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Bisulfite Seq

ChromatinAccessibility

Digital Genomic Footprinting

H2A

H2AK5ac

H2AK9ac

H2BK120ac

H2BK12ac

H2BK15ac

H2BK20ac

H2BK5ac

H3K14ac

H3K18ac

H3K23ac

H3K27ac

H3K27me3

H3K36me3

H3K4ac

H3K4me1

H3K4me2

H3K4me3

H3K56ac

H3K79me1

H3K79me2

H3K9ac

H3K9me1

H3K9me3

H4K20me1

H4K5ac

H4K8ac

H4K91ac

mRNA Seq

UCSD

UW

UW

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

UCSD

combined...

methylC ...

methylC ...

methylC ...

methylC ...

methylC ...

methylC ...

DS11759...

DS11764...

DS13219...

DS13229...

DGF; DS1...

Z; AY4...

Z; AY5...

YL20...

YL60...

AY6...

AY7...

SK15...

YL06...

YL138...

YL18...

YL68...

SK42...

YL19...

YL69...

SK14...

YL07...

LL229...

SK10...

YL281...

SK17...

YL15...

LL230...

SK09...

SK18...

YL09...

LL231...

LL235...

YL58...

LL223...

SK05...

LL225...

YL67...

LL239...

SK16...

LL222...

SK04...

SYL133...

LL232...

SK07...

LL221...

SK03...

YL05...

YL61...

SK11...

YL103...

YL145...

YL16...

LL238...

SK43...

LL233...

SK46...

LL237...

SK12...

LL224...

SK06...

YL104...

YL21...

YL59...

LL234...

SK08...

SK45...

YL142...

YL17...

YL57...

SK49...

YL08...

mRNA seq...

Bisulfite_Seq; UCSD; combined

Bisulfite_Seq; UCSD; methylC_seq_imr90_r1a

Bisulfite_Seq; UCSD; methylC_seq_imr90_r1b

Bisulfite_Seq; UCSD; methylC_seq_imr90_r1c

Bisulfite_Seq; UCSD; methylC_seq_imr90_r2a

Bisulfite_Seq; UCSD; methylC_seq_imr90_r2b

Bisulfite_Seq; UCSD; methylC_seq_imr90_r2c

ChromatinAccessibility; UW; DS11759

ChromatinAccessibility; UW; DS11764

ChromatinAccessibility; UW; DS13219

ChromatinAccessibility; UW; DS13229

Digital_Genomic_Footprinting; UW; DGF; DS13219

H2A; UCSD; Z; AY4

H2A; UCSD; Z; AY5

H2AK5ac; UCSD; YL20

H2AK5ac; UCSD; YL60

H2AK9ac; UCSD; AY6

H2AK9ac; UCSD; AY7

H2BK120ac; UCSD; SK15

H2BK120ac; UCSD; YL06

H2BK12ac; UCSD; YL138

H2BK12ac; UCSD; YL18

H2BK12ac; UCSD; YL68

H2BK15ac; UCSD; SK42

H2BK15ac; UCSD; YL19

H2BK15ac; UCSD; YL69

H2BK20ac; UCSD; SK14

H2BK20ac; UCSD; YL07

H2BK5ac; UCSD; LL229

H2BK5ac; UCSD; SK10

H2BK5ac; UCSD; YL281

H3K14ac; UCSD; SK17

H3K14ac; UCSD; YL15

H3K18ac; UCSD; LL230

H3K18ac; UCSD; SK09

H3K23ac; UCSD; SK18

H3K23ac; UCSD; YL09

H3K27ac; UCSD; LL231

H3K27ac; UCSD; LL235

H3K27ac; UCSD; YL58

H3K27me3; UCSD; LL223

H3K27me3; UCSD; SK05

H3K36me3; UCSD; LL225

H3K36me3; UCSD; YL67

H3K4ac; UCSD; LL239

H3K4ac; UCSD; SK16

H3K4me1; UCSD; LL222

H3K4me1; UCSD; SK04

H3K4me1; UCSD; SYL133

H3K4me2; UCSD; LL232

H3K4me2; UCSD; SK07

H3K4me3; UCSD; LL221

H3K4me3; UCSD; SK03

H3K56ac; UCSD; YL05

H3K56ac; UCSD; YL61

H3K79me1; UCSD; SK11

H3K79me1; UCSD; YL103

H3K79me1; UCSD; YL145

H3K79me1; UCSD; YL16

H3K79me2; UCSD; LL238

H3K79me2; UCSD; SK43

H3K9ac; UCSD; LL233

H3K9ac; UCSD; SK46

H3K9me1; UCSD; LL237

H3K9me1; UCSD; SK12

H3K9me3; UCSD; LL224

H3K9me3; UCSD; SK06

H3K9me3; UCSD; YL104

H4K20me1; UCSD; YL21

H4K20me1; UCSD; YL59

H4K5ac; UCSD; LL234

H4K5ac; UCSD; SK08

H4K8ac; UCSD; SK45

H4K8ac; UCSD; YL142

H4K8ac; UCSD; YL17

H4K8ac; UCSD; YL57

H4K91ac; UCSD; SK49

H4K91ac; UCSD; YL08

mRNA_Seq; UCSD; mRNA_seq_imr90_r1

-0.0006
1.31e-03

0.0190
6.07e-04

0.0219
1.69e-11

0.0252
1.10e-12

0.0018
6.59e-03

0.0393
5.23e-42

0.0257
1.31e-16

0.0310
5.61e-28

-0.0111
2.28e-08

0.0327
2.62e-37

0.0149
2.86e-07

-0.0044
2.15e-01

0.0040
8.01e-01

0.0308
1.35e-32

0.0274
4.98e-20

0.0339
3.87e-41

-0.0078
1.03e-02

0.0337
1.30e-35

0.0207
1.81e-09

0.0219
5.99e-17

0.0194
1.69e-05

0.0327
7.67e-25

0.0350
7.54e-32

0.0383
5.18e-34

0.0227
9.30e-08

0.0314
1.53e-22

0.0031
3.89e-01

0.0254
9.30e-19

0.0251
2.35e-27

0.0023
1.67e-02

0.0016
4.34e-02

0.0132
2.76e-07

0.0131
7.96e-06

0.0286
1.15e-18

0.0350
3.37e-18

0.0433
1.54e-41

0.0196
9.41e-04

0.0337
5.61e-22

0.0359
3.14e-28

0.0395
9.54e-32

0.0231
7.33e-07

0.0334
1.12e-42

0.0037
9.95e-01

0.0236
3.61e-16

0.0287
2.57e-32

0.0050
6.24e-03

0.0069
1.52e-02

0.0172
1.19e-09

0.0138
2.31e-05

0.0318
3.42e-32

0.0337
2.00e-17

0.0384
4.25e-28

0.0330
1.67e-32

0.0332
1.82e-28

0.0322
3.12e-39

0.0249
1.42e-21

0.0263
2.24e-25

0.0336
3.69e-27

0.0337
6.16e-28

0.0199
5.02e-13

0.0228
1.05e-21

-0.0012
1.62e-02

0.0197
5.43e-08

0.0316
2.48e-34

0.0447
3.05e-32

0.0181
6.60e-04

0.0208
2.50e-05

0.0357
2.23e-22

0.0376
6.37e-36

0.0240
2.70e-11

0.0353
1.62e-32

0.0037
8.65e-01

0.0259
1.63e-22

0.0331
5.22e-37

0.0070
4.19e-03

0.0100
4.30e-06

0.0196
2.68e-14

0.0144
1.58e-05

0.0344
4.56e-35

0.0359
1.77e-23

0.0205
3.98e-06

0.0348
1.85e-23

0.0368
9.77e-27

0.0406
3.59e-35

0.0237
1.71e-07

0.0334
1.67e-34

0.0031
4.60e-01

0.0257
4.38e-18

0.0291
4.33e-33

0.0040
9.73e-03

0.0051
3.33e-02

0.0158
1.53e-10

0.0140
7.01e-08

0.0313
8.61e-27

0.0367
1.41e-21

0.0333
1.36e-28

0.0321
8.02e-31

0.0290
9.33e-26

0.0053
8.28e-01

0.0282
1.47e-18

0.0445
6.48e-36

-0.0006
1.31e-03

0.0194
1.69e-05

0.0196
9.41e-04

0.0384
4.25e-28

0.0208
2.50e-05

0.0205
3.98e-06

0.0190
6.07e-04

0.0327
7.67e-25

0.0337
5.61e-22

0.0357
2.23e-22

0.0348
1.85e-23

0.0219
1.69e-11

0.0350
7.54e-32

0.0359
3.14e-28

0.0376
6.37e-36

0.0368
9.77e-27

0.0252
1.10e-12

0.0383
5.18e-34

0.0395
9.54e-32

0.0406
3.59e-35

0.0018
6.59e-03

0.0227
9.30e-08

0.0231
7.33e-07

0.0240
2.70e-11

0.0237
1.71e-07

0.0784
2.17e-42

0.0159
4.40e-01

0.0524
3.46e-36

0.0445
3.77e-21

0.0393
5.23e-42

-0.0118
6.59e-07

0.0267
6.48e-07

0.0289
1.10e-16

0.0227
8.20e-05

0.0564
4.13e-40

0.0349
3.11e-18

0.0395
3.83e-30

0.0447
9.18e-29

0.0257
1.31e-16

0.0501
2.41e-39

0.0206
1.15e-03

0.0310
5.61e-28

0.0314
1.53e-22

0.0334
1.12e-42

0.0330
1.67e-32

0.0353
1.62e-32

0.0334
1.67e-34

-0.0138
1.18e-21

0.0100
3.88e-01

0.0203
8.31e-05

-0.0111
2.28e-08

0.0031
3.89e-01

0.0037
9.95e-01

0.0332
1.82e-28

0.0037
8.65e-01

0.0031
4.60e-01

0.0333
1.36e-28

-0.0286
5.02e-32

-0.0157
6.00e-22

0.0244
1.33e-09

0.0451
1.14e-35

0.0461
1.92e-35

0.0378
9.97e-34

0.0327
2.62e-37

0.0005
3.05e-02

0.0463
2.73e-26

0.0354
4.66e-27

0.0149
2.86e-07

-0.0094
6.86e-10

0.0390
3.21e-20

0.0322
3.12e-39

0.0027
3.89e-08

0.0195
2.90e-01

0.0155
4.57e-04

0.0332
2.60e-24

0.0249
1.42e-21

0.0007
7.75e-05

0.0138
1.46e-01

0.0263
2.24e-25

0.0420
1.99e-11

0.0408
4.58e-19

0.0336
3.69e-27

0.0784
2.17e-42

0.0159
4.40e-01

0.0445
3.77e-21

-0.0118
6.59e-07

0.0227
8.20e-05

0.0349
3.11e-18

0.0395
3.83e-30

0.0447
9.18e-29

0.0501
2.41e-39

0.0206
1.15e-03

-0.0138
1.18e-21

0.0461
1.92e-35

0.0005
3.05e-02

0.0027
3.89e-08

0.0007
7.75e-05

0.0420
1.99e-11

0.0562
8.06e-33

-0.0140
7.39e-01

0.0226
1.93e-03

0.0444
5.93e-08

0.0694
3.65e-28

0.0219
1.45e-04

-0.0666
5.58e-28

-0.0551
7.76e-19

-0.0751
4.51e-36

-0.0207
3.05e-01

-0.0026
6.09e-01

0.0279
9.83e-07

0.0071
2.96e-01

0.0219
5.01e-04

0.0339
1.99e-07

0.0178
3.97e-01

0.0357
2.17e-22

0.0336
7.17e-11

-0.0044
2.15e-01

0.0254
9.30e-19

0.0236
3.61e-16

0.0337
6.16e-28

0.0259
1.63e-22

0.0257
4.38e-18

0.0524
3.46e-36

0.0267
6.48e-07

0.0564
4.13e-40

0.0100
3.88e-01

-0.0286
5.02e-32

0.0463
2.73e-26

0.0195
2.90e-01

0.0138
1.46e-01

0.0408
4.58e-19

-0.0173
1.11e-01

-0.0308
1.14e-01

0.0614
1.15e-40

-0.0340
9.66e-03

-0.0364
3.68e-03

-0.0432
1.35e-05

-0.0089
5.30e-02

0.0557
2.07e-43

-0.0035
7.64e-01

0.0437
1.15e-23

0.0495
5.82e-33

-0.0032
1.16e-02

0.0565
3.86e-37

0.0567
1.51e-42

0.0562
8.06e-33

-0.0173
1.11e-01

-0.0140
7.39e-01

-0.0308
1.14e-01

0.0226
1.93e-03

0.0614
1.15e-40

0.0414
6.49e-26

0.0455
2.72e-43

0.0444
5.93e-08

0.0440
8.58e-32

0.0251
2.35e-27

0.0287
2.57e-32

0.0199
5.02e-13

0.0331
5.22e-37

0.0291
4.33e-33

0.0321
8.02e-31

0.0547
1.18e-33

0.0040
8.01e-01

0.0023
1.67e-02

0.0050
6.24e-03

0.0228
1.05e-21

0.0070
4.19e-03

0.0040
9.73e-03

0.0290
9.33e-26

0.0694
3.65e-28

0.0340
3.16e-08

0.0308
1.35e-32

0.0016
4.34e-02

0.0069
1.52e-02

-0.0012
1.62e-02

0.0100
4.30e-06

0.0051
3.33e-02

0.0053
8.28e-01

0.0468
2.45e-43

0.0274
4.98e-20

0.0132
2.76e-07

0.0172
1.19e-09

0.0197
5.43e-08

0.0196
2.68e-14

0.0158
1.53e-10

0.0282
1.47e-18

0.0339
3.87e-41

-0.0078
1.03e-02

0.0131
7.96e-06

0.0138
2.31e-05

0.0144
1.58e-05

0.0140
7.01e-08

0.0219
1.45e-04

0.0389
2.19e-24

-0.0666
5.58e-28

-0.0340
9.66e-03

0.0321
3.28e-18

-0.0551
7.76e-19

-0.0364
3.68e-03

0.0388
2.63e-31

-0.0751
4.51e-36

-0.0432
1.35e-05

0.0331
1.79e-28

-0.0207
3.05e-01

-0.0089
5.30e-02

0.0557
2.07e-43

-0.0026
6.09e-01

-0.0035
7.64e-01

0.0337
1.30e-35

0.0286
1.15e-18

0.0318
3.42e-32

0.0316
2.48e-34

0.0344
4.56e-35

0.0313
8.61e-27

0.0054
5.12e-03

0.0390
6.72e-43

0.0279
9.83e-07

-0.0136
3.77e-15

0.0174
2.80e-02

0.0447
3.05e-32

0.0289
1.10e-16

0.0203
8.31e-05

-0.0157
6.00e-22

0.0451
1.14e-35

0.0378
9.97e-34

0.0354
4.66e-27

-0.0094
6.86e-10

0.0155
4.57e-04

0.0414
6.49e-26

0.0440
8.58e-32

0.0547
1.18e-33

0.0340
3.16e-08

0.0468
2.45e-43

0.0389
2.19e-24

0.0321
3.28e-18

0.0388
2.63e-31

0.0331
1.79e-28

0.0054
5.12e-03

-0.0136
3.77e-15

0.0429
9.34e-31

-0.0213
2.31e-24

0.0337
6.99e-18

0.0207
1.81e-09

0.0350
3.37e-18

0.0337
2.00e-17

0.0181
6.60e-04

0.0359
1.77e-23

0.0367
1.41e-21

0.0445
6.48e-36

0.0244
1.33e-09

0.0390
3.21e-20

0.0332
2.60e-24

0.0455
2.72e-43

0.0390
6.72e-43

0.0174
2.80e-02

0.0102
2.31e-01

0.0083
6.41e-01

0.0071
2.96e-01

0.0437
1.15e-23

0.0429
9.34e-31

0.0219
5.01e-04

0.0495
5.82e-33

0.0219
5.99e-17

0.0433
1.54e-41

-0.0032
1.16e-02

-0.0213
2.31e-24

0.0102
2.31e-01

0.0339
1.99e-07

0.0565
3.86e-37

0.0178
3.97e-01

0.0567
1.51e-42

0.0337
6.99e-18

0.0357
2.17e-22

0.0336
7.17e-11

0.0083
6.41e-01

X

Color code

Background total

Foreground total

show chrom

show replicas

Statistics
	Total	Chrom
Correlation	0.12
Observations	3061267
Correlation stDev	0.27
Bg Correlation	0.009
Bg Correlation stDev	0.12
P-value	1.2e-287
M-W statistics	-32

Parameters
Name	Value
step	100
strand	1
wSize	200000
wStep	200000
noiseLevel	0.0
flankSize	0
kernelSigma	2000
threshold	0;
kernelType	NORMAL
maxNA	99
maxZero	99
nShuffle	30
pVal	0
qVal	0
Rscrpit	1
Distances	DETAIL
OutChrom	1

chrom	cc	count
All	0.07	349088
chr1	0.07	349088
chr2	0.07	349088
chr3	0.07	349088
chr4	0.07	349088
chr5	0.07	349088
chr6	0.07	349088
chr7	0.07	349088
chr8	0.07	349088
chr9	0.07	349088
chr10	0.07	349088
chr11	0.07	349088
chr12	0.07	349088
chr13	0.07	349088
chr14	0.07	349088
chr15	0.07	349088
chr16	0.07	349088
chr17	0.07	349088
chr18	0.07	349088
chr19	0.07	349088
chr20	0.07	349088
chr21	0.07	349088
chr22	0.07	349088
chrX	0.07	349088
chrY	0.07	349088