tissue
iPS DF 6 9
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Bisulfite Seq
ChromatinAccessibility
H3K27ac
H3K27me3
H3K36me3
H3K4me1
H3K4me3
H3K9me3
mRNA Seq
UCSD
UW
UCSD
UCSD
UCSD
UCSD
UCSD
UCSD
UCSD
combined...
DS15164...
SK432...
SK275...
SK433...
SK400...
SK468...
SK397...
SK469...
SK398...
SK471...
SK274...
SK503...
mRNA Seq...
Bisulfite_Seq; UCSD; combined
ChromatinAccessibility; UW; DS15164
H3K27ac; UCSD; SK432
H3K27me3; UCSD; SK275
H3K27me3; UCSD; SK433
H3K36me3; UCSD; SK400
H3K36me3; UCSD; SK468
H3K4me1; UCSD; SK397
H3K4me1; UCSD; SK469
H3K4me3; UCSD; SK398
H3K4me3; UCSD; SK471
H3K9me3; UCSD; SK274
H3K9me3; UCSD; SK503
mRNA_Seq; UCSD; mRNA_Seq_ff_ips_6_9_r1
0.0391
1.37e-36
0.1660
≈0
0.1099
≈0
0.1543
≈0
0.2058
≈0
0.3723
≈0
0.1191
≈0
0.3037
≈0
0.0428
1.58e-27
0.2370
≈0
0.1179
≈0
0.2248
≈0
0.0359
2.08e-25
0.0391
1.37e-36
0.5312
≈0
0.4760
≈0
0.3231
≈0
0.3347
≈0
0.3424
≈0
0.6841
≈0
0.5299
≈0
0.6004
≈0
0.4886
≈0
0.2835
≈0
0.3124
≈0
0.0744
≈0
0.1660
≈0
0.5312
≈0
0.5200
≈0
0.5626
≈0
0.5493
≈0
0.5618
≈0
0.6637
≈0
0.6665
≈0
0.4385
≈0
0.6181
≈0
0.4334
≈0
0.6445
≈0
0.0946
≈0
0.1099
≈0
0.4760
≈0
0.5200
≈0
0.6376
≈0
0.4243
≈0
0.4847
≈0
0.5670
≈0
0.5876
≈0
0.4755
≈0
0.5664
≈0
0.3940
≈0
0.5667
≈0
0.0477
≈0
0.1543
≈0
0.3231
≈0
0.5626
≈0
0.6376
≈0
0.5091
≈0
0.5538
≈0
0.4976
≈0
0.5870
≈0
0.3468
≈0
0.5757
≈0
0.4357
≈0
0.6837
≈0
0.0633
≈0
0.2058
≈0
0.3347
≈0
0.5493
≈0
0.4243
≈0
0.5091
≈0
0.6453
≈0
0.4445
≈0
0.5170
≈0
0.3517
≈0
0.5270
≈0
0.4538
≈0
0.6299
≈0
0.2527
≈0
0.3723
≈0
0.3424
≈0
0.5618
≈0
0.4847
≈0
0.5538
≈0
0.6453
≈0
0.4490
≈0
0.6621
≈0
0.3950
≈0
0.6589
≈0
0.4703
≈0
0.6868
≈0
0.1413
≈0
0.1191
≈0
0.6841
≈0
0.6637
≈0
0.5670
≈0
0.4976
≈0
0.4445
≈0
0.4490
≈0
0.7494
≈0
0.4573
≈0
0.5338
≈0
0.3334
≈0
0.4900
≈0
0.0604
≈0
0.3037
≈0
0.5299
≈0
0.6665
≈0
0.5876
≈0
0.5870
≈0
0.5170
≈0
0.6621
≈0
0.7494
≈0
0.4371
≈0
0.6592
≈0
0.4189
≈0
0.6449
≈0
0.0612
≈0
0.0428
1.58e-27
0.6004
≈0
0.4385
≈0
0.4755
≈0
0.3468
≈0
0.3517
≈0
0.3950
≈0
0.4573
≈0
0.4371
≈0
0.5831
≈0
0.2852
≈0
0.3506
≈0
0.0836
≈0
0.2370
≈0
0.4886
≈0
0.6181
≈0
0.5664
≈0
0.5757
≈0
0.5270
≈0
0.6589
≈0
0.5338
≈0
0.6592
≈0
0.5831
≈0
0.4377
≈0
0.6531
≈0
0.0895
≈0
0.1179
≈0
0.2835
≈0
0.4334
≈0
0.3940
≈0
0.4357
≈0
0.4538
≈0
0.4703
≈0
0.3334
≈0
0.4189
≈0
0.2852
≈0
0.4377
≈0
0.6519
≈0
0.0345
1.07e-38
0.2248
≈0
0.3124
≈0
0.6445
≈0
0.5667
≈0
0.6837
≈0
0.6299
≈0
0.6868
≈0
0.4900
≈0
0.6449
≈0
0.3506
≈0
0.6531
≈0
0.6519
≈0
0.0642
≈0
0.0359
2.08e-25
0.0744
≈0
0.0946
≈0
0.0477
≈0
0.0633
≈0
0.2527
≈0
0.1413
≈0
0.0604
≈0
0.0612
≈0
0.0836
≈0
0.0895
≈0
0.0345
1.07e-38
0.0642
≈0
X
Color code
Background total
Foreground total
show chrom
show replicas
Statistics
Parameters
Statistics
Total
Chrom
Correlation
0.12
Observations
3061267
Correlation stDev
0.27
Bg Correlation
0.009
Bg Correlation stDev
0.12
P-value
1.2e-287
M-W statistics
-32
Parameters
Name
Value
step
100
strand
1
wSize
200000
wStep
200000
noiseLevel
0.0
flankSize
0
kernelSigma
2000
threshold
0;
kernelType
NORMAL
maxNA
99
maxZero
99
nShuffle
30
pVal
0
qVal
0
Rscrpit
1
Distances
DETAIL
OutChrom
1
chrom
cc
count
All
0.07
349088
chr1
0.07
349088
chr2
0.07
349088
chr3
0.07
349088
chr4
0.07
349088
chr5
0.07
349088
chr6
0.07
349088
chr7
0.07
349088
chr8
0.07
349088
chr9
0.07
349088
chr10
0.07
349088
chr11
0.07
349088
chr12
0.07
349088
chr13
0.07
349088
chr14
0.07
349088
chr15
0.07
349088
chr16
0.07
349088
chr17
0.07
349088
chr18
0.07
349088
chr19
0.07
349088
chr20
0.07
349088
chr21
0.07
349088
chr22
0.07
349088
chrX
0.07
349088
chrY
0.07
349088