With this service you can check compatibility of adapters, i.e. find out whether there are pairs among entered adapters, whose indices differ by less than 3 bases (this is the check mode). In the addition mode you can find out what adapters are compatible with those you entered. |
Currently the service supports adapters from Truseq v1/v2/LT, Truseq HT, Truseq Small RNA, Nextera, NEBNext Multiplex Oligos for Illumina (single index sets 1-4 and dual index set 1), Ovation RRBS Methyl-Seq System 1-16 kits, NEXTflex DNA-Seq.
In the input form adapters from Truseq v1/v2/LT and single-index NEB are to be written as ADnumber, Truseq HT as Dnumber, Truseq Small RNA as RPInumber, Nextera as Nnumber or Snumber, dual-index NEB as inumber, Ovation RRBS as BCnumber, NEXTflex DNA-Seq as NFnumber. A list with all adapters which the service supports can be found here
Example of an entry:
For error reports and suggestions please write to firstname.lastname@example.org . The logo was made with the help of one of Duran pictures (vk.com/by_duran). The Russian version of ЧЕК can be found here.
|12 October 2017||Added single-index adapters from "NEXTflex DNA-Seq".|
|17 March 2017||Added single-index adapters from "NEBNext Multiplex Oligos for Illumina", sets 3 and 4. They are named AD17, AD24, AD26 and AD28-48. Adapters from "NEBNext Multiplex Oligos for Illumina", sets 1 and 2, have the same indices as adapters from Truseq v1/v2/LT, and therefore were not added.|
|10 October 2016||Added the list of updates|
|2 September 2016||Added adapters from Nextera v1 kit that are absent in Nextera v2 (N708, N709, S501, S504)|