9 1194 gam34.2 ATG GCA CAT AAT ATT AAC CTC AAT GAC TAC TTG AAT AGA GTT AAT GAT GCA CAC TAC AAT CAG GAT GGT GAT GCT GTG GCC GCG TTG CTA TCA TTT CGT CAA CCT CAT GTG ATG TCA CAC CGT CTC AAT GCT GAG AAG CCA GAT CGG GCC GTG GCC AAC ATC ATC TAT GCT CCA ATG GAC GAA GTT GTG TTG TCA CAT CTA AAG GTG GTG ATG TGG TAC CAC CGC GGC AAT GTG CTC GAG ATG TGG AAG GCC CAG TGC GCC GTG GTG ACA GCC GTG GCG CGT TTT ATG ACA AGC AGC AAA GAG GAG AAC TGG ATG TTG CCG CTC ATG AAC ACA GCG TGT CTG GAG TTA CGC CTT CAG AGC ATC TCG GCG GAC GCG GAA AGC GCC AAG ACT GGC AAC ACC AAG CCT TGT GAG CTG CTG GAG AAG ACA GCA GAG TCA CTG ATG GCC TGC TTC AGG GTG TGT GCT GCG GAC ACA CGT GCC AGC GAT AGT GAC ACC AAG CGG TGG GGT TTG CTC TAC CTT GTC AAC CAG TTC TTT AAA ATC TAT TTC AAA ATA AAC AAG CTC AAC TTG TGC AAG CCG ATG ATT CGT GCC ATT GAG TCC CTT GCC TTC AAG GAT CAG TAT CCT TTG TCG CAG CTC ATC ACC TAC AAG TAC TAC ACC GGC AGA AAG GCC ATG TTT GAC TCA GAC TTT AAA GGA GCC AAC ACT GCG CTC ACC TTC GCC TTC CAG CGT TGC CAT CAG CGC AGC CAC AAG AAC AAA CGA CGC ATC CTC ATC TAC CTG CTC CCT GTC AAA ATG CTC ATC GGC TAC ATC CCA AAG CAA TCA CTT CTG ATC AAG TAC AAC CTG AAG GAG TTT GTA GAC GTG GTG ACG GCC GTG CGT AAC GGC GAC ATC AGG CTG CTC AAC AAC ACG TTC CAG CGC TTC GAG CGC TTC TTC ATT GGT GCC GGC ATC TAC CTC ATC CTC GAG AAA CTC AAG TCC GTC GCC TAC AGA AAT CTT TTC AAA AAA ATC TAC GTG ATC AGA AAC AAC CAC CAA CTG GAC ATC GCA GTG TTT GTT CAG GCT CTG AAG TGG CTG CAG ATG GAG GAT GTG GAC GCC GAT GAG ACT GAG TGT CTC ATC GCC AAC ATG ATC AAC GAG GGG AGA GTT AAA GGC TAC ATC TCA CAC GCG CAC AAG AAG GTG GTC GTC AGT AAG AAG GAT GCC TTC CCT CCT CTT ACC CTC gam15.1 ATG GCA CAT AAT ATT AAC CTC ATG GAC TAC TTG AAT AGG GTT AAT GAT GCA CAC TAC AAT CAG GAT GGT GAT GCT GTG GCC GCG TTG CTA TCA TTT CGT CAA CCT CAT GTG ATG TCA CAC CGT CTC AAT GCT GAG AAG CCA GAT CGG GCC GTG TCC AAC ATC ATC TAT GCT CCA ATG GAT GAA GTT GTG TTG GCA CAT CTA AAG GTG GTG ATG TGG TAC CAC CGC GGC AAT GTG CTC GAG ATG TGG ACG GCC CAG ACC GCC GTG GTG TTA GCC GTG GCG CGT TTT ATG ACA GCC AGC AAA GAG GAG AAC TGG ATG TTG CCG CTC ATG AAC ACA GCG TGT CTA GAG TTA CGC CTT CAG AGC ATC TCG GCG GAC GCG GAA AGC GCC AAG ACT GGC AAC ACC AAG CCT TGT GAG CTG CTG GAG AAG ACA GCA GAG TCA CTG ATG GCC TGC TTC AGG GTG TGT GCT GCA GAC ACA CGT GCC AGC GAT AGT GAC ACC AAG CGG TGG GGT TTG CTC TAC CTT GTC AAC CAG TTC TTT AAA ATC TAT TTC AAA ATA AAC AAG CTC AAC TTG TGC AAG CCG ATG ATT CGT GCC ATT GAG TCC CTT GCC TTC AAG GAT CAG TAT CCT TTG TCG CAG CTC ATC ACC TAC AAG TAC TAC ACC GGC AGA AAG GCC ATG TTT GAC TCG GAC TTT AAA GGA GCC AAC ACT GCG CTC ACC TTC GCC TTC CAG CGT TGC CAT GCG CGC AGC CAC AAG AAC AAA CGA CGC ATC CTC ATC TAC CTG CTC CCT GTC AAA ATG CTC ATC GGC TAC ATC CCA AAG CAA TCA CTT CTG ATC AAG TAC AAC CTG AAG GAG TTT GTA GAC GTG GTG TCG GCC GTG CGT AAC GGC GAC ATC AGG CTG CTC AAC AAC ACG TTA CAG CGC TTT GAG CGC TTC TTC ATT GGT GCC GGC ATC TAC CTC ATC CTC GAG AAA CTC AAG TCC ATC GCC TAC AGA AAT CTT TTC AAA AAA ATC TAC GTG ATC AGA AAC AAC CAC CAA CTG GAC ATC GCA GTG TTT GTT CAT GCT CTG AAG TGG CTG AAG ATG GAG GAT GTG GAC GCC GAT GAG ACA GAG TGT CTC ATC GCC AAC ATG ATC AAC GAG GGG AAA GTT AAA GGC TAC ATC TCA CAC GCG CAC AAG AAG GTG GTC GTC AGT AAG AAG GAT GCC TTC CCT CCT CTT ACC CTC gam23.1 ATG GCA CAT AAC ATA AAC CTC AAT GAC TAC CTG AAT AGG GTT AAT GAT GCA CAC TAC AAC CAG GAT GGT GAA GCA GTG GCG GCG TTG CTA TCC TTT CGG CAA CCT CAC GTG ATG TCA CAC CGT CTC AAT GCA GAG AAG CCA GAT CGG GCT GTG GCC AAC ATC ATC TAC GCT CCA ATG GAT GAA GTT GTG CTA GCA CAT CTA AAG GTG GTC TCG TGG TAC CAC CGT GGC AAT GTG ATA GAG ATG TGG AAG GCC CAG TGC GCC ATG GTG ACG GCC GTA GCG CGG TTT ATG ACG AGC AGC AAA GAA GAA AAC TGG ATG TTG CCA CTC ATG AAC ACT TCG TGT CTG GAG TTA CGC CTT CAG AGC ATC TCG GCG GAC GCG GCA AGC ACC AAG TCA GGC GCC ACC AAG CCT GGT GAG CTG CTG GAG AAG ACA GCA GAC TCA CTG ATG GCC TGT TTC AGG GTG TGT GCT GCG GAC ACA CGT GCC AGC GAC AGT GAC ACC AAG CGG TGG GGT TTG CTC TAC CTT GTC AAC CAG TTC TTC AAA ATC TAT TTC AAA ATA AAC AAG CTT AAC TTG TGC AAG CCA ATG ATC CGT GCT ATT GAG TCC CTT GCC TTC AAG GAC CAG TAT CCT CTG TCG CAG CTC ATC ACC TAC AAG TAC TAC ACC GGT AGA AAG GCC ATG TTC GAC TCG GAC TTT AAA GGA GCC AAC ACT GCA CTC ACG TTC GCC TTC CAG CGT TGC CAT CAG CGC AGC CAC AAG AAC AAG CGA CGC ATC CTC ATC TAC CTG CTC CCC GTC AAG ATG CTC CTC GGC TAC ATC CCA AAG CAA TCA CTT CTG CTC AAG TAC AAC CTG AAG GAG TTT GTA GAC GTG GTG ACG GCC GTG CGT AAC GGC GAC ATC AGG CTG CTC AAC AAC ACG TTC CAG CGC TTC GAG CGC TTC TTC ATT GGT GCC GGC ATC TAC CTC ATC CTC GAG AAA CTC AAG TCC GTC GCC TAC AGA AAT CTA TTC AAA AAA ATC TAC GTG ATC AAA AAC AAC CAC CAG CTG GAC CTG GCA GTG TTC GTG CGG GCT CTG AAG TGG CTG CAG ATG GAG GAC GTG GAC GCC GAC GAG ACG GAG TGC CTC ATC GCA AAC ATG ATC TAC GAG GGG AAG GTC AAG GGC TAC ATC TCA CAC GCG CAC AAG AAG GTG GTC GTC AGT AAG AAG GAT GCC TTC CCT CCT CTT ACC CTC gam39.1 ATG GCA CAT AAT ATT AAC CTC ACT GAC TAC TTG AAT AGG GTT AAT GAT GCA CAC TAC AAT CAG GAT GGT GAT GCT GTG GCC GCG TTG CTA TCA TTT CGT CAA CCT CAT GTG ATG TCA CAC CGT CTC AAT GCT GAG AAG CCA GAT CGG GCC GTG TCC AAC ATC ATC TAT GCT CCA ATG GAT GAA GTT GTG TTG TCA CAT CTA AAG GTG GTG ATG TGG TAC CAC CGC GGC AAT GTG CTC GAG ATG TGG AAT GCC CAG TGC GCC GTG GTG ACA GCC GTG GCG CGT TTT ATG ACA AGC AGC AAA GAG GAG AAC TGG ATG TTG CCG CTC ATG AAC ACA GCG TGT CTG GAG TTA CGC CTT CAG AGC ATC TCG GCG GAC GCG GAA AGC GCC AAG ACC GGC AAC ACC AAG CCT TGT GAG CTG CTG GAG AAG ACA GCC GAG GCA CTG ATG GCC TGC TTC AGG GTG TGT GCT GCG GAC ACA CGT GCC AGC GAT AGT GAC ACC AAG CGG TGG GGT TTG CTC TAC CTT GTC AAC CAG TTC TTC AAA ATA TAT TTC AAA ATA AAC AAG CTC AAC TTG TGC AAG CCG ATG ATT CGT GCC ATT GAG TCC CTT GCC TTC AAG GAT CAG TAT CCT TTG TCG CAG CTC ATC ACC TAC AAG TAC TAC ACC GGC AGA AAG GCC ATG TTT GAC TCG GAC TTT AAA GGA GCC AAC ACT GCG CTC ACC TTC GCC TTC CAG CGT TGC CAT CAG CGC AGC CAC AAG AAC AAA CGA CGC ATC CTC ATC TAC CTG CTC CCT GTC AAA ATG CTC ATC GGC TAC ATC CCA AAG CAA TCA CTT CTG ATC AAG TAC AAC CTG AAG GAG TTT GTA GAC GTG GTG ACG GCC GTG CGT AAC GGC GAC ATC AGG CTG CTC AAC AAC ACG TTC CAG CGC TTC GAG CGC TTC TTC ATT GGT GCC GGC ATC TAC CTC ATC CTC GAG AAA CTC AAG TCC GTC GCC TAC AGA AAT CTT TTC AAG AAA ATC TAC GTG ATC AGA AAC AAC CAC CAA CTG GAC ATC GCA GTG TTT GTT CAG GCG CTG AAG TGG CTG AAG ATG GAT GAT GTG GAC GCC GAC GAG ACT GAG TGT CTC ATC GCC AAC ATG ATC AAC GAG GGG AAA GTT AAA GGC TAC ATC TCA CAC GCG CAC AAG AAG GTG GTC GTC AGT AAG AAG GAT GCA TTC CCT CCT CTT ACC CTC gam36.2 ATG GCA CAT AAT ATA AAC CTC AAT GAC TAC TTG AAT AGA GTT AAT GAT GCA CAC TAC AAT CAG GAT GGT GAT GCT GTG GCG GCG TTG CTA TCT TTT CGT CAA CCT CAC GTG ATG TCA CAC CGT CTC AAT GCT GAG AAA CCA GAT CGG GCC GTG ACC AAC ATC ATC TAT GCT CCA ATG GAT GAA GTT GTG TTA GCA CAT CTG AAG GTG GTG ATG TGG TAC CAC CGC GGC AAT GTG CTA GAG ATG TGG AAG TGC CAG TGC TCC ATG GTG ACA GCC GTG GCG CGT TTT ATG ACA AGC AGC AAA GAG GAG AAC TGG ATG TTG CCA CTT ATG AAC ACA GCG TGT CTG GAG TTA CGC CTT CAG AGC ATC TCG GCG GAC GCG GAA AGC GCC AAG TCT GGC GCC ACC AAG CCT GGT GAG CTG CTG GAA AAG ACA GCA GAC TCA CTG ATG GCC TGC TTC AGA GTG TGT GCT GCG GAC ACA CGT GCC AAC GAT AAT GAC ACC AAG CGG TGG GGT TTG CTC TAC CTT GTC AAC CAA TTC TTT AAA ATA TAT TTC AAA ATA AAC AAG CTC AAC CTG TGC AAG CCG ATG ATT CGT GCC ATT GAG TCA CTT GCC TTC AAG GAC CAG TAT CCT TTG TCG CAG CTC ATC ACC TAC AAG TAC TAC ACC GGC AGA AAG GCC ATG TTT GAC TCG GAC TTT AAA GGA GCC AAC ACA GCG CTC ACC TTC GCC TTC CAG CGC TGC AAT CAG CGC AGC CAC AAG AAC AAA CGA CGC ATC CTC ATC TAC CTG CTC CCA GTC AAA ATG CTC ATC GGC TAC ATC CCA AAG CAA TCA CTT CTG ATC AAG TAC AAC CTG AAG GAG TTT GTA GAC GTG GTG ACG GCC GTG CGT AAT GGC GAC ATC AGG CTG CTC AAC AAC ACG TTC CAG CGC TTC GAG CGC TTC TTC ATT GGT GCC GGC ATA TAC CTC ATC CTC GAG AAA CTC AAG TCC ATC GCG TAC AGA AAT CTT TTC AAA AAG ATC TAC GTG ATC AGA AAC AAC CAC CAA CTG GAC ATC GCA GTG TTT GTT CAG GCT CTT AAG TGG CTG CAG ATG GAG GAT GTG GAC GCA GAT GAG GCT GAG TGT CTC ATC GCC AAC ATG ATC TAC GAG GGG AAA GTT AAA GGT TAC ATC TCA CAC GCG CAC AAG AAG GTG GTC GTC AGT AAG AAG GAT GCC TTC CCT CCT CTT ACC CTC gam42.4 ATG GCA CAT AAT ATA AAC CTC AAT GAC TAC TTG AAT AGA GTT AAT GAT GCA CAC TAC AAT CAG GAT GGT GAT GCT GTG GCG GCG TTG CTA TCT TTT CGT CAA CCT CAT GTG ATG TCA CAC CGT CTC AAT GCT GAG AAA CCA GAT CGG GCC GTG GCC AAC ATC ATC TAT GCT CCA ATG GAT GAA GTT GTG TTA GCA CAT CTA AAG GTG GTG ATG TGG TAC CAC CGT GGC AAT GTG CTA GAG ATG TGG AAG TCC CAG TGC TCC ATG GTG ACA GCC GTG GCG CGT TTT ATG ACA AGC TGC AAA GAG GAG AAC TGG ATG TTG CCA CTC ATG AAC ACA GCG TGT CTA GAG TTA CGC CTT CAG AGC ATC TCA GCG GAC GCG GAA AGC ACC AAG TCT GGC GCC ACC AAG CCT GGT GAA CTG CTG GAA AAG ACA GCA GAC TCA CTG ATG GCC TGC TTC AGA GTG TGT GCT ACG GAC ACA CGT GCC GGC GAT AAT GAC ACC AAG CGG TGG GGT TTG CTC TAC CTT GTC AAC CAG TTC TTT AAA ATA TAT TTC AAA ATA AAC AAG CTC AAC CTC TGC AAG CCA ATG ATT CGT GCC ATT GAG TCA CTT GCC TTC AAG GAC CAG TAT CCT TCG TCG CAG CTC ATC ACC TAC AAG TAC TAC ACC GGC AGA AAG GCC ATG TTT GAC TCG GAC TTT AAA GGA GCC AAC ACA GCG CTC ACC TTC GCC TTC CAG CGC TGC CAT CAG CGC AGC CAC AAG AAC AAA CGA CGC ATC CTC ATA TAC CTG CTC CCA GTC AAG ATG CTC ATC GGC TAC ATC CCA AAG CCA TCA CTT CTG ATC AAG TAC AAC CTG AAG GAG TTT GTA GAC GTG GTG ACG GCC GTG CGT AAC GGT GAC ATC AGG CTG CTC AAC AAC ACG TTC CAG CGC TTC GAG CGC TTC TTC ATT GGT GCC GGC ATA TAC CTC ATA CTC GAG AAA CTC AAG TCT GTC GCG TAC AGA AAT CTT TTC AAA AAA ATC TAC GTG ATC AGA AAC AAC CAC CAA CTG GAC ATC GCA GTG TTT GTT CAG GCT CTT AAG TGG CTG CAG ATG GAG GAT GTG GAC GCC GAT GAG GCT GAG TGT CTC ATC GCC AAC ATG ATC TAC GAG GGG AAA GTT AAA GGT TAC ATC TCA CAC GCG CAC AAG AAG GTG GTC GTC AGT AAG AAG GAT GCC TTC CCT CCT CTT ACC CTC gam12.1 ATG GCA CAT AAT ATA AAC CTC AAT GAC TAC TTG AAT AGA GTT AAT GAT GCA CAC TAC AAT CAG GAT GGT GAT GCT GTG GCG GCG TTG CTA TCT TTT CGT CAA CCT CAT GTG ATG TCA CAC CGT CTC AAT GCT GAG AAA CCA GAT CGG GCT GTG GCC AAC ATC ATC TAT GCT CCA ATG GAT GAA GTT GTG TTA GCA CAT CTA AAG GTG GTG ATG TGG TAC CAC CGC GGC AAT GTG CTA GAG ATG TGG AAG ACC CAG TGC TCC ATG GTG ACA GCC GTG GCG CGT TTT ATG ACT AGC AGC AAA GAG GAG AAC TGG ATG TTG CCA CTT ATG AAC ACA GCG TGT CTG GAG TTA CGC CTT CAG AGC ATC TCG GCG GAC GCG GAA AGC GCC AAG TCT GGC GCC ACT AAG CCT GGT GAG CTG CTG GAA AAG ACA GCA GAC TCA CTG ATG GCC TGC TTC AGA GTG TGT GCT GCG GAC ACA CGT GCC AAC GAT AAT GAC ACC AAG CGG TGG GGT TTG CTC TAC CTT GTC AAC CAA TTC TTT AAA ATA TAT TTC AAA ATA AAC AAG CTC AAC CTG TGC AAG CCG ATG ATT CGT GCC ATT GAG TCA CTT GCC TTC AAG GAC CAG TAT CCT TTG TCG CAG CTC ATC ACC TAC AAG TAC TAC ACC GGC AGA AAG GCC ATG TTT GAC TCG GAC TTT AAA GGA GCC AAC ACA GCG CTC ACC TTC GCC TTC CAG CGC TGC CAT CAG CGC AGC CAC AAG AAC AAA CGA CGC ATC CTC ATC TAC CTG CTC CCA GTC AAA ATG CTC ATC GGC TAC ATC CCA AAG CAA TCA CTT CTG ATC AAG TAC AAC CTG AAG GAG TTT GTA GAC GTG GTG ACG GCC GTG CGT AAT GGC GAC ATC AGG CTG CTC AAC AAC ACG TTC CAG CGC TTC GAG CGC TTC TTC ATT GGT GCC GGC ATA TAC CTC ATC CTC GAG AAA CTC AAG TCC ATC GCG TAC AGA AAT CTT TTC AAA AAG ATC TAC GTG ATC AGA AAC AAC CAC CAA CTG GAC ATC GCA GTG TTT GTT CAG GCT CTT AAG TGG CTG AAG ATG GAA GAT GTG GAC GCC GAT GAG GCT GAG TGT CTT ATC GCC AAC ATG ATC TAC GAG GGG AAA GTT AAA GGT TAC ATC TCA CAC GCG CAC AAG AAG GTG GTC GTC AGT AAG AAG GAT GCC TTC CCT CCT CTT ACC CTC gam4.1 ATG GCA CAT AAT ATT AAC CTC AAT GAC TAC TTG AAT AGA GTT AAT GAT GCA CAC TAC AAT CAG GAT GGT GAT GCT GTG GCG GCG TTG CTA TCT TTT CGT CAA CCT CAT GTG ATG TCA CAC CGT CTC AAT GCT GAG AAA CCA GAT CGG GCC GTG GCC AAT ATC ATC TAT GCT CCA ATG GAT GAA GTT GTG TTA GCA CAT CTG AAG GTG GTG ATG TGG TAC CAC CGC GGC AAT GTG CTA GAG ATG TGG AAA ACC CAG TGC TCC ATG GTG ACA GCC GTG GCG CGT TTT ATG ACA AGC AGC AAA GAG GAG AAC TGG ATG TTG CCA CTT ATG AAC ACA GCG TGT CTA GAG TTA CGC CTA CAG AGC ATC TCG GCG GAT GCG GAA AGC GCC AAG TCT GGC GCC ACC AAG CCT GGT GAG CTG CTG GAA AAG ACG GCA GAC TCA CTG ATG GCC TGC TTC AGA GTG TGT GCT GCG GAC ACA CGT GCC AAC GAT AAT GAC ACC AAG CGG TGG GGT TTG CTC TAC CTT GTC AAC CAA TTC TTT AAA ATA TAT TTC AAA ATA AAC AAG CTC AAC CTG TGC AAG CCG ATG ATT CGT GCC ATT GAG TCA CTT GCC TTC AAG GAC CAG TAT CCT TTG TCG CAG CTC ATC ACC TAC AAG TAC TAC ACC GGC AGA AAG GCC ATG TTT GAC TCG GAC TTT AAA GGA GCC AAC ACA GCG CTC ACC TTC GCC TTC CAG CGC TGC CAT CAG CGG AGC CAC AAG AAC AAA CGA CGC ATC CTC ATC TAC CTG CTC CCA GTC AAA ATG CTC ATC GGC TAC ATC CCA AAG CAA TCA CTT CTG ATC AAG TAC AAC CTG AAA GAG TTT GTA GAC GTG GTG ACG GCC GTG CGT AAT GGC GAC ATC AGG CTC CTC AAC AAC ACG TTC CAG CGC TTC GAG CGC TTC TTC ATT GGT GCC GGC ATA TAC CTC ATC CTC GAG AAA CTC AAG TCC ATC GCG TAC AGA AAT CTT TTC AAA AAG ATC TAC GTG ATC AGA AAC AAC CAC CAA CTG GAC ATC GCA GTG TTT GTT CAG GCT CTT AAG TGG CTG AAG ATG GAG GAT GTG GAC GCC GAT GAG GCT GAG TGT CTC ATC GCC AAC ATG ATC TAC GAG GGG AAA GTT AAA GGT TAC ATC TCA CAC GCG CAC AAG AAG GTG GTC GTC AGT AAG AAG GAT GCC TTC CCT CCT CTT ACC CTC gam9 ATG GCA CAT AAT ATT AAC CTC AAT GAC TAC TTG AAC AGA GTT AAT GAT GCA CAC TAC AAT CAG GAT GGT GAT GCT GTG GCC GCG TTG CTA TCA TTT CGT CAA CCT CAT GTG ATG TCA CAC CGT CTC AAT GCT GAG AAG CCA GAT CGG GCC GTG TCC AAC ATC ATC TAT GCT CCA ATG GAT GAA GTT GTG TTG GCA CAT CTA AAG GTG GTG ATG TGG TAC CAC CGC GGC AAT GTG GTC GAG ATG TGG AAG GCC CAG TCC GCC GTG GTG ACA GCC GTG GCG CGT TTT ATG ACA AGC AGC AAA GAG GAG AAC TGG ATG TTG CCG CTC ATG AAC ACA GCG TGT CTG GAG TTA CGC CTT CAG AGC ATC TCG GCG GAC GTG GAA AGC GCC AAG ACT GGC AAC ACC AAG CCT TGT GAG CTG CTG GAG AAG ACA GCA GAG TCA CTG ATG GCC TGC TTC AGG GTG TGT GCT GCG GAC ACA CGT GCC AGC GAT AGT GAC ACC AAG CGG TGG GGT TTG CTC TAC CTT GTC AAC CAG TTC TTT AAA ATC TAT TTC AAA ATA AAC AAG CTC AAC TTG TGC AAG CCG ATG ATT CGT GCC ATT GAG TCC CTT GCC TTC AAG GAT CAG TAT CCT TTG TCG CAG CTC ATC ACC TAC AAG TAC TAC ACC GGC AGA AAG GCC ATG TTT GAC TCA GAC TTT AAA GGA GCC AAC ACT GCG CTC ACC TTC GCC TTC CAG CGT TGC CAT CAG CGC AGC CAC AAG AAC AAA CGA CGC ATT CTC ATC TAC CTG CTC CCG GTC AAA ATG CTC ATC GGC TAC ATC CCA AAG CAA TCA CTT CTG ATC AAG TAC AAC CTG AAG GAG TTT GTA GAC GTG GTG ACG GCC GTG CGT AAC GGC GAC ATC AGG CTG CTC AAC AAC ACG TTC CAG CGC TTT GAG CGC TTC TTC ATT GGT GCC GGC ATC TAC CTC ATC CTC GAG AAA CTC AAG TCC GTC GCG TAC AGA AAT CTT TTC AAA AAA ATC TAC GTG ATC AGA AAC AAC CAC CAA CTG GAC ATC GCA GTG TTT GTT CAG GCT CTG AAG TGG CTG AAG ATG GAG GAC GTA GAC GCC GAC GAG ACT GAG TGT CTC ATC GCC AAC ATG ATC AAC GAG GGG AAA GTT AAA GGC TAC ATC TCA CAC GCT CAC AAG AAG GTG GTC GTC AGT AAG AAG GAT GCC TTC CCT CCT CTT ACT CTC Printing out site pattern counts 9 555 P gam34.2 AAA AAA AAA AAA AAA AAC AAC AAC AAC AAC AAG AAG AAG AAG AAT AAT AAT AAT ACA ACA ACA ACA ACA ACC ACC ACC ACC ACG ACG ACT ACT ACT AGA AGA AGA AGA AGC AGC AGC AGC AGG AGG AGT AGT ATA ATC ATC ATC ATC ATC ATC ATC ATG ATG ATT ATT ATT CAA CAA CAA CAC CAG CAG CAG CAG CAG CAT CAT CAT CCA CCG CCG CCT CCT CGA CGC CGC CGC CGG CGT CGT CGT CTA CTA CTC CTC CTC CTC CTC CTG CTG CTG CTG CTT CTT CTT GAA GAA GAC GAC GAC GAG GAG GAG GAG GAG GAG GAT GAT GAT GAT GAT GAT GCA GCA GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCG GCG GCG GCG GCG GCG GCT GCT GCT GGA GGC GGC GGC GGC GGG GGT GTA GTC GTC GTG GTG GTG GTG GTG GTT GTT GTT TAC TAT TAT TCA TCA TCA TCA TCA TCC TCC TCG TCG TGC TGC TGC TGG TGT TGT TGT TTA TTC TTC TTC TTG TTG TTG TTG TTG TTT TTT TTT gam15.1 ... ... ... ... ... ... ... ... ... ... ... ... ... .C. ... ... ... .TG ... ... ... ... TT. ... ... ... ... ... T.. ..A ... ... .A. ... ... ..G ... ... ... GC. ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... A.. ... ... ..T GC. ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..A ... ... ... ... ... ... ... ... ... ... ..T ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... T.. ..A ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... A.. ... ... ... ... ... ... ... ... ... ... ... ... G.. ... ... ... ..G ... ... ... ... AC. ... ... ... ... ... ... ... ..A ... ..T ... ... ... ... ... ... ... ... gam23.1 ... ... ... ..G ..G ... ... ... GC. T.. ... ... ... ... ..C ... ... ... ... ... ..G ..T ..G ... ... ... ..G ... ... ..G ... T.A .AG .A. ... ..G ... ... ... ... ... ... ... ... ... ... ... ... ... ... C.. C.G ... TC. ..A ..C ... ... ... ..G ... ... ... ... .G. ... ..C ... ... ... ..A ..A ..C ... ... ... ... ..T ... ..G ... ... ... ... A.A ... ... ... ..T ... ... ... ... ..A ... ... ... .C. ... ... ..T ..A ..C ... ... ... ... ..A ..C ..C ..C ..C ... ... ... A.. ..A ... ... ... ... ... ... ..G ..T ..T ... ... ..A ... ... ... T.. ..A ... ... ... ... ... ... ..T ... ... ... ... ... A.. ..A ..C ... ... ..C ..G ... ... ..C ... G.. ... ... ..C ..G ... ... ... ... ... ... ..T ... G.. ..C ... ... ... ... ... C.A C.. C.. ... ... ..C ..C ... gam39.1 ... ... ..G ... ... ... ... ... ... ... ... ... ... ..T ... ... ... .C. ... ... ... ... ... ... ... ... ... ... ... ... ... ..C .A. ... ... ..G ... ... ... ... ... ... ... ... ... ..A ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... A.. ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..T ... ... ... ... ... ..T ... ..C ... ... ... ... ... ..C ... ... ..A ... ... ... ... ... ... ... ... T.. ... ... ... ... ... ... ... ..G ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... G.. ... ... ..G ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..C ... ... gam36.2 ... ..G ... ... ... ... ... ..T GC. T.. ..A ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... G.. ..A T.. .A. ... ... ... .A. ... ... ... ..A ... .A. ... ... ..A ..A ... ... ... ... ... ... ... ..A ... ... ... ... ... ... ... ..A ... ... ... ..C A.. ... ... ..A ... ..A ... ... ... ... ... ... ... ..C ... ... ..G ..A ... ... ..T ... ... ... ... ..T ... ... ... ... ... ... ... ..T ... ..C ..A ... ... ... ... ... ..C ... ... ... ... ... ... ... ... ..A ... ..G T.. TG. ..G ... ... A.. ... ... ... ... ... ... ... ... ... ... ... ... ..T ... ... ... ... A.. ... A.. ... ... ... ... ... ... ... ... ... ... G.. ... ... ..T ..G ..A ... ... ... ... ... ... ... G.. ... ... ... ... ... ... ..A ... ... C.. ... ... ... ... gam42.4 ... ... ... ... ..G ... ... ... GC. T.. ..A ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... G.. ..A T.. .A. ... ... ... G.. ... T.. ... ..A ... .A. ... ... ..A ..A ..A ... ... ... ... ... ... ..A ... ... ... .C. ... ... ... ... ... ... ... ... ... ... ... ..A ..A ..A ... ... ... ... ..T ... ... ..C ... ... ... ..A ... ... ... ... ..A ... ... ..T ... ... ... ... ... ... ... ..T ... ..C ..A ..A ... ... ... ... ..C ... ... ... ... ... A.. ... ... ... ... ..G T.. T.. ..G ... ... ... A.. ... ... ... ... ... ... ... ... ... ... ..T ..T ... ... ... ... ... ... A.. ... ... ... ... ... ... ... ... ... ... G.. ... ... ..T ..G ..A ..T ..A ... ... ... ... ... G.. ... ... ... ... ... ... ..A .C. ... C.C ... ... ... ... gam12.1 ... ..G ... ... ... ... ... ..T GC. T.. ..A ... ... ... ... ... ... ... ... ... ..T ... ... ... ... ..T ... ... ... G.. ..A T.. .A. ... ... ... .A. ... ... ... ..A ... .A. ... ... ..A ..A ... ... ... ... ... ... ... ..A ... ... ... ... ... ... A.. ..A ... ... ... ... ... ... ... ..A ... ..A ... ... ... ... ... ... ... ..C ... ... ... ..A ... ..T ..T ... ... ... ... ..T ... ... ... ... ... ... ... ..T ... ..C ..A ... ... ..A ... ... ..C ... ... ... ... ... ... ... ... ... ... ..G T.. A.. ..G ... ..T ... ... ... ... ... ... ... ... ... ... ... ... ... ..T ... ... ... ... A.. ... A.. ... ... ... ... ... ... ... ... ... ... G.. ... ... ..T ..G ..A ... ... ... ... ... ... ... G.. ... ... ... ... ... ... ..A ... ... C.. ... ... ... ... gam4.1 ... ..G ... ... ... ... ..T ..T GC. T.. ..A ..A ... ..A ... ... ... ... ... ..G ... ... ... ... ... ... ... ... ... G.. ..A T.. .A. ... ... ... .A. ... ... ... ..A ... .A. ... ... ..A ..A ... ... ... ... ... ... ... ... ... ... ... ... ... ... A.. ..A ... ... ... ... ... ... ... ..A ... ..A ... ... ... ..G ... ... ... ..C ... ... ..G ..A ... ... ..T ... ..A ..C ... ..T ... ..A ... ... ... ... ..T ..T ... ..C ..A ... ... ... ... ... ..C ... ... ... ... ... ... ... ... ... ... ..G T.. A.. ..G ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..T ... ... ... ... A.. ... A.. ... ... ... ... ... ... ... ... ... ... G.. ... ... ..T ..G ..A ... ... ... ... ... ... ... G.. ... ... ... ... ... ... ..A ... ... C.. ... ... ... ... gam9 ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..C ... ... ... ... ... ... ... ... ..T ... ... ... ... ... ... ... .A. ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..T ... ... ... ... ... ... ... ... ... ... ... A.. ... ... ... ... ... ... ... ... ... ... ..G ... ... ... ... ... ... ... ... ... ... ... G.. ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..T ... ... ... ... ... ... ... ..C ... ..C ... ... ... ... ... ... ... ... ... ..G ... ... ... ... ... T.. ... ... ... ..T .T. ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..A ... ... ... ... ... ... ... G.. ... ... ... ... ... ... ... ... .C. ... ... ... ... ... ... ... ... ... ..T ... ... ... ... ... ... ... ... 5 1 1 2 1 14 1 1 1 1 1 1 19 1 2 1 4 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1 1 1 1 1 1 2 11 1 2 1 13 1 1 1 2 1 1 1 7 1 1 7 1 1 1 1 2 3 1 1 1 5 1 4 1 1 2 2 1 4 1 1 1 13 1 1 1 1 1 8 1 1 1 4 1 1 9 1 1 2 1 1 1 10 1 1 1 1 1 1 4 3 1 1 1 1 1 9 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 2 1 4 1 1 1 1 3 1 1 4 1 1 1 1 14 1 1 2 14 1 2 1 1 3 1 1 1 1 1 1 1 2 1 5 1 1 2 1 1 10 1 1 1 1 1 3 1 2 4 CODONML (in paml version 4.8, March 2014) acantho.phy Model: several dN/dS ratios for branches for branches, Codon frequency model: F3x4 Site-class models: PositiveSelection ns = 9 ls = 398 Codon usage in sequences -------------------------------------------------------------------------------------------------------------------------------------- Phe TTT 7 8 4 6 7 7 | Ser TCT 0 0 0 0 2 3 | Tyr TAT 3 3 2 3 3 3 | Cys TGT 4 4 3 4 3 3 TTC 12 10 15 13 12 12 | TCC 2 3 3 3 2 2 | TAC 14 14 16 14 15 15 | TGC 4 3 4 4 5 5 Leu TTA 1 3 1 1 2 2 | TCA 7 5 5 5 5 6 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0 TTG 7 7 4 7 5 4 | TCG 2 4 5 3 3 3 | TAG 0 0 0 0 0 0 | Trp TGG 5 5 5 5 5 5 -------------------------------------------------------------------------------------------------------------------------------------- Leu CTT 6 6 6 6 8 7 | Pro CCT 6 6 5 6 5 5 | His CAT 4 5 3 4 2 4 | Arg CGT 7 7 6 7 6 7 CTC 17 17 17 17 15 17 | CCC 0 0 1 0 0 0 | CAC 7 7 8 7 8 7 | CGC 6 6 5 6 7 6 CTA 2 3 4 2 2 4 | CCA 3 3 5 3 5 7 | Gln CAA 3 3 2 3 4 2 | CGA 1 1 1 1 1 1 CTG 11 10 14 11 12 9 | CCG 2 2 0 2 1 0 | CAG 11 8 11 10 10 11 | CGG 2 2 5 2 2 2 -------------------------------------------------------------------------------------------------------------------------------------- Ile ATT 4 4 2 4 3 3 | Thr ACT 3 2 2 3 0 0 | Asn AAT 8 7 6 8 11 9 | Ser AGT 2 2 2 2 1 1 ATC 19 20 17 18 18 15 | ACC 6 7 6 7 7 7 | AAC 18 18 18 18 16 16 | AGC 6 5 6 6 5 4 ATA 1 1 3 2 4 6 | ACA 5 5 2 5 6 6 | Lys AAA 10 11 8 10 11 11 | Arg AGA 5 3 2 3 5 5 Met ATG 14 15 14 14 15 15 | ACG 2 2 6 2 2 3 | AAG 22 22 26 23 22 22 | AGG 2 3 3 3 1 1 -------------------------------------------------------------------------------------------------------------------------------------- Val GTT 4 4 2 4 4 4 | Ala GCT 5 5 5 4 6 6 | Asp GAT 9 10 5 10 9 9 | Gly GGT 3 3 5 3 5 6 GTC 5 4 7 5 4 5 | GCC 20 20 16 19 15 16 | GAC 11 10 15 11 12 12 | GGC 7 7 6 7 6 6 GTA 1 1 2 1 1 1 | GCA 4 6 10 5 6 5 | Glu GAA 2 2 4 2 3 4 | GGA 1 1 1 1 1 1 GTG 18 18 16 18 17 17 | GCG 8 8 7 9 10 9 | GAG 16 16 13 15 14 13 | GGG 1 1 1 1 1 1 -------------------------------------------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------- Phe TTT 7 7 8 | Ser TCT 2 2 0 | Tyr TAT 3 3 3 | Cys TGT 3 3 4 TTC 12 12 11 | TCC 2 2 4 | TAC 15 15 14 | TGC 4 4 3 Leu TTA 2 2 1 | TCA 5 5 6 | *** TAA 0 0 0 | *** TGA 0 0 0 TTG 5 5 7 | TCG 3 3 2 | TAG 0 0 0 | Trp TGG 5 5 5 -------------------------------------------------------------------------------------- Leu CTT 9 7 6 | Pro CCT 5 5 5 | His CAT 4 4 4 | Arg CGT 6 6 7 CTC 14 16 16 | CCC 0 0 0 | CAC 7 7 7 | CGC 7 6 6 CTA 3 4 2 | CCA 5 5 3 | Gln CAA 4 4 3 | CGA 1 1 1 CTG 11 10 11 | CCG 1 1 3 | CAG 9 9 10 | CGG 2 3 2 -------------------------------------------------------------------------------------- Ile ATT 3 4 5 | Thr ACT 2 0 4 | Asn AAT 10 11 7 | Ser AGT 1 1 2 ATC 18 18 18 | ACC 6 7 5 | AAC 16 15 19 | AGC 5 5 6 ATA 4 3 1 | ACA 5 5 5 | Lys AAA 11 13 11 | Arg AGA 5 5 4 Met ATG 15 15 14 | ACG 2 3 2 | AAG 23 21 23 | AGG 1 1 2 -------------------------------------------------------------------------------------- Val GTT 4 4 4 | Ala GCT 7 6 6 | Asp GAT 9 10 8 | Gly GGT 5 5 3 GTC 4 4 6 | GCC 16 17 18 | GAC 12 11 12 | GGC 6 6 7 GTA 1 1 2 | GCA 5 5 5 | Glu GAA 4 3 2 | GGA 1 1 1 GTG 17 17 18 | GCG 10 10 7 | GAG 13 14 16 | GGG 1 1 1 -------------------------------------------------------------------------------------- Codon position x base (3x4) table for each sequence. #1: gam34.2 position 1: T:0.17085 C:0.22111 A:0.31910 G:0.28894 position 2: T:0.32412 C:0.18844 A:0.34673 G:0.14070 position 3: T:0.18844 C:0.38693 A:0.11558 G:0.30905 Average T:0.22781 C:0.26549 A:0.26047 G:0.24623 #2: gam15.1 position 1: T:0.17337 C:0.21608 A:0.31910 G:0.29146 position 2: T:0.32915 C:0.19598 A:0.34171 G:0.13317 position 3: T:0.19095 C:0.37940 A:0.12060 G:0.30905 Average T:0.23116 C:0.26382 A:0.26047 G:0.24456 #3: gam23.1 position 1: T:0.16834 C:0.23367 A:0.30905 G:0.28894 position 2: T:0.32161 C:0.19598 A:0.34422 G:0.13819 position 3: T:0.14573 C:0.40201 A:0.12563 G:0.32663 Average T:0.21189 C:0.27722 A:0.25963 G:0.25126 #4: gam39.1 position 1: T:0.17085 C:0.21859 A:0.32161 G:0.28894 position 2: T:0.32412 C:0.19095 A:0.34673 G:0.13819 position 3: T:0.18593 C:0.38945 A:0.11055 G:0.31407 Average T:0.22697 C:0.26633 A:0.25963 G:0.24707 #5: gam36.2 position 1: T:0.17337 C:0.22111 A:0.31910 G:0.28643 position 2: T:0.32412 C:0.18844 A:0.35176 G:0.13568 position 3: T:0.18844 C:0.36935 A:0.14070 G:0.30151 Average T:0.22864 C:0.25963 A:0.27052 G:0.24121 #6: gam42.4 position 1: T:0.17588 C:0.22362 A:0.31156 G:0.28894 position 2: T:0.32161 C:0.19598 A:0.34673 G:0.13568 position 3: T:0.19347 C:0.36432 A:0.15327 G:0.28894 Average T:0.23032 C:0.26131 A:0.27052 G:0.23786 #7: gam12.1 position 1: T:0.17085 C:0.22111 A:0.31910 G:0.28894 position 2: T:0.32412 C:0.19095 A:0.35176 G:0.13317 position 3: T:0.20101 C:0.36181 A:0.14070 G:0.29648 Average T:0.23199 C:0.25796 A:0.27052 G:0.23953 #8: gam4.1 position 1: T:0.17085 C:0.22111 A:0.31910 G:0.28894 position 2: T:0.32412 C:0.19095 A:0.35176 G:0.13317 position 3: T:0.19598 C:0.36432 A:0.14322 G:0.29648 Average T:0.23032 C:0.25879 A:0.27136 G:0.23953 #9: gam9 position 1: T:0.17085 C:0.21608 A:0.32161 G:0.29146 position 2: T:0.32663 C:0.18844 A:0.34925 G:0.13568 position 3: T:0.19095 C:0.38191 A:0.11809 G:0.30905 Average T:0.22948 C:0.26214 A:0.26298 G:0.24539 Sums of codon usage counts ------------------------------------------------------------------------------ Phe F TTT 61 | Ser S TCT 9 | Tyr Y TAT 26 | Cys C TGT 31 TTC 109 | TCC 23 | TAC 132 | TGC 36 Leu L TTA 15 | TCA 49 | *** * TAA 0 | *** * TGA 0 TTG 51 | TCG 28 | TAG 0 | Trp W TGG 45 ------------------------------------------------------------------------------ Leu L CTT 61 | Pro P CCT 48 | His H CAT 34 | Arg R CGT 59 CTC 146 | CCC 1 | CAC 65 | CGC 55 CTA 26 | CCA 39 | Gln Q CAA 28 | CGA 9 CTG 99 | CCG 12 | CAG 89 | CGG 22 ------------------------------------------------------------------------------ Ile I ATT 32 | Thr T ACT 16 | Asn N AAT 77 | Ser S AGT 14 ATC 161 | ACC 58 | AAC 154 | AGC 48 ATA 25 | ACA 44 | Lys K AAA 96 | Arg R AGA 37 Met M ATG 131 | ACG 24 | AAG 204 | AGG 17 ------------------------------------------------------------------------------ Val V GTT 34 | Ala A GCT 50 | Asp D GAT 79 | Gly G GGT 38 GTC 44 | GCC 157 | GAC 106 | GGC 58 GTA 11 | GCA 51 | Glu E GAA 26 | GGA 9 GTG 156 | GCG 78 | GAG 130 | GGG 9 ------------------------------------------------------------------------------ Codon position x base (3x4) table, overall position 1: T:0.17169 C:0.22138 A:0.31770 G:0.28922 position 2: T:0.32440 C:0.19179 A:0.34785 G:0.13596 position 3: T:0.18677 C:0.37772 A:0.12982 G:0.30570 Average T:0.22762 C:0.26363 A:0.26512 G:0.24363 Codon frequencies under model, for use in evolver (TTT TTC TTA TTG ... GGG): 0.01071345 0.02166712 0.00744657 0.01753547 0.00633403 0.01281008 0.00440258 0.01036736 0.01148792 0.02323341 0.00000000 0.00000000 0.00449006 0.00908080 0.00000000 0.00734920 0.01381426 0.02793825 0.00960184 0.02261078 0.00816729 0.01651771 0.00567682 0.01336799 0.01481288 0.02995788 0.01029595 0.02424529 0.00578962 0.01170906 0.00402418 0.00947629 0.01982424 0.04009297 0.01377918 0.03244775 0.01172053 0.02370385 0.00814656 0.01918382 0.02125732 0.04299126 0.01477527 0.03479337 0.00830844 0.01680316 0.00577492 0.01359901 0.01804738 0.03649940 0.01254414 0.02953943 0.01067001 0.02157925 0.00741637 0.01746436 0.01935200 0.03913791 0.01345095 0.03167481 0.00756375 0.01529708 0.00525731 0.01238012 Nei & Gojobori 1986. dN/dS (dN, dS) (Note: This matrix is not used in later ML. analysis. Use runmode = -2 for ML pairwise comparison.) gam34.2 gam15.1 0.7817 (0.0208 0.0266) gam23.1 0.0944 (0.0236 0.2504) 0.1601 (0.0402 0.2513) gam39.1 0.1791 (0.0076 0.0424) 0.3922 (0.0197 0.0502) 0.1168 (0.0292 0.2505) gam36.2 0.1675 (0.0197 0.1174) 0.2541 (0.0331 0.1303) 0.0791 (0.0236 0.2987) 0.1726 (0.0241 0.1397) gam42.4 0.1685 (0.0219 0.1300) 0.2895 (0.0388 0.1341) 0.0839 (0.0242 0.2889) 0.1802 (0.0275 0.1526) 0.1700 (0.0120 0.0704) gam12.1 0.1385 (0.0175 0.1261) 0.2138 (0.0297 0.1391) 0.0705 (0.0214 0.3038) 0.1443 (0.0208 0.1440) 0.1770 (0.0054 0.0306) 0.1385 (0.0109 0.0786) gam4.1 0.1214 (0.0175 0.1439) 0.2010 (0.0297 0.1480) 0.0603 (0.0214 0.3552) 0.1281 (0.0208 0.1623) 0.1169 (0.0054 0.0463) 0.1142 (0.0109 0.0953)-1.0000 (0.0000 0.0624) gam9 0.1792 (0.0076 0.0424) 0.3226 (0.0175 0.0542) 0.0954 (0.0259 0.2713) 0.1229 (0.0087 0.0706) 0.1518 (0.0219 0.1442) 0.1608 (0.0253 0.1571) 0.1213 (0.0186 0.1531) 0.1083 (0.0186 0.1716) TREE # 1: ((((1, 2), (4, 9)), (((8, 5), 7), 6)), 3); MP score: 187 This is a rooted tree. Please check! check convergence.. lnL(ntime: 16 np: 21): -2645.458769 +0.000000 10..11 11..12 12..13 13..1 13..2 12..14 14..4 14..9 11..15 15..16 16..17 17..8 17..5 16..7 15..6 10..3 0.056013 0.044524 0.000004 0.015878 0.091344 0.001597 0.036524 0.036151 0.049238 0.016734 0.002383 0.028208 0.017856 0.014528 0.050869 0.138195 1.668686 0.878371 0.101681 0.019278 60.188577 Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site). tree length = 0.60004 ((((1: 0.015878, 2: 0.091344): 0.000004, (4: 0.036524, 9: 0.036151): 0.001597): 0.044524, (((8: 0.028208, 5: 0.017856): 0.002383, 7: 0.014528): 0.016734, 6: 0.050869): 0.049238): 0.056013, 3: 0.138195); ((((gam34.2: 0.015878, gam15.1: 0.091344): 0.000004, (gam39.1: 0.036524, gam9: 0.036151): 0.001597): 0.044524, (((gam4.1: 0.028208, gam36.2: 0.017856): 0.002383, gam12.1: 0.014528): 0.016734, gam42.4: 0.050869): 0.049238): 0.056013, gam23.1: 0.138195); Detailed output identifying parameters kappa (ts/tv) = 1.66869 dN/dS (w) for site classes (K=4) site class 0 1 2a 2b proportion 0.87837 0.10168 0.01788 0.00207 background w 0.01928 1.00000 0.01928 1.00000 foreground w 0.01928 1.00000 60.18858 60.18858 Naive Empirical Bayes (NEB) analysis (please use the BEB results.) Positive sites for foreground lineages Prob(w>1): 8 N 0.891 86 C 0.960* 90 T 0.997** 98 S 0.997** 243 Q 0.997** 285 T 0.807 299 F 0.769 Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118) Positive sites for foreground lineages Prob(w>1): 8 N 0.907 83 K 0.592 86 C 0.921 90 T 0.990** 98 S 0.995** 243 Q 0.994** 285 T 0.860 299 F 0.859 321 V 0.532 346 Q 0.529 The grid (see ternary graph for p0-p1) w0: 0.050 0.150 0.250 0.350 0.450 0.550 0.650 0.750 0.850 0.950 w2: 1.500 2.500 3.500 4.500 5.500 6.500 7.500 8.500 9.500 10.500 Posterior on the grid w0: 1.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 w2: 0.000 0.001 0.005 0.013 0.031 0.064 0.114 0.179 0.255 0.337 Posterior for p0-p1 (see the ternary graph) 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.011 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.007 0.011 0.897 0.073 sum of density on p0-p1 = 1.000000 Time used: 1:44