R version 3.6.2 (2019-12-12) Platform: x86_64-conda_cos6-linux-gnu (64-bit) Running under: Ubuntu 18.04.4 LTS Matrix products: default BLAS/LAPACK: /home/agalicina/hic_dros/chipseq/work/conda/nf-core-chipseq-1.2.1-0b60a52849fcfa2d1277f4b3e429984f/lib/libopenblasp-r0.3.10.so locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] parallel stats4 stats graphics grDevices utils datasets [8] methods base other attached packages: [1] lattice_0.20-41 pheatmap_1.0.12 [3] RColorBrewer_1.1-2 ggplot2_3.3.2 [5] vsn_3.54.0 DESeq2_1.26.0 [7] SummarizedExperiment_1.16.0 DelayedArray_0.12.0 [9] BiocParallel_1.20.0 matrixStats_0.56.0 [11] Biobase_2.46.0 GenomicRanges_1.38.0 [13] GenomeInfoDb_1.22.0 IRanges_2.20.0 [15] S4Vectors_0.24.0 BiocGenerics_0.32.0 [17] optparse_1.6.6 loaded via a namespace (and not attached): [1] bit64_4.0.5 splines_3.6.2 Formula_1.2-3 [4] BiocManager_1.30.10 affy_1.64.0 latticeExtra_0.6-29 [7] blob_1.2.1 GenomeInfoDbData_1.2.2 pillar_1.4.6 [10] RSQLite_2.2.0 backports_1.1.9 limma_3.42.0 [13] glue_1.4.2 digest_0.6.25 XVector_0.26.0 [16] checkmate_2.0.0 colorspace_1.4-1 preprocessCore_1.48.0 [19] htmltools_0.5.0 Matrix_1.2-18 XML_3.99-0.3 [22] pkgconfig_2.0.3 genefilter_1.68.0 zlibbioc_1.32.0 [25] purrr_0.3.4 xtable_1.8-4 scales_1.1.1 [28] affyio_1.56.0 jpeg_0.1-8.1 getopt_1.20.3 [31] htmlTable_2.0.1 tibble_3.0.3 annotate_1.64.0 [34] farver_2.0.3 generics_0.0.2 ellipsis_0.3.1 [37] withr_2.2.0 nnet_7.3-14 survival_3.2-3 [40] magrittr_1.5 crayon_1.3.4 memoise_1.1.0 [43] foreign_0.8-76 tools_3.6.2 data.table_1.12.8 [46] lifecycle_0.2.0 stringr_1.4.0 locfit_1.5-9.4 [49] munsell_0.5.0 cluster_2.1.0 AnnotationDbi_1.48.0 [52] compiler_3.6.2 rlang_0.4.7 grid_3.6.2 [55] RCurl_1.98-1.2 rstudioapi_0.11 htmlwidgets_1.5.1 [58] labeling_0.3 bitops_1.0-6 base64enc_0.1-3 [61] gtable_0.3.0 DBI_1.1.0 R6_2.4.1 [64] gridExtra_2.3 knitr_1.29 dplyr_1.0.2 [67] bit_4.0.4 Hmisc_4.4-1 stringi_1.4.6 [70] Rcpp_1.0.5 geneplotter_1.64.0 vctrs_0.3.4 [73] rpart_4.1-15 png_0.1-7 tidyselect_1.1.0 [76] xfun_0.15