feature smRNA Seq

Return to main page Brain Germinal Matrix Bre­ast Lum­ina­l Epi­the­lia­l Cel­ls Bre­ast Myo­epi­the­lia­l Cel­ls Bre­ast Ste­m Cel­ls Bre­ast vHM­EC CD4 Mem­ory Pri­mar­y Cel­ls CD8 Nai­ve Pri­mar­y Cel­ls Fetal Brain H1 Neurosphere Cultured Cells Cortex Derived Neurosphere Cultured Cells Ganglionic Eminence Derived Penis Foresk­in Fibrob­last Primar­y Cells Penis Foreskin Keratinoc­yte Primary Cells Penis Foreskin Melanocyt­e Primary Cells Periph­eral Blood Mononu­clear Primar­y Cells Pla­cen­ta Amn­ion Pla­cen­ta Bas­al Pla­te Placenta Chorion Smooth Placen­ta Tropho­blast Primar­y Cells Placenta Villi UCSF 4star UCSF UBC UCS­F UBC UCS­F UBC UCS­F UBC UCS­F UBC UCS­F UBC UCS­F UBC UCSF UBC UCS­F UBC UCSF UBC UCSF UBC UCSF UBC UCSF UBC UCSF UBC UCSF UBC UCS­F UBC UCS­F UBC UCSF UBC UCSF UBC UCSF UBC UCSF UBC HuF­GM0­1..­. HuF­GM0­2..­. HuF­GM0­2;.­.. RM0­80.­.. RM0­80.­.. RM0­80.­.. RM0­35.­.. TC0­14.­.. TC0­14.­.. HuF­NSC­01.­.. HuF­NSC­02.­.. H1E­Scd­1 ... HuF­NSC­01.­.. HuF­NSC­02.­.. HuF­NSC­03.­.. HuF­NSC­04.­.. HuF­NSC­01.­.. HuF­NSC­02.­.. HuF­NSC­03.­.. HuF­NSC­04.­.. HuF­NSC­04.­.. ski­n01­... ski­n03­... ski­n01­... ski­n02­... ski­n03­... ski­n01­... ski­n02­... ski­n03­... TC0­14.­.. TC0­17.­.. CTL­02.­.. CTL­04.­.. CTL­02.­.. CTL­03.­.. CTL­04.­.. CTL­04.­.. CTL­05.­.. CTL­02.­.. CTL­03.­.. CTL­04.­.. m05­795­... m05­796­... Brain_Germinal_Matrix; UCSF_UBC; HuFGM01 Brain_Germinal_Matrix; UCSF_UBC; HuFGM02 Brain_Germinal_Matrix; UCSF_UBC; HuFGM02; m09072 Breast_Luminal_Epithelial_Cells; UCSF_UBC; RM080 Breast_Myoepithelial_Cells; UCSF_UBC; RM080 Breast_Stem_Cells; UCSF_UBC; RM080 Breast_vHMEC; UCSF_UBC; RM035 CD4_Memory_Primary_Cells; UCSF_UBC; TC014 CD8_Naive_Primary_Cells; UCSF_UBC; TC014 Fetal_Brain; UCSF_UBC; HuFNSC01 Fetal_Brain; UCSF_UBC; HuFNSC02 H1; UCSF_UBC; H1EScd1_batch2_vial1 Neurosphere_Cultured_Cells_Cortex_Derived; UCSF_UBC; HuFNSC01 Neurosphere_Cultured_Cells_Cortex_Derived; UCSF_UBC; HuFNSC02 Neurosphere_Cultured_Cells_Cortex_Derived; UCSF_UBC; HuFNSC03 Neurosphere_Cultured_Cells_Cortex_Derived; UCSF_UBC; HuFNSC04 Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived; UCSF_UBC; HuFNSC01 Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived; UCSF_UBC; HuFNSC02 Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived; UCSF_UBC; HuFNSC03 Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived; UCSF_UBC; HuFNSC04; m05802 Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived; UCSF_UBC; HuFNSC04; m09087 Penis_Foreskin_Fibroblast_Primary_Cells; UCSF_UBC; skin01 Penis_Foreskin_Fibroblast_Primary_Cells; UCSF_UBC; skin03 Penis_Foreskin_Keratinocyte_Primary_Cells; UCSF_UBC; skin01 Penis_Foreskin_Keratinocyte_Primary_Cells; UCSF_UBC; skin02 Penis_Foreskin_Keratinocyte_Primary_Cells; UCSF_UBC; skin03 Penis_Foreskin_Melanocyte_Primary_Cells; UCSF_UBC; skin01 Penis_Foreskin_Melanocyte_Primary_Cells; UCSF_UBC; skin02 Penis_Foreskin_Melanocyte_Primary_Cells; UCSF_UBC; skin03 Peripheral_Blood_Mononuclear_Primary_Cells; UCSF_UBC; TC014 Peripheral_Blood_Mononuclear_Primary_Cells; UCSF_UBC; TC017 Placenta_Amnion; UCSF_UBC; CTL02 Placenta_Basal_Plate; UCSF_UBC; CTL04 Placenta_Chorion_Smooth; UCSF_UBC; CTL02 Placenta_Chorion_Smooth; UCSF_UBC; CTL03 Placenta_Chorion_Smooth; UCSF_UBC; CTL04 Placenta_Trophoblast_Primary_Cells; UCSF_UBC; CTL04 Placenta_Trophoblast_Primary_Cells; UCSF_UBC; CTL05 Placenta_Villi; UCSF_UBC; CTL02 Placenta_Villi; UCSF_UBC; CTL03 Placenta_Villi; UCSF_UBC; CTL04 UCSF_4star; UCSF_UBC; m05795 UCSF_4star; UCSF_UBC; m05796 0.5457 ≈0 0.5542 ≈0 0.5958 ≈0 0.4188 ≈0 0.4065 ≈0 0.3391 ≈0 0.4355 ≈0 0.6708 ≈0 0.6964 ≈0 0.7284 ≈0 0.5093 ≈0 0.5211 ≈0 0.4361 ≈0 0.5554 ≈0 0.7978 4.77e-17 0.5917 1.45e-15 0.5457 ≈0 0.6708 ≈0 0.7671 ≈0 0.7666 ≈0 0.6361 ≈0 0.5828 ≈0 0.5813 ≈0 0.3459 ≈0 0.6177 ≈0 0.5542 ≈0 0.6964 ≈0 0.7978 4.77e-17 0.7671 ≈0 0.7826 ≈0 0.5836 ≈0 0.5171 ≈0 0.5189 ≈0 0.2498 ≈0 0.7887 1.26e-10 0.8467 2.72e-11 0.7231 7.02e-08 0.8342 2.68e-11 0.7118 3.24e-05 0.7788 2.62e-07 0.8086 3.89e-13 0.7428 1.61e-16 0.8103 1.46e-12 0.7886 1.13e-17 0.6171 3.91e-17 0.7884 3.36e-13 0.6671 4.25e-33 0.7658 4.89e-12 0.7850 8.17e-12 0.5416 ≈0 0.7732 6.67e-10 0.7821 1.35e-13 0.8154 8.77e-16 0.8063 1.51e-15 0.8097 3.34e-18 0.8097 8.35e-16 0.7980 1.57e-12 0.7634 1.71e-14 0.7366 1.00e-14 0.7862 4.82e-15 0.7182 5.50e-18 0.7972 1.74e-19 0.7618 1.91e-22 0.5958 ≈0 0.7284 ≈0 0.7666 ≈0 0.7826 ≈0 0.5931 ≈0 0.4914 ≈0 0.4909 ≈0 0.2830 ≈0 0.6846 8.87e-08 0.6881 3.48e-05 0.7345 2.87e-07 0.7388 5.79e-13 0.7785 1.72e-12 0.7741 2.83e-18 0.5996 7.88e-15 0.7588 3.88e-13 0.6400 1.20e-32 0.6989 8.19e-13 0.7008 1.43e-11 0.5251 ≈0 0.7044 7.50e-10 0.7359 1.90e-13 0.7871 4.78e-15 0.7870 1.34e-17 0.7775 7.35e-12 0.7006 8.28e-13 0.7369 7.44e-15 0.6745 1.67e-18 0.7490 3.34e-19 0.7337 2.72e-22 0.6361 ≈0 0.5836 ≈0 0.5931 ≈0 0.5453 ≈0 0.5294 ≈0 0.5378 ≈0 0.5615 ≈0 0.4188 ≈0 0.5093 ≈0 0.5828 ≈0 0.5171 ≈0 0.4914 ≈0 0.5453 ≈0 0.8035 ≈0 0.2575 ≈0 0.7464 5.85e-08 0.7964 2.75e-07 0.8019 1.50e-12 0.6189 1.15e-14 0.7704 8.62e-12 0.6591 2.70e-30 0.8013 5.12e-11 0.7820 ≈0 0.7522 4.48e-09 0.6928 9.25e-10 0.6030 5.19e-14 0.7309 4.73e-18 0.6817 7.28e-20 0.4065 ≈0 0.5211 ≈0 0.5813 ≈0 0.5189 ≈0 0.4909 ≈0 0.5294 ≈0 0.8035 ≈0 0.2411 ≈0 0.7022 1.42e-06 0.7149 3.21e-05 0.7389 6.10e-06 0.7708 4.08e-11 0.7864 2.96e-17 0.5687 1.15e-11 0.6940 4.53e-09 0.6375 6.59e-33 0.7408 5.09e-12 0.6977 5.66e-11 0.7763 ≈0 0.6551 8.48e-08 0.6833 7.49e-15 0.6616 8.06e-13 0.6703 2.54e-10 0.6161 3.74e-10 0.6405 3.92e-11 0.5594 1.62e-13 0.6713 1.24e-16 0.6316 4.11e-18 0.5159 1.27e-11 0.6000 5.43e-11 0.3391 ≈0 0.4361 ≈0 0.5917 1.45e-15 0.3459 ≈0 0.2498 ≈0 0.2830 ≈0 0.5378 ≈0 0.2575 ≈0 0.2411 ≈0 0.5159 1.27e-11 0.6000 5.43e-11 0.6342 3.66e-10 0.6278 8.60e-11 0.5966 3.05e-14 0.6168 1.20e-07 0.6014 1.02e-10 0.6218 2.09e-11 0.6964 2.63e-05 0.7082 3.32e-07 0.6333 8.12e-13 0.6211 1.77e-17 0.6594 3.08e-12 0.6513 5.07e-18 0.4614 8.20e-14 0.6054 1.13e-12 0.4832 1.49e-27 0.5633 4.19e-13 0.5728 3.33e-11 0.2520 ≈0 0.6346 8.70e-10 0.5456 7.44e-13 0.5252 2.59e-13 0.5613 1.27e-12 0.6025 8.66e-17 0.5426 5.62e-14 0.5717 1.08e-11 0.5536 1.66e-13 0.5127 1.21e-13 0.5817 2.62e-15 0.5167 5.91e-17 0.6484 2.36e-19 0.6540 1.51e-22 0.7887 1.26e-10 0.6342 3.66e-10 0.8467 2.72e-11 0.6278 8.60e-11 0.8916 2.34e-11 0.5966 3.05e-14 0.7231 7.02e-08 0.6846 8.87e-08 0.7464 5.85e-08 0.7022 1.42e-06 0.6168 1.20e-07 0.7998 5.49e-08 0.8342 2.68e-11 0.6014 1.02e-10 0.6218 2.09e-11 0.7118 3.24e-05 0.6881 3.48e-05 0.7149 3.21e-05 0.6964 2.63e-05 0.7788 2.62e-07 0.7345 2.87e-07 0.7964 2.75e-07 0.7389 6.10e-06 0.7082 3.32e-07 0.8519 2.22e-07 0.8086 3.89e-13 0.7388 5.79e-13 0.6333 8.12e-13 0.7428 1.61e-16 0.6211 1.77e-17 0.8682 1.68e-18 0.8103 1.46e-12 0.7785 1.72e-12 0.8019 1.50e-12 0.7708 4.08e-11 0.6594 3.08e-12 0.8324 1.28e-12 0.7886 1.13e-17 0.7741 2.83e-18 0.7864 2.96e-17 0.6513 5.07e-18 0.6171 3.91e-17 0.5996 7.88e-15 0.6189 1.15e-14 0.5687 1.15e-11 0.4614 8.20e-14 0.6226 8.27e-16 0.7884 3.36e-13 0.7588 3.88e-13 0.7704 8.62e-12 0.6940 4.53e-09 0.6054 1.13e-12 0.7191 9.03e-11 0.6671 4.25e-33 0.6400 1.20e-32 0.6591 2.70e-30 0.6375 6.59e-33 0.4832 1.49e-27 0.6941 1.14e-33 0.7658 4.89e-12 0.6989 8.19e-13 0.7408 5.09e-12 0.5633 4.19e-13 0.8404 3.75e-13 0.7850 8.17e-12 0.7008 1.43e-11 0.8013 5.12e-11 0.6977 5.66e-11 0.5728 3.33e-11 0.8240 3.31e-11 0.4355 ≈0 0.5554 ≈0 0.6177 ≈0 0.5416 ≈0 0.5251 ≈0 0.5615 ≈0 0.7820 ≈0 0.7763 ≈0 0.2520 ≈0 0.8916 2.34e-11 0.7998 5.49e-08 0.8519 2.22e-07 0.8682 1.68e-18 0.8324 1.28e-12 0.6226 8.27e-16 0.7191 9.03e-11 0.6941 1.14e-33 0.8404 3.75e-13 0.8240 3.31e-11 0.7837 3.17e-09 0.7877 1.92e-14 0.8341 1.51e-14 0.8097 5.35e-17 0.7965 1.96e-14 0.7880 3.57e-11 0.8249 1.78e-14 0.7097 8.36e-13 0.6694 3.10e-15 0.7694 6.35e-19 0.7290 1.80e-21 0.7732 6.67e-10 0.7044 7.50e-10 0.7522 4.48e-09 0.6551 8.48e-08 0.6346 8.70e-10 0.7837 3.17e-09 0.7821 1.35e-13 0.7359 1.90e-13 0.5456 7.44e-13 0.8154 8.77e-16 0.5252 2.59e-13 0.7877 1.92e-14 0.8063 1.51e-15 0.7871 4.78e-15 0.5613 1.27e-12 0.8341 1.51e-14 0.8097 3.34e-18 0.7870 1.34e-17 0.6833 7.49e-15 0.6025 8.66e-17 0.8097 5.35e-17 0.8097 8.35e-16 0.6616 8.06e-13 0.5426 5.62e-14 0.7965 1.96e-14 0.7980 1.57e-12 0.7775 7.35e-12 0.6928 9.25e-10 0.6703 2.54e-10 0.5717 1.08e-11 0.7880 3.57e-11 0.7634 1.71e-14 0.7006 8.28e-13 0.5536 1.66e-13 0.8249 1.78e-14 0.7366 1.00e-14 0.6161 3.74e-10 0.5127 1.21e-13 0.7097 8.36e-13 0.7862 4.82e-15 0.7369 7.44e-15 0.6405 3.92e-11 0.5817 2.62e-15 0.7182 5.50e-18 0.6745 1.67e-18 0.6030 5.19e-14 0.5594 1.62e-13 0.5167 5.91e-17 0.6694 3.10e-15 0.7972 1.74e-19 0.7490 3.34e-19 0.7309 4.73e-18 0.6713 1.24e-16 0.6484 2.36e-19 0.7694 6.35e-19 0.7618 1.91e-22 0.7337 2.72e-22 0.6817 7.28e-20 0.6316 4.11e-18 0.6540 1.51e-22 0.7290 1.80e-21

X Color code Background total Foreground total show chrom show replicas Statistics Parameters Statistics Total Chrom Correlation 0.12 Observations 3061267 Correlation stDev 0.27 Bg Correlation 0.009 Bg Correlation stDev 0.12 P-value 1.2e-287 M-W statistics -32 Parameters Name Value step 100 strand 1 wSize 200000 wStep 200000 noiseLevel 0.0 flankSize 0 kernelSigma 2000 threshold 0; kernelType NORMAL maxNA 99 maxZero 99 nShuffle 30 pVal 0 qVal 0 Rscrpit 1 Distances DETAIL OutChrom 1 chrom cc count All 0.07 349088 chr1 0.07 349088 chr2 0.07 349088 chr3 0.07 349088 chr4 0.07 349088 chr5 0.07 349088 chr6 0.07 349088 chr7 0.07 349088 chr8 0.07 349088 chr9 0.07 349088 chr10 0.07 349088 chr11 0.07 349088 chr12 0.07 349088 chr13 0.07 349088 chr14 0.07 349088 chr15 0.07 349088 chr16 0.07 349088 chr17 0.07 349088 chr18 0.07 349088 chr19 0.07 349088 chr20 0.07 349088 chr21 0.07 349088 chr22 0.07 349088 chrX 0.07 349088 chrY 0.07 349088