R2_peak_1593 chr3L 15828017 15828087 + 11 NA TTS (FBgn0036538) protein_coding-TTS (FBgn0036538) 436 FBgn0036537 FBgn0036537 FBtr0332134 CG18081 protein_coding CG8478-S2-modencode_R2_peak_2569 chr4 1033657 1033857 + 11 NA TTS (FBgn0025741) protein_coding-TTS (FBgn0025741) 13963 FBgn0025741 FBgn0025741 FBtr0100296 plexA protein_coding CG8478-S2-modencode_R2_peak_418 chr2L 20970931 20971110 + 11 NA intron (FBgn0250867, intron 5 of 6) protein_coding-intron (FBgn0250867, intron 1 of 1) -2053 FBgn0250867 FBgn0250867 FBtr0331200 CG42238 protein_coding CG8478-S2-modencode_R2_peak_1960 chr3R 5921954 5922271 + 11 NA exon (FBgn0263413, exon 1 of 1) ncRNA-exon (FBgn0263413, exon 1 of 1) 2628 FBgn0263413 FBgn0263413 FBtr0309196 CR43459 ncRNA CG8478-S2-modencode_R2_peak_2738 chrX 3295014 3295125 + 10 NA intron (FBgn0029657, intron 3 of 4) protein_coding-intron (FBgn0029657, intron 2 of 3) 26487 FBgn0052493 FBgn0052493 FBtr0070533 tRNA:CR32493 tRNA CG8478-S2-modencode_R2_peak_1966 chr3R 5938095 5938242 + 10 NA promoter-TSS (FBgn0037788) protein_coding-promoter-TSS (FBgn0037788) -100 FBgn0037788 FBgn0037788 FBtr0082179 CG3940 protein_coding CG8478-S2-modencode_R2_peak_3063 chrX 11579007 11579176 + 10 NA intron (FBgn0014133, intron 3 of 6) protein_coding-intron (FBgn0014133, intron 3 of 5) 6063 FBgn0014133 FBgn0014133 FBtr0073526 bif protein_coding CG8478-S2-modencode_R2_peak_1279 chr3L 3077705 3077877 + 10 NA promoter-TSS (FBgn0035397) protein_coding-promoter-TSS (FBgn0035397) 4584 FBgn0035397 FBgn0035397 FBtr0072996 CG11486 protein_coding CG8478-S2-modencode_R2_peak_1898 chr3R 4948607 4948758 + 10 NA intron (FBgn0003165, intron 1 of 6) protein_coding-intron (FBgn0003165, intron 8 of 12) 34990 FBgn0003165 FBgn0003165 FBtr0305197 pum protein_coding CG8478-S2-modencode_R2_peak_1511 chr3L 11238420 11238637 + 10 NA Intergenic Intergenic -6882 FBgn0041094 FBgn0041094 FBtr0076168 scyl protein_coding CG8478-S2-modencode_R2_peak_1012 chr2R 14709816 14709920 + 10 NA TTS (FBgn0010551) protein_coding-TTS (FBgn0010551) 2867 FBgn0010551 FBgn0010551 FBtr0112863 l(2)03709 protein_coding CG8478-S2-modencode_R2_peak_2071 chr3R 11001959 11002130 + 10 NA intron (FBgn0038294, intron 4 of 7) protein_coding-intron (FBgn0038294, intron 4 of 5) 3948 FBgn0038294 FBgn0038294 FBtr0306642 Mf protein_coding CG8478-S2-modencode_R2_peak_1187 chr2R 20963773 20964099 + 10 NA promoter-TSS (FBgn0050199) tRNA-promoter-TSS (FBgn0050199) -352 FBgn0050199 FBgn0050199 FBtr0072446 tRNA:CR30199 tRNA CG8478-S2-modencode_R2_peak_2534 chr3R 27431682 27431785 + 10 NA intron (FBgn0039858, intron 1 of 5) protein_coding-intron (FBgn0039858, intron 1 of 5) 4973 FBgn0039858 FBgn0039858 FBtr0085803 CycG protein_coding CG8478-S2-modencode_R2_peak_854 chr2R 11622673 11622781 + 10 NA exon (FBgn0050089, exon 3 of 7) protein_coding-exon (FBgn0050089, exon 3 of 7) 7824 FBgn0050089 FBgn0050089 FBtr0087285 CG30089 protein_coding CG8478-S2-modencode_R2_peak_877 chr2R 12046118 12046328 + 10 NA promoter-TSS (FBgn0034082) protein_coding-promoter-TSS (FBgn0034082) 76 FBgn0034082 FBgn0034082 FBtr0087250 CG10734 protein_coding CG8478-S2-modencode_R2_peak_2517 chr3R 26714552 26714670 + 10 NA promoter-TSS (FBgn0000416) protein_coding-promoter-TSS (FBgn0000416) -63 FBgn0000416 FBgn0000416 FBtr0085714 Sap-r protein_coding CG8478-S2-modencode_R2_peak_1459 chr3L 9685314 9685442 + 10 NA intron (FBgn0036030, intron 2 of 7) protein_coding-intron (FBgn0036030, intron 2 of 6) 4422 FBgn0036030 FBgn0036030 FBtr0333856 CG6767 protein_coding CG8478-S2-modencode_R2_peak_2568 chr4 1016086 1016279 + 10 NA intron (FBgn0019650, intron 2 of 8) protein_coding-intron (FBgn0019650, intron 2 of 8) 5831 FBgn0019650 FBgn0019650 FBtr0089185 toy protein_coding CG8478-S2-modencode_R2_peak_3145 chrX 13716125 13716271 + 10 NA promoter-TSS (FBgn0027537) protein_coding-promoter-TSS (FBgn0027537) -661 FBgn0027537 FBgn0027537 FBtr0331714 CG11092 protein_coding CG8478-S2-modencode_R2_peak_931 chr2R 13354465 13354662 + 10 NA intron (FBgn0034223, intron 3 of 3) protein_coding-intron (FBgn0034223, intron 3 of 3) 2118 FBgn0034223 FBgn0034223 FBtr0086954 Tes protein_coding CG8478-S2-modencode_R2_peak_1896 chr3R 4859970 4860077 + 10 NA promoter-TSS (FBgn0002932) protein_coding-promoter-TSS (FBgn0002932) -3978 FBgn0037657 FBgn0037657 FBtr0081968 hyx protein_coding CG8478-S2-modencode_R2_peak_2710 chrX 2492196 2492397 + 10 NA TTS (FBgn0011606) protein_coding-TTS (FBgn0011606) 5789 FBgn0011606 FBgn0011606 FBtr0070448 Klp3A protein_coding CG8478-S2-modencode_R2_peak_1414 chr3L 8067064 8067174 + 10 NA promoter-TSS (FBgn0262579) protein_coding-promoter-TSS (FBgn0262579) 3067 FBgn0262579 FBgn0262579 FBtr0304994 Ect4 protein_coding CG8478-S2-modencode_R2_peak_1457 chr3L 9682869 9682992 + 10 NA intron (FBgn0036030, intron 2 of 7) protein_coding-intron (FBgn0036030, intron 2 of 6) 4659 FBgn0036029 FBgn0036029 FBtr0076394 CG16719 protein_coding CG8478-S2-modencode_R2_peak_2212 chr3R 16136633 16136816 + 10 NA intron (FBgn0261550, intron 2 of 9) protein_coding-intron (FBgn0261550, intron 1 of 8) -3466 FBgn0038784 FBgn0038784 FBtr0083900 CG4362 protein_coding CG8478-S2-modencode_R2_peak_2045 chr3R 9851831 9851951 + 10 NA promoter-TSS (FBgn0264493) protein_coding-promoter-TSS (FBgn0264493) -210 FBgn0264493 FBgn0264493 FBtr0301632 rdx protein_coding CG8478-S2-modencode_R2_peak_584 chr2R 5323231 5323400 + 10 NA exon (FBgn0029092, exon 5 of 7) protein_coding-exon (FBgn0029092, exon 5 of 7) 5751 FBgn0029092 FBgn0029092 FBtr0088550 ced-6 protein_coding CG8478-S2-modencode_R2_peak_606 chr2R 5912867 5912976 + 10 NA intron (FBgn0022382, intron 1 of 9) protein_coding-intron (FBgn0022382, intron 1 of 9) 626 FBgn0022382 FBgn0022382 FBtr0112902 Pka-R2 protein_coding CG8478-S2-modencode_R2_peak_1665 chr3L 17986576 17986736 + 10 NA intron (FBgn0000568, intron 3 of 7) protein_coding-intron (FBgn0000568, intron 1 of 5) 9522 FBgn0086081 FBgn0086081 FBtr0114357 snoRNA:Me28S-A30 snoRNA CG8478-S2-modencode_R2_peak_21 chr2L 494873 494984 + 10 NA intron (FBgn0003963, intron 2 of 8) protein_coding-intron (FBgn0003963, intron 1 of 7) -15240 FBgn0043364 FBgn0043364 FBtr0310030 cbt protein_coding CG8478-S2-modencode_R2_peak_2902 chrX 7984526 7984705 + 10 NA intron (FBgn0029996, intron 1 of 1) protein_coding-intron (FBgn0029996, intron 1 of 1) 1510 FBgn0029996 FBgn0029996 FBtr0071114 Ubc-E2H protein_coding CG8478-S2-modencode_R2_peak_6 chr2L 169189 169313 + 10 NA intron (FBgn0016977, intron 3 of 13) protein_coding-intron (FBgn0016977, intron 2 of 10) -10587 FBgn0053635 FBgn0053635 FBtr0091612 CG33635 protein_coding CG8478-S2-modencode_R2_peak_2147 chr3R 12879554 12879714 + 10 NA promoter-TSS (FBgn0020493) protein_coding-promoter-TSS (FBgn0020493) -95 FBgn0020493 FBgn0020493 FBtr0083394 Dad protein_coding CG8478-S2-modencode_R2_peak_400 chr2L 19791252 19791410 + 10 NA promoter-TSS (FBgn0032822) protein_coding-promoter-TSS (FBgn0032822) 551 FBgn0032821 FBgn0032821 FBtr0300967 CdGAPr protein_coding CG8478-S2-modencode_R2_peak_491 chr2R 2213326 2213444 + 10 NA Intergenic Intergenic 80344 FBgn0033075 FBgn0033075 FBtr0114492 Pld protein_coding CG8478-S2-modencode_R2_peak_2197 chr3R 14978912 14979003 + 10 NA TTS (FBgn0038683) protein_coding-TTS (FBgn0038683) 445 FBgn0038682 FBgn0038682 FBtr0083751 CG5835 protein_coding CG8478-S2-modencode_R2_peak_707 chr2R 7075176 7075295 + 10 NA intron (FBgn0003396, intron 1 of 7) protein_coding-intron (FBgn0003396, intron 1 of 7) 13927 FBgn0003396 FBgn0003396 FBtr0088100 shn protein_coding CG8478-S2-modencode_R2_peak_29 chr2L 506504 506618 + 10 NA intron (FBgn0003963, intron 2 of 8) protein_coding-intron (FBgn0003963, intron 1 of 7) -26873 FBgn0043364 FBgn0043364 FBtr0310030 cbt protein_coding CG8478-S2-modencode_R2_peak_1693 chr3L 18782765 18783010 + 10 NA intron (FBgn0001078, intron 2 of 9) protein_coding-intron (FBgn0001078, intron 2 of 9) -24043 FBgn0001078 FBgn0001078 FBtr0075087 ftz-f1 protein_coding CG8478-S2-modencode_R2_peak_1017 chr2R 15032428 15032644 + 10 NA promoter-TSS (FBgn0034418) protein_coding-promoter-TSS (FBgn0034418) 485 FBgn0263290 FBgn0263290 FBtr0308635 CR43399 ncRNA CG8478-S2-modencode_R2_peak_680 chr2R 6962970 6963168 + 10 NA intron (FBgn0040765, intron 2 of 4) protein_coding-intron (FBgn0040765, intron 2 of 4) -10022 FBgn0262817 FBgn0262817 FBtr0306049 CG43188 protein_coding CG8478-S2-modencode_R2_peak_836 chr2R 10512259 10512354 + 10 NA TTS (FBgn0082930) snoRNA-TTS (FBgn0082930) 548 FBgn0082919 FBgn0082919 FBtr0113511 snoRNA:Or-CD4 snoRNA CG8478-S2-modencode_R2_peak_1618 chr3L 16847854 16848047 + 10 NA intron (FBgn0003410, intron 1 of 1) protein_coding-intron (FBgn0003410, intron 1 of 1) -1069 FBgn0003410 FBgn0003410 FBtr0075333 sina protein_coding CG8478-S2-modencode_R2_peak_3074 chrX 11904810 11904880 + 10 NA TTS (FBgn0030360) protein_coding-TTS (FBgn0030360) 1397 FBgn0030361 FBgn0030361 FBtr0073579 CG1492 protein_coding CG8478-S2-modencode_R2_peak_839 chr2R 10687105 10687214 + 10 NA promoter-TSS (FBgn0001319) protein_coding-promoter-TSS (FBgn0001319) -2627 FBgn0001319 FBgn0001319 FBtr0329882 kn protein_coding CG8478-S2-modencode_R2_peak_3297 chrX 20926392 20926489 + 10 NA intron (FBgn0031150, intron 1 of 6) protein_coding-intron (FBgn0031150, intron 1 of 6) 867 FBgn0031150 FBgn0031150 FBtr0077247 bves protein_coding CG8478-S2-modencode_R2_peak_2667 chrX 1774943 1775050 + 10 NA TTS (FBgn0023518) protein_coding-TTS (FBgn0023518) 432 FBgn0029594 FBgn0029594 FBtr0331384 CG14806 protein_coding CG8478-S2-modencode_R2_peak_2834 chrX 5794441 5794602 + 10 NA promoter-TSS (FBgn0000042) protein_coding-promoter-TSS (FBgn0000042) -373 FBgn0000042 FBgn0000042 FBtr0070823 Act5C protein_coding CG8478-S2-modencode_R2_peak_2550 chr4 67888 68015 + 10 NA TTS (FBgn0004859) protein_coding-TTS (FBgn0004859) -3547 FBgn0025740 FBgn0025740 FBtr0089179 plexB protein_coding CG8478-S2-modencode_R2_peak_1801 chr3R 974939 975152 + 10 NA Intergenic Intergenic -10289 FBgn0037294 FBgn0037294 FBtr0078773 CG12590 protein_coding CG8478-S2-modencode_R2_peak_2894 chrX 7830138 7830343 + 10 NA TTS (FBgn0004404) protein_coding-TTS (FBgn0004404) 311 FBgn0260970 FBgn0260970 FBtr0331299 CG42593 protein_coding CG8478-S2-modencode_R2_peak_383 chr2L 19001807 19001966 + 10 NA exon (FBgn0051792, exon 9 of 10) protein_coding-exon (FBgn0051792, exon 9 of 10) -1524 FBgn0051793 FBgn0051793 FBtr0310616 CG31793 protein_coding CG8478-S2-modencode_R2_peak_596 chr2R 5728828 5728913 + 10 NA TTS (FBgn0033451) protein_coding-TTS (FBgn0033451) 1144 FBgn0033452 FBgn0033452 FBtr0089394 CG1599 protein_coding CG8478-S2-modencode_R2_peak_3036 chrX 10614991 10615077 + 10 NA intron (FBgn0052676, intron 2 of 3) protein_coding-intron (FBgn0052676, intron 2 of 3) -23501 FBgn0003204 FBgn0003204 FBtr0071496 ras protein_coding CG8478-S2-modencode_R2_peak_1348 chr3L 4364349 4364460 + 10 NA promoter-TSS (FBgn0035534) protein_coding-promoter-TSS (FBgn0035534) -146 FBgn0035534 FBgn0035534 FBtr0306093 mRpS6 protein_coding CG8478-S2-modencode_R2_peak_2459 chr3R 25563177 25563277 + 10 NA promoter-TSS (FBgn0027583) protein_coding-promoter-TSS (FBgn0027583) 571 FBgn0039689 FBgn0039689 FBtr0085473 CG7598 protein_coding CG8478-S2-modencode_R2_peak_1886 chr3R 4641249 4641367 + 10 NA exon (FBgn0037636, exon 2 of 2) protein_coding-exon (FBgn0037636, exon 2 of 2) -4032 FBgn0262604 FBgn0262604 FBtr0305278 CG43130 protein_coding CG8478-S2-modencode_R2_peak_2747 chrX 3347725 3347908 + 10 NA Intergenic Intergenic 6457 FBgn0029659 FBgn0029659 FBtr0331608 CG16782 protein_coding CG8478-S2-modencode_R2_peak_1189 chr2R 21102856 21102972 + 10 NA intron (FBgn0035094, intron 2 of 8) protein_coding-intron (FBgn0035094, intron 2 of 8) -11220 FBgn0001325 FBgn0001325 FBtr0072449 Kr protein_coding CG8478-S2-modencode_R2_peak_255 chr2L 11002547 11002631 + 10 NA TTS (FBgn0015756) protein_coding-TTS (FBgn0015756) 517 FBgn0040096 FBgn0040096 FBtr0113317 lectin-33A protein_coding CG8478-S2-modencode_R2_peak_1631 chr3L 17523571 17523853 + 10 NA promoter-TSS (FBgn0036735) protein_coding-promoter-TSS (FBgn0036735) 531 FBgn0259174 FBgn0259174 FBtr0299642 Nedd4 protein_coding CG8478-S2-modencode_R2_peak_1442 chr3L 8948379 8948490 + 10 NA promoter-TSS (FBgn0264307) protein_coding-promoter-TSS (FBgn0264307) 313 FBgn0040321 FBgn0040321 FBtr0076510 GNBP3 protein_coding CG8478-S2-modencode_R2_peak_1893 chr3R 4762184 4762307 + 10 NA exon (FBgn0003015, exon 3 of 4) protein_coding-exon (FBgn0003015, exon 3 of 4) 1392 FBgn0003015 FBgn0003015 FBtr0081956 osk protein_coding CG8478-S2-modencode_R2_peak_534 chr2R 3581818 3581914 + 10 NA intron (FBgn0033212, intron 1 of 18) protein_coding-intron (FBgn0033212, intron 1 of 18) 4541 FBgn0033212 FBgn0033212 FBtr0088940 CG1399 protein_coding CG8478-S2-modencode_R2_peak_3113 chrX 12633951 12634126 + 10 NA intron (FBgn0263865, intron 2 of 10) protein_coding-intron (FBgn0263865, intron 1 of 9) 2439 FBgn0263865 FBgn0263865 FBtr0333766 Smr protein_coding CG8478-S2-modencode_R2_peak_2415 chr3R 22778727 22778903 + 10 NA exon (FBgn0039464, exon 1 of 5) protein_coding-exon (FBgn0039464, exon 1 of 5) 160 FBgn0039464 FBgn0039464 FBtr0085085 CG6330 protein_coding CG8478-S2-modencode_R2_peak_2910 chrX 8304870 8304958 + 10 NA promoter-TSS (FBgn0262976) protein_coding-promoter-TSS (FBgn0262976) -783 FBgn0262976 FBgn0262976 FBtr0307287 lawc protein_coding CG8478-S2-modencode_R2_peak_2877 chrX 7511407 7511575 + 10 NA intron (FBgn0004198, intron 1 of 6) protein_coding-intron (FBgn0004198, intron 1 of 6) 8310 FBgn0004198 FBgn0004198 FBtr0071069 ct protein_coding CG8478-S2-modencode_R2_peak_889 chr2R 12157510 12157668 + 10 NA exon (FBgn0001308, exon 2 of 4) protein_coding-exon (FBgn0001308, exon 2 of 4) 1894 FBgn0001308 FBgn0001308 FBtr0087184 Khc protein_coding CG8478-S2-modencode_R2_peak_454 chr2R 1597558 1597670 + 10 NA promoter-TSS (FBgn0000099) protein_coding-promoter-TSS (FBgn0000099) 6940 FBgn0000099 FBgn0000099 FBtr0300504 ap protein_coding CG8478-S2-modencode_R2_peak_1232 chr3L 686105 686308 + 10 NA promoter-TSS (FBgn0035153) protein_coding-promoter-TSS (FBgn0035153) -657 FBgn0035153 FBgn0035153 FBtr0072610 ebd1 protein_coding CG8478-S2-modencode_R2_peak_1505 chr3L 11083582 11083722 + 10 NA intron (FBgn0020412, intron 2 of 7) protein_coding-intron (FBgn0020412, intron 2 of 8) 2641 FBgn0020412 FBgn0020412 FBtr0076236 JIL-1 protein_coding CG8478-S2-modencode_R2_peak_1709 chr3L 19081315 19081509 + 10 NA Intergenic Intergenic -1886 FBgn0036844 FBgn0036844 FBtr0075035 Mkp3 protein_coding CG8478-S2-modencode_R2_peak_777 chr2R 8916786 8916905 + 10 NA Intergenic Intergenic 17948 FBgn0033788 FBgn0033788 FBtr0087797 CG13323 protein_coding CG8478-S2-modencode_R2_peak_215 chr2L 8711215 8711389 + 10 NA exon (FBgn0003209, exon 8 of 9) protein_coding-exon (FBgn0003209, exon 8 of 9) 5730 FBgn0032061 FBgn0032061 FBtr0079731 CG9314 protein_coding CG8478-S2-modencode_R2_peak_2333 chr3R 20058679 20058819 + 10 NA intron (FBgn0043884, intron 2 of 16) protein_coding-intron (FBgn0043884, intron 2 of 16) 2465 FBgn0043884 FBgn0043884 FBtr0084563 mask protein_coding CG8478-S2-modencode_R2_peak_944 chr2R 13775649 13775749 + 10 NA exon (FBgn0261362, exon 4 of 6) protein_coding-exon (FBgn0261362, exon 4 of 6) 1778 FBgn0261362 FBgn0261362 FBtr0302291 proPO-A1 protein_coding CG8478-S2-modencode_R2_peak_2241 chr3R 17014491 17014599 + 10 NA promoter-TSS (FBgn0264357) protein_coding-promoter-TSS (FBgn0264357) -20618 FBgn0260004 FBgn0260004 FBtr0084027 Snmp1 protein_coding CG8478-S2-modencode_R2_peak_2872 chrX 7211641 7211791 + 10 NA intron (FBgn0029943, intron 5 of 5) protein_coding-intron (FBgn0029943, intron 5 of 5) 6082 FBgn0029943 FBgn0029943 FBtr0071065 Atg5 protein_coding CG8478-S2-modencode_R2_peak_2422 chr3R 23069590 23069701 + 10 NA exon (FBgn0042111, exon 2 of 5) protein_coding-exon (FBgn0042111, exon 2 of 5) 895 FBgn0042111 FBgn0042111 FBtr0333327 CG18766 protein_coding CG8478-S2-modencode_R2_peak_175 chr2L 8027539 8027653 + 10 NA TTS (FBgn0031975) protein_coding-TTS (FBgn0031975) -1866 FBgn0031977 FBgn0031977 FBtr0079535 baf protein_coding CG8478-S2-modencode_R2_peak_2824 chrX 5512563 5512716 + 10 NA TTS (FBgn0004687) protein_coding-TTS (FBgn0004687) 195 FBgn0029778 FBgn0029778 FBtr0070785 RhoGAP5A protein_coding CG8478-S2-modencode_R2_peak_2644 chrX 1111826 1112030 + 10 NA TTS (FBgn0261444) protein_coding-TTS (FBgn0261444) -2739 FBgn0040366 FBgn0040366 FBtr0331735 CG11398 protein_coding CG8478-S2-modencode_R2_peak_189 chr2L 8232384 8232511 + 10 NA intron (FBgn0032006, intron 1 of 16) protein_coding-intron (FBgn0032006, intron 1 of 17) 7431 FBgn0032006 FBgn0032006 FBtr0303109 Pvr protein_coding CG8478-S2-modencode_R2_peak_403 chr2L 20084794 20084950 + 10 NA exon (FBgn0263773, exon 1 of 2) protein_coding-exon (FBgn0263773, exon 1 of 2) -4676 FBgn0263773 FBgn0263773 FBtr0310558 fok protein_coding CG8478-S2-modencode_R2_peak_2347 chr3R 20434470 20434553 + 10 NA intron (FBgn0263490, intron 2 of 4) protein_coding-intron (FBgn0263490, intron 2 of 5) 16791 FBgn0039212 FBgn0039212 FBtr0084670 Syx18 protein_coding CG8478-S2-modencode_R2_peak_3179 chrX 15604030 15604131 + 10 NA intron (FBgn0030672, intron 1 of 4) protein_coding-intron (FBgn0030672, intron 1 of 4) -1003 FBgn0030672 FBgn0030672 FBtr0074057 CG9281 protein_coding CG8478-S2-modencode_R2_peak_3141 chrX 13535728 13535920 + 10 NA intron (FBgn0030505, intron 1 of 8) protein_coding-intron (FBgn0030505, intron 1 of 9) -3388 FBgn0030505 FBgn0030505 FBtr0301451 NFAT protein_coding CG8478-S2-modencode_R2_peak_708 chr2R 7078542 7078720 + 10 NA intron (FBgn0003396, intron 2 of 7) protein_coding-intron (FBgn0003396, intron 2 of 7) 17323 FBgn0003396 FBgn0003396 FBtr0088100 shn protein_coding CG8478-S2-modencode_R2_peak_3208 chrX 16351218 16351455 + 10 NA Intergenic Intergenic 8626 FBgn0262734 FBgn0262734 FBtr0074281 Rbp2 protein_coding CG8478-S2-modencode_R2_peak_1729 chr3L 20213796 20213912 + 10 NA promoter-TSS (FBgn0036952) protein_coding-promoter-TSS (FBgn0036952) -334 FBgn0036952 FBgn0036952 FBtr0074855 CG6933 protein_coding CG8478-S2-modencode_R2_peak_73 chr2L 2363027 2363223 + 10 NA promoter-TSS (FBgn0014010) protein_coding-promoter-TSS (FBgn0014010) -1270 FBgn0014010 FBgn0014010 FBtr0330670 Rab5 protein_coding CG8478-S2-modencode_R2_peak_2674 chrX 1946188 1946308 + 10 NA promoter-TSS (FBgn0025632) protein_coding-promoter-TSS (FBgn0025632) -402 FBgn0025632 FBgn0025632 FBtr0070327 CG4313 protein_coding CG8478-S2-modencode_R2_peak_1535 chr3L 12268628 12268756 + 10 NA intron (FBgn0036272, intron 1 of 3) protein_coding-intron (FBgn0036272, intron 1 of 3) 1659 FBgn0036272 FBgn0036272 FBtr0076010 CG4300 protein_coding CG8478-S2-modencode_R2_peak_3280 chrX 19741319 19741444 + 10 NA intron (FBgn0261811, intron 1 of 3) protein_coding-intron (FBgn0261811, intron 1 of 3) -1661 FBgn0261811 FBgn0261811 FBtr0303996 pico protein_coding CG8478-S2-modencode_R2_peak_2969 chrX 9539790 9540107 + 10 NA promoter-TSS (FBgn0028341) protein_coding-promoter-TSS (FBgn0028341) -5291 FBgn0028341 FBgn0028341 FBtr0303559 l(1)G0232 protein_coding CG8478-S2-modencode_R2_peak_1803 chr3R 1042290 1042397 + 10 NA intron (FBgn0259212, intron 1 of 19) protein_coding-intron (FBgn0259212, intron 1 of 16) 804 FBgn0259212 FBgn0259212 FBtr0299710 cno protein_coding CG8478-S2-modencode_R2_peak_1147 chr2R 18959944 18960061 + 10 NA promoter-TSS (FBgn0050202) tRNA-promoter-TSS (FBgn0050202) -102 FBgn0050202 FBgn0050202 FBtr0071962 tRNA:CR30202 tRNA CG8478-S2-modencode_R2_peak_1083 chr2R 17049472 17049594 + 10 NA promoter-TSS (FBgn0011871) tRNA-promoter-TSS (FBgn0011871) 502 FBgn0050208 FBgn0050208 FBtr0071574 tRNA:CR30208 tRNA CG8478-S2-modencode_R2_peak_2954 chrX 9445285 9445461 + 10 NA promoter-TSS (FBgn0052700) protein_coding-promoter-TSS (FBgn0052700) -111 FBgn0052700 FBgn0052700 FBtr0071374 CG32700 protein_coding CG8478-S2-modencode_R2_peak_2475 chr3R 25702747 25703076 + 10 NA exon (FBgn0051038, exon 1 of 2) protein_coding-exon (FBgn0051038, exon 1 of 2) 7824 FBgn0083969 FBgn0083969 FBtr0110888 CG34133 protein_coding CG8478-S2-modencode_R2_peak_1352 chr3L 4545697 4545879 + 10 NA intron (FBgn0035558, intron 2 of 3) protein_coding-intron (FBgn0035558, intron 2 of 3) 3737 FBgn0035558 FBgn0035558 FBtr0113142 CG11357 protein_coding CG8478-S2-modencode_R2_peak_203 chr2L 8462453 8462554 + 10 NA intron (FBgn0026718, intron 1 of 3) protein_coding-intron (FBgn0026718, intron 1 of 2) 1487 FBgn0026718 FBgn0026718 FBtr0079704 fu12 protein_coding CG8478-S2-modencode_R2_peak_3072 chrX 11714647 11714757 + 10 NA intron (FBgn0262684, intron 1 of 7) protein_coding-intron (FBgn0262684, intron 1 of 7) 2332 FBgn0262684 FBgn0262684 FBtr0333015 CG43154 protein_coding