tissue Fetal Brain

Return
to main
page

ChromatinAccessibility

Digital Genomic Footprinting

H3K27me3

H3K36me3

H3K4me1

H3K4me3

H3K9ac

H3K9me3

MRE Seq

MeDIP Seq

RRBS

mRNA Seq

smRNA Seq

UW

UW

BI

UCSF UBC

BI

UCSF UBC

BI

UCSF UBC

BI

UCSF UBC

UCSF UBC

BI

UCSF UBC

UCSF UBC

UCSF UBC

BI

UCSF UBC

UCSF UBC

H 22510;...

H 22510;...

H 22911;...

H 23266;...

H 23266;...

H 23284;...

H 23284;...

H 23399;...

H 23548;...

H 24279;...

H 24297;...

H 24381;...

H 24510;...

H 22510;...

UW H2267...

UW H 225...

HuFNSC01...

HuFNSC02...

HuFNSC T...

UW H 225...

HuFNSC01...

HuFNSC02...

UW H2267...

HuFNSC01...

HuFNSC02...

UW H 225...

HuFNSC01...

HuFNSC02...

HuFNSC T...

HuFNSC T...

UW H2267...

UW H 225...

HuFNSC01...

HuFNSC02...

H22510...

HuFNSC01...

HuFNSC02...

H22510...

H 23266...

H 23284...

HuFNSC01...

HuFNSC02...

H 22510...

H 23284...

HuFNSC01...

HuFNSC02...

HuFNSC01...

HuFNSC02...

ChromatinAccessibility; UW; H_22510; DS11872

ChromatinAccessibility; UW; H_22510; DS11877

ChromatinAccessibility; UW; H_22911; DS14464

ChromatinAccessibility; UW; H_23266; DS14717

ChromatinAccessibility; UW; H_23266; DS14718

ChromatinAccessibility; UW; H_23284; DS14803

ChromatinAccessibility; UW; H_23284; DS14815

ChromatinAccessibility; UW; H_23399; DS15453

ChromatinAccessibility; UW; H_23548; DS16302

ChromatinAccessibility; UW; H_24279; DS20221

ChromatinAccessibility; UW; H_24297; DS20226

ChromatinAccessibility; UW; H_24381; DS20231

ChromatinAccessibility; UW; H_24510; DNase; DS20780

Digital_Genomic_Footprinting; UW; H_22510; DGF; DS11872

H3K27me3; BI; UW_H22676

H3K27me3; BI; UW_H_22510

H3K27me3; UCSF_UBC; HuFNSC01

H3K27me3; UCSF_UBC; HuFNSC02

H3K27me3; UCSF_UBC; HuFNSC_T

H3K36me3; BI; UW_H_22510

H3K36me3; UCSF_UBC; HuFNSC01

H3K36me3; UCSF_UBC; HuFNSC02

H3K4me1; BI; UW_H22676

H3K4me1; UCSF_UBC; HuFNSC01

H3K4me1; UCSF_UBC; HuFNSC02

H3K4me3; BI; UW_H_22510

H3K4me3; UCSF_UBC; HuFNSC01

H3K4me3; UCSF_UBC; HuFNSC02

H3K4me3; UCSF_UBC; HuFNSC_T

H3K9ac; UCSF_UBC; HuFNSC_T

H3K9me3; BI; UW_H22676

H3K9me3; BI; UW_H_22510

H3K9me3; UCSF_UBC; HuFNSC01

H3K9me3; UCSF_UBC; HuFNSC02

MRE_Seq; UCSF_UBC; H22510

MRE_Seq; UCSF_UBC; HuFNSC01

MRE_Seq; UCSF_UBC; HuFNSC02

MeDIP_Seq; UCSF_UBC; H22510

MeDIP_Seq; UCSF_UBC; H_23266

MeDIP_Seq; UCSF_UBC; H_23284

MeDIP_Seq; UCSF_UBC; HuFNSC01

MeDIP_Seq; UCSF_UBC; HuFNSC02

RRBS; BI; H_22510

RRBS; BI; H_23284

mRNA_Seq; UCSF_UBC; HuFNSC01

mRNA_Seq; UCSF_UBC; HuFNSC02

smRNA_Seq; UCSF_UBC; HuFNSC01

smRNA_Seq; UCSF_UBC; HuFNSC02

0.0251
6.95e-03

0.0467
2.43e-26

0.0228
3.37e-11

-0.1236
1.74e-17

0.2215
4.72e-05

0.2371
2.15e-05

0.0175
6.94e-01

0.0423
2.28e-20

0.0426
2.93e-43

-0.0857
3.31e-14

0.2384
2.01e-05

0.2645
1.32e-05

0.0359
1.64e-08

0.0364
5.49e-27

-0.0933
3.40e-13

0.2534
8.10e-05

0.2794
6.99e-05

-0.0984
1.67e-11

0.2131
1.33e-03

0.2428
9.99e-04

-0.0821
4.51e-09

0.2496
1.12e-04

0.2721
1.37e-04

0.0458
4.47e-18

-0.0988
1.13e-14

0.2284
2.19e-05

0.2544
1.94e-05

0.0429
5.40e-13

0.0364
1.43e-29

-0.1037
8.44e-15

0.2200
5.08e-05

0.2471
3.46e-05

-0.1185
3.70e-14

0.2533
1.17e-04

0.2640
9.22e-05

-0.1347
1.23e-19

0.2199
7.10e-04

0.2108
7.87e-04

0.0475
5.40e-36

-0.0711
3.20e-09

0.2373
7.70e-06

0.2568
1.46e-05

0.0472
1.19e-16

0.0288
4.53e-14

-0.0865
1.39e-13

0.2425
9.66e-06

0.2453
1.59e-05

0.0581
8.40e-39

0.0448
9.85e-34

-0.0834
3.00e-12

0.2583
7.07e-06

0.2811
4.46e-06

0.0573
8.28e-29

0.0307
8.29e-16

-0.0928
1.95e-12

0.2470
9.16e-06

0.2630
1.36e-05

0.0269
6.59e-02

0.0494
1.74e-27

0.0285
2.40e-13

-0.0933
9.14e-15

0.2231
2.52e-05

0.2363
3.56e-05

0.0440
6.21e-33

0.0387
3.53e-18

0.0029
8.79e-02

0.0091
8.94e-01

0.0128
1.16e-02

0.0005
7.36e-05

-0.0087
3.20e-02

0.0466
3.56e-33

-0.0246
4.76e-29

0.0439
2.08e-01

0.0826
1.96e-01

-0.0229
3.31e-27

0.0074
7.18e-01

-0.0023
4.38e-19

-0.0466
3.11e-06

-0.0038
1.35e-03

-0.0330
2.53e-42

0.0201
2.13e-01

0.0602
7.65e-02

0.0251
6.95e-03

0.0175
6.94e-01

0.0359
1.64e-08

0.0458
4.47e-18

0.0429
5.40e-13

0.0472
1.19e-16

0.0581
8.40e-39

0.0573
8.28e-29

0.0269
6.59e-02

-0.0283
7.17e-05

-0.0403
1.64e-08

-0.0312
5.20e-04

0.0350
7.95e-05

0.0075
2.35e-06

0.0636
7.17e-39

-0.0335
4.26e-43

-0.0274
6.41e-38

-0.0240
2.12e-21

-0.0955
1.90e-09

0.0176
3.86e-03

-0.0044
1.95e-04

0.0637
5.91e-02

0.1009
2.98e-02

0.0467
2.43e-26

0.0423
2.28e-20

0.0494
1.74e-27

0.0237
2.08e-16

-0.0005
2.55e-02

0.0353
9.58e-24

0.0648
2.89e-38

0.0241
1.66e-12

0.0276
4.99e-14

0.0386
2.37e-28

0.0201
1.28e-05

-0.0559
3.32e-06

0.0413
2.17e-19

0.0174
2.32e-04

-0.0304
3.95e-38

0.1095
8.91e-03

0.1507
5.17e-03

-0.1023
2.00e-11

-0.0185
6.83e-21

-0.0102
3.88e-08

-0.0275
1.06e-42

-0.0385
5.11e-01

0.0046
6.49e-01

0.0228
3.37e-11

0.0426
2.93e-43

0.0364
5.49e-27

0.0364
1.43e-29

0.0475
5.40e-36

0.0288
4.53e-14

0.0448
9.85e-34

0.0307
8.29e-16

0.0285
2.40e-13

0.0440
6.21e-33

-0.0283
7.17e-05

0.0237
2.08e-16

0.0294
2.42e-12

0.0188
7.74e-02

0.0150
4.61e-03

0.0602
6.30e-40

-0.0127
1.44e-33

-0.0131
7.64e-26

-0.0017
7.94e-13

-0.0062
4.16e-23

0.1693
7.47e-08

-0.0415
3.40e-01

-0.0448
4.92e-01

-0.0229
3.31e-27

-0.0403
1.64e-08

-0.0005
2.55e-02

0.0227
2.10e-01

0.0440
2.66e-26

-0.0031
3.80e-14

0.2558
9.59e-14

0.0289
1.21e-03

0.0239
3.25e-02

-0.0103
4.94e-01

-0.0225
3.16e-01

0.0074
7.18e-01

-0.0312
5.20e-04

0.0353
9.58e-24

-0.0292
3.22e-40

0.0113
8.92e-03

0.0011
2.53e-11

0.0200
5.29e-01

-0.0047
3.60e-22

0.0143
8.75e-02

0.3110
1.04e-21

0.0563
1.21e-26

0.0529
7.81e-23

-0.0280
9.31e-02

-0.0307
1.37e-01

0.0350
7.95e-05

-0.0292
3.22e-40

-0.1020
6.08e-11

0.1205
5.56e-03

0.1233
5.84e-03

0.0075
2.35e-06

0.0648
2.89e-38

0.0113
8.92e-03

-0.1224
6.67e-15

0.0269
1.83e-15

0.0196
1.38e-07

0.0936
5.14e-02

0.0899
8.28e-02

0.0636
7.17e-39

0.0227
2.10e-01

0.0066
2.06e-02

0.0234
1.09e-04

0.0403
3.55e-25

0.0184
9.90e-02

-0.0441
1.88e-06

0.0905
7.35e-03

0.0957
7.13e-03

0.0440
2.66e-26

0.0073
4.98e-10

0.0172
1.87e-04

-0.1127
5.07e-16

-0.0172
4.92e-11

-0.0200
2.63e-20

0.1572
9.47e-04

0.1590
4.36e-03

0.0294
2.42e-12

0.0011
2.53e-11

0.0206
2.86e-04

-0.1138
6.09e-17

0.2235
1.15e-05

0.2158
1.25e-05

-0.0031
3.80e-14

0.0200
5.29e-01

0.0300
9.25e-17

-0.1171
1.40e-18

0.1866
4.74e-04

0.1785
5.67e-04

0.0188
7.74e-02

-0.0047
3.60e-22

-0.0113
4.49e-24

0.0339
3.83e-13

0.0255
6.33e-06

0.0396
2.71e-20

0.0388
4.37e-18

-0.0109
1.60e-04

0.2373
2.03e-06

0.2362
1.06e-05

0.0143
8.75e-02

0.0565
1.12e-36

0.0457
1.82e-29

0.0494
7.97e-01

0.1264
4.42e-03

0.1270
6.16e-03

0.0387
3.53e-18

-0.0023
4.38e-19

0.0206
2.86e-04

0.0300
9.25e-17

-0.0113
4.49e-24

0.0011
6.18e-02

0.0047
5.72e-01

0.0038
4.24e-02

0.0909
6.43e-02

-0.0034
5.46e-06

0.0005
1.91e-05

0.0031
8.76e-04

-0.0027
3.22e-06

0.1306
1.24e-03

0.1278
2.87e-03

-0.0500
1.34e-07

0.1268
6.11e-04

0.1226
3.41e-03

0.0150
4.61e-03

0.0073
4.98e-10

0.0263
3.81e-06

0.0277
3.18e-07

0.0185
2.15e-02

0.0312
5.13e-11

-0.0039
3.79e-03

-0.0168
1.86e-36

0.0990
6.30e-02

0.0870
9.57e-02

0.0602
6.30e-40

0.0172
1.87e-04

0.0141
1.85e-01

0.0155
1.08e-01

0.0073
5.78e-01

0.0189
7.79e-04

0.0027
9.39e-03

-0.0149
7.48e-23

0.0487
6.26e-01

0.0420
7.83e-01

0.0011
6.18e-02

-0.0036
1.45e-05

-0.0050
2.39e-06

0.0054
4.84e-01

0.0039
7.09e-02

-0.1343
3.04e-14

0.2369
4.49e-06

0.2528
1.91e-06

0.0047
5.72e-01

-0.0142
6.32e-22

-0.0156
5.62e-28

-0.1466
4.31e-16

0.2543
3.07e-07

0.2640
1.19e-07

0.0038
4.24e-02

-0.0189
6.28e-31

-0.0204
2.18e-38

-0.1328
1.24e-14

0.2451
3.03e-07

0.2617
1.15e-07

0.0029
8.79e-02

-0.0335
4.26e-43

0.0241
1.66e-12

-0.0127
1.44e-33

0.0066
2.06e-02

0.0339
3.83e-13

0.0565
1.12e-36

0.0263
3.81e-06

0.0141
1.85e-01

-0.0036
1.45e-05

-0.0031
5.67e-02

-0.0401
1.92e-02

0.0091
8.94e-01

-0.0274
6.41e-38

0.0276
4.99e-14

-0.0131
7.64e-26

0.0234
1.09e-04

0.0255
6.33e-06

0.0457
1.82e-29

0.0277
3.18e-07

0.0155
1.08e-01

-0.0050
2.39e-06

0.0062
8.50e-02

-0.0288
3.08e-02

0.0128
1.16e-02

-0.0240
2.12e-21

0.0386
2.37e-28

-0.0017
7.94e-13

0.0403
3.55e-25

0.0396
2.71e-20

0.0185
2.15e-02

0.0073
5.78e-01

0.0054
4.84e-01

-0.0142
6.32e-22

-0.0189
6.28e-31

-0.0004
1.11e-01

-0.0266
5.21e-02

0.0005
7.36e-05

0.0201
1.28e-05

-0.0062
4.16e-23

0.0184
9.90e-02

0.0388
4.37e-18

0.0312
5.13e-11

0.0189
7.79e-04

0.0039
7.09e-02

-0.0156
5.62e-28

-0.0204
2.18e-38

0.0178
1.48e-01

-0.0172
7.11e-02

-0.1236
1.74e-17

-0.0857
3.31e-14

-0.0933
3.40e-13

-0.0984
1.67e-11

-0.0821
4.51e-09

-0.0988
1.13e-14

-0.1037
8.44e-15

-0.1185
3.70e-14

-0.1347
1.23e-19

-0.0711
3.20e-09

-0.0865
1.39e-13

-0.0834
3.00e-12

-0.0928
1.95e-12

-0.0933
9.14e-15

-0.0087
3.20e-02

-0.0466
3.11e-06

-0.0955
1.90e-09

-0.0559
3.32e-06

-0.1023
2.00e-11

0.1693
7.47e-08

0.2558
9.59e-14

0.3110
1.04e-21

-0.1020
6.08e-11

-0.1224
6.67e-15

-0.0441
1.88e-06

-0.1127
5.07e-16

-0.1138
6.09e-17

-0.1171
1.40e-18

-0.0109
1.60e-04

0.0494
7.97e-01

0.0909
6.43e-02

-0.0500
1.34e-07

-0.0039
3.79e-03

0.0027
9.39e-03

-0.1343
3.04e-14

-0.1466
4.31e-16

-0.1328
1.24e-14

0.2960
4.96e-31

0.3641
2.49e-41

0.1968
1.67e-16

0.1645
7.72e-15

0.0176
3.86e-03

0.0413
2.17e-19

-0.0185
6.83e-21

0.0289
1.21e-03

0.0563
1.21e-26

0.0269
1.83e-15

-0.0172
4.92e-11

-0.0034
5.46e-06

0.2960
4.96e-31

0.0466
3.56e-33

-0.0044
1.95e-04

0.0174
2.32e-04

0.0239
3.25e-02

0.0529
7.81e-23

0.0196
1.38e-07

-0.0200
2.63e-20

0.0005
1.91e-05

0.3641
2.49e-41

-0.0246
4.76e-29

-0.0038
1.35e-03

-0.0304
3.95e-38

-0.0102
3.88e-08

0.0031
8.76e-04

0.1968
1.67e-16

-0.0371
1.34e-02

-0.0326
3.75e-02

-0.0330
2.53e-42

-0.0275
1.06e-42

-0.0027
3.22e-06

-0.0168
1.86e-36

-0.0149
7.48e-23

0.1645
7.72e-15

-0.0346
1.00e-02

-0.0262
5.94e-02

0.2215
4.72e-05

0.2384
2.01e-05

0.2534
8.10e-05

0.2131
1.33e-03

0.2496
1.12e-04

0.2284
2.19e-05

0.2200
5.08e-05

0.2533
1.17e-04

0.2199
7.10e-04

0.2373
7.70e-06

0.2425
9.66e-06

0.2583
7.07e-06

0.2470
9.16e-06

0.2231
2.52e-05

0.0439
2.08e-01

0.0201
2.13e-01

0.0637
5.91e-02

0.1095
8.91e-03

-0.0385
5.11e-01

-0.0415
3.40e-01

-0.0103
4.94e-01

-0.0280
9.31e-02

0.1205
5.56e-03

0.0936
5.14e-02

0.0905
7.35e-03

0.1572
9.47e-04

0.2235
1.15e-05

0.1866
4.74e-04

0.2373
2.03e-06

0.1264
4.42e-03

0.1306
1.24e-03

0.1268
6.11e-04

0.0990
6.30e-02

0.0487
6.26e-01

0.2369
4.49e-06

0.2543
3.07e-07

0.2451
3.03e-07

-0.0031
5.67e-02

0.0062
8.50e-02

-0.0004
1.11e-01

0.0178
1.48e-01

-0.0371
1.34e-02

-0.0346
1.00e-02

0.2371
2.15e-05

0.2645
1.32e-05

0.2794
6.99e-05

0.2428
9.99e-04

0.2721
1.37e-04

0.2544
1.94e-05

0.2471
3.46e-05

0.2640
9.22e-05

0.2108
7.87e-04

0.2568
1.46e-05

0.2453
1.59e-05

0.2811
4.46e-06

0.2630
1.36e-05

0.2363
3.56e-05

0.0826
1.96e-01

0.0602
7.65e-02

0.1009
2.98e-02

0.1507
5.17e-03

0.0046
6.49e-01

-0.0448
4.92e-01

-0.0225
3.16e-01

-0.0307
1.37e-01

0.1233
5.84e-03

0.0899
8.28e-02

0.0957
7.13e-03

0.1590
4.36e-03

0.2158
1.25e-05

0.1785
5.67e-04

0.2362
1.06e-05

0.1270
6.16e-03

0.1278
2.87e-03

0.1226
3.41e-03

0.0870
9.57e-02

0.0420
7.83e-01

0.2528
1.91e-06

0.2640
1.19e-07

0.2617
1.15e-07

-0.0401
1.92e-02

-0.0288
3.08e-02

-0.0266
5.21e-02

-0.0172
7.11e-02

-0.0326
3.75e-02

-0.0262
5.94e-02

X

Color code

Background total

Foreground total

show chrom

show replicas

Statistics
	Total	Chrom
Correlation	0.12
Observations	3061267
Correlation stDev	0.27
Bg Correlation	0.009
Bg Correlation stDev	0.12
P-value	1.2e-287
M-W statistics	-32

Parameters
Name	Value
step	100
strand	1
wSize	200000
wStep	200000
noiseLevel	0.0
flankSize	0
kernelSigma	2000
threshold	0;
kernelType	NORMAL
maxNA	99
maxZero	99
nShuffle	30
pVal	0
qVal	0
Rscrpit	1
Distances	DETAIL
OutChrom	1

chrom	cc	count
All	0.07	349088
chr1	0.07	349088
chr2	0.07	349088
chr3	0.07	349088
chr4	0.07	349088
chr5	0.07	349088
chr6	0.07	349088
chr7	0.07	349088
chr8	0.07	349088
chr9	0.07	349088
chr10	0.07	349088
chr11	0.07	349088
chr12	0.07	349088
chr13	0.07	349088
chr14	0.07	349088
chr15	0.07	349088
chr16	0.07	349088
chr17	0.07	349088
chr18	0.07	349088
chr19	0.07	349088
chr20	0.07	349088
chr21	0.07	349088
chr22	0.07	349088
chrX	0.07	349088
chrY	0.07	349088